These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14953#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1855 fasta sequence [AAGTCAATATAATTTTCGCAATAAAAAAAGAACACTCGCTATTCGGTTGGTCTAGTCGCTCTACAAGTCCACACACGACCCTACTCCTAACCTGTCAAGTCTCCACCACTCTGCAGCAACTCTGCTTGCGAATCCGGGAAAATTTTGCTTGGCAATCGCCGTGATATTCCGTGCGAAACTTCCCAGTAGTACAATCGGCAACTGCAACACGGAGCCACTCGGTCACCGGCAATAAAACCCTCGCCACTTCATCCATCTCTCGCACCGCGCACATCGAATCGCATCGCACACACGGCGGAAGCAACGCCACTAGCCTGACGTACGTACGGCAGCAATGGCCATCGCCACCGAGTCGCAGCAGGCGCAGGTGCAAGCCGCCGCCACCGACGCCGTCGCGGCGGCGGCGG-TCGGGCGCAAGGTGGTGGACGAGGTGTCCGGCTGGCTGCGCGTGTTCGACGACGGCACCGTCGACCGCACGTGGACGGGTCCCCCCGAGGTGCTCCCGCTGATGCAGCCGGTGCCCGCCTACGCCGAGCCGCGCGACGGCCACACGCTGCACGACCTCCCCGGCGAGCCCAACCTCCGCGTGTACCTCCCCGAGGTCGCCCTCGCCGAGCGGCGCCTCCCCGTCGTCGTGCAGCTCCACGGTGGCGGCTTCTGCATCTCCCACCCGTCCTGGCTCATGTACCACCACTTC-TACGCGCGCCTCGCGTGCGCGCTCCCGGCCGTGGTGGTCGCCGTCGAGCTGCCCTTGGCGCCCGAGCGCCGCCTGCCGGCGCACATCGACACCGGCGTCGACGGGCTCCGCCGGCTCCGCTCCATCGCGCTGTCCGACGCCGCCGCTCTCGGCGACCCGGCGGCGGAGCTCCTCC-GGACGGCCGCCGACTTCTCGCGGGTGTTCCTCATCGGGGACAGCTCGGGCGGCAACCTCGTCCACCACGTCGGCGCGCGCGTCGGCGAGGACGGGGCGGACAGCTGGGCGCCCCTCCGCGTCGCCGGAGGCATCCCGCTCCACCCGGGGTTCGTGCACGCCACCCGGAGCAAGTCGGAGCTGGAGCCGAGGCCCGACTCGGTG-TTCTTCACCCTCGACATGCTCGACAAGTTCCTCGCCATGGCGCTCCCCGAGGGCGCCACCAAGGACCACCCGTACACGTGCCCGATGGGGCCGA-ACGCGCCGCCGCTGGAGTCCGTCCCGCTGCCGCCGCTGCTGGTCGCCGTCGCCGAGCACGACCTCAT-CCGGGA-CACCAA-CCT-C-GAG-TAC-TGC-GACGCGCTGCGCACCG-CCGG-CAAGGACGTGGAGGTG-CTGGTCA-ACCGCGGCATGAGCCACTCCTTCTACCTCAACAAG-TAC-GCCGTCG-ACA-TGGA-CCC-GGC-CAC-CGGCGAGAGGACCCGGGAGCTCGTCGACGCCAT-CA-AGAGCTTCGTCGACCGCCACTAG-ACGTGGAGATCAGA-GAAGCGCATCTTCTCCACCGTACGTGTAGCAC-CTTCCAGGTTGTGATTGTTTCTCGTCTCGTGTCAT-GACTGTCCGCCATACGTTGGCCTGAGCTTGA-CCTTGTGTGTGGCTTGCTGTCCATGTCAAGCCGATATCATGTACGCATCAGTGTTTAGGTACGCGTTTGAGTAGTTAC-AAATAAATAATTGGATCATTCCCGAACAGTGGACTAGTTGAAGACTTGAAGTTGATAGGTCGAGTGTGTGGAGTGTCCAATGATAAAGGGTGGCATTGCATATTTGCATGTGCATTTAAATCTTTAATTACTCTATCCGCCATATAATGTAAGGTATTTGGTATTTTGGTCTTCAAATTTGTATCAAAATATAAGAAATTTTATGATCCCAAAATAATTATTTATTCTCTCACAAAAAAAAA] [-] EMBL AK108696 [AAGTCAATATAATTTTCGCAATAAAAAAAGAACACTCGCTATTCGGTTGGTCTAGTCGCTCTACAAGTCCACACACGACCCTACTCCTAACCTGTCAAGTCTCCACCACTCTGCAGCAACTCTGCTTGCGAATCCGGGAAAATTTTGCTTGGCAATCGCCGTGATATTCCGTGCGAAACTTCCCAGTAGTACAATCGGCAACTGCAACACGGAGCCACTCGGTCACCGGCAATAAAACCCTCGCCACTTCATCCATCTCTCGCACCGCGCACATCGAATCGCATCGCACACACGGCGGAAGCAACGCCACTAGCCTGACGTACGTACGGCAGCAATGGCCATCGCCACCGAGTCGCAGCAGGCGCAGGTGCAAGCCGCCGCCACCGACGCCGTCGCGGCGGCGGCGG TCGGGCGCAAGGTGGTGGACGAGGTGTCCGGCTGGCTGCGCGTGTTCGACGACGGCACCGTCGACCGCACGTGGACGGGTCCCCCCGAGGTGCTCCCGCTGATGCAACCGGTGCCCGCCTACGCCGAGCCGCGCGACGGCCACACGCTGCACGACCTCCCCGGCGAGCCCAACCTCCGCGTGTACCTCCCCGAGGTCGCCCTCGCCGAGCGGCGCCTCCCCGTCGTCGTGCAGCTCCACGGTGGCGGCTTCTGCATCTCCCACCCGTCCTGGCTCATGTACCACCACTTC TACGCGCGCCTCGCGTGCGCGCTCCCGGCCGTGGTGGTCGCCGTCGAGCTGCCCTTGGCGCCCGAGCGCCGCCTGCCGGCGCACATCGACACCGGCGTCGACGGGCTCCGCCGGCTCCGCTCCATCGCGCTGTCCGACGCCGCCGCTCTCGGCGACCCGGCGGCGGAGCTCCTCC GGACGGCCGCCGACTTCTCGCGGGTGTTCCTCATCGGGGACAGCTCGGGCGGCAACCTCGTCCACCACGTCGGCGCGCGCGTCGGCGAGGACGGGGCGGACAGCTGGGCGCCCCTCCGCGTCACCGGAGGCATCCCGCTCCACCCGGGGTTCGTGCACGCCACCCGGAGCAAGTCGGAGCTGGAGCCGAGGCCCGACTCGGTG