These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15040#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 771 fasta sequence [TATACACCATCAGTACACCATCCATCCATCCATCCATCGTCTCATCCTACCACAGATCACACACACACCAAGAACACCTAGCGGCGAGCTCTTCGCCCTCGCGGCCGTTCTTGGCTTTGTCTGGCTCGGTTTGCTTCTGCTTTTGCTCCTGCATGCGCCGCGCAATGGAGAGGAGGCCTCGTGACCTCGTCGCCGTCCTGGCTCTGTCCTGCCTCCTCCTCCTCCTCCCACTGCTCGTCTCCTCGGTGCCCATGTCGAGAAGCCTGCACTTGAGCAGCCAGCAGCAGCAACACCCGCCGTC-TCTGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGTGTGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTTACAACTGCAGATCGAATTGAGAAAATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAATCAGTGATTTTGTCGAAAAAAAAAAA] [+] EMBL CF315563 [TATACACCATCAGTACACCATCCATCCATCCATCCATCGTCTCATCCTACCACAGATCACACACACACCAAGAACACCTAGCGGCGAGCTCTTCGCCCTCGCGGCCGTTCTTGGCTTTGTCTGGCTCGGTTTGCTTCTGCTTTTGCTCCTGCATGCGCCGCGCAATGGAGAGGAGGCCTCGTGACCTCGTCGCCGTCCTGGCTCTGTCCTGCCTCCTCCTCCTCCTCCCACTGCTCGTCTCCTCGGTGCCCATGTCGAGAAGCCTGCACTTGAGCAGCCAGCAGCAGCAACACCCGCCGTC TCTGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATT ] [+] EMBL CF321260 [ CACCATCAGTACACCATCCATCCATCCATCCATCGTCTCATCCTACCA ] [+] EMBL CF277573 [ CCATCAGTACACCATCCATCCATCCATCCATCGTCTCATCCTACCACAGATCACACACACACCAAGAACACCTAGCGGCGAGCTCTTCGCCCTCGCGGCCGTTCTTGGCTTTGTCTGGCTCGGTTTGCTTCTGCTTTTGCTCCTGCATGCGCCGCGCAATGGAGAGGAGGCCTCGTGACCTCGTCGCCGTCCTGGCTCTGTCCTGCCTCCTCCTCCTCCTCCCACTGCTCGTCTCCTCGGTGCCCATGTCGAGAAGCCTGCACTTGAGCAGCCAGCAGCAGCAACCCCCGCCGTC TCTGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCT ] [+] EMBL CF292806 [ CCATCAGTACACCATCCATCCATCCATCCATCGTCTCATCCTACCACAGATCACACACACACCAAGAACACCTAGCGGCGAGCTCTTCGCCCTCGCGGCCGTTCTTGGCTTTGTCTGGCTCGGTTTGCTTCTGCTTTTGCTCCTGCATGCGCCGCGCAATGGAGAGGAGGCCTCGTGACCTCGTCGCCGTCCTGGCTCTGTCCTGCCTCCTCCTCCTCCTCCCACTGCTCGTCTCCTCGGTGCCCATGTCGAGAAGCCTGCACTTGAGCAGCCAGCAGCAGCAACACCCGCCGTC TCTGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGTGTGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTTACAACTGCAG ] [+] EMBL CA754371 [ TCCATCCATCCATCGTCTCATCCTACCACAGATCACACACACACCAAGAACACCTAGCGGCGAGCTCTTCGCCCTCGCGGCCGTTCTTGGCTTTGTCTGGCTCGGTTTGCTTCTGCTTTTGCTCCTGCATGCGCCGCGCAATGGAGAGGAGGCCTCGTGACCTCGTCGCCGTCCTGGCTCTGTCCTGCCTCCTCCTCCTCCTCCCACTGCTCGTCTCCTCGGTGCCCATGTCGAGAAGCCTGCACTTGAGCAGCCAGCAGCAGCAACACCCGCCGTC TCTGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGTGTGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTT ] [+] EMBL CF279079 [ ATCACACACACACCAAGAACACCTAGCGGCGAGCTCTTCGCCCTCGCGGCCGTTCTTGGCTTTGTCTGGCTCGGTTTGCTTCTGCTTTTGCTCCTGCATGCGCCGCGCAATGGATTTTATGCCTCGTGACCTCGTCGCCTTCCTGGCTCTGTCCTGCCTCTTTTTTCTCCTCCCACTGCTCGTCTCCTCGGTGCCCATGTCGAGAAGCCTGCACTTGAGCAGCCAGCAGCAGCAACACCCGCCGTC TCTGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCC AAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGC ] [+] EMBL AK064162 [ GCCGTTCTTGGCTTTGTCTGGCTCGGTTTGCTTCTGCTTTTGCTCCTGCATGCGCCGCGCAATGGAGAGGAGGCCTCGTGACCTCGTCGCCGTCCTGGCTCTGTCCTGCCTCCTCCTCCTCCTCCCACTGCTCGTCTCCTCGGTGCCCATGTCGAGAAGCCTGCACTTGAGCAGCCAGCAGCAGCAACACCCGCCGTC TCTGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGA CCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGTGTGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTTACAACTGCAGATCGAATTGAGAAAATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAATCAGTGATTTT ] [-] EMBL CF277572 [ CATGTCGAGAAGCCTGCACTTGAGCAGCCAGCAGCAGCAACACCCGCCGTCTTTTGAACCTCTTTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGTGTGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTTACAACTGCAGATCGAATTGAGAAAATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAATCAGTGATTTTGTCGAAAAAA ] [-] EMBL CF325110 [ GTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGTGTGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTTACAACTGCAGATCGAATTGAGAAAATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAATCAGTGATTTTGTCGAAAAAAAAAAA] consensusID : consensus_15040#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 518 fasta sequence [GCGGCGGCGGCGAGAGGGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTGGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGTGTGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTTACAACTGCAGATCGAATTGAGAAAATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAATCAGTGATTTTGTCGACATGCATATGCACATGAGCACATCACGTTGGGATGTCAATATAATACAGGATTAATTAATCGGTTAATCAGATATTGGAAGCTTAAAAA] [-] EMBL CF279078 [GCGGCGGCGGCGAGAGGGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTGGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGTGTGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTTACAACTGCAGATCGAATTGAGAAAATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAATCAGTGATTTTGTCGACATGCATATGCACATGAGCACATCACGTTGGGATGTCAATATAATACAGGATTAATTAATCGGTTAATCAGATATTGGAAGCTTAAAAA] [-] EMBL CF310552 [ GGCGGCGGCGAGAGGGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGTGTGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTTACATCTGCAGATCGAATTGAGAAAATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAATCAGTGATTTTGTCGACATGCATATGCACATGAGCACATCACGTTGGGATGTCAATATAATACAGGATTAATTAATCGGTTAAaaaaa ] consensusID : consensus_15040#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 497 fasta sequence [CATCAGTACACCATCCATCCATCCATCCATCGTCTCATCCTACCACAGATCACACACACACCAAGAACACCTAGCGGCGAGCTCTTCGCCCTCGCGGCCGTTCTTGGCTTTGTCTGGCTCGGTTTGCTTCTGCTTTTGCTCCTGCATGCGCCGCGCAATGGAGAGGAGGCCTCGTGACCTCGTCGCCGTCCTGGCTCTGTCCTGCCTCCTCCTCCTCCTCCCACTGCTCGTCTCCTCGGTGCCCATGTCGAGAAGCCTGCACTTGAGCAGCCAGCAGCAGCAACACCCGCCGTCTCTGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGG-CAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAATCAGTGATTTT] [+] EMBL AK062926 [CATCAGTACACCATCCATCCATCCATCCATCGTCTCATCCTACCACAGATCACACACACACCAAGAACACCTAGCGGCGAGCTCTTCGCCCTCGCGGCCGTTCTTGGCTTTGTCTGGCTCGGTTTGCTTCTGCTTTTGCTCCTGCATGCGCCGCGCAATGGAGAGGAGGCCTCGTGACCTCGTCGCCGTCCTGGCTCTGTCCTGCCTCCTCCTCCTCCTCCCACTGCTCGTCTCCTCGGTGCCCATGTCGAGAAGCCTGCACTTGAGCAGCCAGCAGCAGCAACACCCGCCGTCTCTGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGG CAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAATCAGTGATTTT] [+] EMBL AU033274 [ TCCATCCATCGTCTCATCCTACCACAGATCACACACACACCAAGAACACCTAGCGGCGAGCTCTTCGCCCTCGCGGCCGTTCTTGGCTTTGTCTGGCTCGGTTTGCTTCTGCTTTTGCTCCTGCATGCGCCGCGCAATGGAGAGGAGGCCTCGTGACCTCGTCGCCGTCCTGGCTCTGTCCTGCCTCCTCCTCCTCCTCCCACTGCTCGTCTCCTCGGTGCCCATGTCGAGAAGCCTGCACTTGAGCAGCCAGCAGCAGCAACAACCGNCGTCTCTGAACCTCTNTCCA ] [+] EMBL C28093 [ TCATCCTACCACAGATCACACACACACCAAGAACACCTAGCGGCGAGCTCTTCGCCCTCGCGGCCGTTCTTGGCTTTGTTTGGCTCGGTTTGCTTCTGCTTTTGCTCCTGCATGCGCCGCGCAATGGAGAGGAGGCCTCGTAACCTCGTCGCCGTCCTGGCTCTGTCCTGCCTCCTCCTCCTCCTCCCACTGCTCGTTTCCTCGGTGCCCATGTCGAGAAGCCTGCACTTGAGCAGCCAGCAGCAGCAACACCCGCCGTCTCTGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTTGGNAAGGAGGCCNGCGGCGAGGATTGACGTGGAGGTGAACGAC ] [+] EMBL AU068038 [ ACACACCAAGAACACCTAGCGGCGAGCTCTTCGCCCTCGCGGCCGTTCTTGGCTTTGTCTGGCTCGGTTTGCTTCTGCTTTTGCTCCTGCATGCGCCGCGCAATGGAGAGGAGGCCTCGTGACCTCGTCGCCGTCCTGGCTCTGTCCTGCCTCCTCCTCCTCCTCCCACTGCTCGTCTCCTCGGTGCCCATGTCGAGAAGCCTGCACTTGAGCAGCCAGCAGCAGCAACACCCGCCGTCTCTGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGG CAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTG ] consensusID : consensus_15040#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 460 fasta sequence [GGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGTGTGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTTACAACTGCAGATCGAATTGAGAAAATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAATCAGTGATTTTGTCGACATGCATATGCACATGAGCACATCACGTTGGGATGTCAATATAATACAGGATTAATTAATCGGTTAATCAAAAAAAAAAAAAAAAAAACACTGTCATGCCGTTAGG] [-] EMBL CF315562 [GGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGTGTGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTTACAACTGCAGATCGAATTGAGAAAATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAATCAGTGATTTTGTCGACATGCATATGCACATGAGCACATCACGTTGGGATGTCAATATAATACAGGATTAATTAATCGGTTAATCAAAAAAAAAAAAAAAAAAACACTGTCATGCCGTTAGG] consensusID : consensus_15040#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 418 fasta sequence [GGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGTGTGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTTACAACTGCAGATCGAATTGAGAAAATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU068037 [GGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGTGTGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTTACAACTGCAGATCGAATTGAGAAAATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF292807 [ GACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGTGTGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTTACAACTGCAGATCGAATTGAGAAAATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAAAAA ] consensusID : consensus_15040#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 321 fasta sequence [TGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF323158 [TGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15040#1 ------------------------------------------------------------ consensus_15040#3 ------------------------------------------------------------ consensus_15040#4 ------------------------------------------------------------ consensus_15040#5 ------------------------------------------------------------ consensus_15040#0 TATACACCATCAGTACACCATCCATCCATCCATCCATCGTCTCATCCTACCACAGATCAC 60 consensus_15040#2 ------------------------------------------------------------ consensus_15040#1 ------------------------------------------------------------ consensus_15040#3 ------------------------------------------------------------ consensus_15040#4 ------------------------------------------------------------ consensus_15040#5 ------------------------------------------------------------ consensus_15040#0 ACACACACCAAGAACACCTAGCGGCGAGCTCTTCGCCCTCGCGGCCGTTCTTGGCTTTGT 120 consensus_15040#2 ------------------------------------------------------------ consensus_15040#1 ------------------------------------------------------------ consensus_15040#3 ------------------------------------------------------------ consensus_15040#4 ------------------------------------------------------------ consensus_15040#5 ------------------------------------------------------------ consensus_15040#0 CTGGCTCGGTTTGCTTCTGCTTTTGCTCCTGCATGCGCCGCGCAATGGAGAGGAGGCCTC 180 consensus_15040#2 ------------------------------------------------------------ consensus_15040#1 ------------------------------------------------------------ consensus_15040#3 ------------------------------------------------------------ consensus_15040#4 ------------------------------------------------------------ consensus_15040#5 ------------------------------------------------------------ consensus_15040#0 GTGACCTCGTCGCCGTCCTGGCTCTGTCCTGCCTCCTCCTCCTCCTCCCACTGCTCGTCT 240 consensus_15040#2 ------------------------------------------------------------ consensus_15040#1 ------------------------------------------------------------ consensus_15040#3 ------------------------------------------------------------ consensus_15040#4 ------------------------------------------------------------ consensus_15040#5 ------------------------------------------------------------ consensus_15040#0 CCTCGGTGCCCATGTCGAGAAGCCTGCACTTGAGCAGCCAGCAGCAGCAACACCCGCCGT 300 consensus_15040#2 ------------------------------------------------------------ consensus_15040#1 --------------------------------GCGGCGGCGGCGAGAGGGCTCGGCAGGA 28 consensus_15040#3 ------------------------------------------------------------ consensus_15040#4 ------------------------------------------------GGCTCGGCAGGA 12 consensus_15040#5 ---TGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGGCAGGA 57 consensus_15040#0 CTCTGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGGCAGGA 360 consensus_15040#2 ----------------------------------------CATCAGTACACCATCCATCC 20 consensus_15040#1 GGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACC 88 consensus_15040#3 -----------------------------------------------GGACCCAACAACC 13 consensus_15040#4 GGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACC 72 consensus_15040#5 GGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACC 117 consensus_15040#0 GGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACC 420 consensus_15040#2 ATCCATCCATC-GTCTCATCCTACCACAGATCACACACACACCAAGAACACCTAGCGGCG 79 *** * * * consensus_15040#1 G--CCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTG 146 consensus_15040#3 G--CCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTG 71 consensus_15040#4 G--CCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTG 130 consensus_15040#5 G--CCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTG 175 consensus_15040#0 G--CCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTG 478 consensus_15040#2 AGCTCTTCGCCCTCGCGGCCGTTCTTGGCTTTGTCTGGCTCGGTTT-GCTTCTGCTTTTG 138 * * ***** * ** ** ** ** ** *** *** ** consensus_15040#1 CTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGC-TATTGGCAAA 205 consensus_15040#3 CTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGC-TATTAGCAAA 130 consensus_15040#4 CTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGC-TATTAGCAAA 