These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14975#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1008 fasta sequence [GCCTCACTAACCTCTGCTTCTTCTTAAGGTAGAGAGAGAAATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTCAGGATCGACGAGACACCAGCGAAGACGTTGAGGCGCGCACGTGGGCAGCCCGCGCGTCCCCTCCCCCATCGCCGCCGTGCTGCTTAGATCCGTCGAGCTCCGGTCCCGCCGTTTCTTGCGGCGGCGAGCGAGCGAGCGAGCACAAGGAGTTCTTGCTGCGCCTGGGAGGAGGAGGAGGAGGTGCAGCACGATGGCTGTGGACCGTGGGCTCCTCCTGC-TCGTCGTCTCGGCCGCCGTCCTCGTCGGGCTCGCCTCCGCGTCCCCCTTCA-TTTCCGACAGCGTGTTCCTGGGGAGCGTCGGATCTACGGGGAGGAGCTTGCTGCAGGCCAAGAAGAATTGCCCTGTGAATTTTGAGTTCCAAAAC-TACACAATAATCACAAGCAAGTGCAAAGGGCCACGGTTTCCTGCTAAACAGTGCTGCGATGCTTTCAAGGAATTCGCAT-GCCCATTTAATGAATATATCAACGACGAGAGCAATGACTGTGCATCAACAATGTTCAGCTACATCAACCTCTATGGCAAGTATCCACCTGGTCTGTTTGCAAACGAGTGCCGAGAAGGCAAGCTA-GGTCTTTCTTGCGAAGGCGTTTCCCAAAAAGATAGTGTCGTTTCAAGTGCTGGCCAGCAAGCTCAGAGCAGCTTGCTTGCTTTCATCATGCTGACCTTTGGACTAGCTGCATTGTGGTTCCATTGAGTTATTATGTCTTCCATTTATCCAAAGTTGGTGTGCTGTTGTAACCAATGAGGATTGAGTTAGTTCACCCGGCTGGGCATTTTCCTTTTGCGTGTAAAATCCTTTGTAATTTATGGCAGAGGCTACGTATTATCTGGAATCTCACTTCTCGGTTGACTACTTAGAACTCACCTTCTGTC-GCTGCATTGTAACTGCTACATTATGTTGCATCAAATTCATGTCAAAAAAAAAAAAAAA] [+] EMBL AK061514 [GCCTCACTAACCTCTGCTTCTTCTTAAGGTAGAGAGAGAAATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTCAGGATCGACGAGACACCAGCGAAGACGTTGAGGCGCGCACGTGGGCAGCCCGCGCGTCCCCTCCCCCATCGCCGCCGTGCTGCTTAGATCCGTCGAGCTCCGGTCCCGCCGTTTCTTGCGGCGGCGAGCGAGCGAGCGAGCACAAGGAGTTCTTGCTGCGCCTGGGAGGAGGAGGAGGAGGTGCAGCACGATGGCTGTGGACCGTGGGCTCCTCCTGC TCGTCGTCTCGGCCGCCGTCCTCGTCGGGCTCGCCTCCGCGTCCCCCTTCA TTTCCGACAGCGTGTTCCTGGGGAGCGTCGGATCTACGGGGAGGAGCTTGCTGCAGGCCAAGAAGAATTGCCCTGTGAATTTTGAGTTCCAAAAC TACACAATAATCACAAGCAAGTGCAAAGGGCCACGGTTTCCTGCTAAACAGTGCTGCGATGCTTTCAAGGAATTCGCAT GCCCATTTAATGAATATATCAACGACGAGAGCAATGACTGTGCATCAACAATGTTCAGCTACATCAACCTCTATGGCAAGTATCCACCTGGTCTGTTTGCAAACGAGTGCCGAGAAGGCAAGCTA GGTCTTTCTTGCGAAGGCGTTTCCCAAAAAGATAGTGTCGTTTCAAGTGCTGGCCAGCAAGCTCAGAGCAGCTTGCTTGCTTTCATCATGCTGACCTTTGGACTAGCTGCATTGTGGTTCCATTGAGTTATTATGTCTTCCATTTATCCAAAGTTGGTGTGCTGTTGTAACCAATGAGGATTGAGTTAGTTCACCCGGCTGGGCATTTTCCTTTTGCGTGTAAAATCCTTTGTAATTTATGGCAGAGGCTACGTATTATCTGGAATCTCACTTCTCGGTTGACTACTTAGAACTCACCTTCTGTC GCTGCATTGTAACTGCTACATTATGTTGCATCAAATTCATGTC ] [+] EMBL C73192 [ CCTCACTAACCTCTGCTTCTTCTTAAGGTAGAGAGAGAAATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTCAGGATCGACGAGACACCAGCNAAGACGTTGAGGCGCGCACGTGGGCAGCCCGCGCNTCCCCTCCCCCATCGCCGCCGTGCTGCTTAGATCCGTCGAGCTCCGGTCCCGCCGTTTCTTGCGGCGGCGAGCGAGCNAGCNAGCACAAGGAGTTCTTGCTGCGCCTGGNAGGAGGAGGAGGAGGTGCAGCACGATGGCTGTGGACCGTGGGCTNCTCCTGC TCGTNGTCTCGGCCGCCGTCCTCGTCGGGCTCGCCTCCGNGTCCCCCTTCATTTTCCGACANCGTGTTCCTGGGGAGCGTCGGATCTAC ] [+] EMBL AU162327 [ CTCACTAACCTCTGCTTCTTCTTAAGGTAGAGAGAGAAATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTCAGGATCGACGAGACACCAGCGAAGACGTTGAGGCGCGCACGTGGGCAGCCCGCGCGTCCCCNCCCCCATCGNCGNCGTGCTGCTTANATCCGTCGAGCTCCGGTCCCGCCGTTTCTTGCGGCGGCGANCGAGCGANNGAGCACAAGGAGTTCTTGCTGCGCCTGGGAGGAGGAGG ] [+] EMBL AU057996 [ ACTAACCTCTGCTTCTTCTTAAGGTAGAGAGAGAAATAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCTCAGGATCGACGAGACACCAGCGAAGACGTTGAGGCGCGCACGTGGGCAGCCCGCGCGTCCCCTCCCCCATCGCCGCCGTGCTGCTTAGATCCGTCGAGCTCCGGTCCCGCCGTTTCTTGCGGCGGCGAGCGAGCGAGCGAGCACAAGGAGTTCTTGCTGCGCCTGGGAGGAGGAGGAGGAGGTGCAGCACGATGGCTGTGGACCGTGGGCTCCTCCTGC TCGTCGTCTCGGCCGCCGTCCTCGTCGGGCTCGCCTCCGCGTCCCCCTTCA TTTCCGACAGCGTGTTCCTGGGGAGCGTCGGATCTACGGGGAGGAGCTTGCTGCAGGCCAAGAAGAATTGCCCTGTGAATTTTGAGTTCCAAAAC TACACAATAATCACAAGCAAGTGCAAAGGGCCACGGTTTCCTGCTAAACAGTGCTGCGATGCTTTCAAGGAATTCGCAT GCCCATTTAATGAATATATCAACGACGAGAGCAATGACTGTGCATCAACAATGTTCAGCTACATCAACCTCTATGGCAAGTATCCACCTGGTCTGTTTGCAAANGAGTGCCGAGAAGGCAAGCTAGGGTCTTTCTTGCGAAGGCGTTTCCCAAAAAGATAGTGTCGTTTCAAATGCTGG ] [+] EMBL AK104061 [ AGAGAGAGAGAGCTCAGGATCGACGAGACACCAGCGAAGACGTTGAGGCGCGCACGTGGGCAGCCCGCGCGTCCCCTCCCCCATCGCCGCCGTGCTGCTTAGATCCGTCGAGCTCCGGTCCCGCCGTTTCTTGCGGCGGCGAGCGAGCGAGCGAGCACAAGGAGTTCTTGCTGCGCCTGGGAGGAGGAGGAGGAGGTGCAGCACGATGGCTGTGGACCGTGGGCTCCTCCTGC TCGTCGTCTCGGCCGCCGTCCTCGTCGGGCTCGCCTCCGCGTCCCCCTTCA TTTCCGACAGCGTGTTCCTGGGGAGCGTCGGATCTACGGGGAGGAGCTTGCTGCAGGCCAAGAAGAATTGCCCTGTGAATTTTGAGTTCCAAAAC TACACAATAATCACAAGCAAGTGCAAAGGGCCACGGTTTCCTGCTAAACAGTGCTGCGATGCTTTCAAGGAATTCGCAT GCCCATTTAATGAATATATCAACGACGAGAGCAATGACTGTGCATCAACAATGTTCAGCTACATCAACCTCTATGGCAAGTATCCACCTGGTCTGTTTGCAAACGAGTGCCGAGAAGGCAAGCTA GGTCTTTCTTGCGAAGGCGTTTCCCAAAAAGATAGTGTCGTTTCAAGTGCTGGCCAGCAAGCTCAGAGCAGCTTGCTTGCTTTCATCATGCTGACCTTTGGACTAGCTGCATTGTGGTTCCATTGAGTTATTATGTCTTCCATTTATCCAAAGTTGGTGTGCTGTTGTAACCAATGAGGATTGAGTTAGTTCACCCGGCTGGGCATTTTCCTTTTGCGTGTAAAATCCTTTGTAATTTATGGCAGAGGCTACGTATTATCTGGAATCTCACTTCTCGGTTGACTACTTAGAACTCACCTTCTGTC GCTGCATTGTAACTGCTACATTATGTTGCATCAAATTCATGTCAt ] [+] EMBL CF291967 [ GCTCAGGATCGACGAGACACCAGCGAAGACGTTGAGGCGCGCACGTGGGCAGCCCGCGCGTCCCCTCCCCCATCGCCGCCGTGCTGCTTAGATCCGTCGAGCTCCGGTCCCGCCGTTTCTTGCGGCGGCGAGCGAGCGAGCGAGCACAAGGAGTTCTTGCTGCGCCTGGGAGGAGGAGGAGGAGGTGCAGCACGATGGCTGTGGACCGTGGGCTCCTCCTGC TCGTCGTCTCGGCCGCCGTCCTCGTCGGGCTCGCCTCCGCGTCCCCCTTCA TTTCCGACAGCGTGTTCCTGGGGAGCGTCGGATCTACGGGGAGGAGCTTGCTGCAGGCCAAGAAGAATTGCCCTGTGAATTTTGAGTTCCAAAAC TACACAATAATCACAAGCAAGTGCAAAGGGCCACGGTTTCCTGCTAAACAGTGCTGCGATGCTTTCAAGGAATTCGCATGGCCCATTT ATGAATATATCAACGACGAG ] [+] EMBL AA750754 [ CAGGATCGACGAGACACCAGCGAAGACGTTGAGGCGCGCACGTGGGCAGCCCGCGCGTCCCCTCCCCCATCGCCGCCGTGCTGCTTAGATCCGTCGAGCTCCGGTCCCGCCGTTTCTTGCGGCGGCGAGCGAGCGAGAAAGCACAAGGAGTTCTTGCTGCGCCTAGAAGGAGGAGTAGGAGGTGCAGCACGATGGCTGTGGACCGTGGGCTCCTCCTACTTCGT ] [+] EMBL C27787 [ GACGAGACACCAGCGAAGACGTTGAGGCGCGCACGTGGGCAGCCCGCGCGTCCCCTCCCCCATCGCCGCCGTGCTGCTTAGATCCGTCGAGCTCCGGTCCCGCCGTTTCTTCCGGCGGCGAGCGAGCNAGCNAGCACAAGGAGTTCTTGCTGCGCCTGGNAGGAGGAGGAGGAGGTGCAGCACGATGGCTGTGGACCGTGGGNTNCTCCTGC TCGTCGTCTCGGCCGCCGTCCTCGTCGGGCTCGCCTCCGCGTCCCCCTTCA TTTCCGACAGCNTGTTCCTGGGGAGCGTCGGATCTACGGG ] [+] EMBL AU092617 [ ACCAGCGAAGACGTTGAGGCGCGCACGTGGGCAGCCCGCGCGTCCCCTCCCCCATCGCCGCCGTGCTGCTTAGATCCGTCGAGCTCCGGTCCCGCCGTTTCTTGCGGCGGCGAGCGAGCGAGCGAGCACAAGGAGTTCTTGCTGCGCCTGGGAGGAGGAGGAGGAGGTGCAGCACGATGGCTGTGGACCGTGGGCTCCTCCTGC TCGTCGTCTCGGCCGCCGTCCTCGTCGGGCTCGCCTCCGCGTCCCCCTTCA TTTCCGACAGCGTGTTCCTGGGGAGCGTCGGATCTACGGGGAGGAGCTTGCTGCAGGCCAAGAAGAATTGCCCTGTGAATTTTGAGTTCCAAAAC TACACAATAATCACAAGCAAGTGCAAAGGGCCACGGTTTCCTGCTAAA ] [+] EMBL AU092680 [ CCTTTCA TTTCCGACAGCGTGTTCCTGGGAAGCGTCGGATCTACGGGAAGAAGCTTGCTGCAGGCCAAGAAGAATTGCCCTGTGAATTTTGAGTTCCAAAACTTACCCAATAATCNCAAGCAAGTGCAAAGGGCCACGGTTTCCTGCTAAACAGTGCTGCGATGCTTTCAAGGAATTCGCAT GCCCATTTAATGAATATATCAACGACGAGAGCAATGACTGTGCATCAACAATGTTCAGCTACATCAACCTCTATGGCAAGTATCCACCTGGTCTGTTTGCAAACGAGTGCCGAGAAGGCAAGCTA GGTCTTTCTTGCGAAGGCGTTTCCCAAAAAGATAGTGTCGTTTCAAGTGCTGGCCAGCAAGCTCAGAGCAGCTTGCTTGCTTTCATCATGCTGACCTTTGGACTAGCTGCATTGTGGTTCCATTGAGTTATTATGTCTTCCATTTATCCAAAGTTGGTGTGCTGTTGTAACCAATGAGGATTGAGTTAGTTCACCCGGCTGGGCATTTTCCTTTTGCGTGTAAAATCCTTTGTAATTTATGGCAGAGGCTACGTATTATCTGGAATCTCACTTCTCGGTTGACTACTTAGAACTCACCTTCTGTC GCTGCATTGTAACTGCTACATTATGTTGCATCAAATTCATGTCAAAAAAAAAAAAAAA] [+] EMBL AU182502 [ GCTACATCAACCTCTATGGCAAGTATCCACCTGGTCTGTTTGCAAACGAGTGCCGAGAAGGCAAGCTA GGTCTTTCTTGCGAAGGCGTTTCCCAAAAAGATAGTGTCGTTTCAAGTGCTGGCCAGCAAGCTCAGAGCAGCTTGCTTGCTTTCATCATGCTGACCTTTGGACTAGCTGCATTGTGGTTCCATTGAGTTATTATGTCTTCCATTTATCCAAAGTTGGTGTGCTGTTGTAACCAATGAGGATTGAGTTAGTTCACCCGGCTGGGCATTTTCCTTTTGCGTGTAAAATCCTTTGTAATTTATGGCAGAGGCTACGTATTATCTGGAATCTCACTTCTCGGTTGACTACTTAGAACTCACCTTCTGTCTGCTGCATTGTAACTGCTACATTATGTTGCATCAAATTCATGTCAAAAAAA ] consensusID : consensus_14975#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 623 fasta sequence [CANCACGATGGNTNTGGACCGTGGGCTCCTCCTGCTCGTCGTCTCGNCCGCCTTCCTCGTCGGGCTNGCCTCCGCGTCCCCCTTCATTTCCNANAGCGTGTTCCTGGNGAGCGTCGGATCTACCGGGGAGGANCTTGCTGCAGGCCAAGAAGAATTGCCCTGTGAATTTTGAGTTCCAAAACTACANNATANTCACANGCAAGTGCAAAGGGCCNCGGTTTCCTGCTAAACAGTTCTGCGATGCTTTCNAAGGAATTCNNATGCCCATTTAATGAATATATCNAACGACGAGAGCAATGACTGTGCATCAACAATGTTCAGCTACATCAACCTCTATGGCAANTATCCACCTGGTCTGTTTGCAAACGANTGCCGAGAAGGCAAGCTAGGTCTTTCTTGCGAAGGCGTTTCCCAAAAAGATAGTGTCGTTTCAAGTGCTGGCCAGCAAGCTCAGAGCAGCTTGCTTGCTTTCATCATGCTGACCTTTGGACTAGCTGCATTGTGGTTCCATTGAGTTATTATGTCTTCCATTTATCCAAAGTTGGTGTGCTGTTGTAACCAATGAGGATTGAGTTAGTTCACCCGGCTGGGNATTTTCCTTTTGNGNGTAAAAAAAAAAAAAA] [+] EMBL AU031006 [CANCACGATGGNTNTGGACCGTGGGCTCCTCCTGCTCGTCGTCTCGNCCGCCTTCCTCGTCGGGCTNGCCTCCGCGTCCCCCTTCATTTCCNANAGCGTGTTCCTGGNGAGCGTCGGATCTACCGGGGAGGANCTTGCTGCAGGCCAAGAAGAATTGCCCTGTGAATTTTGAGTTCCAAAACTACANNATANTCACANGCAAGTGCAAAGGGCCNCGGTTTCCTGCTAAACAGTTCTGCGATGCTTTCNAAGGAATTCNNATGCCCATTTAATGAATATATCNAACGACGAGAGCAATGACTGTGCATCAACAATGTTCAGCTACATCAACCTCTATGGCAANTATCCACCTGGTCTGTTTGCAAACGANTGCCGAGAAGGCAAGCTAGGTCTTTCTTGCGAAGGCGTTTCCCAAAAAGATAGTGTCGTTTCAAGTGCTGGCCAGCAAGCTCAGAGCAGCTTGCTTGCTTTCATCATGCTGACCTTTGGACTAGCTGCATTGTGGTTCCATTGAGTTATTATGTCTTCCATTTATCCAAAGTTGGTGTGCTGTTGTAACCAATGAGGATTGAGTTAGTTCACCCGGCTGGGNATTTTCCTTTTGNGNGTAAAAAAAAAAAAAA] consensusID : consensus_14975#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 602 fasta sequence [CAGCGTGTTCCTGGGGAGCGTCGGATCTACGGGGAGGAGCTTGCTGCAGGCCAAGAAGAATTGCCCTGTGAATTTTGAGTTCCAAAACTACAC-AATAAT-CACAAGCAAGTGCAAAGGGCCACGGTTTCCTGCTAAACAGTGCTGCGATGCTTTCAAGGAATTCGCATGCCCATTTAATGAATATATCAACGACGAGAGCAATGACTGTGCATCAACAATGTTCAGCTACATCAACCTCTATGGCAAGTATCCACCTGGTCTGTTTGCAAACGAGTGCCGAGAAGGCAAGCTAGGTCTTTCTTGCGAAGGCGTTTCCCAAAAAGATAGTGTCGTTTCAAGTGCTGGCCAGCAAGCTCAGAGCAGCTTGCTTGCTTTCATCATGCTGACCTTTGGACTAGCTGCATTGTGGTTCCATTGAGTTATTATGTCTTCCATTTATCCAAAGTTGGTGTGCTGTTGTAACCAATGAGGATTGAGTTAGTTCACCCGGCTGGGCATTTTCCTTTTGCGTGTAAAATCCTTTGTAATTTATGGCAGAGGCTACGTATTATCTGGAATCTCACTTCTCGGTTGACTACTTAGAACTCAAAAAAAAAAAAAAA] [-] EMBL CF305411 [CAGCGTGTTCCTGGGGAGCGTCGGATCTACGGGGAGGAGCTTGCTGCAGGCCAAGAAGAATTGCCCTGTGAATTTTGAGTTCCAAAACTACAC AATAAT CACAAGCAAGTGCAAAGGGCCACGGTTTCCTGCTAAACAGTGCTGCGATGCTTTCAAGGAATTCGCATGCCCATTTAATGAATATATCAACGACGAGAGCAATGACTGTGCATCAACAATGTTCAGCTACATCAACCTCTATGGCAAGTATCCACCTGGTCTGTTTGCAAACGAGTGCCGAGAAGGCAAGCTAGGTCTTTCTTGCGAAGGCGTTTCCCAAAAAGATAGTGTCGTTTCAAGTGCTGGCCAGCAAGCTCAGAGCAGCTTGCTTGCTTTCATCATGCTGACCTTTGGACTAGCTGCATTGTGGTTCCATTGAGTTATTATGTCTTCCATTTATCCAAAGTTGGTGTGCTGTTGTAACCAATGAGGATTGAGTTAGTTCACCCGGCTGGGCATTTTCCTTTTGCGTGTAAAATCCTTTGTAATTTATGGCAGAGGCTACGTATTATCTGGAATCTCACTTCTCGGTTGACTACTTAGAACTCAAAGAAAAAAAAAAA] [+] EMBL AU057997 [ TTTTGAGTTCCAAAACTNCACAAATAATCCACAAGCAAGTGCAAAGGCCCACGGTTTCCTGCTAAACAGTGCTGCGATNCTTTCAAGGAATTCGCATGCCCATTTAATGAATATATCAACGACGAGANCAATGACTGTGCATCAACAATGTTCAGCTACATCAACCTCTATGGCAAGTATCCACCTGGTCTGTTTGCAAACGAGTGCCGAGAAGGCAAGCTAGGTCTTTCTTGCGAAGGCGTTTCCCAAAAAGATAGTGTCGTTTCAAGTGCTGGCCAGCAAGCTCAGAGCAGCTTGCTTGCTTTCATCATGCTGACCTTTGGACTAGCTGCATTGTGGTTCCATTGAGTTATTATGTCTTCCATTTATCCAAAGTTGGTGTGCTGTTGTAACCAATGAGGATTGAGTTAGTTCACCCGGCTGGGCATTTTCCTTTTGCGTGTAAAATCCTTTGTAATTTATGGCAGAGGCTACGTATTATCTGGAATCTCACTTCTCGGTTGACTACTTAGAACTCAAAAA ] [-] EMBL CF291966 [ AAAGGGCCACGGTTTCCTGCTAAACAGTGCTGCGATGCTTTCAAGGAATTCGCATGCCCATTTAATGAATATATCAACGACGAGAGCAATGACTGTGCATCAACAATGTTCAGCTACATCAACCTCTATGGCAAGTATCCACCTGGTCTGTTTGCAAACGAGTGCCGAGAAGGCAAGCTAGGTCTTTCTTGCGAAGGCGTTTCCCAAAAAGATAGTGTCGTTTCAAGTGCTGGCCAGCAAGCTCAGAGCAGCTTGCTTGCTTTCATCATGCTGACCTTTGGACTAGCTGCATTGTGGTTCCATTGAGTTATTATGTCTTCCATTTATCCAAAGTTGGTGTGCTGTTGTAACCAATGAGGATTGAGTTAGTTCACCCGGCTGGGCATTTTCCTTTTGCGTGTAAAATCCTTTGTAATTTATGGCAGAGGCTACGTATTATCTGGAATCTCACTTCTCGGTTGACTACTTAGAA AAAAAAA ] consensusID : consensus_14975#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 426 fasta sequence [GAGTTCCAAAACTACCCAATAATCGCAAGCAAGTGCAAAGGGCCACGGTTTCCTGCTAAACAGTGCTGCGATGCTTTCAAGGAATTCGCATGCCCATTTAATGAATATATCAACGACGAGAGCAATGACTGTGCATCAACAATGTTCAGCTACATCAACCTCTATGGCAAGTATCCACCTGGTCTGTTTGCAAACGAGTGCCGAGAAGGCAAGCTAGGTCTTTCTTGCGAAGGCGTTTCCCAAAAAGATAGTGTCGTTTCAAGTGCTGGCCAGCAAGCTCAGAGCAGCTTGCTTGCTTTCATCATGCTGACCTTTGGACTAGCTGCATTGTGGTTCCATTGAGTTATTATGTCTTCCATTTATCCAAAGTTGGTGTGCTGTTGTAACCAATGAAAAAAAAGTTCGTTCACGGTACCTGCCCGGGCG] [-] EMBL BU572391 [GAGTTCCAAAACTACCCAATAATCGCAAGCAAGTGCAAAGGGCCACGGTTTCCTGCTAAACAGTGCTGCGATGCTTTCAAGGAATTCGCATGCCCATTTAATGAATATATCAACGACGAGAGCAATGACTGTGCATCAACAATGTTCAGCTACATCAACCTCTATGGCAAGTATCCACCTGGTCTGTTTGCAAACGAGTGCCGAGAAGGCAAGCTAGGTCTTTCTTGCGAAGGCGTTTCCCAAAAAGATAGTGTCGTTTCAAGTGCTGGCCAGCAAGCTCAGAGCAGCTTGCTTGCTTTCATCATGCTGACCTTTGGACTAGCTGCATTGTGGTTCCATTGAGTTATTATGTCTTCCATTTATCCAAAGTTGGTGTGCTGTTGTAACCAATGAAAAAAAAGTTCGTTCACGGTACCTGCCCGGGCG] consensusID : consensus_14975#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 194 fasta sequence [AGAGGACGAGACAAGGGGGTGGCTGGGCATTTTCCTTTTGCGTGTAAAATCCTTTGTAATTTATGGCAGAGGCTACGTATTATCTGGAATCTCACTTCTCGGTTGACTACTTAGAACTCACCTTCTGTCGCTGCATTGTTACTGCTACATTATGTTGCATCAAATTCATGTCATTCATGTGTAAAAAAAAAAAA] [-] EMBL CA761155 [AGAGGACGAGACAAGGGGGTGGCTGGGCATTTTCCTTTTGCGTGTAAAATCCTTTGTAATTTATGGCAGAGGCTACGTATTATCTGGAATCTCACTTCTCGGTTGACTACTTAGAACTCACCTTCTGTCGCTGCATTGTTACTGCTACATTATGTTGCATCAAATTCATGTCATTCATGTGTAAAAAAAAAAAA] [+] EMBL AA751381 [ GCGTGTAAAATCCTTTGTAATTTATGGCAGAGGCTACGTATTATCTGGAATCTCACTTCTCGGTTGACTACTTAGAACTCACCTTCTGTCGCTGCATTGTTACTGCTACATTATGTTGCATCA ] consensusID : consensus_14975#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 157 fasta sequence [TGGTTGGTGTGTCTGTTGTATACCCATGAGGATTGAGTTCGTTCACGGTACCTTAAGGGGGTGGCTGGGCATTTTCCTTTTGCGTGTAAAATCCTTTGTAATTTATGCAGAGGCTACGTATTATCTGGAATCTCACTTCTCCCCTTGACTACTTAAA] [+] EMBL BI803355 [TGGTTGGTGTGTCTGTTGTATACCCATGAGGATTGAGTTCGTTCACGGTACCTTAAGGGGGTGGCTGGGCATTTTCCTTTTGCGTGTAAAATCCTTTGTAATTTATGCAGAGGCTACGTATTATCTGGAATCTCACTTCTCCCCTTGACTACTTAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14975#1 ------------------------------------------------------------ consensus_14975#3 ------------------------------------------------------------ consensus_14975#2 ------------------------------------------------------------ consensus_14975#0 GCCTCACTAACCTCTGCTTCTTCTTAAGGTAGAGAGAGAAATAGAGAGAGAGAGAGAGAG 60 consensus_14975#5 ------------------------------------------------------------ consensus_14975#4 ------------------------------------------------------------ consensus_14975#1 ------------------------------------------------------------ consensus_14975#3 ------------------------------------------------------------ consensus_14975#2 ------------------------------------------------------------ consensus_14975#0 AGAGAGAGAGAGAGCTCAGGATCGACGAGACACCAGCGAAGACGTTGAGGCGCGCACGTG 120 consensus_14975#5 ------------------------------------------------------------ consensus_14975#4 ------------------------------------------------------------ consensus_14975#1 ------------------------------------------------------------ consensus_14975#3 ------------------------------------------------------------ consensus_14975#2 ------------------------------------------------------------ consensus_14975#0 GGCAGCCCGCGCGTCCCCTCCCCCATCGCCGCCGTGCTGCTTAGATCCGTCGAGCTCCGG 180 consensus_14975#5 ------------------------------------------------------------ consensus_14975#4 ------------------------------------------------------------ consensus_14975#1 ------------------------------------------------------------ consensus_14975#3 ------------------------------------------------------------ consensus_14975#2 ------------------------------------------------------------ consensus_14975#0 TCCCGCCGTTTCTTGCGGCGGCGAGCGAGCGAGCGAGCACAAGGAGTTCTTGCTGCGCCT 240 consensus_14975#5 ------------------------------------------------------------ consensus_14975#4 ------------------------------------------------------------ consensus_14975#1 --------------------CANCACGATGGNTNTGGACCGTGGGCTCCTCCTGCTCGTC 40 consensus_14975#3 ------------------------------------------------------------ consensus_14975#2 ------------------------------------------------------------ consensus_14975#0 GGGAGGAGGAGGAGGAGGTGCAGCACGATGGCTGTGGACCGTGGGCTCCTCCTGCTCGTC 300 consensus_14975#5 ------------------------------------------------------------ consensus_14975#4 ------------------------------------------------------------ consensus_14975#1 GTCTCGNCCGCCTTCCTCGTCGGGCTNGCCTCCGCGTCCCCCTTCATTTCCNANAGCGTG 100 consensus_14975#3 ------------------------------------------------------------ consensus_14975#2 -----------------------------------------------------CAGCGTG 7 consensus_14975#0 GTCTCGGCCGCCGTCCTCGTCGGGCTCGCCTCCGCGTCCCCCTTCATTTCCGACAGCGTG 360 consensus_14975#5 ------------------------------------------------------------ consensus_14975#4 ------------------------------------------------------------ consensus_14975#1 