TTCTTCACCCTCGACATGCTCGACAAGTTCCTCGCCATGGCGCTCCCCGAGGGCGCCACCAAGGACCACCCGTACACGTGCCCGATGGGGCCGA ACGCGCCGCCGCTGGAGTCCGTCCCGCTGCCGCCGCTGCTGGTCGCCGTCGCCGAGCACGACCTCAT CCGGGA CACCAA CCT C GAG TAC TGC GACGCGCTGCGCACCG CCGG CAAGGACGTGGAGGTG CTGGTCA ACCGCGGCATGAGCCACTCCTTCTACCTCAACAAG TAC GCCGTCG ACA TGGA CCC GGC CAC CGGCGAGAGGACCCGGGAGCTCGTCGACGCCAT CA AGAGCTTCGTCGACCGCCACTAG ACGTGGAGATCAGA GAAGCGCATCTTCTCCACCGTACGTGTAGCAC ] [+] EMBL AK072435 [ CATCGAATCGCATCGCACACACGGCGGAAGCAACGCCACTAGCCTGACGTACGTACGGCAGCAATGGCCATCGCCACCGAGTCGCAGCAGGCGCAGGTGCAAGCCGCCGCCACCGACGCCGTCGCGGCGGCGGCGG TCGGGCGCAAGGTGGTGGACGAGGTGTCCGGCTGGCTGCGCGTGTTCGACGACGGCACCGTCGACCGCACGTGGACGGGTCCCCCCGAGGTGCTCCCGCTGATGCAGCCGGTGCCCGCCTACGCCGAGCCGCGCGACGGCCACACGCTGCACGACCTCCCCGGCGAGCCCAACCTCCGCGTGTACCTCCCCGAGGTCGCCCTCGCCGAGCGGCGCCTCCCCGTCGTCGTGCAGCTCCACGGTGGCGGCTTCTGCATCTCCCACCCGTCCTGGCTCATGTACCACCACTTC TACGCGCGCCTCGCGTGCGCGCTCCCGGCCGTGGTGGTCGCCGTCGAGCTGCCCTTGGCGCCCGAGCGCCGCCTGCCGGCGCACATCGACACCGGCGTCGACGGGCTCCGCCGGCTCCGCTCCATCGCGCTGTCCGACGCCGCCGCTCTCGGCGACCCGGCGGCGGAGCTCCTCC GGACGGCCGCCGACTTCTCGCGGGTGTTCCTCATCGGGGACAGCTCGGGCGGCAACCTCGTCCACCACGTCGGCGCGCGCGTCGGCGAGGACGGGGCGGACAGCTGGGCGCCCCTCCGCGTCGCCGGAGGCATCCCGCTCCACCCGGGGTTCGTGCACGCCACCCGGAGCAAGTCGGAGCTGGAGCCGAGGCCCGACTCGGTG TTCTTCACCCTCGACATGCTCGACAAGTTCCTCGCCATGGCGCTCCCCGAGGGCGCCACCAAGGACCACCCGTACACGTGCCCGATGGGGTCGA ACGCGCCGCCGCTGGAGTCCGTCCCGCTGCCGCCGCTGCTGGTCGCCGTCGCCGAGCACGACCTCAT CCGGGA CACCAA CCT C GAG TAC TGC GACGCGCTGCGCACCG CCGG CAAGGACGTGGAGGTG CTGGTCA ACCGCGGCATGAGCCACTCCTTCTACCTCAACAAG TAC GCCGTCG ACA TGGA CCC GGC CAC CGGCGAGAGGACCCGGGAGCTCGTCGACGCCAT CA AGAGCTTCGTCGACCGCCACTAG ACGTGGAGATCAGA GAAGCGCATCTTCTCCACCGTACGTGTAGCAC CTTCCAGGTTGTGATTGTTTCTCGTCTCGTGTCAT GACTGTCCGCCATACGTTGGCCTGAGCTTGA CCTTGTGTGTGGCTTGCTGTCCATGTCAAGCCGATATCATGTACGCATCAGTGTTTAGGTACGCGTTTGAGTAGTTAC AAATAAATAATTGGATCATTCCCGAACAGTGGACTAGTTGAAGACTTGAAGTTGATAGGTCGAGTGTGTGGAGTGTCCAATGATAAAGGGTGGCATTGCATATTTGCATGTGCATTTAAATCTTTAATTACTCTATCCGCCATATAATGTAAGGTATTTGG ] [+] EMBL AK058526 [ ATCGAATCGCATCGCACACACGGCGGAAGCAACGCCACTAGCCTGACGTACGTACGGCAGCAATGGCCATCGCCACCGAGTCGCAGCAGGCGCAGGTGCAAGCCGCCGCCACCGACGCCGTCGCGGCGGCGGCGG TCGGGCGCAAGGTGGTGGACGAGGTGTCCGGCTGGCTGCGCGTGTTCGACGACGGCACCGTCGACCGCACGTGGACGGGTCCCCCCGAGGTGCTCCCGCTGATGCAGCCGGTGCCCGCCTACGCCGAGCCGCGCGACGGCCACACGCTGCACGACCTCCCCGGCGAGCCCAACCTCCGCGTGTACCTCCCCGAGGTCGCCCTCGCCGAGCGGCGCCTCCCCGTCGTCGTGCAGCTCCACGGTGGCGGCTTCTGCATCTCCCACCCGTCCTGGCTCATGTACCACCACTTC TACGCGCGCCTCGCGTGCGCGCTCCCGGCCGTGGTGGTCGCCGTCGAGCTGCCCTTGGCGCCCGAGCGCCGCCTGCCGGCGCACATCGACACCGGCGTCGACGGGCTCCGCCGGCTCCGCTCCATCGCGCTGTCCGACGCCGCCGCTCTCGGCGACCCGGCGGCGGAGCTCCTCCGGGACGGCCGCCGACTTCTCGCGGGTGTTCCTCATCGGGGACAGCTCGGGCGGCAACCTCGTCCACCACGTCGGCGCGCGCGTCGGCGAGGACGGGGCGGACAGCTGGGCGCCCCTCCGCGTCGCCGGAGGCATCCCGCTCCACCCGGGGTTCGTGCACGCCACCCGGAGCAAGTCGGAGCTGGAGCCGAGGCCCGACTCGGTG TTCTTCACCCTCGACATGCTCGACAAGTTCCTCGCCATGGCGCTCCCCGAGGGCGCCACCAAGGACCACCCGTACACGTGCCCGATGGGGCCGA ACGCGCCGCCGCTGGAGTCCGTCCCGCTGCCGCCGCTGCTGGTCGCCGTCGCCGAGCACGACCTCAT CCGGGA CACCAA CCT C GAG TAC TGC GACGCGCTGCGCACCG CCGG CAAGGACGTGGAGGTG CTGGTCA ACCGCGGCATGAGCCACTCCTTCTACCTCAACAAG TAC GCCGTCG ACA TGGA CCC