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Oryza sativa
cluster # 15040 cluster # 15040       Sequences # 19       consensus # 6


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_15040#0 length = 771 sequences # 9  
consensus_15040#1 length = 518 sequences # 2  
consensus_15040#2 length = 497 sequences # 4  
consensus_15040#3 length = 460 sequences # 1  
consensus_15040#4 length = 418 sequences # 2  
consensus_15040#5 length = 321 sequences # 1  

consensusID : consensus_15040#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 771
fasta sequence
                              [TATACACCATCAGTACACCATCCATCCATCCATCCATCGTCTCATCCTACCACAGATCACACACACACCAAGAACACCTAGCGGCGAGCTCTTCGCCCTCGCGGCCGTTCTTGGCTTTGTCTGGCTCGGTTTGCTTCTGCTTTTGCTCCTGCATGCGCCGCGCAATGGAGAGGAGGCCTCGTGACCTCGTCGCCGTCCTGGCTCTGTCCTGCCTCCTCCTCCTCCTCCCACTGCTCGTCTCCTCGGTGCCCATGTCGAGAAGCCTGCACTTGAGCAGCCAGCAGCAGCAACACCCGCCGTC-TCTGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGTGTGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTTACAACTGCAGATCGAATTGAGAAAATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAATCAGTGATTTTGTCGAAAAAAAAAAA]

[+] EMBL CF315563             [TATACACCATCAGTACACCATCCATCCATCCATCCATCGTCTCATCCTACCACAGATCACACACACACCAAGAACACCTAGCGGCGAGCTCTTCGCCCTCGCGGCCGTTCTTGGCTTTGTCTGGCTCGGTTTGCTTCTGCTTTTGCTCCTGCATGCGCCGCGCAATGGAGAGGAGGCCTCGTGACCTCGTCGCCGTCCTGGCTCTGTCCTGCCTCCTCCTCCTCCTCCCACTGCTCGTCTCCTCGGTGCCCATGTCGAGAAGCCTGCACTTGAGCAGCCAGCAGCAGCAACACCCGCCGTC TCTGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATT                                                                                                                                                                                                               ]
[+] EMBL CF321260             [    CACCATCAGTACACCATCCATCCATCCATCCATCGTCTCATCCTACCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CF277573             [      CCATCAGTACACCATCCATCCATCCATCCATCGTCTCATCCTACCACAGATCACACACACACCAAGAACACCTAGCGGCGAGCTCTTCGCCCTCGCGGCCGTTCTTGGCTTTGTCTGGCTCGGTTTGCTTCTGCTTTTGCTCCTGCATGCGCCGCGCAATGGAGAGGAGGCCTCGTGACCTCGTCGCCGTCCTGGCTCTGTCCTGCCTCCTCCTCCTCCTCCCACTGCTCGTCTCCTCGGTGCCCATGTCGAGAAGCCTGCACTTGAGCAGCCAGCAGCAGCAACCCCCGCCGTC TCTGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCT                                                                                                                                                                                              ]
[+] EMBL CF292806             [      CCATCAGTACACCATCCATCCATCCATCCATCGTCTCATCCTACCACAGATCACACACACACCAAGAACACCTAGCGGCGAGCTCTTCGCCCTCGCGGCCGTTCTTGGCTTTGTCTGGCTCGGTTTGCTTCTGCTTTTGCTCCTGCATGCGCCGCGCAATGGAGAGGAGGCCTCGTGACCTCGTCGCCGTCCTGGCTCTGTCCTGCCTCCTCCTCCTCCTCCCACTGCTCGTCTCCTCGGTGCCCATGTCGAGAAGCCTGCACTTGAGCAGCCAGCAGCAGCAACACCCGCCGTC TCTGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGTGTGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTTACAACTGCAG                                                                                                                                  ]
[+] EMBL CA754371             [                        TCCATCCATCCATCGTCTCATCCTACCACAGATCACACACACACCAAGAACACCTAGCGGCGAGCTCTTCGCCCTCGCGGCCGTTCTTGGCTTTGTCTGGCTCGGTTTGCTTCTGCTTTTGCTCCTGCATGCGCCGCGCAATGGAGAGGAGGCCTCGTGACCTCGTCGCCGTCCTGGCTCTGTCCTGCCTCCTCCTCCTCCTCCCACTGCTCGTCTCCTCGGTGCCCATGTCGAGAAGCCTGCACTTGAGCAGCCAGCAGCAGCAACACCCGCCGTC TCTGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGTGTGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTT                                                                                                                                            ]
[+] EMBL CF279079             [                                                       ATCACACACACACCAAGAACACCTAGCGGCGAGCTCTTCGCCCTCGCGGCCGTTCTTGGCTTTGTCTGGCTCGGTTTGCTTCTGCTTTTGCTCCTGCATGCGCCGCGCAATGGATTTTATGCCTCGTGACCTCGTCGCCTTCCTGGCTCTGTCCTGCCTCTTTTTTCTCCTCCCACTGCTCGTCTCCTCGGTGCCCATGTCGAGAAGCCTGCACTTGAGCAGCCAGCAGCAGCAACACCCGCCGTC TCTGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCC AAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGC                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AK064162             [                                                                                                       GCCGTTCTTGGCTTTGTCTGGCTCGGTTTGCTTCTGCTTTTGCTCCTGCATGCGCCGCGCAATGGAGAGGAGGCCTCGTGACCTCGTCGCCGTCCTGGCTCTGTCCTGCCTCCTCCTCCTCCTCCCACTGCTCGTCTCCTCGGTGCCCATGTCGAGAAGCCTGCACTTGAGCAGCCAGCAGCAGCAACACCCGCCGTC TCTGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGA CCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGTGTGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTTACAACTGCAGATCGAATTGAGAAAATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAATCAGTGATTTT               ]
[-] EMBL CF277572             [                                                                                                                                                                                                                                                          CATGTCGAGAAGCCTGCACTTGAGCAGCCAGCAGCAGCAACACCCGCCGTCTTTTGAACCTCTTTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGTGTGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTTACAACTGCAGATCGAATTGAGAAAATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAATCAGTGATTTTGTCGAAAAAA     ]
[-] EMBL CF325110             [                                                                                                                                                                                                                                                                                                                                                                                                                                                       GTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGTGTGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTTACAACTGCAGATCGAATTGAGAAAATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAATCAGTGATTTTGTCGAAAAAAAAAAA]


