These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14979#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 969 fasta sequence [GAATATCTTCATGAGAAGGTCCAACCTTCTATAGTCCATCGGGACATACGCTCTAGCAATGTTCTTCTATTTGAGGACTACAAAGCAAAAATTGCAGATTTCAATCCTTCAAATCAGTCTCCTGATATGGCTGCTCGTTTGCACTCAACTCGTGTCCTTGGAACCTTCGGCTATCATGCTCCCGAGTATGCCATGACTGGCCAGTTGACTCAGAAAAGTGATGTATATAGTTTTGGAGTTGTTCTTCTAGAGCTTCTAACAGGAAGGAAACCAGTAGATCACACAATGCCTAGGGGTCAGCAGAGTC-TGGTTACATGGGCAACACCTCGTTTGACAGAGGACACTGTGAAACAATGGCGTTGACCCGAGACTGAAGGGCGAGTATCCCCCAAAAGGGGTTGCCAAGCTCGCAGCGG-TGGGCGGCACTCTGTGTGCAATACGAGTCTGAGTTTAGACCAAGCATGAGCATTGTGGTCAAGGCACTCTCCCCTCTTCTCCAGCATAAACCGCCACCGCCACCAGCCGTTGCTCCTGAGACCTGAGCTCCAGATTCAACTGCTTCTTATGCTTTTACTTCCGAGTTTCAACATGGA-TGTAAAGAGGGATGGAATTTCTTCATCGGTCCCTGTCGTTACTGTTTCATGCTTGCCCATTGGTTACCATGCCGTTTAAGTACTGGTCCTGTGAGCTTTACAATAGATTTTTGGTGTTTACACTCGGAGCTTTCCTTGTCATTCCTTTCATGTGTGCTTATGCTGAGTGCTGTGCTGCCTTCGTTGGTCGGCAAAGTTGTGTTTTTAGCTGCCCAGCGGTGGTGATCACCGAATAATCTTGTTCTGAGTTGAACTGTGACATGGGAAGGTTCTAAATCTAACTGTTCATGGCTTGACATGCTTTTGGTGTGTGCCTACGTGAGAGGATGATGGTTCTTCACTTTGTTAACATGTGAGTTATGAATGGATGCTTTTG] [+] EMBL AU162536 [GAATATCTTCATGAGAAGGTCCAACCTTCTATAGTCCATCGGGACATACGCTCTAGCAATGTTCTTCTATTTGAGGACTACAAAGCAAAAATTGCAGATTTCAATCCTTCAAATCAGTCTCCTGATATGGCTGCTCGTTTGCACTCAACTCGTGTCCTTGGAACCTTCGGCTATCATGCTCCCGAGTATGCCATGACTGGCCAGTTGACTCAGAAAAGTGATGTATATAGTTTTGGAGTTGTTCTTCTAGAGCTTCTAACAGGAAGGAAACCAGTAGATCACACAATGCCTAGGGGTCAGCAGAGTC TGGTTACATGGGCAACACCTCGTTTGACAGAGGACACTGTGAAACAATGGCGTTGACCCGAGACTGAAGGGCGAGTATCCCCCAAAAGGGGTTGCCAAGCTCGCAGCGG TGGGCGGCACTCTGTGTGCAATACGAGTCTG ] [+] EMBL AU065436 [GAATATCTTCATGAGAAGGTCCAACCTTCTATAGTCCATCGGGACATACGCTCTAGCAATGTTCTTCTATTTGAGGACTACAAAGCAAAAATTGCAGATTTCAATCCTTCAAATCAGTCTCCTGATATGGCTGCTCGTTTGCACTCAACTCGTGTCCTTGGAACCTTCGGCTATCATGCTCCCGAGTATGCCATGACTGGCCAGTTGACTCAGAAAAGTGATGTATATAGTTTTGGAGTTGTTCTTCTAGAGCTTCTAACAGGAAGGAAACCAGTAGATCACACAATGCCTAGGGGTCAGCAGAGTCTTGGTTACATGGGCAACACCTCGTTTG CAGGGGNCACTGTG AACAATGCGGTTGGCCCGGGACT NAGGGCGGGTATCCCC AAAGGGGTT CC AG TTG AACGGTTGGGNGG AATTTGTTTGCNATACGgg ] [-] EMBL BU673193 [ AGGGCGAGTATCCCCCCAAAGGGGTTGCCAAGCTCGCACCGG T GGCGGCACTCTGTGTGCAATACGAGTCTGAGTTTAGACCAAGCATGAGCATTGTGGTCAAGGCACTCTCCCCTCTTCTCCAGCATAAACCGCCACCGCCACCAGCCGTTGCTCCTGAGACCTGAGCTCCAGATTCAACTGCTTCTTATGCTTTTACTTCCGAGTTTCAACATGGA TGTAAAGAGGGATGGAATTTCTTCATCGGTCCCTGTCGTTACTGTTTCATGCTTGCCCATTGGTTACCATGCCGTTTAAGTACTGGTCCTGTGAGCTTTACAATAGATTTTTGGTGTTTACACTCGGAGCTTTCCTTGTCATTCCTTTCATGTGTGCTTATGCTGAGTGCTGTGCTGCCTTCGTTGGTCGGCAAAGTTGTGTTTTTAGCTGCCCAGCGGTGGTGATCACCGAATAATCTTGTTCTGAGTTGAACTGTGACATGGGAAGGTTCTAAATCTAACTGTTCA ] [+] EMBL CA767435 [ CCCCAAAAGGGGTTGCCAAGCTCGCAGCGG T GGCGGCACTCTGTGTGCAATACGAGTCTGAGTTTAGACCAAACATGAGCATTGTGGTCAAGGCACTCTCCCCTCTTCTCCAGCATAAACCGCCACTGCCACCAGCCGTTGCTCCTGAGACCTGAGCTCCAGATTCAACTGCTTCTTATGCTTTTACTTCCGAGTTTCAACATGGA TGTAAAGAGGGATGGAATTTCTTCATCGGTCCCTGTCGTTACTGTTTCATGCTTGCCAATTGGTTACCATGCCGTTTAAGTACTGGTCCTGTGAGCTTTACAATAGATTTTTGGTGTTTACACTCGGAGCTTTCCTTGTCATTCCTTTCATGTGTGCTTATGCTGAGTGCTGTGCTGCCTTCGTTGGTCGGCAAAGTTGTGTTTTTAGCTGCCCAGCGGTGGTGATCACCGAATAATCTTGTTCTGAGTTGAACTGTGACATGGGAAGGTTCTAAATCTAACTGTTCATGGCTTGACATGCTTTTGGTGTGTGCCTACGTGAGAGGATGATGGTTCTTCACTTTGTTAACATGTGAGTTATGAATGGATGCTTTTG] [+] EMBL