cluster # 15040

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 15040 cluster # 15040 Sequences # 19 consensus # 6

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_15040#0 length = 771 sequences # 9
consensus_15040#1 length = 518 sequences # 2
consensus_15040#2 length = 497 sequences # 4

consensus_15040#3 length = 460 sequences # 1
consensus_15040#4 length = 418 sequences # 2
consensus_15040#5 length = 321 sequences # 1

consensusID : consensus_15040#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 771
fasta sequence

                              [TATACACCATCAGTACACCATCCATCCATCCATCCATCGTCTCATCCTACCACAGATCACACACACACCAAGAACACCTAGCGGCGAGCTCTTCGCCCTCGCGGCCGTTCTTGGCTTTGTCTGGCTCGGTTTGCTTCTGCTTTTGCTCCTGCATGCGCCGCGCAATGGAGAGGAGGCCTCGTGACCTCGTCGCCGTCCTGGCTCTGTCCTGCCTCCTCCTCCTCCTCCCACTGCTCGTCTCCTCGGTGCCCATGTCGAGAAGCCTGCACTTGAGCAGCCAGCAGCAGCAACACCCGCCGTC-TCTGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGTGTGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTTACAACTGCAGATCGAATTGAGAAAATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAATCAGTGATTTTGTCGAAAAAAAAAAA]

[+] EMBL CF315563             [TATACACCATCAGTACACCATCCATCCATCCATCCATCGTCTCATCCTACCACAGATCACACACACACCAAGAACACCTAGCGGCGAGCTCTTCGCCCTCGCGGCCGTTCTTGGCTTTGTCTGGCTCGGTTTGCTTCTGCTTTTGCTCCTGCATGCGCCGCGCAATGGAGAGGAGGCCTCGTGACCTCGTCGCCGTCCTGGCTCTGTCCTGCCTCCTCCTCCTCCTCCCACTGCTCGTCTCCTCGGTGCCCATGTCGAGAAGCCTGCACTTGAGCAGCCAGCAGCAGCAACACCCGCCGTC TCTGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATT                                                                                                                                                                                                               ]
[+] EMBL CF321260             [    CACCATCAGTACACCATCCATCCATCCATCCATCGTCTCATCCTACCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CF277573             [      CCATCAGTACACCATCCATCCATCCATCCATCGTCTCATCCTACCACAGATCACACACACACCAAGAACACCTAGCGGCGAGCTCTTCGCCCTCGCGGCCGTTCTTGGCTTTGTCTGGCTCGGTTTGCTTCTGCTTTTGCTCCTGCATGCGCCGCGCAATGGAGAGGAGGCCTCGTGACCTCGTCGCCGTCCTGGCTCTGTCCTGCCTCCTCCTCCTCCTCCCACTGCTCGTCTCCTCGGTGCCCATGTCGAGAAGCCTGCACTTGAGCAGCCAGCAGCAGCAACCCCCGCCGTC TCTGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCT                                                                                                                                                                                              ]
[+] EMBL CF292806             [      CCATCAGTACACCATCCATCCATCCATCCATCGTCTCATCCTACCACAGATCACACACACACCAAGAACACCTAGCGGCGAGCTCTTCGCCCTCGCGGCCGTTCTTGGCTTTGTCTGGCTCGGTTTGCTTCTGCTTTTGCTCCTGCATGCGCCGCGCAATGGAGAGGAGGCCTCGTGACCTCGTCGCCGTCCTGGCTCTGTCCTGCCTCCTCCTCCTCCTCCCACTGCTCGTCTCCTCGGTGCCCATGTCGAGAAGCCTGCACTTGAGCAGCCAGCAGCAGCAACACCCGCCGTC TCTGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGTGTGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTTACAACTGCAG                                                                                                                                  ]
[+] EMBL CA754371             [                        TCCATCCATCCATCGTCTCATCCTACCACAGATCACACACACACCAAGAACACCTAGCGGCGAGCTCTTCGCCCTCGCGGCCGTTCTTGGCTTTGTCTGGCTCGGTTTGCTTCTGCTTTTGCTCCTGCATGCGCCGCGCAATGGAGAGGAGGCCTCGTGACCTCGTCGCCGTCCTGGCTCTGTCCTGCCTCCTCCTCCTCCTCCCACTGCTCGTCTCCTCGGTGCCCATGTCGAGAAGCCTGCACTTGAGCAGCCAGCAGCAGCAACACCCGCCGTC TCTGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGTGTGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTT                                                                                                                                            ]
[+] EMBL CF279079             [                                                       ATCACACACACACCAAGAACACCTAGCGGCGAGCTCTTCGCCCTCGCGGCCGTTCTTGGCTTTGTCTGGCTCGGTTTGCTTCTGCTTTTGCTCCTGCATGCGCCGCGCAATGGATTTTATGCCTCGTGACCTCGTCGCCTTCCTGGCTCTGTCCTGCCTCTTTTTTCTCCTCCCACTGCTCGTCTCCTCGGTGCCCATGTCGAGAAGCCTGCACTTGAGCAGCCAGCAGCAGCAACACCCGCCGTC TCTGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCC AAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGC                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AK064162             [                                                                                                       GCCGTTCTTGGCTTTGTCTGGCTCGGTTTGCTTCTGCTTTTGCTCCTGCATGCGCCGCGCAATGGAGAGGAGGCCTCGTGACCTCGTCGCCGTCCTGGCTCTGTCCTGCCTCCTCCTCCTCCTCCCACTGCTCGTCTCCTCGGTGCCCATGTCGAGAAGCCTGCACTTGAGCAGCCAGCAGCAGCAACACCCGCCGTC TCTGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGA CCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGTGTGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTTACAACTGCAGATCGAATTGAGAAAATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAATCAGTGATTTT               ]
[-] EMBL CF277572             [                                                                                                                                                                                                                                                          CATGTCGAGAAGCCTGCACTTGAGCAGCCAGCAGCAGCAACACCCGCCGTCTTTTGAACCTCTTTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGTGTGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTTACAACTGCAGATCGAATTGAGAAAATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAATCAGTGATTTTGTCGAAAAAA     ]
[-] EMBL CF325110             [                                                                                                                                                                                                                                                                                                                                                                                                                                                       GTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGTGTGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTTACAACTGCAGATCGAATTGAGAAAATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAATCAGTGATTTTGTCGAAAAAAAAAAA]