GGC CAC CGGCGAGAGGACCCGGGAGCTCGTCGACGCCAT CA AGAGCTTCGTCGACCGCCACTAG ACGTGGAGATCAGA GAAGCGCATCTTCTCCACCGTACGTGTAGCAC CTTCCAGGTTGTGATTGTTTCTCGTCTCGTGTCAT GACTGTCCGCCATACGTTGGCCTGAGCTTGA CCTTGTGTGTGGCTTGCTGTCCATGTCAAGCCGATATCATGTACGCATCAGTGTTTAGGTACGCGTTTGAGTAGTTAC AAATAAATAATTGGATC ] [+] EMBL AU091470 [ ACGGCGGAAGCAACGCCACTAGCCTGACGTACGTACGGCAGCAATGGCCATCGCCACCGAGTCGCAGCAGGCGCAGGTGCAAGCCGCCGCCACCGACGCCGTCGCGGCGGCGGCGG TCGGGCGCAAGGTGGTGGACGAGGTGTCCGGCTGGCTGCGCGTGTTCGACGACGGCACCGTCGACCGCACGTGGACGGGTCCCCCCGAGGTGCTCCCGCTGATGCAGCCGGTGCCCGCCTACGCCGAGCCGCGCGACGGCCACACGCTGCACGACCTCCCCGGCGAGCCCAACCTCCGCGTGTACCTCCCCGAGGTCGCCCTCGCCGAGCGGCGCCTCCCCGTCGTCGTGCAGCTCCACGGTGGCGGCTTCTGCATCTCCCACCCGTCCTGGCTCATGTACCACCACTTCTTACGCGCGCCTCGCGTGCGCGCTCCCGGCCGTGGTGGTCGCCGTCGAGCTGCCCTTGGCGCCCGAGCGCCGCCTGCCGGCGCACATCGACACCGGCGTCGACGGGCTCCGCCGGCTCCGCTCCATCG ] [+] EMBL AU065367 [ GGCGGAA NAACGCCACTAGCCTGACGTACGTACGGCAGCAATGGCCATCGCCACCGAGTCGCAGCAGGCGCAGGTGCAAGCNGCCGCCACCGACGCCGTCGCGGCGGCNGCGGTTCGGGCGCAAGGTGGTGGACGAGGTGTCCGGCTGGCTGCGCGTGTTCGACGACGGCACCGTCGACCGCACGTGGACGGGTCCCCCCGAGGTGCTCCCGCTGATGCANCCGGTGCCCGCCTACNCCGAGCCGCGCGACGGCCACANGCTGCACGAACTCCCCGGCGAGCCCAACCTCCGCGTGTAACTTCCCGAAGTNGGCCTCGC ] [+] EMBL AU065407 [ GGCGGAAG AACGCCACTAGCCTGACGTACGTACGGCAGCAATGGCCATCGCCACCGAGTCGCAGCAGGCGCAGGTGCAAGCCGCCGCCACCGACGCCGTCGCGG GGCGNCGGTTCGGGCGCAAGGTGGTGGACGAGGTGTCCGGCTGGCTGCGCGTGTTCGACGACGGCACCGT GACCGCACGTGGACGGGTCCCCCCGAGGTGCTCCCGCTGATGCAGCCGGTGCCCGNCTACGNCGAGCCGCGCGACGGCCACACGNTGCACGACCTCCCCGGC ] [+] EMBL OSC756 [ GGAGCCGAGGCCCGACTC GTGNTTCTTCACCCTCGACATGCTCGACAAGTTCCTCGCCATNGC CTCCCCGAGGGCNCANCCAAGGACCACCCGTACACGTGCCCGATGGGG CGANACGCGCCGCCGCTGGAGTCCGTCCCGCTNCCGCCGCTGCTGGTCGCCGTCGCCGAGCACGACCTCAT CCGGGA CACCAA CCT C GAG TACTTGC GACGCGCTG GCACCG CCGG CAAGGACGTGGAGGTG CTGGTCA ACCGCGGCATGAG CACTTCTTCTACCTCAACAAG TAC GCCGTCG ACATTGGA CCC CGG CAC CGGGAAGAag ] [+] EMBL AU056827 [ ACCTCATCCCGGGACCACCAACCCTCC GAG TAC TGC GACGC CTGCGCACCG CCGG CAAGGACGTGGAGGTG CTGGTCA ACCGCGGCNTGAGCCACTCCTTCTACCTCAACAAG TAC GCCGTCG ACA TGGACCCC GGC CAC CGGCGAGAGGACCCGGGAGCTCGTCGACGCCATCCA AGAGCTTCGTCGACCGCCACTAG ACGTGGAGATCAGA GAAGCGCATCTTCTCCACCGTACGTGTAGCAC CTTCCAGGTTGTGATTGTTTCTCGTCTCGTGTCAT GACTGTCCGCCATACGTTGGCCTGAGCTTGA CCTTGTGTGTGGCTTGCTGTCCATGTCAAGCCGATATCATGTACGCATCAGTGTTTAGGTACGCGTTTGAGTAGTTAC AAATAAATAATTGGATCATTCCCGAACAGTGGACTAGTTGAAGACTTGAAGTTGATAGGTCGAGTGTGTGGAGTGTCCAATGATAAAGGGTGGCATTGCATATTTGCATGTGCATTTAAATCTTTAATTACTCTATCCGCCATATAATGTAAGGTATTTGGTATTTTGGTCTTCAAATTTGTATCAAAATATAAGAAATTTTATGATCCCAAAATAATTATTTATTCTCTCAAAAAAAAA ] [+] EMBL BI810350 [ CCAA CCT CTGAGTTTC TTCTGACGCGCTGCGC CCGTCCGGTCAAGGACGTGGAGGTGTCTGGTCATACCGCGGCATGAGCCACTCCTTTTACCTCAACAAG TAC GCCGTGG ACA TGGA CCCAGGCACACACGGCGAGAGGACCCGGGAGCTCGTCGACGCCAT CA AGAGCTTCGTCGACCGCCACTAG ACGTGGAGATCAGA GAAGCGCATCGTCTCCACCGTACGTGTAGCACACTTCCAGGCTGTAATTGTTTCTCGTCTCGTGTCAT GACTGTCCGCCATACGTTGGCCTGAGCTTGA CCGTGTGTGTGGCTTGCTGTCCATGTCAA CCGATATCATGTACGCATCAGTGTTTAGGTACGCGTTTGAGTAGTTACAAAATAAATAATTGGATCATTCCCGAAaaaaa ] [+] EMBL AU094460 [ AAGGACGTGAAGGTN CTGGTCA NCCGCGGCATGAGCCACTCCTTCTACCTCAACAAG TAC GCCGTCG ACA TGGA CCC GGC CAC CGGCGAGAGGACCCGGGAGCTCGTCGACGCCAT