BI796084 [ TCCGAGTTTCAACATGGAGTGTAAAGAGGGATGGAATTTCTTCATCGGTCCCTGTCGTTACTGTTTCATGCTT CCCATTGGTTACCATGCCGTTTAAGTACTGTTCCTGTGAGCTTTACAATAGATTTTTGGTGTTTACACTCGGAGCTTTCCTTGTCATTCCTTTCATGTGTGCTTATGCTGAGTGCTGTGCTGCCTTCGTTGGTC GCAAA TTGTGTTTTTAGCTGCCCAGCGGTGGTGATCACCGAATAATCTTGTTCTGAGTTGAACTGTGACATGGGAAGGTTCTAAATCTAACTGTTCATG ] consensusID : consensus_14979#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 724 fasta sequence [TTCAAAGGCTTTAGTTGGTGAAGGATCATATGGAAGAGTGTATTATGCTACTCTAGACAACGGAAAGCAAGTTGCTGTTAAAAAGCTTGATGCTTCAACAGAACCTGAGGTTGATAATGATTTTTTGACACAGGTGTCCATTGTGTCAAGATTAAGACATGAAAATTTTGTGGAAATGCTTGGTTACTGTGTGGAAGGAAATCAGCGCCTAGTGGCCTACGAATTTGCTACGATGGGTTCTCTGCATGATATTTTGCATGGAAGAAAGGGTGTCCCTGGTGCACAACCTGGCCCAGCACTTGACTGGATGCAGCGAGTGAGAATTGCTATTGATGCTGCTAAAGGGCTAGAATATCTTCATGAGAAGGTCCAACCTTCTATAGTCCATCGGGACATACGCTCTAGCAATGTTCTTCTATTTGAGGACTACAAAGCAAAAATTGCAGATTTCAATCCTTCAAATCAGTCTCCTGATATGGCTGCTCGTTTGCACTCAACTCGTGTCCTTGGAACCTTCGGCTATCATGCTCCC-AGTATGCCATGACTGGGGCCGGTTGACTCAAAAAAAGCGCCGGCTATAGTTTTGG--AG-TGGTCTTCTA-AGCCTCTTACCGGGAAGG-AACCCGTAGATCCACATGCCTTGGGCACCAAGCTGGTCATGGGCACACCTCGTTGCAAGACCTGGGAACAATGCGTGGCCGATCTGAAGGCAGTTCCCCAAAAGGGT] [+] EMBL OSR22781A [TTCAAAGGCTTTAGTTGGTGAAGGATCATATGGAAGAGTGTATTATGCTACTCTAGACAACGGAAAGCAAGTTGCTGTTAAAAAGCTTGATGCTTCAACAGAACCTGAGGTTGATAATGATTTTTTGACACAGGTGTCCATTGTGTCAAGATTAAGACATGAAAATTTTGTGGAAATGCTTGGTTACTGTGTGGAAGGAAATCAGCGCCTAGTGGCCTACGAATTTGCTACGATGGGTTCTCTGCATGATATTTTGCATGGAAGAAAGGGTGTCCCTGGTGCACAACCTGGCCCAGCACTTGACct ] [+] EMBL BU572332 [ GGTGAAGGATCATATGGAAGAGTGTATTATGCTACTCTAGACAACGGAAAGCAAGTTGCTGTTAAAAAGCTTGATGCTTCAACAGAACCTGAGGTTGATAATGATTTTTTGACACAGGTGTCCATTGTGTCAAGATTAAGACATGAAAATTTTGTGGAAATGCTTGGTTACTGTGTGGAAGGAAATCAGCGCCTAGTGGCCTACGAATTTGCTACGATGGGTTCTTTGCATGATATTTTGCATGGAAGAAAGGGTGT CCTGGTGCACAACCT GCCCAGCACTTGACTGGATGCAGCGAGTGAGAATTGCTATTGATGCTGCTAAA GGCTAGAATATCTTCATGAGAAGG CC ACCTTCTATAGTCCATCGGG CATACGCTCTAGCAATGTTCTTCTATTTGAGGACT CAAAGCCAAAATTGCAGATTTCAATCC TCAAATAAGACTCCTGATATGGCTGCTCGTTTGCACTCAACTCGTGTCCTTGGAACCTTCGGCTATCATGCTCCC AGTATGCCATGACTGGGGCCGGTTGACTCAAAAAAAGCGCCGGCTATAGTTTTGG AG TGGTCTTCTA AGCCTCTTACCGGGAAGG AACCCGTAGATCCACATGCCTTGGGCACCAAGCTGGTCATGGGCACACCTCGTTGCAAGACCTGGGAACAATGCGTGGCCGATCTGAAGGCAGTTCCCCAAAAGGGT] [+] EMBL CF314910 [ TGATTTTTTGACACAGGTGTCCATTGTGTCAAGATTAAGACATGAAAATTTTGTGGAAATGCTTGGTTACTGTGTGGAAGGAAATCAGCGCCTAGTGGCCTACGAATTTGCTACGATGGGTTCTCTGCATGATATTTTGCATGGAAGAAAGGGTGTCCCTGGTGCACAACCTGGCCCAGCACTTGACTGGATGCAGCGAGTGAGAATTGCTATTGATGCTGCTAAAGGGCTAGAATATCTTCATGAGAAGGTCCAACCTTCTATAGTCCATCGGGACATACGCTCTAGCAATGTTCTTCTATTTGAGGACTACAAAGCAAAAATTGCAGATTTCAATCCTTCAAATCAGTCTCCTGATATGGCTGCTCGTTTGCACTCAACTCGTGTCCTTGGAACCTTCGGCTATCATGCTCCCGAGTATGCCATGACT GGCCAGTTGACTC AGAAAAGTGATGTATATAGTTTGGGAAAGTTGTTCTTCTAGAGCTTC TAACAGGAAGGAAACCAGTA ] [+] EMBL BU673930 [ CCAGCACTTGACTGGATGCAGCGAGTGAGAATTGCTATTGATGCTGCTAAAGGGCTAGAATATCTTCATGAGAAGGTCCAACCTTCTATAGTCCATCGGGACATACGCTCTAGCAATGTTCTTCTATTTGAGGACTACAAAGCAAAAATTGCAGATTTCAATCCTTCAAATCAGTCTCCTGATATGGCTGCTCGTTTGCACTCAACTCGTGTCCTTGGAACCTTCGGCTATCA ] consensusID : consensus_14979#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 504 fasta sequence [GCTCGCCAGCCGTTGGCGGCACTCCTGTGTGCAAATACGAGTCTGGAGTTTAG-CCCAA--GCATG-AGCATTGTGGTC-AAGGC-NC-TCTCCCCTCTTCTCCAGCATAAAC-CGCCACCGCCACCAGCCGTTGCT-CCTGAGACCTGAGCTCCAGATT-CAACTGCTTCTTATGCTTTTACTTCCGAGTTTCAACATGGATGTAAAGAGGGATGGAATTTCTTCATCGGTCCCTGTCGTTACTGTTTCATGCTTGCCAATTGGTTACCATGCCGTTTAAGTACTGGTCCTGTGAGCTTTACAATAGATTTTTGGTGTTTACACTCGGAGCTTTCCTTGTCATTCCTTTCATGTGTGCTTATGCTGAGTGCTGTGCTGCCTTCGTTGGTCGGCAAAGTTGTGTTTTTAGCTGCCCAG-CGGTGGTGATCACC-GAATAATCTTGTTCT-GAGTTGAACTGT-GACATGGGAAGGTTCT-AAATCTAA-CTGTTCATGGCTTGACAAAAAAAAAAAAAAA] [+] EMBL AU032291 [GCTCGCCAGCCGTTGGCGGCACTCCTGTGTGCAAATACGAGTCTGGAGTTTAGACCCAA GCATG AGCATTGTGGTCAAAGGCACC TCTCCCCTCTTCTCCAGCATAAAC CGNCACCGCCACCAGCCGTAGCTCCCTGAGACCTGAGCTCCAGATTCCAACTGCTTCTTATGCTTTTACTTCCGAGTTTCAACATGGATGTAAAGAGGGATGGAATTNCTTCATCGGTCCCTGTCGTTACTGTTTCATGCTTGCCAATTGGTTACCATGCCGTTTAAGTACTGGTCCTGTGAGCTTTACAATAGATTTTTGGTGTTTACACTCGGAGCTTTCCTTGTCATTCCTTTCATGTGTGCTTATGCTGAGTGCTGTGCTGCCTTCGTTGGTCGGCAAAGTTGTGTTTTTAGCTGCCCAG CGGTGGTGATCACC GAATAATCTTGTTCT GAGTTGAACTGT GACATGGGAAGGTTCT AAATCTAA CTGTTCATGGCTTGACAAAAAAAAAAAAAAA] [+] EMBL AT003638 [ tnAGTTTAG CCCAA GCATG AGCATTGTGGTC AAGGC NC TTTTCCCTCTTCTCCAGCATAAAC CGCCACCGCCACCAGCCGTTGCT CCTGAGACCTGAGCTCCAGATT CAACTGCTTCTTATGCTTTTACTTCCGAGTTTCAACATGGATGTAAAGAGGGATGGAATTTCTTCATCGGTCCCTGTCGTTACTGTTTCATGCTTGCCAATTGGTTACCATGCCGTTTAAGTACTGGTCCTGTGAGCTTTACAATAGATTTTTGGTGTTTACACTCGGAGCTTTCCTTGTCATTCCTTTCATGTGTGCTTATGCTGAGTGCTGTGCTGCCTTCGTTGGTCGGCAAAGTTGTGTTTTTAGCTGCCCAG CGGTGGTGATCACC GAATAATCTTGTTCT GAGTTGAACTGT GCCATGGGAAGGTTCT AAATCTAA CTGTTCATGGCTTGACATGCAAAAAAAAAAA] [+] EMBL AT003753 [ TTTAG ACCAAAGGCATGAAGCAATGTGGTC AAGGC GCTTCTCCCCTCNTNTCCAGCATAAACNGGCCACCACCNCCAGCCGTTGNT CCTGAG CCTGAGCTCCANATT CAACTGCTTNTTATGCNTTTACTTCCGAGTTTCAACATGGATGTAAAGAGGAATGGAATTTCTTCATCGGTCCCTGTCGTTACTGTTTCATGCTTGCCAATTGGTTACCATGCCGTTTAAGTACTGGTCCTGTGAGCTTTACAATAGATTTTTGGTGTTTACACTCGGAGCTTTCCTTGTCATTCCTTTCATGTGTGCTTATGCTGAGTGCTGTGCTGCCTTCGTTGGTCGGCAAANTTGTGTTTTTAGCTGCCCAG CGGTGGTGATCACC GAATAATCTTGTTCT GAGTTGAACTGT GACATGGGAAGGTTCT AAATCTAA CTGTTCATGGCTTGACATGCAAAAAAAAAAA] [+] EMBL AU167014 [ aC TCTCCCCTCTTNTCCAGCATAAAC CGCCACCGCCACCAGCCGTTGCT CCTGAGACCTGAGCTCCAGATT CAACTGCTTNTTATGCTTTTACTTCCGAGTTTCAACATGGATGTAAAGAGGGATGGAATTTNTTCATCGGTCCCTGTCGTTACTGTTTCATGCTTGCCAATTGGTTACCATGCCGTTTAAGTACTGGTCCTGTGAGCTTTACAATAGATTTTTGGTGTTTACACTCGGAGCTTTCCTTGTCATTCCTTTCATGTGTGCTTATGCTGAGTGCTGTGCTGCCTTCGTTGGTCGGCAAAGTTGTGTTTTTAGCTGCCCAG CGGTGGTGATCACC GAATAATCTTGTTNT GAGTTGAACTGT GACATGGGAAGGTTNT AAATNTAA CTGTTCATGGCTTGGCAAAAAAAAAAAAAAA] [-] EMBL CB967293 [ gcCAAAGTTGTGTTTTTAGCTGCCCAGCCGGTGGTGATCACCNGAATAATCTTGTTCTGGAGTTGAACTGTNGACATGGGAAGGTTCTGAAATCTAANCTGTTCATG ] consensusID : consensus_14979#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 433 fasta sequence [CATTGTGGTCAAGGCACTTTCCCCTTTTTTCCAGCATAAACCGCCACCGCCACCAGCCGTTGTTCCTGAGACCTGAGCTCCAGATTCAACTGCTTCTTATGCTTTTACTTCCGAGTTTCAACATGGATGTAAAGAGGGATGGAATTTTTTCATCGGTCCCTGTCGTTACTGTTTCATGCTTGCCAATTGGTTACCATGCCGTTTAAGTACTGGTCCTGTGAGCTTTACAATAGATTTTTGGTGTTTACACTCGGAGCTTTCCTTGTCATTCCTTTCATGTGGGCTTATGCTGAGTGCTGTGCTGCCTTCGTTGGTCGGCAAAGTTGTGTTTTTAGCTGCCCAGCGGTGGTGATCCCCGAATAATCTTGTTTTGAGTTGAACTGTGACATGGGAAGGTTTTAAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF314911 [CATTGTGGTCAAGGCACTTTCCCCTTTTTTCCAGCATAAACCGCCACCGCCACCAGCCGTTGTTCCTGAGACCTGAGCTCCAGATTCAACTGCTTCTTATGCTTTTACTTCCGAGTTTCAACATGGATGTAAAGAGGGATGGAATTTTTTCATCGGTCCCTGTCGTTACTGTTTCATGCTTGCCAATTGGTTACCATGCCGTTTAAGTACTGGTCCTGTGAGCTTTACAATAGATTTTTGGTGTTTACACTCGGAGCTTTCCTTGTCATTCCTTTCATGTGGGCTTATGCTGAGTGCTGTGCTGCCTTCGTTGGTCGGCAAAGTTGTGTTTTTAGCTGCCCAGCGGTGGTGATCCCCGAATAATCTTGTTTTGAGTTGAACTGTGACATGGGAAGGTTTTAAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_14979#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 409 fasta sequence [TANAAAATAANCCNCCCCCCCCCCCNCCCGNTGNTCTTNANCCCTGNGCTCCANATNCACCNGNTTCTTAGGCTTTTNCTTCCGNGTTTCACCNGGGNNGTAAANAGGAATGGAATTTTTTCANCGGGTCCCTGTCGTTACTGTTTCATGCTTGCCAATTGGTTACCATGCCGTTTAAGTACTGGTCCTGTGAGCTTTACAATAGATTTTTGGTGTTTACACTCGGAGCTTTCCTTGTCATTCCTTTCATGTGTGCTTATGCTGAGTGCTGTGCTGCCTTCGTTGGTCGGCAAAGTTGTGTTTTTAGCTGCCCANCGGTGGTGATCNCCGAATANTCNTGTTNTGAGTTGAACTGCCNCATCNCGAAGGTTCTAAATCTAACTGTTCATGGCTTGACATGCAAAAAAAA] [+] EMBL AT003715 [TANAAAATAANCCNCCCCCCCCCCCNCCCGNTGNTCTTNANCCCTGNGCTCCANATNCACCNGNTTCTTAGGCTTTTNCTTCCGNGTTTCACCNGGGNNGTAAANAGGAATGGAATTTTTTCANCGGGTCCCTGTCGTTACTGTTTCATGCTTGCCAATTGGTTACCATGCCGTTTAAGTACTGGTCCTGTGAGCTTTACAATAGATTTTTGGTGTTTACACTCGGAGCTTTCCTTGTCATTCCTTTCATGTGTGCTTATGCTGAGTGCTGTGCTGCCTTCGTTGGTCGGCAAAGTTGTGTTTTTAGCTGCCCANCGGTGGTGATCNCCGAATANTCNTGTTNTGAGTTGAACTGCCNCATCNCGAAGGTTCTAAATCTAACTGTTCATGGCTTGACATGCAAAAAAAA] consensusID : consensus_14979#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 404 fasta sequence [TTTTGCTCCCAAAAGTGATGATCCCACAAAAGCACCTCCTCCCATTGAAGTACCAGAATTATCATTTGATGAACTGAAAGAGAAGACTGATAATTTTGGTTCAAAGGCTTTAGTTGGTGAAGGATCATATGGAAAAGTGTATTATGCTACTCTAGACAACGGAAAGCAAGTTGCTGTTAAAAAGCTTGATGCTTCAACAGAACCTGAGGTTGATAATGATTTTTTGACACAGGTGTCCATTGTTGTCAAGATAAAGACATTGAAAATTTTTGTGTGAAATGCTTGCGTTACTAGTGTTGGAAGAGAAATCAAACGCCCTAATGTGCCTAACGAATAATGTCTAACGAATAGGGTTACTATTGACATAGATAATATTAGGCATTGGAATAGAATCAGGGGTTGTT] [+] EMBL CA752972 [TTTTGCTCCCAAAAGTGATGATCCCACAAAAGCACCTCCTCCCATTGAAGTACCAGAATTATCATTTGATGAACTGAAAGAGAAGACTGATAATTTTGGTTCAAAGGCTTTAGTTGGTGAAGGATCATATGGAAAAGTGTATTATGCTACTCTAGACAACGGAAAGCAAGTTGCTGTTAAAAAGCTTGATGCTTCAACAGAACCTGAGGTTGATAATGATTTTTTGACACAGGTGTCCATTGTTGTCAAGATAAAGACATTGAAAATTTTTGTGTGAAATGCTTGCGTTACTAGTGTTGGAAGAGAAATCAAACGCCCTAATGTGCCTAACGAATAATGTCTAACGAATAGGGTTACTATTGACATAGATAATATTAGGCATTGGAATAGAATCAGGGGTTGTT] consensusID : consensus_14979#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 342 fasta sequence [CTCTCAACCTGGCCACACTTGCTGGATGCAGACGAGTGAGAATTGCTATTGATGCTGCTAAAGGCTAGAAAATCTTCATAAGAAGGGCAACCTTCTATAGTCCATCGGGACATACACTCTAACAATGTCTTCTATTGNGACTCCAAACCAAAATTGCAGATTTCAATCCTCAAATAAGCTTCATATATGGCTGGTCGCTTGACTCACTCATGTCCTTGGAACCCTCGTTGTTATGCACCCGAGATTGCCATGATTGGCCAGTTGGCTCAAAAAAAGAGTTGATATATAGTTTTGGAGTTGGTCCCCCCCCCCCCTTAACCGGGGGGAACCCGCAATACCCCT] [+] EMBL