These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15031#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1096 fasta sequence [GAGTAGAAAACTGGTCCTGTGGGCTTTTAAGCGGCGTCGCCGGTGGCCACGCACGCACCCAACTCTCACCTACTCTGCTTCTGCTGCCCTCCTGCATCGACTCACTCCTCCACTCCCGTGTCGTCGTCGTCGTCGTCGTCTGCTTCGTCGGCCGCCGCGCGCCGCCCACGATGGCGTCGTCGGGGGACAGCAGCGGCAAGCAGCGGAGCGACGAGGAGTGGCGCGCCGTCCTCTCCCCGGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAGTTACCTGGAACAGGTGAGTACAACAAGTTCTATGGTGATGGGGTCTACAACTGTGCTGGCTGTGGAACACCCCTGTACAAATCCACAACCAAGTTTGATTCTGGTTGTGGCTGGCCAGCATTTTTTGAGGGACTTCCTGGAGCCATAAACCGAACACCGGATCCTGATGGAAGGAGGGTAGAAATCACGTGTGCAGCTTGCGGTGGGCATTTGGGTCACGTGTTCAAAGGAGAAGGCTTGAAGACGCCTACTGATGAGCGTTACTTGGGGGAACAGGGTTGGGTATCAAGTTGACCTGCGGGCTGCTGAATGACTGTGGCAGGTAATTATAATTTGGATGCTAATTAGGTACGGGCTTATAATGTGTTAAGTCCTTCTTGTTGTTTTATTATATGCACTGAGTCTTGTGTTGTGAAGTTCATGTGTGTAACTTGGGATTCCGTATTTTTTGTAAAACCGGTGTGTATTTTCTATTTTCATCGTCGTCTATGACGGGCGCGCCGTTCGTCGTGCGATAAAGTGGGCCTTGGCCGTCCGTGTATCTCGTTATGTTCTTGGTCCGCGACGTGGAGGGGGGTGGCGCCGCTGCTCTGATTTGCTAGTTTTCTGCCTGGTCATCATTATTTTCCGCGGCTTTGCCCTCGCCCGCCCTTTTTGTTGTTTTTTATCTTGCGCCGGTCTAATACTTGTCGGTGCGATCGCTGTCTGGTCGGATGGGGCTTGTTGGATTCTCGCTGCTTCCTTGCCTTGATTCTTACGCTGCCCGCTGGGTGTTAGATCAAGTGCGGATCAAAATGAGTGCAGACGCGGCGCACCCGTTG] [+] EMBL CF333285 [GAGTAGAAAACTGGTCCTGTGGGCTTTTAAGCGGCGTCGCCGGTGGCCACGCACGCACCCAACTCTCACCTACTCTGCTTCTGCTGCCCTCCTGCATCGACTCACTCCTCCACTCCCGTGTCGTCGTCGTCGTCGTCGTCTGCTTCGTCGGCCGCCGCGCGCCGCCCACGATGGCGTCGTCGGGGGACAGCAGCGGCAAGCAGCGGAGCGACGAGGAGTGGCGCGCCGTCCTCTCCCCGGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAGTTACCTGGAACAGGTGAGTACAACAAGTTCTATGGTGATGGGGTCTACAACTGTGCTGGCTGTGGAACACCCCTGTACAAATCCACAACCAAGTTTGATTCTGGTTGTGGCTGGCCAGCATTTTTTGAGGGACTTCCTGGAGCCATAAACCGAACACCGGATCCTGATGGAAGGAGGGTAGAAATCACGTGTGCAGCTTGCGGTGGGCATTTGGGTCACGTG ] [+] EMBL BE039661 [ CCCGTGTCGTCGTCGTCGTCGTCGTCTGCTTCGTCGGCCGCCGCGCGCCGCCCGCGATGGCGTCGTCGGGGGACAGCAGCGGCAAGCAGCGGAGCGACGAGGAGTGGCGCGCCGTCCTCTCCCCGGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAGTTACCTGGAACAGGTGAGTACAACAAGTTCTATGGTGATGGGGTCTACAACTGTGCTGGCTGTGGAACACCCCTGTACAAATCCACAACCAAGTTTGATTCTGGTTGTGGCTGGCCAGCATTTTTTGAGGGACTTGCTGGAGCCATAAACCGAACACCGGATCCTGATGGAAGGAGGGTAGAAATCACGTGTGCAGCTTGCGGTGGGCATTTGGGTCACGTGTTCAAAGGAGAAGGCTTGAAGACGCCTACTGATGAGCGTTACTTGGGGGAACAGGGTTGGGTATCAAGTTGACCTGCGGGCTGCTGAATGACTGTGGCAGGTAATTATAATTTGGATGCTAATTAGGTACGGGCTTATAATGTGTTAAGTCCTTCTTGTTGTTTTATTATATGCACTGAGTCTTGTGTTGTGAAGTTCATGTGTGTAACTTGGGATTCCGTATTTTTTGTAAAACCGGTGTGTATTTTCTATTTTCATCGTCGTCTATGACGGGCGCGCCGTTCGTCGTGCGATAAAGTGGGCCTTGGCCGTCCGTGTATCTCGTTATGTTCTTGGTCCGCGACGTGGAGGGGGGTGGCGCCGCTGCTCTGATTTGCTAGTTTTCTGCCTGGTCATCATTATTTTCCGCGGCTTTGCCCTCGCCCGCCCTTTTTGTTGTTTTTTATCTTGCGCCGGTCTAATACTTGTCGGTGCGATCGCTGTCTGGTCGGATGGGGCTTGTTGGATTCTCGCTGCTTCCTTGCCTTGATTCTTACGCTGCCCGCTGGGTGTTAGATCAAGTGCGGATCAAAATGAGTGCAGACGCGGCGCACCCGTTG] consensusID : consensus_15031#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 792 fasta sequence [ACTACTAGCCCATAACAAAATGAACGGTCAATTGCTAGGTGGATTGAGCTCTGATTGAATGGTCAGGCTGTTTAGATTTTCCTCAATTATCGTCACTTGAGAGGTAAGCTGTTTACTGACGGATATATGTTGGAACACTGCATATGGCATGTTGTCGGGTAAAATAGCGTAGTTATTAAGACCATGACCGCTTTGTTTGTTACTTGATGTGAAATGATTTCTAGAAATGTTGCTACTATGCTGAAGCAGATGTCCTTTCAAAGATATTATTAAACTCTAGTTTCCATCCAGGTTACCTGGAACAGGTGAGTACAACAAGTTCTATGGTGATGGGGTCTACAACTGTGCTGGCTGTGGAACACCCCTGTACAAATCCACAACCAAGTTTGATTCTGGTTGTGGCTGGCCAGCATTTTTTGAGGGACTTTCTGGAGCCATAAACCGAACACCGGATCCTGATGGAAGGAGGGTAGAAATCACGTGTGCAGCTTGCGGTGGGCATTTGGGTCACGTGTTCAAAGGAGAAGGCTTCAAGACGCCTACTGATGAGCGTCACTGTGTGAACAGTGTTTCGATCAAGTTCACCCCGGCCTCCTAAATCCTTTCCCAGGTCATTATTATTGGAGGTGAATTCCCCAGGGCTAAAGCTGTGGAAAGCACTACAAAATAATGAATAAAATCACAGAGACATATCCTGTTTGTCCATATATGAATTCATCTCCTGTTAATTTAGCTGTAAACTTGTAACTTAACATTGCTGGGAATGGTAAATGAATGAATAAATGAATCTGG] [-] EMBL CB663476 [ACTACTAGCCCATAACAAAATGAACGGTCAATTGCTAGGTGGATTGAGCTCTGATTGAATGGTCAGGCTGTTTAGATTTTCCTCAATTATCGTCACTTGAGAGGTAAGCTGTTTACTGACGGATATATGTTGGAACACTGCATATGGCATGTTGTCGGGTAAAATAGCGTAGTTATTAAGACCATGACCGCTTTGTTTGTTACTTGATGTGAAATGATTTCTAGAAATGTTGCTACTATGCTGAAGCAGATGTCCTTTCAAAGATATTATTAAACTCTAGTTTCCATCCAGGTTACCTGGAACAGGTGAGTACAACAAGTTCTATGGTGATGGGGTCTACAACTGTGCTGGCTGTGGAACACCCCTGTACAAATCCACAACCAAGTTTGATTCTGGTTGTGGCTGGCCAGCATTTTTTGAGGGACTTTCTGGAGCCATAAACCGAACACCGGATCCTGATGGAAGGAGGGTAGAAATCACGTGTGCAGCTTGCGGTGGGCATTTGGGTCACGTGTTCAAAGGAGAAGGCTTCAAGACGCCTACTGATGAGCGTCACTGTGTGAACAGTGTTTCGATCAAGTTCACCCCGGCCTCCTAAATCCTTTCCCAGGTCATTATTATTGGAGGTGAATTCCCCAGGGCTAAAGCTGTGGAAAGCACTACAAAATAATGAATAAAATCACAGAGACATATCCTGTTTGTCCATATATGAATTCATCTCCTGTTAATTTAGCTGTAAACTTGTAACTTAACATTGCTGGGAATGGTAAATGAATGAATAAATGAATCTGG] consensusID : consensus_15031#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 776 fasta sequence [TTCCTCGAGCACTGTTGGCCTACTGGAACTCTCACCTACTCTGCTTCTGCTGCCCTCCTGCATCGACTCACTCCTCCACTCCCGTGTCGTCGTCGTCGTCGTCGTCTGCTTCGTCGGCCGCCGCGCGCCGCCCGCGA-TGGCGTCGTCGGGGGACAGCAGCGGCAAGCAGCGGAGCGACGAGGAGTGGCGCGCCGTCC-TCTCCCCGGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA-GTTACCTGGAACAGGTG-AGTACAACAAGTTCTAT-GGTGATGGGGTCTAC-A-ACTGTGCTGGCTGTGGAACA-CCCCTGTACAAATCCAC-AACC-AAGTTTGATTCTGGTTGTGGCTGGCCAGCA-TTTTTTGAGGGACTTCCT-GGAGCCATAAACCGAACA-CCGGATCCTGATGGAAGGAGGGTAGAAATCACG-TGTGCAGCTTGCGG-TGGGCATTT--GGGTCACGTGTTCAAAGGAGAAGGCTTCAAGACGCCTACTGATGAGCGTCACTGTGTGAACAGTGTTTCGATCAAGTTCACCCCGGCCTCCTAAATCCTTTCCCAGGTCATTATTATTGGAGGTGAATTCCCCAGGGCTAAAGCTGTGGAAA-GCACTA-CAAAATAATGAAT-AAAATCACAGAGACATATCCTGTTTGTCCATATATGAATTCATCTCCTGTTAATTTAGCTGTAAACTTGTAACTTAACA-TTGCTGGGAATGGTAAATGAATGAATAAATGAATCTGGTTCATTAGTTAAAAAAAAAAAAAAAAAGGCCACAT] [+] EMBL AK109429 [TTCCTCGAGCACTGTTGGCCTACTGGAACTCTCACCTACTCTGCTTCTGCTGCCCTCCTGCATCGACTCACTCCTCCACTCCCGTGTCGTCGTCGTCGTCGTCGTCTGCTTCGTCGGCCGCCGCGCGCCGCCCGCGA TGGCGTCGTCGGGGGACAGCAGCGGCAAGCAGCGGAGCGACGAGGAGTGGCGCGCCGTCC TCTCCCCGGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA GTTACCTGGAACAGGTG AGTACAACAAGTTCTAT GGTGATGGGGTCTAC A ACTGTGCTGGCTGTGGAACA CCCCTGTACAAATCCAC AACC