>consensus_15040#0 TATACACCATCAGTACACCATCCATCCATCCATCCATCGTCTCATCCTACCACAGATCAC ACACACACCAAGAACACCTAGCGGCGAGCTCTTCGCCCTCGCGGCCGTTCTTGGCTTTGT CTGGCTCGGTTTGCTTCTGCTTTTGCTCCTGCATGCGCCGCGCAATGGAGAGGAGGCCTC GTGACCTCGTCGCCGTCCTGGCTCTGTCCTGCCTCCTCCTCCTCCTCCCACTGCTCGTCT CCTCGGTGCCCATGTCGAGAAGCCTGCACTTGAGCAGCCAGCAGCAGCAACACCCGCCGT CTCTGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGGCAGGA GGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACC GCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCT GCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTC ACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGTGTGATTTGGGGTG TAATTAGTAGAGAGCAGATAGCTAGCAAGTTACAACTGCAGATCGAATTGAGAAAATATT CAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGTAGTATA GTAAGTAAACTAGTAAATTAATTAATCAGTGATTTTGTCGAAAAAAAAAAA



consensusID : consensus_15040#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 518
fasta sequence
                              [GCGGCGGCGGCGAGAGGGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTGGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGTGTGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTTACAACTGCAGATCGAATTGAGAAAATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAATCAGTGATTTTGTCGACATGCATATGCACATGAGCACATCACGTTGGGATGTCAATATAATACAGGATTAATTAATCGGTTAATCAGATATTGGAAGCTTAAAAA]

[-] EMBL CF279078             [GCGGCGGCGGCGAGAGGGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTGGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGTGTGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTTACAACTGCAGATCGAATTGAGAAAATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAATCAGTGATTTTGTCGACATGCATATGCACATGAGCACATCACGTTGGGATGTCAATATAATACAGGATTAATTAATCGGTTAATCAGATATTGGAAGCTTAAAAA]
[-] EMBL CF310552             [  GGCGGCGGCGAGAGGGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGTGTGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTTACATCTGCAGATCGAATTGAGAAAATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAATCAGTGATTTTGTCGACATGCATATGCACATGAGCACATCACGTTGGGATGTCAATATAATACAGGATTAATTAATCGGTTAAaaaaa                 ]


