These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15073#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1262 fasta sequence [AAAGGTTTATCGATCCCAAGGGGTACAGATCCATAATAGACATATAGAGATTATTATACGCCAAGTAACATCAAAAGTGCGGGTTTCCGAAGATGGAATGTCTAATGTTTTTTTACCTGGGGAATTAATTGGACTATTGCGAGCAGAG--CGAG-C-AGGGCGGGCTTTGGATGAATCGATCTATTATCGGGCAATCTTA-TTGGGAATAACA-AGGGTTTCCCTGAATACCCA-AAGTTTCATATCTGAAGCA-AGTTTTC-AAGAAACTGCTCGAG-TTTTAG-CAAAAGCTGCCTTACGAGGTCGTATTGATTGGTTGAAAGGCCTGAAAGAAAACGTAGTTCTGGGGGGGATTATACCTGTTGGTACCGGATTCCAAAAATTTGTGCACCGTTACCCACAAAACAAGAACCTTTATTTCGAAATT-CAAAAAAAAAAACTATTTGCGTCGGAAATGAGAGATATTTTGTTTCT-CC-ATAC-AGAATTAGTTTCTTCTGATTCTGACGTAACAAACAATTTCTATGAGACATCAGAATCACCATTTACCCCATTTATATGATTTAAGGATACATAAAGCAGATTTTTTACTTTAAACTAGATTTTTGACCTTAGAACGCTAAGAGGTTAGATTTTCTATTTTTATTTTAATTTAAAAAGAAGTTTAGTTAATTCATTAAGGTTATGCTTATACCATGTAGAAGGTTCCATCGGAACAATTATTATTTATTTCAAGCTATTTCGGCTCTTTCTTAATCTTCGAAAAGAAAGAAATTTCGTAATGGAAAGGTAGGATGAAAAAAAAAAAAAAATCAAAAGGAAGTGTGGAAAAAATGACAAGAAGATATTGGAACATCAATTTGAAAGAGATGATAGAAGCGGGAGTTCATTTTGGTCATGGTATTAAGAAATGGAATCCTAAAATGGCCCCTTACATCTCGGCAAAGCGTAAAGGTACTCATATTACAAATCTCGCTAGAACCACCCGTTTTTTATCAGAAGCTTGTGATTTAGTTTTTGATGCAGCAAGTCAGGGAAAAAGCTTCTTAATTGTTGGTACCAAAAAAAGAGCAGCGGATTTAGTAGCATCAGCTGCAATAAGGGCTCGTTGTCATTATGTTAATAAAAAGTGGTTCAGTGGTATGTTAACGAATTGGTCGATTACTAAAACTAGACTTTCTCAATTTAGAGACTTAAGAGCAGAAGAAAAGATGGAAAAATTCCACCATCTCCCAAAAAGAGATGTGGCAATCTTGAAGAGAAAATTATCTACC] [-] EMBL CB662973 [AAAGGTTTATCGATCCCAAGGGGTACAGATCCATAATAGACATATAGAGATTATTATACGCCAAGTAACATCAAAAGTGCGGGTTTCCGAAGATGGAATGTCTAATGTTTTTTTACCTGGGGAATTAATTGGACTATTGCGAGCAGAG CGAG C AGGGCGGGCTTTGGATGAATCGATCTATTATCGGGCAATCTTA TTGGGAATAACA AGGGTTTCCCTGAATACCCA AAGTTTCATATCTGAAGCA AGTTTTC AAGAAACTGCTCGAG TTTTAG CAAAAGCTGCCTTACGAGGTCGTATTGATTGGTTGAAAGGCCTGAAAGAAAACGTAGTTCTGGGGGGGATTATACCTGTTGGTACCGGATTCCAAAAATTTGTGCACCGTTACCCACAAAACAAGAACCTTTATTTCGAAATT C AAAAAAAAAACTATTTGCGTCGGAAATGAGAGATATTTTGTTTCT CC