BU572333 [CTCTCAACCTGGCCACACTTGCTGGATGCAGACGAGTGAGAATTGCTATTGATGCTGCTAAAGGCTAGAAAATCTTCATAAGAAGGGCAACCTTCTATAGTCCATCGGGACATACACTCTAACAATGTCTTCTATTGNGACTCCAAACCAAAATTGCAGATTTCAATCCTCAAATAAGCTTCATATATGGCTGGTCGCTTGACTCACTCATGTCCTTGGAACCCTCGTTGTTATGCACCCGAGATTGCCATGATTGGCCAGTTGGCTCAAAAAAAGAGTTGATATATAGTTTTGGAGTTGGTCCCCCCCCCCCCTTAACCGGGGGGAACCCGCAATACCCCT] consensusID : consensus_14979#7 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 316 fasta sequence [GCAGCCGGTGGCGGCACTCTGTGTGCAATACGAGTCTGAGTTTAGACCAAGCATGAGCATTGTGGTCAAGGCACTCTCCCCTCTTCTCCAGCATAAACCGCCACCGCCACCAGCCGTTGCTCCTGAGACCTGAGCTCCAGATTCAACTGCTTCTTATGCTTTTACTTCCGAGTTTCAACATGGATGTAAAGAGGGATGGAATTTCTTCATCGGTCCCTGTCGTTACTGTTTCATGCTTGCCAATTGGTTACCATGCCGTTTAAGTACTGGTCCTGTGAGCTTTACAATAGATTTTTGGTGTTTAAAAAAAAAAAAA] [+] EMBL C22590 [GCAGCCGGTGGCGGCACTCTGTGTGCAATACGAGTCTGAGTTTAGACCAAGCATGAGCATTGTGGTCAAGGCACTCTCCCCTCTTCTCCAGCATAAACCGCCACCGCCACCAGCCGTTGCTCCTGAGACCTGAGCTCCAGATTCAACTGCTTCTTATGCTTTTACTTCCGAGTTTCAACATGGATGTAAAGAGGGATGGAATTTCTTCATCGGTCCCTGTCGTTACTGTTTCATGCTTGCCAATTGGTTACCATGCCGTTTAAGTACTGGTCCTGTGAGCTTTACAATAGATTTTTGGTGTTTAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14979#2 ------------------------------------------------------------ consensus_14979#7 ------------------------------------------------------------ consensus_14979#3 ------------------------------------------------------------ consensus_14979#0 GAATATCTTCATGAGAAGGTCCAACCTTCTATAGTCCATCGGGACATACGCTCTAGCAAT 60 consensus_14979#4 ------------------------------------------------------------ consensus_14979#1 ------------------------------------------------------------ consensus_14979#6 ------------------------------------------------------------ consensus_14979#5 ------------------------------------------------------------ consensus_14979#2 ------------------------------------------------------------ consensus_14979#7 ------------------------------------------------------------ consensus_14979#3 ------------------------------------------------------------ consensus_14979#0 GTTCTTCTATTTGAGGACTACAAAGCAAAAATTGCAGATTTCAATCCTTCAAATCAGTCT 120 consensus_14979#4 ------------------------------------------------------------ consensus_14979#1 ------------------------------------------------------------ consensus_14979#6 ------------------------------------------------------------ consensus_14979#5 ------------------------------------------------------------ consensus_14979#2 ------------------------------------------------------------ consensus_14979#7 ------------------------------------------------------------ consensus_14979#3 ------------------------------------------------------------ consensus_14979#0 CCTGATATGGCTGCTCGTTTGCACTCAACTCGTGTCCTTGGAACCTTCGGCTATCATGCT 180 consensus_14979#4 ------------------------------------------------------------ consensus_14979#1 ------------------------------------------------------------ consensus_14979#6 ------------------------------------------------------------ consensus_14979#5 ------------------------------------------------------------ consensus_14979#2 ------------------------------------------------------------ consensus_14979#7 ------------------------------------------------------------ consensus_14979#3 ------------------------------------------------------------ consensus_14979#0 CCCGAGTATGCCATGACTGGCCAGTTGACTCAGAAAAGTGATGTATATAGTTTTGGAGTT 240 consensus_14979#4 ------------------------------------------------------------ consensus_14979#1 ---------------------------------------------------------TTC 3 consensus_14979#6 ------------------------------------------------------------ consensus_14979#5 ------------------------------------------------------------ consensus_14979#2 ------------------------------------------------------------ consensus_14979#7 ------------------------------------------------------------ consensus_14979#3 ------------------------------------------------------------ consensus_14979#0 GTTCTTCTAGAGCTTCTAACAGGAAGGAAACCAGTAGATCACACAATGCCTAGGGGTCAG 300 consensus_14979#4 ------------------------------------------------------------ consensus_14979#1 AAAGGCTTTAGTTGGTGAAGGATCATATGGAAGAGTGTATTATGCTACTCTAGACAACGG 63 consensus_14979#6 ------------------------------------------------------------ consensus_14979#5 ------------------------------------------------------------ consensus_14979#2 ------------------------------------------------------------ consensus_14979#7 ------------------------------------------------------------ consensus_14979#3 ------------------------------------------------------------ consensus_14979#0 CAGAGTCTGGTTACATGGGCAACACCTCGTTTGACAGAGGACACTGTGAAACAATGGCGT 360 consensus_14979#4 ------------------------------------------------------------ consensus_14979#1 AAAGCAAGTTGCTGTTAAAAAGCTTGATGCTTCAACAGAACCTGAGGTTGATAATGATTT 123 consensus_14979#6 ------------------------------------------------------------ consensus_14979#5 ------------------------------------------------------------ consensus_14979#2 --------------------------------------------GCTCGCCAGCCGTTGG 16 consensus_14979#7 -------------------------------------------------GCAGCCGGTGG 11 consensus_14979#3 ------------------------------------------------------------ consensus_14979#0 TGACCCGAGACTGAAGGGCGAGTATCCCCCAAAAGGGGTTGCCAAGCTCGCAGCGGTGGG 420 consensus_14979#4 ------------------------------------------------------------ consensus_14979#1 TTTGACACAGGTGTCCATTGTGTCAAGATTAAGACATGAAAATTTTGTGGAAATGCTTGG 183 consensus_14979#6 ------------------------------------------------------------ consensus_14979#5 ------------------------------------------------------------ consensus_14979#2 CGGCACTCCTGTGTGCAAATACGAGTCTGGAGTTTAGCCCAAGCATGAGCATTGTGGTCA 76 consensus_14979#7 CGGCACTC-TGTGTGCAA-TACGAGTCTG-AGTTTAGACCAAGCATGAGCATTGTGGTCA 68 consensus_14979#3 -------------------------------------------------CATTGTGGTCA 11 consensus_14979#0 CGGCACTC-TGTGTGCAA-TACGAGTCTG-AGTTTAGACCAAGCATGAGCATTGTGGTCA 