CA AGAGCTTCGTCGACCGCCACTAG ACGTGGAGATCAGA GAAGCGCATCTTCTCCACCGTACGTGTAGCAC CTTCCAGGTTGTGATTGTTTCTCGTCTCGTGTCAT GACTGTCCGCCATACGTTGGCCTGAGCTTGA CCTTGTGTGTGGCTTGCTGTCCATGTCAAGCCGATATCATGTACGCATCAGTGTTTAGGTACGCGTTTGAGTAGTTAC AAATAAATAATTGGATCATTCCCGAACAGTGGACTAGTTGAAGACTTGAAGTTGATAGGTCGAGTGTGTGGAGTGTCCAATGATAAAGGGTGGCATTGCATATTTGCATGTGCATTTAAATCTTTAATTACTCTATCCGCCATATAATGTAAGGTATTTGGTATTTTGGTCTTCAAATTTGTATCAAAATATAAGAAATTTTATGATCCCAAAATAATTATTTATTCTCTCACATAAAAAAA] [+] EMBL BI796422 [ AAGTTACGGCCGTCGTACA TGGA CCC GGC CAC CGGCGAGAGGACCCGGGAGCTCGTCGACGCCAT CACAGAGCTTCGTCGACCGCCACTAGAACGTGGAGATCAGAGGAAGCGCATCGTCTCCACCGTACGTGTAGCAC CTT CAGGCTGTAATTGTTTCTCGTCTCGTGTCAT GACTGTCCGCCATACG TGGCCTGAGCTTGA CCGTGTGTGTGGCTTGCTGTCCATGTCAAGCCGATATCATGTACGCATCAGTGTTTAGGTACGCGTTTGAGTAGTTAC AATAAATAATTGGATCATTCCCGAACAGTGGACTAGTTGAAGACTTGAAGTTGATAGGTCGAGTGTGTGGAGTGTCC ATGATAAAGGGTGGC TTGCATATTTGCATGTGCATTTAAATCTTTAATTACTCCATCCGTCATATAATGTAAGGTATTTGGTATTTTGGTCTTCAAAa ] [+] EMBL AU184705 [ CACTAG ACGTGGAGATCAGA GAAGCGCATCTTCTCCNCCGTACGTGTAGCAC CTTCCAGGTTGTGATTGTTTCTCGTCTCGTGTCAT GACTGTCCGCCATACGTTGGCCTGAGCTTGA CCTTGTGTGTGGCTTGCTGTCCATGTCAAGCCGATATCATGTACGCATCAGTGTTTAGGTACGCGTTTGAGTAGTTAC AAATAAATAATTGGATCATTCCCGAACAGTGGACTAGTTGAAGACTTGAAGTTGATAGGTCGAGTGTGTGGAGTGTCCAATGATAAAGGGTGGCATTGCATATTTGCATGTGCATTTAAATCTTTAATTACTCTATCCGCCATATAATGTAAGGTATTTGGTATTTTGGTCTTCAAATTTGTATCAAAATATAAGAAATTTTATGATCCCAAAATAATTATTTATTCTCTCACAAAAAA ] [+] EMBL AU184708 [ CTAG ACGTGGAGATCAGA GAAGCGCATCTTCTCCACCGTACGTGTAGCAC CTTCCAGGTTGTGATTGTTTCTCGTCTCGTGTCAT GACTGTCCGCCATACGTTGGCCTGAGCTTGA CCTTGTGTGTGGCTTGCTGTCCATGTCAAGCCGATATCATGTACGCATCAGTGTTTAGGTACGCGTTTGAGTAGTTAC AAATAAATAATTGGATCATTCCCGAACAGTGGACTAGTTGAAGACTTGAAGTTGATAGGTCGAGTGTGTGGAGTGTCCAATGATAAAGGGTGGCATTGCATATTTGCATGTGCATTTAAATCTTTAATTACTCTATCCGCCATATAATGTAAGGTATTTGGTATTTTGGTCTTCAAATTTGTATCAAAATATAAGAAATTTTATGATCCCAAAATAATTATTTATTCTCTCACAAAAAA ] [+] EMBL CA998471 [ GGTTGTGATTGTTTCTCGTCTCGTGTCAT GACTGTCCGCCATACGTTGGCCTGAGCTTGA CCTTGTGTGTGGCTTGCTGTCCATGTCAAGCCGATATCATGTACGCATCAGTGTTTAGGTACGCGTTTGAGTAGTTAC AAATAAATAATTGGATCATTCCCGAACAGTGGACTAGTTGAAGACTTGAAGTTGATAGGTCGAGTGTGTGGAGTGTCCAATGATAAAGGGTGGCATTGCATATTTGCATGTGCATTTAAATCTTTAATTACTCTATCCGCCATATAATGTAAGGTATTTGGTATTTTGGTCTTCAAATTTGTATCAAAATATAAGAAATTTTATGATCCCAAAATAATTATTTAaaaaaaaaa ] [+] EMBL CA998480 [ GGTTGTGATTGTTTCTCGTCTCGTGTCAT GACTGTCCGCCATACGTTGGCCTGAGCTTGA CCTTGTGTGTGGCTTGCTGTCCATGTCAAGCCGATATCATGTACGCATCAGTGTTTAGGTACGCGTTTGAGTAGTTAC AAATAAATAATTGGATCATTCCCGAACAGTGGACTACTTGAAGACTTGAAGTTGATACGTCGAGTGTGTGGAGTGTCCAATGATAAAGGGTGGCATTGCATATTTGCATGTGCATTTAAATCTTTAATTACTCTATCC ] [+] EMBL AU029716 [ GTCATGGACTGTCCNCCATACGTTGNCCTGAGCTTGACCCTTGTGTGTGGCTTGCTGTCCATGTCAANCCGATATCATGTNCGCATCAGTGTTTAGGTACGCGTTTGAGTAGTTAC AAATAAATAATTGGATCATTCCCGAACAGTGGACTAGTTGAAGACTTGAAGTTGATAGGTCGAGTGTGTGGAGTGTCCAATGATAAAGGGTGGCATTGCATATTTGCATGTGCATTTAAATCTTTAATTACTCTATCCGCCATATAATGTAAGGTATTTGGTATTTTGGTCTTCAAATTTGTATCAAAATATAAGAAATTTTATGATCCCAAAATAATTATTTATaaaaa ] consensusID : consensus_14953#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 435 fasta sequence [TTCCTCATCGGGGACAGCTCGGGCGGCAACCTCGTCCACCACGTCGGCGCGCGCGTCGGCGAGGACGGGGCGGACAGCTGGGCGCCCCTCCGCGTCGCCGGAGNATNCCCGCTCCACCCGGGGTTCGTGCACGCCACCCGGAGCAAGTCGGAGCTGGAGCCGAGGCCCGACTCGGTGTTCTTCACCCTCGACATGCTCGACAAGTTCCTCGCCATGGCGCTCCCCGAGGGCGCCACCAAGGACCACCCGTACACGTGCCCGATGGGGCCGAACGCGCCGCCGCTGGAGTCCGTCCCGCTGCCGCCGCTGCTGGTCGCCGTCGCCGAGCACGACCTCATCCGGGACACCAACCTCGAGTACTGCGACGCGCTGCGCACCGCGCGAACGGCCACACGGCTGCACGACCTCCCCGGCGAGCCCAAACCTCCGCGTGTA] [+] EMBL AU029715 [TTCCTCATCGGGGACAGCTCGGGCGGCAACCTCGTCCACCACGTCGGCGCGCGCGTCGGCGAGGACGGGGCGGACAGCTGGGCGCCCCTCCGCGTCGCCGGAGNATNCCCGCTCCACCCGGGGTTCGTGCACGCCACCCGGAGCAAGTCGGAGCTGGAGCCGAGGCCCGACTCGGTGTTCTTCACCCTCGACATGCTCGACAAGTTCCTCGCCATGGCGCTCCCCGAGGGCGCCACCAAGGACCACCCGTACACGTGCCCGATGGGGCCGAACGCGCCGCCGCTGGAGTCCGTCCCGCTGCCGCCGCTGCTGGTCGCCGTCGCCGAGCACGACCTCATCCGGGACACCAACCTCGAGTACTGCGACGCGCTGCGCACCGCGCGAACGGCCACACGGCTGCACGACCTCCCCGGCGAGCCCAAACCTCCGCGTGTA] consensusID : consensus_14953#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 301 fasta sequence [ACTTCTACGCGCGCCTCGCGTGCGCGCTCCCGGCCGTGGTGGTCGCCGTCGAGCTGCCCTTGGCGCCCGAGCGCCGCCTGCCGGCGCACGTCGACGCCATCAAGAGCTTCGTCGACCGCCACTAGACGTGGAGATCAGAGAAGCGCATCTTCTCCACCGTACGTGTAGCACCTTCCAGGTTGTGATTGTTTCTCGTCTCGTGTCATGACTGTCCGCCATACGTTGGCCTGAGCTTGACCTTGTGTGTGGCTTGCTGNCCATGTCAAGCCGATATCATGTACGCATTAGTGGTTAAGGACGC] [+] EMBL AU184834 [ACTTCTACGCGCGCCTCGCGTGCGCGCTCCCGGCCGTGGTGGTCGCCGTCGAGCTGCCCTTGGCGCCCGAGCGCCGCCTGCCGGCGCACGTCGACGCCATCAAGAGCTTCGTCGACCGCCACTAGACGTGGAGATCAGAGAAGCGCATCTTCTCCACCGTACGTGTAGCACCTTCCAGGTTGTGATTGTTTCTCGTCTCGTGTCATGACTGTCCGCCATACGTTGGCCTGAGCTTGACCTTGTGTGTGGCTTGCTGNCCATGTCAAGCCGATATCATGTACGCATTAGTGGTTAAGGACGC] consensusID : consensus_14953#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 224 fasta sequence [TCGCACACACNGCGGAAGAACTGCCACTAGCCTGACGTACGTACGGCAGCAATNGCCATCGCCACCGAGTCGCAGCAGGCCAGGTGCAAGCCGCCGCCACCGACGCCGTCGCGGNNCGAATNCNGTGGCGCAAGGTGGTGGACGAGGTGTCCGGCTGGCTGCGCGTGTTCGACGACGGCACCGTGACCGCACGTGGACGGGTCCCCCCGAGGTGCTCCCNNTGA] [+] EMBL C26070 [TCGCACACACNGCGGAAGAACTGCCACTAGCCTGACGTACGTACGGCAGCAATNGCCATCGCCACCGAGTCGCAGCAGGCCAGGTGCAAGCCGCCGCCACCGACGCCGTCGCGGNNCGAATNCNGTGGCGCAAGGTGGTGGACGAGGTGTCCGGCTGGCTGCGCGTGTTCGACGACGGCACCGTGACCGCACGTGGACGGGTCCCCCCGAGGTGCTCCCNNTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14953#0 AAGTCAATATAATTTTCGCAATAAAAAAAGAACACTCGCTATTCGGTTGGTCTAGTCGCT 60 consensus_14953#1 ------------------------------------------------------------ consensus_14953#3 ------------------------------------------------------------ consensus_14953#2 ------------------------------------------------------------ consensus_14953#0 CTACAAGTCCACACACGACCCTACTCCTAACCTGTCAAGTCTCCACCACTCTGCAGCAAC 120 consensus_14953#1 ------------------------------------------------------------ consensus_14953#3 ------------------------------------------------------------ consensus_14953#2 ------------------------------------------------------------ consensus_14953#0 TCTGCTTGCGAATCCGGGAAAATTTTGCTTGGCAATCGCCGTGATATTCCGTGCGAAACT 180 consensus_14953#1 ------------------------------------------------------------ consensus_14953#3 ------------------------------------------------------------ consensus_14953#2 ------------------------------------------------------------ consensus_14953#0 TCCCAGTAGTACAATCGGCAACTGCAACACGGAGCCACTCGGTCACCGGCAATAAAACCC 240 consensus_14953#1 ------------------------------------------------------------ consensus_14953#3 ------------------------------------------------------------ consensus_14953#2 ------------------------------------------------------------ consensus_14953#0 TCGCCACTTCATCCATCTCTCGCACCGCGCACATCGAATCGCATCGCACACACGGCGGAA 300 consensus_14953#1 ------------------------------------------------------------ consensus_14953#3 ------------------------------------------------------------ consensus_14953#2 ------------------------------------------------------------ consensus_14953#0 GCAACGCCACTAGCCTGACGTACGTACGGCAGCAATGGCCATCGCCACCGAGTCGCAGCA 360 consensus_14953#1 ------------------------------------------------------------ consensus_14953#3 ------------------------------------------------------------ consensus_14953#2 ------------------------------------------------------------ consensus_14953#0 GGCGCAGGTGCAAGCCGCCGCCACCGACGCCGTCGCGGCGGCGGCGGTCGGGCGCAAGGT 420 consensus_14953#1 ------------------------------------------------------------ consensus_14953#3 ------------------------------------------------------------ consensus_14953#2 ------------------------------------------------------------ consensus_14953#0 GGTGGACGAGGTGTCCGGCTGGCTGCGCGTGTTCGACGACGGCACCGTCGACCGCACGTG 480 consensus_14953#1 ------------------------------------------------------------ consensus_14953#3 ------------------------------------------------------------ consensus_14953#2 ------------------------------------------------------------ consensus_14953#0 GACGGGTCCCCCCGAGGTGCTCCCGCTGATGCAGCCGGTGCCCGCCTACGCCGAGCCGCG 540 consensus_14953#1 ------------------------------------------------------------ consensus_14953#3 ------------------------------------------------------------ consensus_14953#2 ------------------------------------------------------------ consensus_14953#0 CGACGGCCACACGCTGCACGACCTCCCCGGCGAGCCCAACCTCCGCGTGTACCTCCCCGA 600 consensus_14953#1 ------------------------------------------------------------ consensus_14953#3 ------------------------------------------------------------ consensus_14953#2 ------------------------------------------------------------ consensus_14953#0 GGTCGCCCTCGCCGAGCGGCGCCTCCCCGTCGTCGTGCAGCTCCACGGTGGCGGCTTCTG 660 consensus_14953#1 ------------------------------------------------------------ consensus_14953#3 ------------------------------------------------------------ consensus_14953#2 ------------------------------------------------------------ consensus_14953#0 CATCTCCCACCCGTCCTGGCTCATGTACCACCACTTCTACGCGCGCCTCGCGTGCGCGCT 720 consensus_14953#1 ------------------------------------------------------------ consensus_14953#3 ------------------------------------------------------------ consensus_14953#2 ------------------------------------------------------------ consensus_14953#0 CCCGGCCGTGGTGGTCGCCGTCGAGCTGCCCTTGGCGCCCGAGCGCCGCCTGCCGGCGCA 780 consensus_14953#1 ------------------------------------------------------------ consensus_14953#3 ------------------------------------------------------------ consensus_14953#2 ------------------------------------------------------------ consensus_14953#0 CATCGACACCGGCGTCGACGGGCTCCGCCGGCTCCGCTCCATCGCGCTGTCCGACGCCGC 840 consensus_14953#1 ------------------------------------------------------------ consensus_14953#3 ------------------------------------------------------------ consensus_14953#2 ------------------------------------------------------------ consensus_14953#0 CGCTCTCGGCGACCCGGCGGCGGAGCTCCTCCGGACGGCCGCCGACTTCTCGCGGGTGTT 900 consensus_14953#1 ----------------------------------------------------------TT 2 consensus_14953#3 ------------------------------------------------------------ consensus_14953#2 ------------------------------------------------------------ consensus_14953#0 CCTCATCGGGGACAGCTCGGGCGGCAACCTCGTCCACCACGTCGGCGCGCGCGTCGGCGA 960 consensus_14953#1 CCTCATCGGGGACAGCTCGGGCGGCAACCTCGTCCACCACGTCGGCGCGCGCGTCGGCGA 62 consensus_14953#3 --------------------------------------------TCGCACACA-CNGCGG 15 consensus_14953#2 -----------------------ACTTCTACGCGCGCCTCGCGTGCGCGCTCCCGGCCGT 37 *** * * ** consensus_14953#0 GGACGGGGCGGACAG------CTGGGCGCCCCTCCGCGTC--GCCGGAGGCATCCCGCTC 1012 consensus_14953#1 GGACGGGGCGGACAG------CTGGGCGCCCCTCCGCGTC--GCCGGAGNATNCCCGCTC 114 consensus_14953#3 AAGAACTGCCACTAG------CCTGACGTACGT-----AC--GGCAGCAATNGCCATCGC 62 consensus_14953#2 GGTGGTCGCCGTCGAGCTGCCCTTGGCGCCCGAGCGCCGCCTGCCGGCGCACGTCGACGC 97 ** * * ** * * * * * * * * consensus_14953#0 CACCCGGGGTTCGTGCA--CGCCACCCG--GAGCAAGTCGGAGCTGGAGCCGAGGCCCGA 1068 consensus_14953#1 CACCCGGGGTTCGTGCA--CGCCACCCG--GAGCAAGTCGGAGCTGGAGCCGAGGCCCGA 170 consensus_14953#3 CACC--GAGTCGCAGCA--GGCCA---G--GTGCAAGCCGCCGCCACCGACGCCGTCGCG 113 consensus_14953#2 CATCAAGAGCTTCGTCGACCGCCACTAGACGTGGAGATCAGAGA-AGCGCATCTTCTCCA 156 ** * * * * **** * * * * * * * consensus_14953#0 CTCGGTGTTCTTCACCCTCGACATGCTCGACAAGTTCCTCGCCATGGCGCTC---CCCGA 1125 consensus_14953#1 CTCGGTGTTCTTCACCCTCGACATGCTCGACAAGTTCCTCGCCATGGCGCTC---CCCGA 227 consensus_14953#3 GNNCGAATNCNGTGGCG-CAAGGTGGTGGACGAGGTGTCCGGCTGGCTGCGCGTGTTCGA 172 consensus_14953#2 CCGTACGTGTAGCACCTTCCAGGTTGTGATTGTTTCTCGTCTCGTGTCATGACTGTCCGC 216 * * * * * * * * ** consensus_14953#0 GG-GCGCCACCAAGGACC-ACCCGTACACGTGCCCGATGGGGCCGAACGCGCCGCCGCTG 1183 consensus_14953#1 GG-GCGCCACCAAGGACC-ACCCGTACACGTGCCCGATGGGGCCGAACGCGCCGCCGCTG 285 consensus_14953#3 CG-ACGGCACCGTG-ACC-GCACGTGGACGGGTCCC------CCCGAGGTGCTCCCNNTG 223 consensus_14953#2 CATACGTTGGCCTGAGCTTGACCTTGTGTGTGGCTTGCTGNCCATGTCAAGCCGATATCA 276 ** * * * * * * * * * ** consensus_14953#0 GAGTCCGTCCCGCTGCCGCCGCTGCTGGTCGCCGTCGCCGAGCACGACCTCATCCGGGAC 1243 consensus_14953#1 GAGTCCGTCCCGCTGCCGCCGCTGCTGGTCGCCGTCGCCGAGCACGACCTCATCCGGGAC 345 consensus_14953#3 A----------------------------------------------------------- 224 consensus_14953#2 TGTACGCATTAGTGGTTAAGGACGC----------------------------------- 301 consensus_14953#0 ACCAACCTCGAGTACTGCGACGCGCTGCGCACCGCCGGCAAGGACGTGGAGGTGCTGGTC 1303 consensus_14953#1 ACCAACCTCGAGTACTGCGACGCGCTGCGCACCGCGCGAACGGCCACACGGCTGCACGAC 405 consensus_14953#3 ------------------------------------------------------------ consensus_14953#2 ------------------------------------------------------------ consensus_14953#0 AACCGCGGCATGAGCCACTCCTTCTACCTCAACAAGTACGCCGTCGACATGGACCCGGCC 1363 consensus_14953#1 CTCCCCGGC--GAGCCCAAACCTCCGCGTGTA---------------------------- 435 consensus_14953#3 ------------------------------------------------------------ consensus_14953#2 ------------------------------------------------------------ consensus_14953#0 ACCGGCGAGAGGACCCGGGAGCTCGTCGACGCCATCAAGAGCTTCGTCGACCGCCACTAG 1423 consensus_14953#1 ------------------------------------------------------------ consensus_14953#3 ------------------------------------------------------------ consensus_14953#2 ------------------------------------------------------------ consensus_14953#0 ACGTGGAGATCAGAGAAGCGCATCTTCTCCACCGTACGTGTAGCACCTTCCAGGTTGTGA 1483 consensus_14953#1 ------------------------------------------------------------ consensus_14953#3 ------------------------------------------------------------ consensus_14953#2 ------------------------------------------------------------ consensus_14953#0 TTGTTTCTCGTCTCGTGTCATGACTGTCCGCCATACGTTGGCCTGAGCTTGACCTTGTGT 1543 consensus_14953#1 ------------------------------------------------------------ consensus_14953#3 ------------------------------------------------------------ consensus_14953#2 ------------------------------------------------------------ consensus_14953#0 GTGGCTTGCTGTCCATGTCAAGCCGATATCATGTACGCATCAGTGTTTAGGTACGCGTTT 1603 consensus_14953#1 ------------------------------------------------------------ consensus_14953#3 ------------------------------------------------------------ consensus_14953#2 ------------------------------------------------------------ consensus_14953#0 GAGTAGTTACAAATAAATAATTGGATCATTCCCGAACAGTGGACTAGTTGAAGACTTGAA 1663 consensus_14953#1 ------------------------------------------------------------ consensus_14953#3 ------------------------------------------------------------ consensus_14953#2 ------------------------------------------------------------ consensus_14953#0 GTTGATAGGTCGAGTGTGTGGAGTGTCCAATGATAAAGGGTGGCATTGCATATTTGCATG 1723 consensus_14953#1 ------------------------------------------------------------ consensus_14953#3 ------------------------------------------------------------ consensus_14953#2 ------------------------------------------------------------ consensus_14953#0 TGCATTTAAATCTTTAATTACTCTATCCGCCATATAATGTAAGGTATTTGGTATTTTGGT 1783 consensus_14953#1 ------------------------------------------------------------ consensus_14953#3 ------------------------------------------------------------ consensus_14953#2 ------------------------------------------------------------ consensus_14953#0 CTTCAAATTTGTATCAAAATATAAGAAATTTTATGATCCCAAAATAATTATTTATTCTCT 1843 consensus_14953#1 ------------------------------------------------------------ consensus_14953#3 ------------------------------------------------------------ consensus_14953#2 ------------------------------------------------------------ consensus_14953#0 CACAAAAAAAAA 1855 consensus_14953#1 ------------ consensus_14953#3 ------------ consensus_14953#2 ------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||