ATAC AGAATTAGTTTCTTCTGATTCTGACGTAACAAACAATTTCTATGAGACATCAGAATCACCATTTACCCCATTTATATGATTTAAGGATACATAAAGCAGATTTTTTACTTTAAACTAGATTTTTGACCTTAGAACGCTAAGAGGTTAGATTTTCTATTTTTATTTTAATTTAAAAAGAAGTTTAGTTAATTCATTAAGGTTATGCTTATACCATGTAGAAGGTTCCATCGGAACAATTATTATTTATTTCAAGCTATTTCGGCTCTTTCTTAATCTTCGAAAAGAAAGAAATTTCGTAATGGAAA ] [+] EMBL AK062380 [ GGGTTTCCGAAGATGGAATGTCTAATGTTTTTTTACCTGGGGAATTAATTGGACTATTGCGAGCAGAG CGAG C AGGGCGGGCTTTGGATGAATCGATCTATTATCGGGCAATCTTA TTGGGAATAACA AGGGTTTCCCTGAATACCCA AAGTTTCATATCTGAAGCA AGTTTTC AAGAAACTGCTCGAG TTTTAG CAAAAGCTGCCTTACGAGGTCGTATTGATTGGTTGAAAGGCCTGAAAGAAAACGTAGTTCTGGGGGGGATTATACCTGTTGGTACCGGATTCCAAAAATTTGTGCACCGTTACCCACAAAACAAGAACCTTTATTTCGAAATT CAAAAAAAAAAACTATTTGCGTCGGAAATGAGAGATATTTTGTTTCT CC ATAC AGAATTAGTTTCTTCTGATTCTGACGTAACAAACAATTTCTATGAGACATCAGAATCACCATTTACCCCATTTATATGATTTAAGGATACATAAAGCAGATTTTTTACTTTAAACTAGATTTTTGACCTTAGAACGCTAAGAGGTTAGATTTTCTATTTTTATTTTAATTTAAAAAGAAGTTTAGTTAATTCATTAAGGTTATGCTTATACCATGTAGAAGGTTCCATCGGAACAATTATTATTTATTTCAAGCTATTTCGGCTCTTTCTTAATCTTCGAAAAGAAAGAAATTTCGTAATGGAA ] [-] EMBL CA763501 [ AGAGGACGAGACAAGGGGGGGCTTTGGATGAATCGATCTATTATCGGGCAATCTTA TTGGGAATAACA AGGGTTTCCCTGAATACCCA AAGTTTCATATCTGAAGCA AGTTTTC AAGAAACTGCTCGAG TTTTAG CAAAAGCTGCCATACGAGGTCGTATTGATTGGTTGAAAGGCCTGAAAGAAAACGTAGTTCTGGGGGGGATTATACCTGTTGGTACCGGATTCCAAAAATTTGTGCACCGTTACCCCCAAGACAAGAACCTTTATTTCGAAATT C AAAAAAAACTATTTGCGTCGGAAATGAGAGATATTTTGTTTCT CC ATAC AGAATTAGTTTCTTCTGATTCTGACGTAACAAACAATTTCTATGAGACATCAGAATCCCCATTTACCCCATTTATATGATTTAAGGATACATAAAGCAGATTTTTTACTTTAAACTAGATTTTTGACCTTAGAACGCTAAGAGGTTAGATTTTCTATTTTTATTTTAATTTAAAAAGAAGTTTAGTTAATTCATTAAGGTTATGCTTATACCATGTAGAAGGTTCCATCGGAACAATTATTATTTATTTCAAGCTATTTCGGCTCTTTTTTAATCTTCGAAAAGAAAGAAATTTTGTAATGGAAAGGTAGGATGAAAAAAAAAAA ] [+] EMBL CB097223 [ GATGAATCGATCTATTATCGGGCAATCTTA TTGGGAATAACA AGGGTTTCCCTGAATACCCA AAGTTTCATATCTGAAGCA AGTTTTC AAGAAACTGCTCGAG TTTTAG