>consensus_15040#0
TATACACCATCAGTACACCATCCATCCATCCATCCATCGTCTCATCCTACCACAGATCAC
ACACACACCAAGAACACCTAGCGGCGAGCTCTTCGCCCTCGCGGCCGTTCTTGGCTTTGT
CTGGCTCGGTTTGCTTCTGCTTTTGCTCCTGCATGCGCCGCGCAATGGAGAGGAGGCCTC
GTGACCTCGTCGCCGTCCTGGCTCTGTCCTGCCTCCTCCTCCTCCTCCCACTGCTCGTCT
CCTCGGTGCCCATGTCGAGAAGCCTGCACTTGAGCAGCCAGCAGCAGCAACACCCGCCGT
CTCTGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGGCAGGA
GGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACC
GCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCT
GCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTC
ACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGTGTGATTTGGGGTG
TAATTAGTAGAGAGCAGATAGCTAGCAAGTTACAACTGCAGATCGAATTGAGAAAATATT
CAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGTAGTATA
GTAAGTAAACTAGTAAATTAATTAATCAGTGATTTTGTCGAAAAAAAAAAA

consensusID : consensus_15040#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 518
fasta sequence

                              [GCGGCGGCGGCGAGAGGGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTGGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGTGTGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTTACAACTGCAGATCGAATTGAGAAAATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAATCAGTGATTTTGTCGACATGCATATGCACATGAGCACATCACGTTGGGATGTCAATATAATACAGGATTAATTAATCGGTTAATCAGATATTGGAAGCTTAAAAA]