TTCCTGGNGAGCGTCGGATCTACCGGGGAGGANCTTGCTGCAGGCCAAGAAGAATTGCCC 160 consensus_14975#3 ------------------------------------------------------------ consensus_14975#2 TTCCTGGGGAGCGTCGGATCTAC-GGGGAGGAGCTTGCTGCAGGCCAAGAAGAATTGCCC 66 consensus_14975#0 TTCCTGGGGAGCGTCGGATCTAC-GGGGAGGAGCTTGCTGCAGGCCAAGAAGAATTGCCC 419 consensus_14975#5 ------------------------------------------------------------ consensus_14975#4 ------------------------------------------------------------ consensus_14975#1 TGTGAATTTTGAGTTCCAAAACTACANNATANTCACANGCAAGTGCAAAGGGCCNCGGTT 220 consensus_14975#3 ----------GAGTTCCAAAACTACCCAATAATCGCAAGCAAGTGCAAAGGGCCACGGTT 50 consensus_14975#2 TGTGAATTTTGAGTTCCAAAACTACACAATAATCACAAGCAAGTGCAAAGGGCCACGGTT 126 consensus_14975#0 TGTGAATTTTGAGTTCCAAAACTACACAATAATCACAAGCAAGTGCAAAGGGCCACGGTT 479 consensus_14975#5 ------------------------------------------------------------ consensus_14975#4 ------------------------------------------------------------ consensus_14975#1 TCCTGCTAAACAGTTCTGCGATGCTTTCNAAGGAATTCNNATGCCCATTTAATGAATATA 280 consensus_14975#3 TCCTGCTAAACAGTGCTGCGATGCTTTCAA-GGAATTCGCATGCCCATTTAATGAATATA 109 consensus_14975#2 TCCTGCTAAACAGTGCTGCGATGCTTTCAA-GGAATTCGCATGCCCATTTAATGAATATA 185 consensus_14975#0 TCCTGCTAAACAGTGCTGCGATGCTTTCAA-GGAATTCGCATGCCCATTTAATGAATATA 538 consensus_14975#5 --------------------------------TGGTTGGTGTGTCTGTTGTATACCCATG 28 consensus_14975#4 ------------------------------------------------------------ consensus_14975#1 TCNAACGACGAGAGCAATGACTGTGCATCAACAATGTTCAGCTACATCAACCTCTATGGC 340 consensus_14975#3 TCAA-CGACGAGAGCAATGACTGTGCATCAACAATGTTCAGCTACATCAACCTCTATGGC 168 consensus_14975#2 TCAA-CGACGAGAGCAATGACTGTGCATCAACAATGTTCAGCTACATCAACCTCTATGGC 244 consensus_14975#0 TCAA-CGACGAGAGCAATGACTGTGCATCAACAATGTTCAGCTACATCAACCTCTATGGC 597 consensus_14975#5 AGGA---TTGAGTTCGTTCACGGTACCTTAAGGGGGTGGCTGGGCATTTTCCTTTTGCGT 85 consensus_14975#4 ------------------------------------------------------------ consensus_14975#1 AANTATCCACCTGGTCTGTTTGCAAACGA-NTGCCGAGAAGGCAAGCTAGGTCTTTCTTG 399 consensus_14975#3 AAGTATCCACCTGGTCTGTTTGCAAACGA-GTGCCGAGAAGGCAAGCTAGGTCTTTCTTG 227 consensus_14975#2 AAGTATCCACCTGGTCTGTTTGCAAACGA-GTGCCGAGAAGGCAAGCTAGGTCTTTCTTG 303 consensus_14975#0 AAGTATCCACCTGGTCTGTTTGCAAACGA-GTGCCGAGAAGGCAAGCTAGGTCTTTCTTG 656 consensus_14975#5 GTAAAATCCTTTGTAATTTATGCAGAGGCTACGTATTATCTGGAATCTCACTTCTCCCCT 145 consensus_14975#4 --------------------AGAGGACGAGACAAGGGGGTGGCTGGGCATTTTCCTTTTG 40 * * * * * consensus_14975#1 CGAAGGCGTTTCCCAAAAAGATAGTGTCGTTTCAAGTGCTGGCCAGCAAGCTCAGAGCAG 459 consensus_14975#3 CGAAGGCGTTTCCCAAAAAGATAGTGTCGTTTCAAGTGCTGGCCAGCAAGCTCAGAGCAG 287 consensus_14975#2 CGAAGGCGTTTCCCAAAAAGATAGTGTCGTTTCAAGTGCTGGCCAGCAAGCTCAGAGCAG 