189 consensus_15040#5 CTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGC-TATTAGCAAA 234 consensus_15040#0 CTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGC-TATTAGCAAA 537 consensus_15040#2 CTCCTGCATGCGCCGCGCAATGGAGAGGAGGCCTCGTGACCTCGTCGCCGTCCTGGCTCT 198 ** **** ** * * * * * ** * ** * * * * ** consensus_15040#1 TTCACATAATTAATCCAGCGTCTAATTACATAAGTCG--AGAGGCTGTATGTGTGATTTG 263 consensus_15040#3 TTCACATAATTAATCCAGCGTCTAATTACATAAGTCG--AGAGGCTGTATGTGTGATTTG 188 consensus_15040#4 TTCACATAATTAATCCAGCGTCTAATTACATAAGTCG--AGAGGCTGTATGTGTGATTTG 247 consensus_15040#5 TTCACATAATTAATCCAGCGTCTAATTACATAAAAAA--AAAAAAAAAAAAAAAAAAAAA 292 consensus_15040#0 TTCACATAATTAATCCAGCGTCTAATTACATAAGTCG--AGAGGCTGTATGTGTGATTTG 595 consensus_15040#2 GTCCTGCCTCCTCCTCCTCCTCCCACTGCTCGTCTCCTCGGTGCCCATGTCGAGAAGCCT 258 ** * * ** * * * * consensus_15040#1 GGGTGTAATTAGTAGAGAGCAGATA-GCTAGCAAGTTACAACTGCAGATCGAATTGAGAA 322 consensus_15040#3 GGGTGTAATTAGTAGAGAGCAGATA-GCTAGCAAGTTACAACTGCAGATCGAATTGAGAA 247 consensus_15040#4 GGGTGTAATTAGTAGAGAGCAGATA-GCTAGCAAGTTACAACTGCAGATCGAATTGAGAA 306 consensus_15040#5 AAAAAAAAAAAAAAAAAAAAAAAAA-AAAA------------------------------ 321 consensus_15040#0 GGGTGTAATTAGTAGAGAGCAGATA-GCTAGCAAGTTACAACTGCAGATCGAATTGAGAA 654 consensus_15040#2 GCACTTGAGCAGCCAGCAGCAGCAACACCCGCCGTCTCTGAACCTCTCTCCAGATGAGAT 318 * * * * * consensus_15040#1 AATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGT 382 consensus_15040#3 AATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGT 307 consensus_15040#4 AATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGT 366 consensus_15040#5 ------------------------------------------------------------ consensus_15040#0 AATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGT 714 consensus_15040#2 GGCGG-CGGCGGCGGCGGCGAGAGGGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGG 377 consensus_15040#1 AGTATAGTAAGTAAACTAGT---AAATTAATTAATCAGTGATTTTGTCGACATGCATATG 439 consensus_15040#3 AGTATAGTAAGTAAACTAGT---AAATTAATTAATCAGTGATTTTGTCGACATGCATATG 364 consensus_15040#4 AGTATAGTAAGTAAACTAGT---AAATTAATTAAAAAAAAAAAAAAAAAAAAAAA----- 418 consensus_15040#5 ------------------------------------------------------------ consensus_15040#0 AGTATAGTAAGTAAACTAGT---AAATTAATTAATCAGTGATTTTGTCGAAAAAAAAAAA 771 consensus_15040#2 AGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTG 437 consensus_15040#1 CACATGAGCACATCACGTTGGGATGTCAATATAATACAGGATTAATTAATCGGTTAATCA 499 consensus_15040#3 CACATGAGCACATCACGTTGGGATGTCAATATAATACAGGATTAATTAATCGGTTAATCA 424 consensus_15040#4 ------------------------------------------------------------ consensus_15040#5 ------------------------------------------------------------ consensus_15040#0 ------------------------------------------------------------ consensus_15040#2 GGAGAGCATGAATTCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAATCAGTGATTTT 497 consensus_15040#1 GATATTGGAAGCTTAAAAA----------------- 518 consensus_15040#3 AAAAAAAAAAAAAAAAAACACTGTCATGCCGTTAGG 460 consensus_15040#4 ------------------------------------ consensus_15040#5 ------------------------------------ consensus_15040#0 ------------------------------------ consensus_15040#2 ------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||