[-] EMBL CF279078             [GCGGCGGCGGCGAGAGGGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTGGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGTGTGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTTACAACTGCAGATCGAATTGAGAAAATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAATCAGTGATTTTGTCGACATGCATATGCACATGAGCACATCACGTTGGGATGTCAATATAATACAGGATTAATTAATCGGTTAATCAGATATTGGAAGCTTAAAAA]
[-] EMBL CF310552             [  GGCGGCGGCGAGAGGGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGTGTGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTTACATCTGCAGATCGAATTGAGAAAATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAATCAGTGATTTTGTCGACATGCATATGCACATGAGCACATCACGTTGGGATGTCAATATAATACAGGATTAATTAATCGGTTAAaaaaa                 ]




>consensus_15040#1
GCGGCGGCGGCGAGAGGGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAAC
GACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCA
TGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTT
CATATCCCTGCTAGCTATTGGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGT
CGAGAGGCTGTATGTGTGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTTA
CAACTGCAGATCGAATTGAGAAAATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCT
TGGGCCTCCTCTTTGCAGCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAATCAGTGA
TTTTGTCGACATGCATATGCACATGAGCACATCACGTTGGGATGTCAATATAATACAGGA
TTAATTAATCGGTTAATCAGATATTGGAAGCTTAAAAA

consensusID : consensus_15040#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 497
fasta sequence

                              [CATCAGTACACCATCCATCCATCCATCCATCGTCTCATCCTACCACAGATCACACACACACCAAGAACACCTAGCGGCGAGCTCTTCGCCCTCGCGGCCGTTCTTGGCTTTGTCTGGCTCGGTTTGCTTCTGCTTTTGCTCCTGCATGCGCCGCGCAATGGAGAGGAGGCCTCGTGACCTCGTCGCCGTCCTGGCTCTGTCCTGCCTCCTCCTCCTCCTCCCACTGCTCGTCTCCTCGGTGCCCATGTCGAGAAGCCTGCACTTGAGCAGCCAGCAGCAGCAACACCCGCCGTCTCTGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGG-CAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAATCAGTGATTTT]

[+] EMBL AK062926             [CATCAGTACACCATCCATCCATCCATCCATCGTCTCATCCTACCACAGATCACACACACACCAAGAACACCTAGCGGCGAGCTCTTCGCCCTCGCGGCCGTTCTTGGCTTTGTCTGGCTCGGTTTGCTTCTGCTTTTGCTCCTGCATGCGCCGCGCAATGGAGAGGAGGCCTCGTGACCTCGTCGCCGTCCTGGCTCTGTCCTGCCTCCTCCTCCTCCTCCCACTGCTCGTCTCCTCGGTGCCCATGTCGAGAAGCCTGCACTTGAGCAGCCAGCAGCAGCAACACCCGCCGTCTCTGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGG CAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAATCAGTGATTTT]
[+] EMBL AU033274             [                     TCCATCCATCGTCTCATCCTACCACAGATCACACACACACCAAGAACACCTAGCGGCGAGCTCTTCGCCCTCGCGGCCGTTCTTGGCTTTGTCTGGCTCGGTTTGCTTCTGCTTTTGCTCCTGCATGCGCCGCGCAATGGAGAGGAGGCCTCGTGACCTCGTCGCCGTCCTGGCTCTGTCCTGCCTCCTCCTCCTCCTCCCACTGCTCGTCTCCTCGGTGCCCATGTCGAGAAGCCTGCACTTGAGCAGCCAGCAGCAGCAACAACCGNCGTCTCTGAACCTCTNTCCA                                                                                                                                                                                            ]
[+] EMBL C28093               [                                  TCATCCTACCACAGATCACACACACACCAAGAACACCTAGCGGCGAGCTCTTCGCCCTCGCGGCCGTTCTTGGCTTTGTTTGGCTCGGTTTGCTTCTGCTTTTGCTCCTGCATGCGCCGCGCAATGGAGAGGAGGCCTCGTAACCTCGTCGCCGTCCTGGCTCTGTCCTGCCTCCTCCTCCTCCTCCCACTGCTCGTTTCCTCGGTGCCCATGTCGAGAAGCCTGCACTTGAGCAGCCAGCAGCAGCAACACCCGCCGTCTCTGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTTGGNAAGGAGGCCNGCGGCGAGGATTGACGTGGAGGTGAACGAC                                                                                                             ]
[+] EMBL AU068038             [                                                       ACACACCAAGAACACCTAGCGGCGAGCTCTTCGCCCTCGCGGCCGTTCTTGGCTTTGTCTGGCTCGGTTTGCTTCTGCTTTTGCTCCTGCATGCGCCGCGCAATGGAGAGGAGGCCTCGTGACCTCGTCGCCGTCCTGGCTCTGTCCTGCCTCCTCCTCCTCCTCCCACTGCTCGTCTCCTCGGTGCCCATGTCGAGAAGCCTGCACTTGAGCAGCCAGCAGCAGCAACACCCGCCGTCTCTGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGG CAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTG                                                            ]




