These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14963#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 1319 fasta sequence [CACAACCTCGCGTAAACACCCACGAAATTCTCCGCAAAAGATAAAAATAAAATAAAATAAAACCCACCCCCCTTCTCCTCTCCTCCATCTCCTCGCTTCGTCCCGTTCACACCACCACCGTCTCGTCGCCTCGTCGGCGGCGTCTCCTCCGCGCGAGGGTCCCCCCCCAAACCCTAGCCGCCGCCATTGCCACGC-GC-GCGCCCCCCACCCCACGAATGGAAGGAGGC-GGAGGC-GGAGGC-GGAGGC-GGTGGC-GGAGGTGGAGGTGGAGGAGGCGGAGGCGGGGCACCGTACGCCACGCGCACGGCGGAGGAGGTCTTCCGCGACCTCCGGGGCCGCCGCGCC-GGCA-TGATC-AAGGCCCTCACC-ACCGATGTGGAGAAGTTTTACAAGCTCTGCGACCCTGAAAAGGAGAACTTGTGCCTTTATGGATATCCTAATGAAACAT-GGGAGGTGACCTT-GCCAGCTGAGGAAGTGCCCCCAGAGATCCCTGAACCAGCATTGGGAATCAACTTCGCTAGGGATGGCATGAATGAGAAAGACTGG-TTGGCGTTAGTCGCAGTTCACAGTGATTCCTGGTTACTGTCTGTTGCATTCTACTTTGGAGCCCGATTTGGTTTTGACAGAGAAGCAAGGAGGCGACTCTTTAATATGATAAACAATTTGCCAACAATATTTGAGGTAGTGACAGGAGCCGCTAAGAAGCAGGCGA-AAGAAAAGACTCCCAACAGTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGTGCAGTCAAAAGCTGAGTCTCGTTCGAAATCTAAGCTGTCAGCCCCCA-AGGATGAAGAGGGAAGTGGTGATGATGAGGGAGAGGAAGA-GGAGGATGACCATGACAACAC-TTTGTGT-GGGACCTGTGGAACCAACGATGGCAAGGACG-AGTTCTGGATCTGTTGCGATAACTG-CGAGAAGTGGTATCATGGGAAGTGCGTCAAGATCACACC-CGCTCGT-GCCGAGCATATCAAGCAGTA-CAAGTGCCCGGACTGCACCAACAAGAGGGCCCGGGCATGAGTAACAAGAAGCTGTGTCGAACTGTGTTAGAGTGGAGTTGTCAATCTCCGGATGTCATGATCTCTTAGATATTATCTTGCCCTAGCTTTTCTAGTTTGTAAGCTTGTCTCTAATTTAATTTTAAACTGTAACTGTTGATTAACCTACCTGTGTTTAAAGCTTCATCTTTCCTGTGTTAATTCTAGCATTCATAGTGTGTAAACTTGCACATCTTGTGTCAACTGAAGCCTGAAGGTACGGCGGCTCCCCTGACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK071139 [CACAACCTCGCGTAAACACCCACGAAATTCTCCGCAAAAGATAAAAATAAAATAAAATAAAACCCACCCCCCTTCTCCTCTCCTCCATCTCCTCGCTTCGTCCCGTTCACACCACCACCGTCTCGTCGCCTCGTCGGCGGCGTCTCCTCCGCGCGAGGGTCCCCCCCCAAACCCTAGCCGCCGCCATTGCCACGC GC GCGCCCCCCACCCCACGAATGGAAGGAGGC GGAGGC GGAGGC GGAGGC GGTGGC GGAGGTGGAGGTGGAGGAGGCGGAGGCGGGGCACCGTACGCCACGCGCACGGCGGAGGAGGTCTTCCGCGACCTCCGGGGCCGCCGCGCC GGCA TGATC AAGGCCCTCACC ACCGATGTGGAGAAGTTTTACAAGCGCTGCGACCCTGAAAAGGAGAACTTGTGCCTTTATGGATATCCTAATGAAACAT GGGAGGTGACCTT GCCAGCTGAGGAAGTGCCCCCAGAGATCCCTGAACCAGCATTGGGAATCAACTTCGCTAGGGATGGCATGAATGAGAAAGACTGG TTGGCGTTAGTCGCAGTTCACAGTGATTCCTAGTTACTGTCTGTTGCATTCTACTTTGGAGCCCGATTTGGTTTTGACAGAGAAGCAAGGAGGCGACTCTTTAATATGATAAACAATTTGCCAACAATATTTGAGGTAGTGACAGGAGCCGCTAAGAAGCAGGCGA AAGAAAAGACTCCCAACAGTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGTGCAGTCAAAAGCTGAGTCTCGTTCGAAATCTAAGCTGTCAGCCCCCA AGGATGAAGAGGGAAGTGGTGATGATGAGGGAGAGGAAGA GGAGGATGACCATGACAACAC TTTGTGT