AAGTTTGATTCTGGTTGTGGCTGGCCAGCA TTTTTTGAGGGACTTCCT GGAGCCATAAACCGAACA CCGGATCCTGATGGAAGGAGGGTAGAAATCACG TGTGCAGCTTGCGG TGGGCATTT GGGTCACGTGTTCAAAGGAGAAGGCTTCAAGACGCCTACTGATGAGCGTCACTGTGTGAACAGTGTTTCGATCAAGTTCACCCCGGCCTCCTAAATCCTTTCCCAGGTCATTATTATTGGAGGTGAATTCCCCAGGGCTAAAGCTGTGGAAA GCACTA CAAAATAATGAAT AAAATCACAGAGACATATCCTGTTTGTCCATATATGAATTCATCTCCTGTTAATTTAGCTGTAAACTTGTAACTTAACA TTGCTGGGAATGGTAAATGAATGAATAAATGAATCTGGTTCATTAGTTAAAAAAAAAAAAAAAAAGGCCACAT] [+] EMBL AK068764 [ TCTCACCTACTCTGCTTCTGCTGCCCTCCTGCATCGACTCACTCCTCCACTCCCGTGTCGTCGTCGTCGTCGTCGTCTGCTTCGTCGGCCGCCGCGCGCCGCCCGCGA TGGCGTCGTCGGGGGACAGCAGCGGCAAGCAGCGGAGCGACGAGGAGTGGCGCGCCGTCC TCTCCCCGGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA GTTACCTGGAACAGGTG AGTACAACAAGTTCTAT GGTGATGGGGTCTAC A ACTGTGCTGGCTGTGGAACA CCCCTGTACAAATCCAC AACC AAGTTTGATTCTGGTTGTGGCTGGCCAGCA TTTTTTGAGGGACTTCCT GGAGCCATAAACCGAACA CCGGATCCTGATGGAAGGAGGGTAGAAATCACG TGTGCAGCTTGCGG TGGGCATTT GGGTCACGTGTTCAAAGGAGAAGGCTTCAAGACGCCTACTGATGAGCGTCACTGTGTGAACAGTGTTTCGATCAAGTTCACCCCGGCCTCCTAAATCCTTTCCCAGGTCATTATTATTGGAGGTGAATTCCCCAGGGCTAAAGCTGTGGAAA GCACTA CAAAATAATGAAT AAAATCACAGAGACATATCCTGTTTGTCCATATATGAATTCATCTCCTGTTAATTTAGCTGTAAACTTGTAACTTAACA TTGCTGGGAATGGTAAATGAATGAATAAATGAAT ] [+] EMBL AU069665 [ TTCTCCTGCCCTCCTGCATCGACTCACTCCTCCACTCCCGTGTCGTCGTCGTCGTCGTCGTCTGCTTCGTCGGCCGCCGCGCGCCGCCCGCAA TGGCGTCGTCGGGGGACAGCAGCGGCAAGCAGCGGA NNACGAGGAGTGGCGCGCCGTCC TCTCCCCGGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA GTTACCTGGAACAGTGG AGTACAACAAGTTCTAT GGTGATGGGGTCTAC A ACTGTGCTGGCTGTGGAACA CCCCTGTACAAATCCAC AACC AAGTTTNATTCTGGTTGTGGCTGGCCAGCA TTTTTTAAGGGACTTCCT GGAGCCATAAACNGAACA CCGGATCCTAATGGAAGGAGGGTAGAAATCACG TGTGCAGTTTNCGGTTGGGCATTTTGGGGTCACGTGTTCAAAGGAGAAAGGTTCAAGACGCC ] [+] EMBL AY224463 [ CTGCCCTCCTGCATCGACTCACTCCTCCACTCCCGTGTCGTCGTCGTCGTCGTCGTCTGCTTCGTCGGCCGCCGCGCGCCGCCCGCGA TGGCGTCGTCGGGGGACAGCAGCGGCAAGCAGCGGAGCGACGAGGAGTGGCGCGCCGTCC TCTCCCCGGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA GTTACCTGGAACAGGTG AGTACAACAAGTTCTAT GGTGATGGGGTCTAC A ACTGTGCTGGCTGTGGAACA CCCCTGTACAAATCCAC AACC AAGTTTGATTCTGGTTGTGGCTGGCCAGCA TTTTTTGAGGGACTTCCT GGAGCCATAAACCGAACA CCGGATCCTGATGGAAGGAGGGTAGAAATCACG TGTGCAGCTTGCGG TGGGCATTT GGGTCACGTGTTCAAAGGAGAAGGCTTCAAGACGCCTACTGATGAGCGTCACTGTGTGAACAGTGTTTCGATCAAGTTCACCCC ] [+] EMBL CA754650 [ CCTCCTGCATCGACTCACTCCTCCACTCCCGTGTCGTCGTCGTCGTCGTCGTCTGCTTCGTCGGCCGCCGCGCGCCGCCCGCGA TGGCGTCGTCGGGGGACAGCAGCGGCAAGCAGCGGAGCGACGAGGAGTGGCGCGCCGTCC TCTCCCCGGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGA GTTACCTGGAACAGGTG AGTACAACAAGTTCTAT GGTGATGGGGTCTAC A ACTGTGCTGGCTGTGGAACA CCCCTGTACAAATCCAC AACC AAGTTTGATTCTGGTTGTGGCTGGCCAGCA TTTTTTGAGGGACTTCCT GGAGCCATAAACCGAACA CCGGATCCTGATGGAAGGAGGGTAGAAATCACG TGTGCAGCTTGCGG TGGGCATTT GGGTCACGTGTTCAAAGGAGAAGGCTTCAAGACGCCTACTGATGAGCGTCACTGTGTGAACAGTGTTTCGATCAAGTTCACCCCGGCCTCCTAAATCCTTTCCCAGGTCATTATTATTGGAGGTGAATTCCCCAGGGCTAAAGCTGTGGAAA GCACTA CNAAATAATGAAT