>consensus_15040#2
CATCAGTACACCATCCATCCATCCATCCATCGTCTCATCCTACCACAGATCACACACACA
CCAAGAACACCTAGCGGCGAGCTCTTCGCCCTCGCGGCCGTTCTTGGCTTTGTCTGGCTC
GGTTTGCTTCTGCTTTTGCTCCTGCATGCGCCGCGCAATGGAGAGGAGGCCTCGTGACCT
CGTCGCCGTCCTGGCTCTGTCCTGCCTCCTCCTCCTCCTCCCACTGCTCGTCTCCTCGGT
GCCCATGTCGAGAAGCCTGCACTTGAGCAGCCAGCAGCAGCAACACCCGCCGTCTCTGAA
CCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGGCAGGAGGCCGGC
GGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGA
CCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTAGTATAGTAAGTAAACTAGTAAATT
AATTAATCAGTGATTTT

consensusID : consensus_15040#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 460
fasta sequence

                              [GGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGTGTGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTTACAACTGCAGATCGAATTGAGAAAATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAATCAGTGATTTTGTCGACATGCATATGCACATGAGCACATCACGTTGGGATGTCAATATAATACAGGATTAATTAATCGGTTAATCAAAAAAAAAAAAAAAAAAACACTGTCATGCCGTTAGG]

[-] EMBL CF315562             [GGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGTGTGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTTACAACTGCAGATCGAATTGAGAAAATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAATCAGTGATTTTGTCGACATGCATATGCACATGAGCACATCACGTTGGGATGTCAATATAATACAGGATTAATTAATCGGTTAATCAAAAAAAAAAAAAAAAAAACACTGTCATGCCGTTAGG]




>consensus_15040#3
GGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGC
TGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGC
TATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGT
GTGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTTACAACTGCAGATCGAA
TTGAGAAAATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTG
CAGCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAATCAGTGATTTTGTCGACATGCA
TATGCACATGAGCACATCACGTTGGGATGTCAATATAATACAGGATTAATTAATCGGTTA
ATCAAAAAAAAAAAAAAAAAAACACTGTCATGCCGTTAGG

consensusID : consensus_15040#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 418
fasta sequence

                              [GGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGTGTGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTTACAACTGCAGATCGAATTGAGAAAATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU068037             [GGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGTGTGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTTACAACTGCAGATCGAATTGAGAAAATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF292807             [                             GACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGTGTGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTTACAACTGCAGATCGAATTGAGAAAATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAAAAA                  ]




>consensus_15040#4
GGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAG
GACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCT
GAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCT
ATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGTG
TGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTTACAACTGCAGATCGAAT
TGAGAAAATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGC
AGCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_15040#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 321
fasta sequence