GGGACCTGTGGAACCAACGATGGCAAGGACG AGTTCTGGATCTGTTGCGATAACTG CGAGAAGTGGTATCATGGGAAGTGCGTCAAGATCACACC CGCTCGT GCCGAGCATATCAAGCAGTA CAAGTGCCCGGACTGCACCAACAAGAGGGCCCGGGCATGAGTAACAAGAAGCTGTGTCGAACTGTGTTAGAGTGGAGTTGTCAATCTCCGGATGTCATGATCTCTTAGATATTATCTTGCCCTAGCTTTTCTAGTTTGTAAGCTTGTCTCTAATTTAATTTTAAACTGTAACT TTGATTAACCTACCTGTGTTTAAAGCTTCATCTTTCCTGTGTTAATTCTAGCATTCATAGTGTGTAAACTTGCACATCTTGTGTCAACTGAAGCCTGAAGGTACGGCGGC ] [+] EMBL AF045571 [ ACCACCACCGTCTCGTCGCCTCGTCGGCGGCGTCTCCTCCGCGCGAGGGTCCCCCCCCAAACCCTAGCCGCCGCCATTGCCACGC GC GCGCCCCCCACCCCACGAATGGAAGGAGGC GGAGGC GGAGGC GGAGGC GGTGGC GGAGGTGGAGGTGGAGGAGGCGGAGGCGGGGCACCGTACGCCACGCGCACGGCGGAGGAGGTCTTCCGCGACCTCCGGGGCCGCCGCGCC GGCA TGATC AAGGCCCTCACC ACCGATGTGGAGAAGTTTTACAAGCTCTGCGACCCTGAAAAGGAGAACTTGTGCCTTTATGGATATCCTAATGAAACAT GGGAGGTGACCTT GCCAGCTGAGGAAGTGCCCCCAGAGATCCCTGAACCAGCATTGGGAATCAACTTCGCTAGGGATGGCATGAATGAGAAAGACTGG TTGGCGTTAGTCGCAGTTCACAGTGATTCCTGGTTACTGTCTGTTGCATTCTACTTTGGAGCCCGATTTGGTTTTGACAGAGAAGCAAGGAGGCGACTCTTTAATATGATAAACAATTTGCCAACAATATTTGAGGTAGTGACAGGAGCCGCTAAGAAGCAGGCGA AAGAAAAGACTCCCAACAGTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGT GTCAAAAGCTGAGTCTCGTTCGAAATCTAAGCTGTCAGCCCCCA AGGATGAAGAGGGAAGTGGTGATGATGAGGGAGAGGAAGA GGAGGATGACCATGACAACAC TTTGTGT GGGACCTGTGGAACCAACGATGGCAAGGACG AGTTCTGGATCTGTTGCGATAACTG CGAGAAGTGGTATCATGGGAAGTGCGTCAAGATCACACC CGCTCGT GCCGAGCATATCAAGCAGTA CAAGTGCCCGGACTGCACCAACAAGAGGGCCCGGGCATGAGTAACAAGAAGCTGTGTCGAACTGTGTTAGAGTGGAGTTGTCAATCTCCGGATGTCATGATCTCTTAGATATTATCTTGCCCTAGCTTTTCTAGTTTGTAAGCTTGTCTCTAATTTAATTTTAAACTGTAACTGTTGATTAACCTACCTGTGTTTAAAGCTTCATCTTTCCTGTGTTAAaaaaaa ] [+] EMBL AF047428 [ CACCACCGTCTCGTCGCCTCGTCGGCGGCGTCTCCTCCGCGCGAGGGTCCCCCCCCAAACCCTAGCCGCCGCCATTGCCACGC GC GCGCCCCCCACCCCACGAATGGAAGGAGGC GGAGGC GGAGGC GGAGGC GGTGGC GGAGGTGGAGGTGGAGGAGGCGGAGGCGGGGCACCGTACGCCACGCGCACGGCGGAGGAGGTCTTCCGCGACCTCCGGGGCCGCCGCGCC GGCA TGATC AAGGCCCTCACC ACCGATGTGGAGAAGTTTTACAAGCTCTGCGACCCTGAAAAGGAGAACTTGTGCCTTTATGGATATCCTAATGAAACAT GGGAGGTGACCTT GCCAGCTGAGGAAGTGCCCCCAGAGATCCCTGAACCAGCATTGGGAATCAACTTCGCTAGGGATGGCATGAATGAGAAAGACTGG TTGGCGTTAGTCGCAGTTCACAGTGATTCCTGGTTACTGTCTGTTGCATTCTACTTTGGAGCCCGATTTGGTTTTGACAGAGAAGCAAGGAGGCGACTCTTTAATATGATAAACAATTTGCCAACAATATTTGAGGTAGTGACAGGAGCCGCTAAGAAGCAGGCGA AAGAAAAGACTCCCAACAGTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGTGCAGTCAAAAGCTGAGTCTCGTTCGAAATCTAAGCTGTCAGCCCCCA AGGATGAAGAGGGAAGTGGTGATGATGAGGGAGAGGAAGA GGAGGATGACCATGACAACAC TTTGTGT GGGACCTGTGGAACCAACGATGGCAAGGACG AGTTCTGGATCTGTTGCGATAACTG