CAAAAGCTGCCATACGAGGTCGTATTGATTGGTTGAAAGGCCTGAAAGAAAACGTAGTTCTGGGGGGGATTATACCTGTTGGTACCGGATTCCAAAAATTTGTGCACCGTTACCCACAAGACAAGAACCTTTATTTCGAAATT C AAAAAAAACTATTTGCGTCGGAAATGAGAGATATTTTGTTTCT CC ATAC AGAATTAGTTTCTTCTGATTCTGACGTAACAAACAATTTCTATGAGACATCAGAATCACCATTTACCCCATTTATATGATTTAAGGATACATAAAGCAGATTTTTTACTTTAAACTAGATTTTTGACCTTAGAACGCTAAGAGGTTAGATTTTCTATTTTTATTTTAATTTAAAAAGAAGTTTAGTTAATTCATTAAGGTTATGCTTATACCATGTAGAAGGTTCCATCGGAACAATTATTATTTATTTCAAGCTATTTCGGCTCTTTCTTAATCTTCGAAAAGAAAGAAATTTCGTAATGGAA ] [+] EMBL BI804283 [ ATCTTATTTGGGAATAACACAGGGTTTCCCTGAATACCCACAAGTTTCATATCTGAAGCACAGTTTTC AAGAAACTGCTCGAG TTTTAG CCAAAGCTGCCTTACGAGGTCGTATTGATTGGTTGAAAGGCCTGAAAGAAAACGTAGTTCTGGGGGGGATTATACCTGTTGGTACCGGATTCCCAAAATTTGTGCACCGTTACCCACCAAACCAGAACCTTTATTTCGAAATTCCAAAAAAAAAAACTATTTGCGTCGGAAATGAGAGATATTTTGTTTCT CC ATAC AGAATTAGTTTCTTCTGATTCTGACGTAACAAACAATTTCTATGAGACATCAGAATCACCATTTACCCCATTTATATGATTTAAGGATACATAAAGCAGATTTTTTACTTTAAACTAGATTTTTGACCTTAGAACGCTAAGAGGTTAGATTTTCTATTTTTATTTTAATTTAAAAAGAAGTTTAGTTAATTCATTAAGGTTATGCTTATACCATGTAGAAGGTTCCATCGGAACAATTATTATTTATTTCAAGCTATTTCGGCTCTTTCTTAATCTTCGAAAAGAAAGAAATTTCGTAATGGAAAGGTAGGATGAAAAA ] [+] EMBL BI801267 [ AGTTTCATA CTGAACCACAGTTTTCAAAGAAACTGCTCGAGTTTTTAGCCAAAAGCTGCCTTACGAGGTCGTATTGATTGGTTGAAAGGCCTGAAAGAAAACGTAGTTCTGGGGGGGATTATACCTGTTGGTACCGGATTCC AAAATTTGTGCACCGTTACCCACCAAACAAGAACCTTTATTTCGAAATT CCAAAAAAAAAACTATTTGCGTCGGAAATGAGAGATATTTTGTTTCT CC ATAC AGAATTAGTTTCTTCTGATTCTGACGTAAC AACCATTTCTATGAGACATCAGAATCACCATTTACCCCATTTATATGATTTAAGGATACATAAAGCAGATTTTTTACTTTAAACTAGATTTTTGACCTTAGAACGCTAAGAGGTTAGATTTTCTATTTTTATTTTAATTTAAAAAGAAGTTTAGTTAATTCATTAAGGTTATGCTTATACCATGTAGAAGGTTCCATCGGAACAATTATTATTTATTTCAAGCTATTTCGGCTCTTTCTTAATCTTCGAAAAGAAAGAAATTTCGTAATGGAAAGGTAGGATGAAAAAAAAA ] [+] EMBL CB627911 [ AAAGCTGTCTTACGAGGTCGTATTGATTGGTTGAAAGGCCTGAAACAAAACGTAGTTCTGGGGGGGATTATACCTGTTGGTACCGGATTCCAAAAATTTGTGCACCGTTACCCACAAGACAAGAACCTTTATTTCGAAATT CAAAAAAAAAAACTATTTGCGTCGGAAATGAGAGATATTTTGTTTCT CC ATAC