AAAATCACAGAGACTTATCCTGTNTGTCCATATATGAATTCATCTCCTGTTA ] [+] EMBL OS07302A [ CGCGCGCCGCCCGCGATTGGCGTCGTCGGGGGACAGCAGCGGCAAGCAGCGGACNGCTGAGGAGTGGCGCGCCGTCC TCTCCCCGGAGCAGTTCCGCATCCTCNGCCTCAAGGGCACCGANGTTACCTGGAACA GTGAAGTACAACAAGTTCTAT GGTGATGGGGTCTAC A ACTGTGCTGGCTGTGGAACA CCCCTGTACAAATCCAC AACC AAGTTTGATTCTGGTTGTGGCTGGCCAGGATTTTTTTGAGGGACTTCCTGGGAGCCATAAACCGAACA CCGGATCCTGATGGAAGGAGGGTAGAAATCACGTTGTGCAGCTTGCG ] [-] EMBL CF333286 [ GCGGCAAGCAGCGGAGCGACGAGGAGTGGCGCGCCGTCCTTCTCCCCGGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAGGTTACCTGGAACAGGTG AGTACAACAAGTTCTAT GGTGATGGGGTCTAC A ACTGTGCTGGCTGTGGAACACCCCCTGTACAAATCCAC AACCAAAGTTTGATTCTGGTTGTGGCTGGCCAGCA TTTTTTGAGGGACTTCCT GGAGCCATAAACCGAACA CCGGATCCTGATGGAAGGAGGGTAGAAATCACG TGTGCAGCTTGCGG TGGGCATTT GGGTCACGTGTTCAAAGGAGAAGGCTTCAAGACGCCTACTGATGAGCGTCACTGTGTGAACAGTGTTTCGATCAAGTTCACCCCGGCCTCCTAAATCCTTTCCCAGGTCATTATTATTGGAGGTGAATTCCCCAGGGCTAAAGCTGTGGAAA GCACTA CAAAATAATGAAT AAAATCACAGAGACATATCCTGTTTGTCCATATATGAATTCATCTCCTGTTAATTTAGCTGTAAACTTGTAACTTAACA TTGCTGGGAATGGTAAATGAATGAATAAATGAATCTGGTTCATTAGTTAAAAAAA ] [+] EMBL BI795312 [ TACAACAAGTTCTAT GTTGATGGGGTCTAC A ACTGTGCT GCTGTGGAACA CCCCTGTACAAATCCACAAACC AAGTTTGATTCTGGTTGTGGCTGGCCAGCA TTTTTTGAGGGACTTCCT GGAGCCATAAACCGTACA CCGGATCCTGATGGAAGGAGGGTAGAAATCACG TGTGCAGCTTGCGG TGGGCATTT GGGTCACGTGTTCAAAGGAGAAGGCTTCAAGACGCCTACTGATGAGCGTCACTGTGTGAACAGTGTTTCGATCAAGTTCACCCCGGCCTCCTAAATCCTTTCCCAGGTCATTATTATTGGAGGTGAATTCCCCAGGGCTAAAGCTGTGGAAA GCACTA CAAAATAATGAAT AAAATCACAGAGACATATCCTGTTTGTCCATATATGAATTCATCTCCTGTTAATTTAGCTGTAAACTTGTAACTTAACA TTGCTGGGAATGGTAAATGAATGAATAAATGAATCTGGTTCATTAGTTAAAAAAAAAA ] [+] EMBL BI798447 [ AGTTCTATGGGTGATGGGGTCTAC ACACTGT CT GCTGTGGAACA CCCCTGTACAAATCCAC AACC AAGTTTGATTCTGGTTGTGGCTGGCCAGCA TTTTTTGAGGGACTTCCT GGAGCCATAAACCGTACACCCGGATCCTGATGGAAGGAGGGTAGAAATCACG TGTGCAGCTTGCGG TGGGCATTT GGGTCACGTGTTCAAAGGAGAAGGCTTCAAGACGCCTACTGATGAGCGTCACTGTGTGAACAGTGTTTCGATCAAGTTCACCCCGGCCTCCTAAATCCTTTCCCAGGTCATTATTATTGGAGGTGAATTCCCCAGGGCTAAAGCTGTGGAAACGCCCTACCCAAATAATGAATGAAAATCACAGAGACATATCCTGTTTGTCCATATATGAATTCATCTCCTGTTAATTTAGCTGTAAACTTGTAACTTAACACTTGCTGGGAATGGTAAATGAATGAATAAATGAATCTGCTTCATTAGTTAAAAAAAAAA ] [+] EMBL BI807996 [ GTTCTAT GTGATGGGGTCTACAA ACTGTGCTGCCTGTGGAACA CCCCTGTAC AATCCAC AACC AAGTTTGATTCT GTTGTGGCTGCCCAGCA TTTTTTGAGGGACTTCCT GGAGCCATAAACCGAACA CCGGATCCTGATGGAAGGAGGGTAGAAATCACG TGTGCAGCTT C G TGGGCATTT GGGTCACGTGTTCAAAGGAGAAGGCTTCAAGACGCCTACTGATGAGCGTCACTGTGTGAACAGTGTTTCGATCAAGTTCACCCCGGCCTCCTAAATCCTTTCCCAGGTCATTATTATTGGAGGTGAATTCCCCAGGGCTAAAGCTGTGGAAA GCACTA C AAATAATGAAT AAAATCACAGAGACATATCCTGTTTGTCCATATATGAATTCATCTCCTGTTAATTTAGCTGTAAACTTGTAACTTAACA TTGCTGGGAATGGTAAATGAATGAATAAATGAATCTGGTTCATTA AAAAAAAAA ] [+] EMBL AU164580 [ CCAC AACC AAGTTTGATTCTGGTTGTGGCTGGCCAGCA TTTTTTGAGGGACTTCCT GGAGCCATAAACCGAACA CCGGATCCTGATGGAAGGAGGGTAGAAATCACG TGTGCAGCTTGCGG TGGGCATTT GGGTCACGTGTTCAAAGGAGAAGGCTTCAAGACGCCTACTGATGAGCGTCACTGTGTGAACAGTGTTTCGATCAAGTTCACCCCGGCCTCCTAAATCCTTTCCCAGGTCATTATTATTGGAGGTGAATTCCCCAGGGCTAAAGCTGTGGAAA