CGAGAAGTGGTATCATGGGAAGTGCGTCAAGATCACACC CGCTCGT GCCGAGCATATCAAGCAGTA CAAGTGCCCGGACTGCACCAACAAGAGGGCCCGGGCATGAGTAACAAGAAGCTGTGTCGAACTGTGTTAGAGTGGAGTTGTCAATCTCCGGATGTCATGATCTCTTAGATATTATCTTGCCCTAGCTTTTCTAGTTTGTAAGCTTGTCTCTAATTTAATTTTAAACTGTAACTGTTGATTAACCTACCTGTGTTTAAAGCTTCATCTTTCCTGTGTTAATTCTAGCATTCATAGTGTGTAAACTTGCAaaaaaaa ] [+] EMBL OSS14363A [ CACCACCGTCTCGTCGCCTCGTCNGCTGCGTCTCCTCCGCGCGAGGGTCCCCCCCCAAACCCTAGCCTCCGCCATTNCCACGC GC GCGCCCCCCACCCCACGAATGGAAGGAGGC GGAGGC GGAGGC GGAGGC GGTNGC GGAGGTGGAGGTGGAGGAGGCGGAGGCGGGGCACCGTACGCCACG GCACGGCGGAGGAGGTCTTCCGCGACCTCCGGGGCCGCCGCGCC GCANTGATC AAGGCCCTCACC ACCGATGTGGAGAAGTTTTACAAGCTCTGCGACCCTGAAAAGGAGAACTTGTGCCTTTATGGATATCCTAATGAAACATGGGGAGGTGACCTTNNCCAGCTGAGGAAGTTCCCCCAGAGATCCCTGAACCAGCATTGGGAATCAACTTCGCTAGGGATGGCATGAATt ] [+] EMBL AU082688 [ TCGCCTCGTCGGCGGCGTCTCCTCCGCGCGAGGGTCCCCCCCCAAACCCTAGCCGCCGCCATTGCNACGC GC GCGCCCCCCACCCCACGAATGGAAGGNGGC GGAGGC GGAGGC GGAGGC GGTGGC GGAGGTGGAGGTGGAGGAGGCGGAGGCGGGGCACCGTACGCCACGCGCACGGCGGAGGAGGTCTTCCGCGACTTTCGGGGCCGCCGCGCCGGGNA TGATCAAAGGNCCTCACCAACCGATGTGG ] [+] EMBL AU173000 [ GTCGGCGGCGTCTCCTCCGCGCGAGGGTCCCCCCCCAAACCCTAGCCGCCGCCATTGCCACGCAGCAGCGCCCCCCACCCCACGAATGGAAGGAGGCAGGAGGCAGGAGGCAGGAGGCAGGTGGCAGGAGGTGGAGGTGGAGGAGGCGGAGGCGGGGCACCGTACGCCACGCGCACGGCGGAGGAGGTCTTCCGCGACCTCCGGGGCCGCCGCGCC GGCA TGATC AAGGCCCTCACC ACCGATGTGGAGAAGTTTTACAAGCTCTGCGACCCTGAAAAGGAGAACTTGTGCCTTTATGGATATCCTAATGAAACAT GGGAGGTGACCTT GCCAGCTGAGGAAGTGCCCCCAGAGATCCCTGAACCAGCATTGGGAATCAACTTCGCTAGGGATGGCATGAATGAGAAAGACTGGTTTGGCGTTAGTCGCA ] [+] EMBL BP184955 [ acGAGGGAGGC GGAGGC GGAGGC GGAGGC GGTGGC GGAGGTGGAGGTGGAGGAGGCGGAGGCGGGGCACCGTACGCCACGCGCACGGCGGAGGAGGTCTTCCGCGACCTCCGGGGCCGCCGCGCC GGCA TGATC AAGGCCCTCACC ACCGATGTGGAGAAGTTTTACAAGCTCTGCGACCCTGAAAAGGAGAACTTGTGCCTTTATGGATATCCTAATGAAACAT GGGAGGTGACCTT GCCAGCTGAGGAAGTGCCCCCAGAGATCCCTGAACCAGCATTGGGAATCAACTTCGCTAGGGATGGCATGAATGAGAAAGACTGG TTGGCGTTAGTCGCAGTTCACAGTGATTCCTGGTTACTGTCTGTTGCATTCTACTTTGGAGCCCGATTTGGTTTTGACAGAGAAGCAAGGAGGCGACTCTTTAATATGATAAACAATTTGCCAACAATATTTGAGGTAGTGACAGGAGCCGCTAAGAAGCAGGCGA AAGAAAAGACTCCCAACAGTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGTGCAGTCAAAAGCTGAGTCTCGTTCGAAATCTAAGCTGTCAGCCCCCA AGGATGAAGAGGGAAGTGGTGATGATGAGGGAGAGGAAGA GGAGGAT ] [+] EMBL CF325688 [ CACGGCGGAGGAGGTCTTCCGCGACCTCCGGGGCCGCCGCGCC GGCA TGATC AAGGCCCTCACC ACCGATGTGGAGAAGTTTTACAAGCTCTGCGACCCTGAAAAGGAGAACTTGTGCCTTTATGGATATCCTAATGAAACAT GGGAGGTGACCTT GCCAGCTGAGGAAGTGCCCCCAGAGATCCCTGAACCAGCATTGGGAATCAACTTCGCTAGGGATGGCATGAATGAGAAAGACTGG