>consensus_15040#1 GCGGCGGCGGCGAGAGGGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAAC GACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCA TGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTT CATATCCCTGCTAGCTATTGGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGT CGAGAGGCTGTATGTGTGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTTA CAACTGCAGATCGAATTGAGAAAATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCT TGGGCCTCCTCTTTGCAGCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAATCAGTGA TTTTGTCGACATGCATATGCACATGAGCACATCACGTTGGGATGTCAATATAATACAGGA TTAATTAATCGGTTAATCAGATATTGGAAGCTTAAAAA



consensusID : consensus_15040#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 497
fasta sequence
                              [CATCAGTACACCATCCATCCATCCATCCATCGTCTCATCCTACCACAGATCACACACACACCAAGAACACCTAGCGGCGAGCTCTTCGCCCTCGCGGCCGTTCTTGGCTTTGTCTGGCTCGGTTTGCTTCTGCTTTTGCTCCTGCATGCGCCGCGCAATGGAGAGGAGGCCTCGTGACCTCGTCGCCGTCCTGGCTCTGTCCTGCCTCCTCCTCCTCCTCCCACTGCTCGTCTCCTCGGTGCCCATGTCGAGAAGCCTGCACTTGAGCAGCCAGCAGCAGCAACACCCGCCGTCTCTGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGG-CAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAATCAGTGATTTT]

[+] EMBL AK062926             [CATCAGTACACCATCCATCCATCCATCCATCGTCTCATCCTACCACAGATCACACACACACCAAGAACACCTAGCGGCGAGCTCTTCGCCCTCGCGGCCGTTCTTGGCTTTGTCTGGCTCGGTTTGCTTCTGCTTTTGCTCCTGCATGCGCCGCGCAATGGAGAGGAGGCCTCGTGACCTCGTCGCCGTCCTGGCTCTGTCCTGCCTCCTCCTCCTCCTCCCACTGCTCGTCTCCTCGGTGCCCATGTCGAGAAGCCTGCACTTGAGCAGCCAGCAGCAGCAACACCCGCCGTCTCTGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGG CAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAATCAGTGATTTT]
[+] EMBL AU033274             [                     TCCATCCATCGTCTCATCCTACCACAGATCACACACACACCAAGAACACCTAGCGGCGAGCTCTTCGCCCTCGCGGCCGTTCTTGGCTTTGTCTGGCTCGGTTTGCTTCTGCTTTTGCTCCTGCATGCGCCGCGCAATGGAGAGGAGGCCTCGTGACCTCGTCGCCGTCCTGGCTCTGTCCTGCCTCCTCCTCCTCCTCCCACTGCTCGTCTCCTCGGTGCCCATGTCGAGAAGCCTGCACTTGAGCAGCCAGCAGCAGCAACAACCGNCGTCTCTGAACCTCTNTCCA                                                                                                                                                                                            ]
[+] EMBL C28093               [                                  TCATCCTACCACAGATCACACACACACCAAGAACACCTAGCGGCGAGCTCTTCGCCCTCGCGGCCGTTCTTGGCTTTGTTTGGCTCGGTTTGCTTCTGCTTTTGCTCCTGCATGCGCCGCGCAATGGAGAGGAGGCCTCGTAACCTCGTCGCCGTCCTGGCTCTGTCCTGCCTCCTCCTCCTCCTCCCACTGCTCGTTTCCTCGGTGCCCATGTCGAGAAGCCTGCACTTGAGCAGCCAGCAGCAGCAACACCCGCCGTCTCTGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTTGGNAAGGAGGCCNGCGGCGAGGATTGACGTGGAGGTGAACGAC                                                                                                             ]
[+] EMBL AU068038             [                                                       ACACACCAAGAACACCTAGCGGCGAGCTCTTCGCCCTCGCGGCCGTTCTTGGCTTTGTCTGGCTCGGTTTGCTTCTGCTTTTGCTCCTGCATGCGCCGCGCAATGGAGAGGAGGCCTCGTGACCTCGTCGCCGTCCTGGCTCTGTCCTGCCTCCTCCTCCTCCTCCCACTGCTCGTCTCCTCGGTGCCCATGTCGAGAAGCCTGCACTTGAGCAGCCAGCAGCAGCAACACCCGCCGTCTCTGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGG CAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTG                                                            ]