GCACTA CAAAATAATGAAT AAAATCACAGAGACATATCCTGTTTGTCCATATATGAATTCATCTCCTGTTAATTTAGCTGTAAACTTGTAACTTAACA TTGCTGGGAATGGTAAATGAATGAATAAAaaa ] [+] EMBL AU182190 [ C AACC AAGTTTGATTCTGGTTGTGGCTGGCCAGCA TTTTTTGAGGGACTTCCT GGAGCCATAAACCGAACA CCGGATCCTGATGGAAGGAGGGTAGAAATCACG TGTGCAGCTTGCGG TGGGCATTT GGGTCACGTGTTCAAAGGAGAAGGCTTCAAGACGCCTACTGATGAGCGTCACTGTGTGAACAGTGTTTCGATCAAGTTCACCCCGGCCTCCTAAATCCTTTCCCAGGTCATTATTATTGGAGGTGAATTCCCCAGGGCTAAAGCTGTGGAAA GCACTA CAAAATAATGAAT AAAATCACAGAGACATATCCTGTTTGTCCATATATGAATTCATCTCCTGTTAATTTAGCTGTAAACTTGTAACTTAACA TTGCTGGGAATGGTAAATGAATGAATAAATGAATCTGGTTCATTAGTTAAAAAA ] [+] EMBL C98118 [ CA CCGGATCCTGATGGAANGAGGGTAGAAATCACG TGTNCCGCTTGCGG TGGGCNTTT GGGTCNCGTGTTCAAAGGAGAAGGCTTCAAGACGCCTACTGATGAGCGTCACTGTGTGAACAGTGTTTCGATCAAGTTCACCCCGGCCTCCTAAATCCTTTCCCAGGNCATTATTATTGGAGGTGAATTCCCCAGGGCTAAAGCTGTGGAAA GCACTA CAAACTAATGAAT AAAATCNCNGAGACATATCCTGTTTGTCCATATATGAATTCATCTCCTGTTAATTTAGCTGTAAACTTGTAACTTAACA TTGCTGGGAATGGTAAATGAATGAATAAATGAATCTGGTTCATTAGTTAAAAAAAAAAAAAAAAAaa ] [+] EMBL BQ908207 [ AGAAATCACG TGTGCAGCTTGCGG TGGGCATTT GGGTCACGTGTTCAAAGGAGAAGGCTTCAAGACGCCTACTGATGAGCGTCACTGTGTGAACAGTGTTTCGATCAAGTTCACCCCGGCCTCCTAAATCCTTTCCCAGGTCATTATTATTGGAGGTGAATTCCCCAGGGCTAAAGCTGTGGAAA GCACTA CAAAATAATGAAT AAAATCACAGAGACATATCCTGTTTGTCCATATATGAATTCATCTCCTGTTAATTTAGCTGTAAACTTGTAACTTAACA TTGCTGGGAATGGTAAATGAATGAATAAATGAATCTGGTTCATTAGTTAAAAAAAAAA ] consensusID : consensus_15031#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 644 fasta sequence [CTGCTTCTGCTGCCCTCCTGCATCGACTCACTCCTCCACTCCCGTGTCGTCGTCGTCGTCGTCGTCTGCTTCGTCGGCCGCCGCGCGCCGCCCGCGATGGCGTCGTCGGGGGACAGCAGCGGCAAGCAGCGGANCGACGANGANTGGCGCGCCGTCCTCTCCCCGGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAGTTACCTGGAACAGGTGAGTNCAACAAGTTCTATGGTGATGGGGTCTACAACTGTGCTGGCTGTGGAACACCCCTGTACAAATCCACAACCAAGTTTGATTCTGGTTGTGGCTGGCCAGCATTTTTTGAGGGACTTCCTGGANCCATAAACCGAACACCGGATCCTGATGGAAGGANGGTNGAAATCACGTGTGCAGCTTGCGGTGGGCATTTGGGTCACGTGTTCAAANGANAAAGCTCAAGACCCTACTGATAACGTCACTGTGTGAACANTGTTTCGATCAANTTCACCCCGGCTCCTAAATCCTTTCCCAAGTCATTATTATTGGAAGTGAATTCCCCANGGGTNAAACTNNTGGAAANCCCTNCNAATAATGAATNAAATCCCNNAAACTTCCCGGTTTGTCCANATATGAANTCCCCCCCNGTTAATTAACNGTTAAC] [+] EMBL BE228261 [CTGCTTCTGCTGCCCTCCTGCATCGACTCACTCCTCCACTCCCGTGTCGTCGTCGTCGTCGTCGTCTGCTTCGTCGGCCGCCGCGCGCCGCCCGCGATGGCGTCGTCGGGGGACAGCAGCGGCAAGCAGCGGANCGACGANGANTGGCGCGCCGTCCTCTCCCCGGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGAGTTACCTGGAACAGGTGAGTNCAACAAGTTCTATGGTGATGGGGTCTACAACTGTGCTGGCTGTGGAACACCCCTGTACAAATCCACAACCAAGTTTGATTCTGGTTGTGGCTGGCCAGCATTTTTTGAGGGACTTCCTGGANCCATAAACCGAACACCGGATCCTGATGGAAGGANGGTNGAAATCACGTGTGCAGCTTGCGGTGGGCATTTGGGTCACGTGTTCAAANGANAAAGCTCAAGACCCTACTGATAACGTCACTGTGTGAACANTGTTTCGATCAANTTCACCCCGGCTCCTAAATCCTTTCCCAAGTCATTATTATTGGAAGTGAATTCCCCANGGGTNAAACTNNTGGAAANCCCTNCNAATAATGAATNAAATCCCNNAAACTTCCCGGTTTGTCCANATATGAANTCCCCCCCNGTTAATTAACNGTTAAC] consensusID : consensus_15031#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 316 fasta sequence [CGCGCGCCGCCCGCGATGGCGTCGTCGGGGGACAGCAGCGGCAAGCAGCGGANNCCCGAGGAGTGGCGCGCCGTCCTCTCCCCGGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGATTTCCATCCAGGTTACCTGGAACAGTGAGTACAACAAGTTCTATGGTGATGGGGTCTACAACTGTGCTGGCTGTGGAACACCCCTGTACAAATTCACAACCAAGTTTGATTCTGGTTGTGGCTGGCCAGCATTTTTTGAGGGACTTCCTGGAGCCATAAACCGAACANCGGATCCTGATGGAAGGAGGGTAGAAATC] [+] EMBL OSR0579A [CGCGCGCCGCCCGCGATGGCGTCGTCGGGGGACAGCAGCGGCAAGCAGCGGANNCCCGAGGAGTGGCGCGCCGTCCTCTCCCCGGAGCAGTTCCGCATCCTCCGCCTCAAGGGCACCGATTTCCATCCAGGTTACCTGGAACAGTGAGTACAACAAGTTCTATGGTGATGGGGTCTACAACTGTGCTGGCTGTGGAACACCCCTGTACAAATTCACAACCAAGTTTGATTCTGGTTGTGGCTGGCCAGCATTTTTTGAGGGACTTCCTGGAGCCATAAACCGAACANCGGATCCTGATGGAAGGAGGGTAGAAATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15031#0 GAGTAGAAAACTGGTCCTGTGGGCTTTTAAGCGGCGTCGCCGGTGGCCACGCACGCACCC 60 consensus_15031#4 ------------------------------------------------------------ consensus_15031#3 ------------------------------------------------------------ consensus_15031#2 -----------------------------------TTCCTCGAGCACTGTTGGCCTACTG 25 consensus_15031#1 ------ACTACTAGCCC-ATAACAAAATGAACGGT-CAATTGCTAGGTGGATTGAGCTCT 52 consensus_15031#0 -AACTCTCACCTACTCTGCTTCTGCTGCCCTCCTGCATCGACTCACTCCTCCACTCCCGT 119 consensus_15031#4 ------------------------------------------------------------ consensus_15031#3 ---------------CTGCTTCTGCTGCCCTCCTGCATCGACTCACTCCTCCACTCCCGT 45 consensus_15031#2 GAACTCTCACCTACTCTGCTTCTGCTGCCCTCCTGCATCGACTCACTCCTCCACTCCCGT 85 consensus_15031#1 GATTGAATGGTCAGGCTGTTTAGATTTTCCTCAATTATCG--TCACTTGAGAGGTAAGCT 110 consensus_15031#0 GTCGTCGTCGTCGTCGTCGTCTGCTTCGTCGGCCGCCGCGCGCCGCC---CACGATGGCG 176 consensus_15031#4 ------------------------------------CGCGCGCCGCC---CGCGATGGCG 21 consensus_15031#3 GTCGTCGTCGTCGTCGTCGTCTGCTTCGTCGGCCGCCGCGCGCCGCC---CGCGATGGCG 102 consensus_15031#2 GTCGTCGTCGTCGTCGTCGTCTGCTTCGTCGGCCGCCGCGCGCCGCC---CGCGATGGCG 142 consensus_15031#1 GTT-TACTGACGGATATATGTTGGAACACTGCATATGGCATGTTGTCGGGTAAAATAGCG 169 ** * * * ** *** consensus_15031#0 TCGTCGG-GGGACAGCAGCGGCA--AGCAGCGGAGCGACGAGGAGTGGC--------GCG 225 consensus_15031#4 TCGTCGG-GGGACAGCAGCGGCA--AGCAGCGGANNCCCGAGGAGTGGC--------GCG 70 consensus_15031#3 TCGTCGG-GGGACAGCAGCGGCA--AGCAGCGGANCGACGANGANTGGC--------GCG 151 consensus_15031#2 TCGTCGG-GGGACAGCAGCGGCA--AGCAGCGGAGCGACGAGGAGTGGC--------GCG 191 consensus_15031#1 TAGTTATTAAGACCATGACCGCTTTGTTTGTTACTTGATGTGAAATGATTTCTAGAAATG 229 * ** *** * ** * * * ** * consensus_15031#0 CCGTCCTCTCCCCGGAGCAGTTCCGCATCCTCCGCCTCAA--GGGCACCGA--------- 274 consensus_15031#4 CCGTCCTCTCCCCGGAGCAGTTCCGCATCCTCCGCCTCAA--GGGCACCGATTTCCATCC 128 consensus_15031#3 CCGTCCTCTCCCCGGAGCAGTTCCGCATCCTCCGCCTCAA--GGGCACCGA--------- 200 consensus_15031#2 CCGTCCTCTCCCCGGAGCAGTTCCGCATCCTCCGCCTCAA--GGGCACCGA--------- 240 consensus_15031#1 TTGCTACTATGCTGAAGCAGATGTCCTTTCAAAGATATTATTAAACTCTAGTTTCCATCC 289 * * * ***** * * * * * * * * consensus_15031#0 --GTTACCTGGAACAGGTGAGTACAACAAGTTCTATGGTGATGGGGTCTACAACTGTGCT 332 consensus_15031#4 AGGTTACCTGGAACAG-TGAGTACAACAAGTTCTATGGTGATGGGGTCTACAACTGTGCT 187 consensus_15031#3 --GTTACCTGGAACAGGTGAGTNCAACAAGTTCTATGGTGATGGGGTCTACAACTGTGCT 258 consensus_15031#2 --GTTACCTGGAACAGGTGAGTACAACAAGTTCTATGGTGATGGGGTCTACAACTGTGCT 298 consensus_15031#1 AGGTTACCTGGAACAGGTGAGTACAACAAGTTCTATGGTGATGGGGTCTACAACTGTGCT 349 ************** ***** ************************************* consensus_15031#0 GGCTGTGGAACACCCCTGTACAAATCCACAACCAAGTTTGATTCTGGTTGTGGCTGGCCA 392 consensus_15031#4 GGCTGTGGAACACCCCTGTACAAATTCACAACCAAGTTTGATTCTGGTTGTGGCTGGCCA 247 consensus_15031#3 GGCTGTGGAACACCCCTGTACAAATCCACAACCAAGTTTGATTCTGGTTGTGGCTGGCCA 318 consensus_15031#2 GGCTGTGGAACACCCCTGTACAAATCCACAACCAAGTTTGATTCTGGTTGTGGCTGGCCA 358 consensus_15031#1 GGCTGTGGAACACCCCTGTACAAATCCACAACCAAGTTTGATTCTGGTTGTGGCTGGCCA 409 ************************* ********************************** consensus_15031#0 GCATTTTTTGAGGGACTTCCTGGAGCCATAAACCGAACACCGGATCCTGATGGAAGGAGG 452 consensus_15031#4 GCATTTTTTGAGGGACTTCCTGGAGCCATAAACCGAACANCGGATCCTGATGGAAGGAGG 307 consensus_15031#3 GCATTTTTTGAGGGACTTCCTGGANCCATAAACCGAACACCGGATCCTGATGGAAGGANG 378 consensus_15031#2 GCATTTTTTGAGGGACTTCCTGGAGCCATAAACCGAACACCGGATCCTGATGGAAGGAGG 418 consensus_15031#1 GCATTTTTTGAGGGACTTTCTGGAGCCATAAACCGAACACCGGATCCTGATGGAAGGAGG 469 ****************** ***** ************** ****************** * consensus_15031#0 GTAGAAATCACGTGTGCAGCTTGCGGTGGGCATTTGGGTCACGTGTTCAAAGGAGAAGGC 512 consensus_15031#4 GTAGAAATC--------------------------------------------------- 316 consensus_15031#3 GTNGAAATCACGTGTGCAGCTTGCGGTGGGCATTTGGGTCACGTGTTCAAANGANAAAGC 438 consensus_15031#2 GTAGAAATCACGTGTGCAGCTTGCGGTGGGCATTTGGGTCACGTGTTCAAAGGAGAAGGC 478 consensus_15031#1 GTAGAAATCACGTGTGCAGCTTGCGGTGGGCATTTGGGTCACGTGTTCAAAGGAGAAGGC 529 ** ****** consensus_15031#0 TTGAAGACGCCTACTGATGAGCGTTACTTGGGGGAACAGGGTTGGGTATCAAGTTGACCT 572 consensus_15031#4 ------------------------------------------------------------ consensus_15031#3 TC-AAGAC-CCTACTGAT-AACGTCACT-GTGTGAACANTGTTTCG-ATCAANTTCACC- 492 consensus_15031#2 TTCAAGACGCCTACTGATGAGCGTCACT-GTGTGAACAGTGTTTCG-ATCAAGTTCACCC 536 consensus_15031#1 TTCAAGACGCCTACTGATGAGCGTCACT-GTGTGAACAGTGTTTCG-ATCAAGTTCACCC 587 consensus_15031#0 GCGGGCTGCTGAATGACTGTGGCAGGTAATTATAATTTGGATGCTAATTAGGTACGGGCT 632 consensus_15031#4 ------------------------------------------------------------ consensus_15031#3 -CCGGCTCCTAAATC-CTTTCCCAAGTCATTATTATT-GGAAGTGAATTCCCCANGGG-T 548 consensus_15031#2 -CGGCCTCCTAAATC-CTTTCCCAGGTCATTATTATT-GGAGGTGAATTCCCCA-GGGCT 592 consensus_15031#1 -CGGCCTCCTAAATC-CTTTCCCAGGTCATTATTATT-GGAGGTGAATTCCCCA-GGGCT 643 consensus_15031#0 TATAATGTGTTAAGTCCTTCTTGTTGTTTTATTATATGCACTGAGTCTTGTGTTGTGAAG 692 consensus_15031#4 ------------------------------------------------------------ consensus_15031#3 NAAACTNNTGGAAANCCCTNCNAATAATGAATNAAATCCCNNAAACTTCCCGGTTTG--- 605 