TTGGCGTTAGTCGCAGTTCACAGTGATTCCTGGTTACTGTCTGTTGCATTCTACTTTGGAGCCCGATTTGGTTTTGACAGAGAAGCAAGGAGGCGACTCTTTAATA ] [+] EMBL AU082754 [ GAAAGACTGG TTGGCGTTAGTCCCAGTTCACAGTGATTCCTGGTTACTGTCTGTTGCATTCTACTTTGGAGCCCGATTTGGTTTTGACAGAGAAGCAAGGAGGCGACTCTTTAATATGATAAACAATTTGCCAACAATATTTGAGGTAGTGACAGGAGCCGCTAAGAAGCAGGCGA AAGAAAAGACTCCCAACAGTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGTGCAGTCAAAAGCTGAGTCTCGTTCGAAATCTAAGCTGTCAGCCCCCA AGGATGAAGAGGGAAGTGGTGATGATGAGGGAGAGGAAGA GGAGGATGACCATGACAACAC TTTGTGT GGGACCTGTGGAACCAACGATGGCAAGGACG AGTTCTGGATCTGTTGCGATAACTG CGAGAAGTGGTATCATGGGAAGTGCGTCAAGATCACACCNCG TCGT GCCGAGCATATCAAGCAGTA CAAGTGCCCGGACTGCACCAACAAGAGGGCCCGGGCATGAGTAACAAGAAGCTGTGTCGAACTGTGTTAGAGTGGAGTTGTCAATCTCCGGATGTCATGATCTCTTAGATATTATCTTGCCCTAGCTTTTCTAGTTTGTAAGCTTGTCTCTAATTTAATTTTAAACTGTAACTGTTGATTAACCTACCTGTGTTTAAAGCTTCATCTTTCCTGTGTTAATTCTAGCAaaaa ] [+] EMBL C27366 [ GGCGTTAGTCGCAGTTCACAGTGATTCCTGGTTACTGTCTGTTGCATTCTACTTTGGAGCCCGATTTGGTTTTGACAGAGAAGCAAGGAGGCGACTCTTTAATATGATAAACAATTTGCCAACAATATTTGAGGTAGTGACAGGAGCCGCTAAGAAGCAGGCGANAAGAAAAGACTCCCAACAGTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGTGCAGTCAAAAGCTGAGTCTCGTTCGAAATCTAAGCTGTCAGCCCCCA AGGATGAAGAGGGAAGTGGTGATGATGAGGGAGAGGAAGA GGAGGATGACCATGACAACACTTTTGTGTGGGGACCTGTGG ACCAACGATGGCAAGGACG AGTTCTNGATCTGTTGCGATAACTT CGAGAAGTTGTATCATGGGANGTGCGT ] [+] EMBL AK058384 [ GGCGACTCTTTAATATGATAAACAATTTGCCAACAATATTTGAGGTAGTGACAGGAGCCGCTAAGAAGCAGGCGA AAGAAAAGACTCCCAACAGTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGTGCAGTCAAAAGCTGAGTCTCGTTCGAAATCTAAGCTGTCAGCCCCCA AGGATGAAGAGGGAAGTGGTGATGATGAGGGAGAGGAAGA GGAGGATGACCATGACAACAC TTTGTGT GGGACCTGTGGAACCAACGATGGCAAGGACG AGTTCTGGATCTGTTGCGATAACTG CGAGAAGTGGTATCATGGGAAGTGCGTCAAGATCACACC CGCTCGT GCCGAGCATATCAAGCAGTA CAAGTGCCCGGACTGCACCAACAAGAGGGCCCGGGCATGAGTAACAAGAAGCTGTGTCGAACTGTGTTAGAGTGGAGTTGTCAATCTCCGGATGTCATGATCTCTTAGATATTATCTTGCCCTAGCTTTTCTAGTTTGTAAGCTTGTCTCTAATTTAATTTTAAACTGTAACTGTTGATTAACCTACCTGTGT ] [+] EMBL BI807479 [ AGAGCAACAAGCCTAGTTCGAAAGTGCAGTCAAAA CTGAGTCTCGTTCGAAATCTAA CTGTCAGCCCCCACAGGATGAAGAGGGAA TGGTGATGATGAGGGAGAGGAAGATGGAGGATGACCATGACAACAC TTTGTGT GGGACCTGTGGAACCCACGATGGCAAGGACG AGTTCTGGATCTGTTGCGATAACTG CGAGAA TGGTATCATGGGAAGTGCGTCAAGATCACACC CGCTCGT GCCGAGCATATCAAGCAGTA CAAGTGCCCGGACTGCACCAACAAGAGGACCCGGGCATGAGTAACAAGAAGTTGTGTCGAACTGTGTTAGAGTGGAGTTGTCAATCTCCGGATGTCATGATCTCTTAGATATTATCTTGCCCTAGCTTTTCTAGTTTGTAAGCTTGTCTCTAATTTAATTTTAAACTGTAACTGTTGATTAACCTACCTGTGTTTAAAGCTTCATCTTTCCTGTGTTAAaaaaaaaa ] [+] EMBL AU071045 [ AGGATGAAGAGGGAAGTGGTGATGATGAGGGAGAGGAAGA GGAGGATGACCATGACAACAC TTTGTGT GGGACCTGTGGAACCAACGATGGCAAGGACG AGTTCTGGATCTGTTGCGATAACTG CGAGAAGTGGTATCATGGGAAGTGCGTCAAGATCACACC CGCTCGT GCCGAGCATATCAAGCAGTA CAAGTGCCCGGACTGCACCAACAAGAGGGCCCGGGCATGAGTAACAAGAAGCTGTGTCGAACTGTGTTAGAGTGGAGTTGTCAATCTCCGGATGTCATGATCTCTTAGATATTATCTTGCCCTAGCTTTTCTAGTTTGTAAGCTTGTCTCTAATTTAATTTTAAACTGTAACTGTTGATTAACCTACCTGTGTTTAAAGCTTCATCTTTCCTGTGTTAATTCTAGCATTCATAGTGTGTAAACTTGCACATCTTGTGTCAACTGAAGCCTGAAGGTACGGCGGCTCCCCTGACCAAAAAAA ] [+] EMBL BM420826 [ GAGGGAAGTGGTGATGATGAGGGAGAGGAAGA GGAGGATGACCATGAC ACAC TTTGTGT GGGACCTGTGGAACC ACGATGGCAAGGACGTAGTTCTGGATCTGTTGCGATAACTGTCGAGAAGTGGTATCATGGGAAGTGCGTCAAGATCACACC CGCTCGTCGCCGAGCATATCAAGCAGTA CAAGTGCCCGGACTGCACCAACAAGAGGACCCGGGCATGAGTAACCAGAA TTCNTTCGAACTGTGTTAGA TGGA TTGTCAATCTCCGGATGTCATGATCTCTTAGATATTATCTTCCCCTAGCTTTTCTAGTTTGTAACCTTGTCTCTAATTTAATTTTAAACTGTAACTGTTGATTAACCTACCTGT TTNAAACCTTCATCTTTCCTGTGTAAAaaa ] [+] EMBL AK058498 [ AGGACG AGTTCTGGATCTGTTGCGATAACTG CGAGAAGTGGTATCATGGGAAGTGCGTCAAGATCACACC CGCTCGT GCCGAGCATATCAAGCAGTA CAAGTGCCCGGACTGCACCAACAAGAGGGCCCGGGCATGAGTAACAAGAAGCTGTGTCGAACTGTGTTAGAGTGGAGTTGTCAATCTCCGGATGTCATGATCTCTTAGATATTATCTTGCCCTAGCTTTTCTAGTTTGTAAGCTTGTCTCTAATTTAATTTTAAACTGTAACTGTTGATTAACCTACCTGTGTTTAAAGCTTCATCT ] [+] EMBL C27940 [ CTGGNTCTGTTGCGATAACTG CNAGAAGTGGTATCATGGGAAGTGCGTCAAGATCACACC CGCTCGT NCCGAGCATATCANGCAGTA CAAGGNCCCGGACTGCACCAACAAGAGGGCCCGGGCATGAGTAACAAGAAGCTGTGTCGAACTGTGTTAGAGTGGAGTTGTCAATCTCCGGATGTCATGNTCTCTTAGATATTATCTTGCCCTAGCTTTTCTAGTTTG ] [+] EMBL AU182846 [ AAGATCNCACC CGCTCGT GCCGAGCATATCAAGCAGTACCAAGTGCCCGGNCTGCACCAACAAGAGGGCCCGGGCATNAGTAACAAGAAGCTGTGTCGAACTGTGTTAGAGTGGAGTTGTCAATCTCCGGATGTCATGATCTCTTAGATATTATCTTGCCCTAGCTTTTCTAGTTTGTAAGCTTGTCTCTAATTTAATTTTAAACTGTAACTGTTGATTAACCTACCTGTGTTTAAAGCTTCATCTTTCCTGTGTTAATTCTAGCATTCATAGTGTGTAAACTTGCACATCTTGTGTCAACTGAAGCCTGAAGGTACGGCGGCTCCCCTGCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_14963#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 448 fasta sequence [GCCACGGGCCGAGCCAAGGGGGATGCCAAGGCCGAGTTTTGGATTTGTTCCGATAACTCCGAGAAGTGGTATCATGGGAAGTGCGTCAAGATCCCCCCCGCTCGTGCCGAGCATATCAAGCAGTCCAAGTGCCCGGGCTGCACCAACAAGAGGCCCCGGGCCTGAGTAACAAGAAGTTGTGTCGAACTGTGTTAGAGTGGAGTTGTCAATCTCCGGATGTCATGATCTTTTAGATATTATCTTGCCCTAGCTTTTTTAGTTTGTAAGCTTGTCTCTAATTTAATTTTAGACGGTAACTGTTGATTAACCTCCCTGTGTTTAAAGCTTCATCTTTCCTGTGTTAATTCTAGCCTTCATAGTGTGTAAACTTGCCCATTTTGTGTCAACTGAAGCCTGAAGGTATTGCGGCTCCCCTGGCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA763693 [GCCACGGGCCGAGCCAAGGGGGATGCCAAGGCCGAGTTTTGGATTTGTTCCGATAACTCCGAGAAGTGGTATCATGGGAAGTGCGTCAAGATCCCCCCCGCTCGTGCCGAGCATATCAAGCAGTCCAAGTGCCCGGGCTGCACCAACAAGAGGCCCCGGGCCTGAGTAACAAGAAGTTGTGTCGAACTGTGTTAGAGTGGAGTTGTCAATCTCCGGATGTCATGATCTTTTAGATATTATCTTGCCCTAGCTTTTTTAGTTTGTAAGCTTGTCTCTAATTTAATTTTAGACGGTAACTGTTGATTAACCTCCCTGTGTTTAAAGCTTCATCTTTCCTGTGTTAATTCTAGCCTTCATAGTGTGTAAACTTGCCCATTTTGTGTCAACTGAAGCCTGAAGGTATTGCGGCTCCCCTGGCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_14963#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 399 fasta sequence [ATGATGAGGGAGAGGAAGAGGAGGATGACCATGNCAACACTTTGTGTGGGACCTGTGGAACCAACGATGGCAAGGACGAGTTCTGGATCTGTTGCGATAACTGCGAGAAGTGGTATCATGGGAAGTGCGTCAAGATCACACTTCGTCGTGCCGAGCATATCAAGCAGTACAAGTGCCCGGNCTGCACCAACAAGAGGGCCCGGGCATGAGTAACAAGAAGCTGTGTCGAACTGTGTTAGAGTGGAGTTGTCAATCTCCGGATGTCATGATCTCTTAGATATTATCTTGCCCTAGCTTTTCTAGTTTGTAAGCTTGTCTCTAATTTAATTTTAAACTGTAACTGTTGATTAACCTACCTGTGTTTAAAGCTTCATCTTTCCTGTGTTAAAAAAAAAAAAA] [+] EMBL AU030871 [ATGATGAGGGAGAGGAAGAGGAGGATGACCATGNCAACACTTTGTGTGGGACCTGTGGAACCAACGATGGCAAGGACGAGTTCTGGATCTGTTGCGATAACTGCGAGAAGTGGTATCATGGGAAGTGCGTCAAGATCACACTTCGTCGTGCCGAGCATATCAAGCAGTACAAGTGCCCGGNCTGCACCAACAAGAGGGCCCGGGCATGAGTAACAAGAAGCTGTGTCGAACTGTGTTAGAGTGGAGTTGTCAATCTCCGGATGTCATGATCTCTTAGATATTATCTTGCCCTAGCTTTTCTAGTTTGTAAGCTTGTCTCTAATTTAATTTTAAACTGTAACTGTTGATTAACCTACCTGTGTTTAAAGCTTCATCTTTCCTGTGTTAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14963#0 CACAACCTCGCGTAAACACCCACGAAATTCTCCGCAAAAGATAAAAATAAAATAAAATAA 60 consensus_14963#2 ------------------------------------------------------------ consensus_14963#1 ------------------------------------------------------------ consensus_14963#0 AACCCACCCCCCTTCTCCTCTCCTCCATCTCCTCGCTTCGTCCCGTTCACACCACCACCG 120 consensus_14963#2 ------------------------------------------------------------ consensus_14963#1 ------------------------------------------------------------ consensus_14963#0 TCTCGTCGCCTCGTCGGCGGCGTCTCCTCCGCGCGAGGGTCCCCCCCCAAACCCTAGCCG 180 consensus_14963#2 ------------------------------------------------------------ consensus_14963#1 ------------------------------------------------------------ consensus_14963#0 CCGCCATTGCCACGCGCGCGCCCCCCACCCCACGAATGGAAGGAGGCGGAGGCGGAGGCG 240 consensus_14963#2 ------------------------------------------------------------ consensus_14963#1 ------------------------------------------------------------ consensus_14963#0 GAGGCGGTGGCGGAGGTGGAGGTGGAGGAGGCGGAGGCGGGGCACCGTACGCCACGCGCA 300 consensus_14963#2 ------------------------------------------------------------ consensus_14963#1 ------------------------------------------------------------ consensus_14963#0 CGGCGGAGGAGGTCTTCCGCGACCTCCGGGGCCGCCGCGCCGGCATGATCAAGGCCCTCA 360 consensus_14963#2 ------------------------------------------------------------ consensus_14963#1 ------------------------------------------------------------ consensus_14963#0 CCACCGATGTGGAGAAGTTTTACAAGCTCTGCGACCCTGAAAAGGAGAACTTGTGCCTTT 420 consensus_14963#2 ------------------------------------------------------------ consensus_14963#1 ------------------------------------------------------------ consensus_14963#0 ATGGATATCCTAATGAAACATGGGAGGTGACCTTGCCAGCTGAGGAAGTGCCCCCAGAGA 480 consensus_14963#2 ------------------------------------------------------------ consensus_14963#1 ------------------------------------------------------------ consensus_14963#0 TCCCTGAACCAGCATTGGGAATCAACTTCGCTAGGGATGGCATGAATGAGAAAGACTGGT 540 consensus_14963#2 ------------------------------------------------------------ consensus_14963#1 ------------------------------------------------------------ consensus_14963#0 TGGCGTTAGTCGCAGTTCACAGTGATTCCTGGTTACTGTCTGTTGCATTCTACTTTGGAG 600 consensus_14963#2 ------------------------------------------------------------ consensus_14963#1 ------------------------------------------------------------ consensus_14963#0 CCCGATTTGGTTTTGACAGAGAAGCAAGGAGGCGACTCTTTAATATGATAAACAATTTGC 660 consensus_14963#2 ------------------------------------------------------------ consensus_14963#1 ------------------------------------------------------------ consensus_14963#0 CAACAATATTTGAGGTAGTGACAGGAGCCGCTAAGAAGCAGGCGAAAGAAAAGACTCCCA 720 consensus_14963#2 ------------------------------------------------------------ consensus_14963#1 ------------------------------------------------------------ consensus_14963#0 ACAGTAGTAGCAAGAGCAACAAGCCTAGTTCGAAAGTGCAGTCAAAAGCTGAGTCTCGTT 780 consensus_14963#2 ------------------------------------------------------------ consensus_14963#1 ------------------------------------------------------------ consensus_14963#0 CGAAATCTAAGCTGTCAGCCCCCAAGGATGAAGAGGGAAGTGGTGATGATGAGGGAGAGG 840 consensus_14963#2 ---------------------------------------------ATGATGAGGGAGAGG 15 consensus_14963#1 ------------------------------------------------------------ consensus_14963#0 