>consensus_15040#2 CATCAGTACACCATCCATCCATCCATCCATCGTCTCATCCTACCACAGATCACACACACA CCAAGAACACCTAGCGGCGAGCTCTTCGCCCTCGCGGCCGTTCTTGGCTTTGTCTGGCTC GGTTTGCTTCTGCTTTTGCTCCTGCATGCGCCGCGCAATGGAGAGGAGGCCTCGTGACCT CGTCGCCGTCCTGGCTCTGTCCTGCCTCCTCCTCCTCCTCCCACTGCTCGTCTCCTCGGT GCCCATGTCGAGAAGCCTGCACTTGAGCAGCCAGCAGCAGCAACACCCGCCGTCTCTGAA CCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGGCAGGAGGCCGGC GGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGA CCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTAGTATAGTAAGTAAACTAGTAAATT AATTAATCAGTGATTTT



consensusID : consensus_15040#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 460
fasta sequence
                              [GGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGTGTGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTTACAACTGCAGATCGAATTGAGAAAATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAATCAGTGATTTTGTCGACATGCATATGCACATGAGCACATCACGTTGGGATGTCAATATAATACAGGATTAATTAATCGGTTAATCAAAAAAAAAAAAAAAAAAACACTGTCATGCCGTTAGG]

[-] EMBL CF315562             [GGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGTGTGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTTACAACTGCAGATCGAATTGAGAAAATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAATCAGTGATTTTGTCGACATGCATATGCACATGAGCACATCACGTTGGGATGTCAATATAATACAGGATTAATTAATCGGTTAATCAAAAAAAAAAAAAAAAAAACACTGTCATGCCGTTAGG]


>consensus_15040#3 GGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGC TGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGC TATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGT GTGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTTACAACTGCAGATCGAA TTGAGAAAATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTG CAGCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAATCAGTGATTTTGTCGACATGCA TATGCACATGAGCACATCACGTTGGGATGTCAATATAATACAGGATTAATTAATCGGTTA ATCAAAAAAAAAAAAAAAAAAACACTGTCATGCCGTTAGG



consensusID : consensus_15040#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 418
fasta sequence
                              [GGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGTGTGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTTACAACTGCAGATCGAATTGAGAAAATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU068037             [GGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGTGTGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTTACAACTGCAGATCGAATTGAGAAAATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF292807             [                             GACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGTGTGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTTACAACTGCAGATCGAATTGAGAAAATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAAAAA                  ]


>consensus_15040#4 GGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAG GACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCT GAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCT ATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAGTCGAGAGGCTGTATGTG TGATTTGGGGTGTAATTAGTAGAGAGCAGATAGCTAGCAAGTTACAACTGCAGATCGAAT TGAGAAAATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGC AGCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_15040#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 321
fasta sequence
                              [TGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF323158             [TGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACATAATTAATCCAGCGTCTAATTACATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_15040#5 TGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGGCAGGAGGC CGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCC ATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTGCTGCT GCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGCTATTAGCAAATTCACA TAATTAATCCAGCGTCTAATTACATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15040#1      ------------------------------------------------------------
consensus_15040#3      ------------------------------------------------------------
consensus_15040#4      ------------------------------------------------------------
consensus_15040#5      ------------------------------------------------------------
consensus_15040#0      TATACACCATCAGTACACCATCCATCCATCCATCCATCGTCTCATCCTACCACAGATCAC 60
consensus_15040#2      ------------------------------------------------------------
                                                                                   

consensus_15040#1      ------------------------------------------------------------
consensus_15040#3      ------------------------------------------------------------
consensus_15040#4      ------------------------------------------------------------
consensus_15040#5      ------------------------------------------------------------
consensus_15040#0      ACACACACCAAGAACACCTAGCGGCGAGCTCTTCGCCCTCGCGGCCGTTCTTGGCTTTGT 120
consensus_15040#2      ------------------------------------------------------------
                                                                                   