363 consensus_14975#0 CGAAGGCGTTTCCCAAAAAGATAGTGTCGTTTCAAGTGCTGGCCAGCAAGCTCAGAGCAG 716 consensus_14975#5 TGA-----CTACTTAAA------------------------------------------- 157 consensus_14975#4 CGTGTAAAATCCTTTGTAATTTATGGCAGAGGCTACGTATTATCTGGAATCTCA---CTT 97 * * * consensus_14975#1 CTTGCTTGCTTTCATCATGCTGACCTTTGGACTAGCTGCATTGTGGTTCCATTGAGTTAT 519 consensus_14975#3 CTTGCTTGCTTTCATCATGCTGACCTTTGGACTAGCTGCATTGTGGTTCCATTGAGTTAT 347 consensus_14975#2 CTTGCTTGCTTTCATCATGCTGACCTTTGGACTAGCTGCATTGTGGTTCCATTGAGTTAT 423 consensus_14975#0 CTTGCTTGCTTTCATCATGCTGACCTTTGGACTAGCTGCATTGTGGTTCCATTGAGTTAT 776 consensus_14975#5 ------------------------------------------------------------ consensus_14975#4 CTCGGTTGACTACTTAGAACTCACCTTCTGTC--GCTGCATTGT--TACTGCTACATTAT 153 consensus_14975#1 TATGTCTTCCATTTATCCAAAGTTGGTGTGCTGTTGTAACCAATGAGGATTGAGTTAGTT 579 consensus_14975#3 TATGTCTTCCATTTATCCAAAGTTGGTGTGCTGTTGTAACCAATGAAAAAAAAGTTCGTT 407 consensus_14975#2 TATGTCTTCCATTTATCCAAAGTTGGTGTGCTGTTGTAACCAATGAGGATTGAGTTAGTT 483 consensus_14975#0 TATGTCTTCCATTTATCCAAAGTTGGTGTGCTGTTGTAACCAATGAGGATTGAGTTAGTT 836 consensus_14975#5 ------------------------------------------------------------ consensus_14975#4 GTTGCATCAAATTCATGTCA--TTCATGTGTAAAAAAAAAAAA----------------- 194 consensus_14975#1 CACCCGGCTGGGNATTTTCCTTTTGNGNGTAAAAAAAAAAAAAA---------------- 623 consensus_14975#3 CAC-------GGTACCTGCCC---GGGCG------------------------------- 426 consensus_14975#2 CACCCGGCTGGGCATTTTCCTTTTGCGTGTAAAATCCTTTGTAATTTATGGCAGAGGCTA 543 consensus_14975#0 CACCCGGCTGGGCATTTTCCTTTTGCGTGTAAAATCCTTTGTAATTTATGGCAGAGGCTA 896 consensus_14975#5 ------------------------------------------------------------ consensus_14975#4 ------------------------------------------------------------ consensus_14975#1 ------------------------------------------------------------ consensus_14975#3 ------------------------------------------------------------ consensus_14975#2 CGTATTATCTGGAATCTCACTTCTCGGTTGACTACTTAGAACTCAAAAAAAAAAAAAAA- 602 consensus_14975#0 CGTATTATCTGGAATCTCACTTCTCGGTTGACTACTTAGAACTCACCTTCTGTCGCTGCA 956 consensus_14975#5 ------------------------------------------------------------ consensus_14975#4 ------------------------------------------------------------ consensus_14975#1 ---------------------------------------------------- consensus_14975#3 ---------------------------------------------------- consensus_14975#2 ---------------------------------------------------- consensus_14975#0 TTGTAACTGCTACATTATGTTGCATCAAATTCATGTCAAAAAAAAAAAAAAA 1008 consensus_14975#5 ---------------------------------------------------- consensus_14975#4 ---------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||