477 consensus_14979#4 ------------------------------------------------------------ consensus_14979#1 TTACTGTGTGGAAGGAAATCAGCGCCTAGTGGCCTACGAATTTGCTACGATGGGTTCTCT 243 consensus_14979#6 ------------------------------------------------------------ consensus_14979#5 ---------------------------------------------------TTTTGCTCC 9 consensus_14979#2 AGGCNCTCTCCCCTCTTCTCCAGCATAAACCGCCACCGC--CACCAGCCGTTGCTCCTG- 133 consensus_14979#7 AGGCACTCTCCCCTCTTCTCCAGCATAAACCGCCACCGC--CACCAGCCGTTGCTCCTG- 125 consensus_14979#3 AGGCACTTTCCCCTTTTTTCCAGCATAAACCGCCACCGC--CACCAGCCGTTGTTCCTG- 68 consensus_14979#0 AGGCACTCTCCCCTCTTCTCCAGCATAAACCGCCACCGC--CACCAGCCGTTGCTCCTG- 534 consensus_14979#4 ------------------TANAAAATAANCCNCCCCCCC--CCCCNCCCGNTGNTCTTN- 39 consensus_14979#1 GCATGATATTTTGCATGGAAGAAAGGGTGTCCCTGGTGCACAACCTGGCCCAGCACTTGA 303 consensus_14979#6 ------------------------------------CTCTCAACCTGGCC--ACACTTG- 21 consensus_14979#5 CAAAAGTGATGATCCCACAAAAGCACCTCCTCCCATTGAAGTACCAGAATTATCATTTG- 68 ** * consensus_14979#2 AGACCTGAGCTCCAGATTCAACTGCTTCTTATGCTTTTACTTCCGAGTTTCAACATGGAT 193 consensus_14979#7 AGACCTGAGCTCCAGATTCAACTGCTTCTTATGCTTTTACTTCCGAGTTTCAACATGGAT 185 consensus_14979#3 AGACCTGAGCTCCAGATTCAACTGCTTCTTATGCTTTTACTTCCGAGTTTCAACATGGAT 128 consensus_14979#0 AGACCTGAGCTCCAGATTCAACTGCTTCTTATGCTTTTACTTCCGAGTTTCAACATGGAT 594 consensus_14979#4 ANCCCTGNGCTCCANATNCACCNGNTTCTTAGGCTTTTNCTTCCGNGTTTCACCNGGGNN 99 consensus_14979#1 CTGGATGCAG-CGAGTGAGAATTGCTATTGATGCTGCTAA---AGGGCTAGAATATCTTC 359 consensus_14979#6 CTGGATGCAGACGAGTGAGAATTGCTATTGATGCTGCTAA---AGG-CTAGAAAATCTTC 77 consensus_14979#5 ATGAACTGAA---AGAGAAGACTGATAATTTTGGTTCAAA---GGCTTTAGTTGGTGAAG 122 * * * * * * * * consensus_14979#2 GTAAAGAGGGATGGAATTTCTTCATCGG-TCCCTGTCGTTACTGTTTCATGCT--TGCCA 250 consensus_14979#7 GTAAAGAGGGATGGAATTTCTTCATCGG-TCCCTGTCGTTACTGTTTCATGCT--TGCCA 242 consensus_14979#3 GTAAAGAGGGATGGAATTTTTTCATCGG-TCCCTGTCGTTACTGTTTCATGCT--TGCCA 185 consensus_14979#0 GTAAAGAGGGATGGAATTTCTTCATCGG-TCCCTGTCGTTACTGTTTCATGCT--TGCCC 651 consensus_14979#4 GTAAANAGGAATGGAATTTTTTCANCGGGTCCCTGTCGTTACTGTTTCATGCT--TGCCA 157 consensus_14979#1 -ATGAGAAGGTCCAACCTTCTATAGTCCATCGGGACATACGCTCTAGCAATGTTCTTCTA 418 consensus_14979#6 -ATAAGAAGGGC-AACCTTCTATAGTCCATCGGGACATACACTCTAACAATGT-CTTCTA 134 consensus_14979#5 GATCATATGGAAAAGTGTATTATGCTAC-TCTAGACA---ACGGAAAGCAAGT--TGCTG 176 * * * * * ** * * * * consensus_14979#2 ATTGGTTACCATGCCGTTTAAGTACTGGTCCTGTGAGCTTTACAATAGATTTTTGGTGTT 310 consensus_14979#7 ATTGGTTACCATGCCGTTTAAGTACTGGTCCTGTGAGCTTTACAATAGATTTTTGGTGTT 302 consensus_14979#3 ATTGGTTACCATGCCGTTTAAGTACTGGTCCTGTGAGCTTTACAATAGATTTTTGGTGTT 245 consensus_14979#0 ATTGGTTACCATGCCGTTTAAGTACTGGTCCTGTGAGCTTTACAATAGATTTTTGGTGTT 711 consensus_14979#4 ATTGGTTACCATGCCGTTTAAGTACTGGTCCTGTGAGCTTTACAATAGATTTTTGGTGTT 217 consensus_14979#1 TTTGAGGACTACAAAGCAAAAATTGCAGATTT-CAATCCTTCAAATCAGTCTCC-----T 472 consensus_14979#6 TT--GNGACTCCAAA-CCAAAATTGCAGATTT-CAATCCT-CAAATAAGCTTCA-----T 184 consensus_14979#5 TTAAAAAGCTTGATGCTTCAA----CAGAACC-TGAGGTTGATAATGA-TTTTT-----T 225 * * ** * * * *** * * consensus_14979#2 TACACTCGGAGCTTTCCTTGTCATTCCTTTCATGTGTGCTTATGCTGAGTGCTGTGCTGC 370 consensus_14979#7 TAAAAAAAAAAAAA---------------------------------------------- 316 consensus_14979#3 TACACTCGGAGCTTTCCTTGTCATTCCTTTCATGTGGGCTTATGCTGAGTGCTGTGCTGC 305 consensus_14979#0 TACACTCGGAGCTTTCCTTGTCATTCCTTTCATGTGTGCTTATGCTGAGTGCTGTGCTGC 771 consensus_14979#4 TACACTCGGAGCTTTCCTTGTCATTCCTTTCATGTGTGCTTATGCTGAGTGCTGTGCTGC 277 consensus_14979#1 GATAT---GGCTGCTCGTTTGCACTCAACTCGTGTCCTTGGAA-CCTTCGGCTATCATGC 528 consensus_14979#6 -ATAT---GGCTGGTCGCTTG-ACTCA-CTCATGTCCTTGGAA-CCCTCG-TTGTTATGC 236 consensus_14979#5 GACAC---AGGTGTCCATTGTTGTCAAGATAAAGACATTGAAAATTTTTGTGTGAAATGC 282 * * consensus_14979#2 CTTCGTTGGTCGGCAAAGTTGTGTTTTTAGCTGCCCAGCGGTGGTGATCACCGAATAATC 430 consensus_14979#7 ------------------------------------------------------------ consensus_14979#3 CTTCGTTGGTCGGCAAAGTTGTGTTTTTAGCTGCCCAGCGGTGGTGATCCCCGAATAATC 365 consensus_14979#0 CTTCGTTGGTCGGCAAAGTTGTGTTTTTAGCTGCCCAGCGGTGGTGATCACCGAATAATC 831 consensus_14979#4 CTTCGTTGGTCGGCAAAGTTGTGTTTTTAGCTGCCCANCGGTGGTGATCNCCGAATANTC 337 consensus_14979#1 TCCCAGTAT----GCCATGACTGGGGCCGGTTGACTCAAAAAAAGCGCCGGC-TATAGTT 583 consensus_14979#6 ACCCGAGATT---GCCATGATTGG--CCAGTTGGCTCAAAAAAAGAGTTGATATATAGTT 291 consensus_14979#5 TTGCGTTACTAGTGTTGGAAGAGAAATCAAACGCCCTAATGTGCCTAACGAATAATGTCT 342 consensus_14979#2 TTGTTCTGAGTTGAACTGTGACATGG-GAAGGTTCTAAATCTAACTGTTCATGGCTTGAC 489 consensus_14979#7 ------------------------------------------------------------ consensus_14979#3 TTGTTTTGAGTTGAACTGTGACATGG-GAAGGTTTTAAATTTAAAAAAAAAAAAAAAAAA 424 consensus_14979#0 TTGTTCTGAGTTGAACTGTGACATGG-GAAGGTTCTAAATCTAACTGTTCATGGCTTGAC 890 consensus_14979#4 NTGTTNTGAGTTGAACTGCCNCATCNCGAAGGTTCTAAATCTAACTGTTCATGGCTTGAC 397 consensus_14979#1 TTGGAGT-GGTCTTCTAAGCCTCTTACCGGGA--AGGAACCCGTAGATCCACATGCCTTG 640 consensus_14979#6 TTGGAGTTGGTCCCCCCCCCCCCTTAACCGGG--GGGAACCCGCAATACCCCT------- 342 consensus_14979#5 AACGAATAGGGTTACTATTGACATAGATAATATTAGGCATTGGAATAGAATCAGGGGTTG 402 consensus_14979#2 AAAAAAAAAAAAAAA--------------------------------------------- 504 consensus_14979#7 ------------------------------------------------------------ consensus_14979#3 AAAAAAAAA--------------------------------------------------- 433 consensus_14979#0 ATGCTTTTGGTGTGTGCCTACGTGAGAGGATGATGGTTCTTCACTTTGTTAACATGTGAG 950 consensus_14979#4 ATGCAAAAAAAA------------------------------------------------ 409 consensus_14979#1 GGCACCAAGCTGGTCATGGGCACACCTCGTTGCAAGACCTGGGAACAATGCGTGGCCGAT 700 consensus_14979#6 ------------------------------------------------------------ consensus_14979#5 TT---------------------------------------------------------- 404 consensus_14979#2 ------------------------ consensus_14979#7 ------------------------ consensus_14979#3 ------------------------ consensus_14979#0 TTATGAATGGATGCTTTTG----- 969 consensus_14979#4 ------------------------ consensus_14979#1 CTGAAGGCAGTTCCCCAAAAGGGT 724 consensus_14979#6 ------------------------ consensus_14979#5 ------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||