consensus_15040#1      ------------------------------------------------------------
consensus_15040#3      ------------------------------------------------------------
consensus_15040#4      ------------------------------------------------------------
consensus_15040#5      ------------------------------------------------------------
consensus_15040#0      CTGGCTCGGTTTGCTTCTGCTTTTGCTCCTGCATGCGCCGCGCAATGGAGAGGAGGCCTC 180
consensus_15040#2      ------------------------------------------------------------
                                                                                   

consensus_15040#1      ------------------------------------------------------------
consensus_15040#3      ------------------------------------------------------------
consensus_15040#4      ------------------------------------------------------------
consensus_15040#5      ------------------------------------------------------------
consensus_15040#0      GTGACCTCGTCGCCGTCCTGGCTCTGTCCTGCCTCCTCCTCCTCCTCCCACTGCTCGTCT 240
consensus_15040#2      ------------------------------------------------------------
                                                                                   

consensus_15040#1      ------------------------------------------------------------
consensus_15040#3      ------------------------------------------------------------
consensus_15040#4      ------------------------------------------------------------
consensus_15040#5      ------------------------------------------------------------
consensus_15040#0      CCTCGGTGCCCATGTCGAGAAGCCTGCACTTGAGCAGCCAGCAGCAGCAACACCCGCCGT 300
consensus_15040#2      ------------------------------------------------------------
                                                                                   

consensus_15040#1      --------------------------------GCGGCGGCGGCGAGAGGGCTCGGCAGGA 28
consensus_15040#3      ------------------------------------------------------------
consensus_15040#4      ------------------------------------------------GGCTCGGCAGGA 12
consensus_15040#5      ---TGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGGCAGGA 57
consensus_15040#0      CTCTGAACCTCTCTCCAGATGAGATGGCGGCGGCGGCGGCGGCGAGAGGGCTCGGCAGGA 360
consensus_15040#2      ----------------------------------------CATCAGTACACCATCCATCC 20
                                                                                   

consensus_15040#1      GGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACC 88
consensus_15040#3      -----------------------------------------------GGACCCAACAACC 13
consensus_15040#4      GGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACC 72
consensus_15040#5      GGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACC 117
consensus_15040#0      GGCCGGCGGCGAGGATGGACGTGGAGGTGAACGACTACCCCGGGTCAGGACCCAACAACC 420
consensus_15040#2      ATCCATCCATC-GTCTCATCCTACCACAGATCACACACACACCAAGAACACCTAGCGGCG 79
                                                                        *** * *  * 

consensus_15040#1      G--CCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTG 146
consensus_15040#3      G--CCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTG 71
consensus_15040#4      G--CCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTG 130
consensus_15040#5      G--CCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTG 175
consensus_15040#0      G--CCATGACCCTCCCAAAGGTCCTGGGAGAGCATGAATTCAGTCAAGCTGAAGCTGCTG 478
consensus_15040#2      AGCTCTTCGCCCTCGCGGCCGTTCTTGGCTTTGTCTGGCTCGGTTT-GCTTCTGCTTTTG 138
                           * *  ***** *    ** ** **           ** **   ***   ***  **

consensus_15040#1      CTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGC-TATTGGCAAA 205
consensus_15040#3      CTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGC-TATTAGCAAA 130
consensus_15040#4      CTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGC-TATTAGCAAA 189
consensus_15040#5      CTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGC-TATTAGCAAA 234
consensus_15040#0      CTGCTGCTGCTGCTGGAACAGCTTGTAGTAGTTTCATATCCCTGCTAGC-TATTAGCAAA 537
consensus_15040#2      CTCCTGCATGCGCCGCGCAATGGAGAGGAGGCCTCGTGACCTCGTCGCCGTCCTGGCTCT 198
                       ** ****    ** *    *    *  *  *  ** *  **  *    * *  * **   