AAGAGGAGGATGACCATGACAACACTTTGTGTGGGACCTGTGGAACCAACG---ATGGCA 897 consensus_14963#2 AAGAGGAGGATGACCATGNCAACACTTTGTGTGGGACCTGTGGAACCAACG---ATGGCA 72 consensus_14963#1 --------------------------------GCCACGGGCCGAGCCAAGGGGGATGCCA 28 * ** * ** **** * *** ** consensus_14963#0 AGGACGAGTTCTGGATCTGTTGCGATAACTGCGAGAAGTGGTATCATGGGAAGTGCGTCA 957 consensus_14963#2 AGGACGAGTTCTGGATCTGTTGCGATAACTGCGAGAAGTGGTATCATGGGAAGTGCGTCA 132 consensus_14963#1 AGGCCGAGTTTTGGATTTGTTCCGATAACTCCGAGAAGTGGTATCATGGGAAGTGCGTCA 88 *** ****** ***** **** ******** ***************************** consensus_14963#0 AGATCACACCCGCTCGTGCCGAGCATATCAAGCAGTACAAGTGCCCGGACTGCACCAACA 1017 consensus_14963#2 AGATCACACTTCGTCGTGCCGAGCATATCAAGCAGTACAAGTGCCCGGNCTGCACCAACA 192 consensus_14963#1 AGATCCCCCCCGCTCGTGCCGAGCATATCAAGCAGTCCAAGTGCCCGGGCTGCACCAACA 148 ***** * * *********************** *********** *********** consensus_14963#0 AGAGGGCCCGGGCATGAGTAACAAGAAGCTGTGTCGAACTGTGTTAGAGTGGAGTTGTCA 1077 consensus_14963#2 AGAGGGCCCGGGCATGAGTAACAAGAAGCTGTGTCGAACTGTGTTAGAGTGGAGTTGTCA 252 consensus_14963#1 AGAGGCCCCGGGCCTGAGTAACAAGAAGTTGTGTCGAACTGTGTTAGAGTGGAGTTGTCA 208 ***** ******* ************** ******************************* consensus_14963#0 ATCTCCGGATGTCATGATCTCTTAGATATTATCTTGCCCTAGCTTTTCTAGTTTGTAAGC 1137 consensus_14963#2 ATCTCCGGATGTCATGATCTCTTAGATATTATCTTGCCCTAGCTTTTCTAGTTTGTAAGC 312 consensus_14963#1 ATCTCCGGATGTCATGATCTTTTAGATATTATCTTGCCCTAGCTTTTTTAGTTTGTAAGC 268 ******************** ************************** ************ consensus_14963#0 TTGTCTCTAATTTAATTTTAAACTGTAACTGTTGATTAACCTACCTGTGTTTAAAGCTTC 1197 consensus_14963#2 TTGTCTCTAATTTAATTTTAAACTGTAACTGTTGATTAACCTACCTGTGTTTAAAGCTTC 372 consensus_14963#1 TTGTCTCTAATTTAATTTTAGACGGTAACTGTTGATTAACCTCCCTGTGTTTAAAGCTTC 328 ******************** ** ****************** ***************** consensus_14963#0 ATCTTTCCTGTGTTAATTCTAGCATTCATAGTGTGTAAACTTGCACATCTTGTGTCAACT 1257 consensus_14963#2 ATCTTTCCTGTGTTAAAAAAAAAAAAA--------------------------------- 399 consensus_14963#1 ATCTTTCCTGTGTTAATTCTAGCCTTCATAGTGTGTAAACTTGCCCATTTTGTGTCAACT 388 **************** * consensus_14963#0 GAAGCCTGAAGGTACGGCGGCTCCCCTGACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1317 consensus_14963#2 ------------------------------------------------------------ consensus_14963#1 GAAGCCTGAAGGTATTGCGGCTCCCCTGGCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAA 448 consensus_14963#0 AA 1319 consensus_14963#2 -- consensus_14963#1 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||