consensus_15031#2 AAAGCTGTGGAAAGCACTACAAAATAATGAATAAAAT-CACAGAGACATATCCTGTTT-G 650 consensus_15031#1 AAAGCTGTGGAAAGCACTACAAAATAATGAATAAAAT-CACAGAGACATATCCTGTTT-G 701 consensus_15031#0 TTCATGTGTGTAACTTGGGATTCCGTATTTT-TTGTAAAACCGGTGTGTATTTTCTATTT 751 consensus_15031#4 ------------------------------------------------------------ consensus_15031#3 TCCANATATGAANTCCCCCCCNGTTAATTAA-CNGTTAAC-------------------- 644 consensus_15031#2 TCCATATATGAATTCATCTCCTGTTAATTTAGCTGTAAACTTGTAACTTAACATTGCTGG 710 consensus_15031#1 TCCATATATGAATTCATCTCCTGTTAATTTAGCTGTAAACTTGTAACTTAACATTGCTGG 761 consensus_15031#0 TCATCGTCGTCTATGACGGGCGCGCCGTTCGTCGTGCGATAAAGTGGGCCTTGGCCGTCC 811 consensus_15031#4 ------------------------------------------------------------ consensus_15031#3 ------------------------------------------------------------ consensus_15031#2 GAATGGTAAATGAATGAATAAATGAATCTGGTTCATTAGTTAAAAAAAAAAAAAAAAAGG 770 consensus_15031#1 GAATGGTAAATGAATGAATAAATGAATCTGG----------------------------- 792 consensus_15031#0 GTGTATCTCGTTATGTTCTTGGTCCGCGACGTGGAGGGGGGTGGCGCCGCTGCTCTGATT 871 consensus_15031#4 ------------------------------------------------------------ consensus_15031#3 ------------------------------------------------------------ consensus_15031#2 CCACAT------------------------------------------------------ 776 consensus_15031#1 ------------------------------------------------------------ consensus_15031#0 TGCTAGTTTTCTGCCTGGTCATCATTATTTTCCGCGGCTTTGCCCTCGCCCGCCCTTTTT 931 consensus_15031#4 ------------------------------------------------------------ consensus_15031#3 ------------------------------------------------------------ consensus_15031#2 ------------------------------------------------------------ consensus_15031#1 ------------------------------------------------------------ consensus_15031#0 GTTGTTTTTTATCTTGCGCCGGTCTAATACTTGTCGGTGCGATCGCTGTCTGGTCGGATG 991 consensus_15031#4 ------------------------------------------------------------ consensus_15031#3 ------------------------------------------------------------ consensus_15031#2 ------------------------------------------------------------ consensus_15031#1 ------------------------------------------------------------ consensus_15031#0 GGGCTTGTTGGATTCTCGCTGCTTCCTTGCCTTGATTCTTACGCTGCCCGCTGGGTGTTA 1051 consensus_15031#4 ------------------------------------------------------------ consensus_15031#3 ------------------------------------------------------------ consensus_15031#2 ------------------------------------------------------------ consensus_15031#1 ------------------------------------------------------------ consensus_15031#0 GATCAAGTGCGGATCAAAATGAGTGCAGACGCGGCGCACCCGTTG 1096 consensus_15031#4 --------------------------------------------- consensus_15031#3 --------------------------------------------- consensus_15031#2 --------------------------------------------- consensus_15031#1 --------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||