consensus_15040#1      TTCACATAATTAATCCAGCGTCTAATTACATAAGTCG--AGAGGCTGTATGTGTGATTTG 263
consensus_15040#3      TTCACATAATTAATCCAGCGTCTAATTACATAAGTCG--AGAGGCTGTATGTGTGATTTG 188
consensus_15040#4      TTCACATAATTAATCCAGCGTCTAATTACATAAGTCG--AGAGGCTGTATGTGTGATTTG 247
consensus_15040#5      TTCACATAATTAATCCAGCGTCTAATTACATAAAAAA--AAAAAAAAAAAAAAAAAAAAA 292
consensus_15040#0      TTCACATAATTAATCCAGCGTCTAATTACATAAGTCG--AGAGGCTGTATGTGTGATTTG 595
consensus_15040#2      GTCCTGCCTCCTCCTCCTCCTCCCACTGCTCGTCTCCTCGGTGCCCATGTCGAGAAGCCT 258
                        **            *  * **  * * *                          *    

consensus_15040#1      GGGTGTAATTAGTAGAGAGCAGATA-GCTAGCAAGTTACAACTGCAGATCGAATTGAGAA 322
consensus_15040#3      GGGTGTAATTAGTAGAGAGCAGATA-GCTAGCAAGTTACAACTGCAGATCGAATTGAGAA 247
consensus_15040#4      GGGTGTAATTAGTAGAGAGCAGATA-GCTAGCAAGTTACAACTGCAGATCGAATTGAGAA 306
consensus_15040#5      AAAAAAAAAAAAAAAAAAAAAAAAA-AAAA------------------------------ 321
consensus_15040#0      GGGTGTAATTAGTAGAGAGCAGATA-GCTAGCAAGTTACAACTGCAGATCGAATTGAGAA 654
consensus_15040#2      GCACTTGAGCAGCCAGCAGCAGCAACACCCGCCGTCTCTGAACCTCTCTCCAGATGAGAT 318
                              *  *      *  *   *                                   

consensus_15040#1      AATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGT 382
consensus_15040#3      AATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGT 307
consensus_15040#4      AATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGT 366
consensus_15040#5      ------------------------------------------------------------
consensus_15040#0      AATATTCAGGGATGAAGACTGTAAAGCTTTTGCTAGCTTGGGCCTCCTCTTTGCAGCAGT 714
consensus_15040#2      GGCGG-CGGCGGCGGCGGCGAGAGGGCTCGGCAGGAGGCCGGCGGCGAGGATGGACGTGG 377
                                                                                   

consensus_15040#1      AGTATAGTAAGTAAACTAGT---AAATTAATTAATCAGTGATTTTGTCGACATGCATATG 439
consensus_15040#3      AGTATAGTAAGTAAACTAGT---AAATTAATTAATCAGTGATTTTGTCGACATGCATATG 364
consensus_15040#4      AGTATAGTAAGTAAACTAGT---AAATTAATTAAAAAAAAAAAAAAAAAAAAAAA----- 418
consensus_15040#5      ------------------------------------------------------------
consensus_15040#0      AGTATAGTAAGTAAACTAGT---AAATTAATTAATCAGTGATTTTGTCGAAAAAAAAAAA 771
consensus_15040#2      AGGTGAACGACTACCCCGGGTCAGGACCCAACAACCGCCATGACCCTCCCAAAGGTCCTG 437
                                                                                   

consensus_15040#1      CACATGAGCACATCACGTTGGGATGTCAATATAATACAGGATTAATTAATCGGTTAATCA 499
consensus_15040#3      CACATGAGCACATCACGTTGGGATGTCAATATAATACAGGATTAATTAATCGGTTAATCA 424
consensus_15040#4      ------------------------------------------------------------
consensus_15040#5      ------------------------------------------------------------
consensus_15040#0      ------------------------------------------------------------
consensus_15040#2      GGAGAGCATGAATTCAGTAGTATAGTAAGTAAACTAGTAAATTAATTAATCAGTGATTTT 497
                                                                                   

consensus_15040#1      GATATTGGAAGCTTAAAAA----------------- 518
consensus_15040#3      AAAAAAAAAAAAAAAAAACACTGTCATGCCGTTAGG 460
consensus_15040#4      ------------------------------------
consensus_15040#5      ------------------------------------
consensus_15040#0      ------------------------------------
consensus_15040#2      ------------------------------------
                                                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)