                              [TGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF323158             [TGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_15040#5
TGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGGCAGGAGGC
CGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCC
ATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCT
GCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACA
TAATTAATCCAGCGTCTAATTACATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15040#1      ------------------------------------------------------------
consensus_15040#3      ------------------------------------------------------------
consensus_15040#4      ------------------------------------------------------------
consensus_15040#5      ------------------------------------------------------------
consensus_15040#0      TATACACCATCAGTACACCATCCATCCATCCATCCATCGTCTCATCCTACCACAGATCAC 60
consensus_15040#2      ------------------------------------------------------------
                                                                                   

consensus_15040#1      ------------------------------------------------------------
consensus_15040#3      ------------------------------------------------------------
consensus_15040#4      ------------------------------------------------------------
consensus_15040#5      ------------------------------------------------------------
consensus_15040#0      ACACACACCAAGAACACCTAGCGGCGAGCTCTTCGCCCTCGCGGCCGTTCTTGGCTTTGT 120
consensus_15040#2      ------------------------------------------------------------
                                                                                   

consensus_15040#1      ------------------------------------------------------------
consensus_15040#3      ------------------------------------------------------------
consensus_15040#4      ------------------------------------------------------------
consensus_15040#5      ------------------------------------------------------------
consensus_15040#0      CTGGCTCGGTTTGCTTCTGCTTTTGCTCCTGCATGCGCCGCGCAATGGAGAGGAGGCCTC 180
consensus_15040#2      ------------------------------------------------------------
                                                                                   

consensus_15040#1      ------------------------------------------------------------
consensus_15040#3      ------------------------------------------------------------
consensus_15040#4      ------------------------------------------------------------
consensus_15040#5      ------------------------------------------------------------
consensus_15040#0      GTGACCTCGTCGCCGTCCTGGCTCTGTCCTGCCTCCTCCTCCTCCTCCCACTGCTCGTCT 240
consensus_15040#2      ------------------------------------------------------------
                                                                                   

consensus_15040#1      ------------------------------------------------------------
consensus_15040#3      ------------------------------------------------------------
consensus_15040#4      ------------------------------------------------------------
consensus_15040#5      ------------------------------------------------------------
consensus_15040#0      CCTCGGTGCCCATGTCGAGAAGCCTGCACTTGAGCAGCCAGCAGCAGCAACACCCGCCGT 300
consensus_15040#2      ------------------------------------------------------------
                                                                                   

consensus_15040#1      --------------------------------GCGGCGGCGGCGAGAGGGCTCGGCAGGA 28
consensus_15040#3      ------------------------------------------------------------
consensus_15040#4      ------------------------------------------------GGCTCGGCAGGA 12
consensus_15040#5      ---TGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGGCAGGA 57
consensus_15040#0      CTCTGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGGCAGGA 360
consensus_15040#2      ----------------------------------------CATCAGTACACCATCCATCC 20
                                                                                   

consensus_15040#1      GGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACC 88
consensus_15040#3      -----------------------------------------------GGACCCAACAACC 13
consensus_15040#4      GGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACC 72
consensus_15040#5      GGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACC 117
consensus_15040#0      GGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACC 420
consensus_15040#2      ATCCATCCATC-GTCTCATCCTACCACAGATCACACACACACCAAGAACACCTAGCGGCG 79
                                                                        *** * *  * 

consensus_15040#1      G--CCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTG 146
consensus_15040#3      G--CCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTG 71
consensus_15040#4      G--CCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTG 130
consensus_15040#5      G--CCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTG 175
consensus_15040#0      G--CCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTG 478
consensus_15040#2      AGCTCTTCGCCCTCGCGGCCGTTCTTGGCTTTGTCTGGCTCGGTTT-GCTTCTGCTTTTG 138
                           * *  ***** *    ** ** **           ** **   ***   ***  **

consensus_15040#1      CTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGC-TATTGGCAAA 205
consensus_15040#3      CTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGC-TATTAGCAAA 130
consensus_15040#4      CTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGC-TATTAGCAAA 189
consensus_15040#5      CTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGC-TATTAGCAAA 234
consensus_15040#0      CTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGC-TATTAGCAAA 537
consensus_15040#2      CTCCTGCATGCGCCGCGCAATGGAGAGGAGGCCTCGTGACCTCGTCGCCGTCCTGGCTCT 198
                       ** ****    ** *    *    *  *  *  ** *  **  *    * *  * **   

consensus_15040#1      TTCACATAATTAATCCAGCGTCTAATTACATAAGTCG--AGAGGCTGTATGTGTGATTTG 263
consensus_15040#3      TTCACATAATTAATCCAGCGTCTAATTACATAAGTCG--AGAGGCTGTATGTGTGATTTG 188
consensus_15040#4      TTCACATAATTAATCCAGCGTCTAATTACATAAGTCG--AGAGGCTGTATGTGTGATTTG 247
consensus_15040#5      TTCACATAATTAATCCAGCGTCTAATTACATAAAAAA--AAAAAAAAAAAAAAAAAAAAA 292
consensus_15040#0      TTCACATAATTAATCCAGCGTCTAATTACATAAGTCG--AGAGGCTGTATGTGTGATTTG 595
consensus_15040#2      GTCCTGCCTCCTCCTCCTCCTCCCACTGCTCGTCTCCTCGGTGCCCATGTCGAGAAGCCT 258
                        **            *  * **  * * *                          *    

consensus_15040#1      GGGTGTAATTAGTAGAGAGCAGATA-GCTAGCAAGTTACAACTGCAGATCGAATTGAGAA 322
consensus_15040#3      GGGTGTAATTAGTAGAGAGCAGATA-GCTAGCAAGTTACAACTGCAGATCGAATTGAGAA 247
consensus_15040#4      GGGTGTAATTAGTAGAGAGCAGATA-GCTAGCAAGTTACAACTGCAGATCGAATTGAGAA 306
consensus_15040#5      AAAAAAAAAAAAAAAAAAAAAAAAA-AAAA------------------------------ 321
consensus_15040#0      GGGTGTAATTAGTAGAGAGCAGATA-GCTAGCAAGTTACAACTGCAGATCGAATTGAGAA 654
consensus_15040#2      GCACTTGAGCAGCCAGCAGCAGCAACACCCGCCGTCTCTGAACCTCTCTCCAGATGAGAT 318
                              *  *      *  *   *                                   

consensus_15040#1      AATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGT 382
consensus_15040#3      AATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGT 307
consensus_15040#4      AATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGT 366
consensus_15040#5      ------------------------------------------------------------
consensus_15040#0      AATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGT 714
consensus_15040#2      GGCGG-CGGCGGCGGCGGCGAGAGGGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGG 377
                                                                                   

consensus_15040#1      AGTATAGTAAGTAAACTAGT---AAATTAATTAATCAGTGATTTTGTCGACATGCATATG 439
consensus_15040#3      AGTATAGTAAGTAAACTAGT---AAATTAATTAATCAGTGATTTTGTCGACATGCATATG 364
consensus_15040#4      AGTATAGTAAGTAAACTAGT---AAATTAATTAAAAAAAAAAAAAAAAAAAAAAA----- 418
consensus_15040#5      ------------------------------------------------------------
consensus_15040#0      AGTATAGTAAGTAAACTAGT---AAATTAATTAATCAGTGATTTTGTCGAAAAAAAAAAA 771
consensus_15040#2      AGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTG 437
                                                                                   

consensus_15040#1      CACATGAGCACATCACGTTGGGATGTCAATATAATACAGGATTAATTAATCGGTTAATCA 499
consensus_15040#3      CACATGAGCACATCACGTTGGGATGTCAATATAATACAGGATTAATTAATCGGTTAATCA 424
consensus_15040#4      ------------------------------------------------------------
consensus_15040#5      ------------------------------------------------------------
consensus_15040#0      ------------------------------------------------------------
consensus_15040#2      GGAGAGCATGAATTCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAATCAGTGATTTT 497
                                                                                   

consensus_15040#1      GATATTGGAAGCTTAAAAA----------------- 518
consensus_15040#3      AAAAAAAAAAAAAAAAAACACTGTCATGCCGTTAGG 460
consensus_15040#4      ------------------------------------
consensus_15040#5      ------------------------------------
consensus_15040#0      ------------------------------------
consensus_15040#2      ------------------------------------