AGAATTAGTTTCTTCTGATTCTGACGTAACAAACAATTTCTATGAGACATCAGAATCACCATTTACCCCATTTATATGATTTAAGGATACATAAAGCAGATTTTTTACTTTAAACTAGATTTTTGACCTTAGAACGCTAAGAGGTTAGATTTTCTATTTTTATTTTAATTTAAAAAGAAGTTTAGTTAATTCATTAAGGTTATGCTTATACCATGTAGAAGGTTCCATCGGAACAATTATTATTTATTTCAAGCTATTTCGGCTCTTTCTTAATCTTCGAAAAGAAAGAAATTTCGTAATGGAAAGGTAGGATGAAAAAAAAGAAAAAATCAAAAGGAAGTGTGGAAAAAATGACAAGAAGATATTGGAACATCAATTTGAAAGAGATGATAGAAGCGGGAGTTCATTTTGGTCATGGTATTAAGAAATGGAATCCTAAAATGGCCCCTTACATCTCGGCAAAGCGTAAAGGTACTCATATTACAAATCTCGCTAGAACCACCCGTTTTTTATCAGAAGCTTGTGATTTAGTTTTTGATGCAGCAAGTCAGGGAAAAAGCTTCTTAATTGTTGGTACCAAAAAAAGAGCAGCGGATTTAGTAGCATCAGCTGCAATAAGGGCTCGTTGTCATTATGTTAATAA ] [-] EMBL CB627099 [ AGCTGCCTTACGAGGTCGTATTGATTGGTTGAAAGCCCTGAAAGAAAACGTAGTTCTGGGGGGGATTATACCTGTTGGTACCGGATTCCAAAAATTTGTGCCCCGTTACCCCCAAGACAAGACCCTTTATTTCGAAATT CAAAAAAAAAAACTATTTGCGTCGGAAATGAGAGATATTTTGTTTCT CC ATAC AGAATTAGTTTCTTCTGATTCTGACGTAACAAACAATTTCTATGAGACATCAGAATCCCCATTTCCCCCATTTATATGATTTAAGGATACATAAAGCAGATTTTTTACTTTAAACTAGATTTTTGCCCTTAGAACGCTAAGAGGTTAGATTTTCTATTTTTATTTTAATTTAAAAAGAAGTTTAGTTAATTCATTAAGGTTATGCTTATCCCATGTAGAAGGTTCCATCGGAACAATTATTATTTATTTCAAGCTATTTCGGCTCTTTCTTAATCTTCGAAAAGAAAGAAATTTCGTAATGGAA ] [+] EMBL BI800531 [ GGATTCC AAAATTTGTGCACCGTTACCCAC AAACAAGAACCTTTATTTCGAAATT CGAAAAAAAAAACTATTTGCGTCGGAAATGAGAGATATTTTGTTTCTGCCGAGGCGAGAATTAGTTTCTTCTGATTCTGACGTAAC AAC ATTTCTATGAGACATCAGAATCACCATTTACCCCATTTATATGATTTAAGGATACATAAAGCAGATTTTTTACTTTAAACTAGATTTTTGACCTTAGAACGCTAAGAGGTTAGATTTTCTATTTTTATTTTAATTTAAAAAGAAGTTTAGTTAATTCATTAAGGTTATGCTTATACCATGTAGAAGGTTCCATCGGAACAATTATTATTTATTTCAAGCTATTTCGGCTCTTTCTTAATCTTCGAAAAGAAAGAAATTTCGTAATGGAAAGGTAGGACAAAAAAAAAA ] [+] EMBL BI804243 [ GATATTTTGTTTCT CC ATAC AGAATTAGTTTCTTCTGATTCTGACGTAACAAACAATTTCTATGAGACATCAGAATCACCATTTACCCCATTTATATGATTTAAGGATACATAAAGCAGATTTTTTACTTTAAACTAGATTTTTGACCTTAGAACGCTAAGAGGTTAGATTTTCTATTTTTATTTTAATTTAAAAAGAAGTTTAGTTAATTCATTAAGGTTATGCTTATACCATGTAGAAGGTTCCATCGGAACCATTATTATTTATTTCAAGCTATTTCGGCTCTTTCTTAATCTTCGAAAAGAAAGAAATTTCGTAATGGAAAGGTAGGATGAAAAAAAA ] [+] EMBL BI803865 [ GATATTTTGTTTCT CC ATAC AGAATTAGTTTCTTCTGATTCTGACGTAACAAACCATTTCTATGAGACATCAGAATCACCATTTACCCCATTTATATGATTTAAGGATACATAAAGCAGATTTTTTACTTTAAACTAGATTTTTGACCTTAGAACGCTAAGAGGTTAGATTTTCTATTTTTATTTTAATTTAAAAAGAAGTTTAGTTAATTCATTAAGGTTATGCTTATACCATGTAGAAGGTTCCATCGGAAC ATTATTATTTATTTCCAGCTATTTCGGCTCTTTCTTAATCTTCGAAAAGAAAGAAATTTCGTAATGGAAAGGTAGGATGAAAAAAAA ] [+] EMBL CB097218 [ GATACATAAAGCAGATTTTTTGCTTTAAACTAGATTTTTGACCTTAGAACGCTAAGAGGTTAGATTTTCTATTTTTATTTTAATTTAAAAAGAAGTTTAGTTAATTCATTAAGGTTATGCTTATACCATGTAGAAGGTTCCATCGGAACAATTATTATTTATTTCAAGCTATTTCGGCTCTTTCTTAATCTTCGAAAAGAAAGAAATTTCGTAATGGAAAGG ] [+] EMBL AU174024 [ AAGTGTGGAAAAAATGACAAGAAGATATTGGAACATCAATTTGAAAGAGATGATAGAAGCGGGAGTTCATTTTGGTCATGGTATTAAGAAATGGAATCCTAAAATGGCCCCTTACATCTCGGCAAAGCGTAAAGGTACTCATATTATAAATCTCGCTAGAACCACCCGTTTTTTATCAGAAGCTTGTGATTTAGTTTTTGATGCAGCAAGTCAGGGAAAAAGCTTCTTAATTGTTGGTACCAAAAAAAGAGCAGCGGATTTAGTAGCATCAGCTGCAATAAGGGCTCGTTGTCATTATGTTAATAAAAAGTGGTTCAGTGGTATGTTAACGAATTGGTCGATTACTAAAACTAGACTTTCTCAATTTAGAGACTTAAGAGCAGAAGAAAAGATGGAAAAATTCCACCATCTCCCAAAAAGAGATGTGGCAATCTTGAAGAGAAAATTATCTACC] consensusID : consensus_15073#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 662 fasta sequence [GTCCCGGCCCCCCCCTCGAGGTGGACGGTTCGTTAAGCTTGTTTAGGTGAAGGGCCGAGCCAAGGGGACCAAGGGTTTCCCTGAATCCCCAAAGTTTCATATTTGAACCAGGTTTTCAAGAAACTGCTCGAGTTTTACCAAAAGCTCCCTTCCGAGGTGGTATTGATTGGTTGAAAGGCCTGAAAAAAAAGGTAGTTTTGGGGGGGATTATCCCTGTTGGTCCCGGATTCCAAAAATTTGTGCCCCGTTACCCCCAAGCCAAGACCCTTTTTTTCGAAATTCAAAAAAAAAAATCTTTTTGCGTTGGAAATGAGAGATATTTTGTTTCCCCACACAGAATTAGTTTTTTGTGTTTTTGGCGTCACACACAATTTTTTTGAGACCTCAGAATCCCCCTTTCCCCCTTTTATTTGTTTTAGGGATACATAAAGCAGTTTTTTCTCTTTAAACTAGATTTTTGCCCTTAGAACGCTAAGGGGTTAGATTTTCTATTTTTATTTTAATTTAAAAAAGAGTTTAGTTTTCTCTTTAAGGTTGTGCTTATCCCGTGTAAGGGGTTCCCTCGGCACAATTTTTTTTTTTTTCAAGCTATTGGGGCTCTTTTTTTATTTTCAAAAAAAAAAAAATTTTGTAATGGAAAGGTGGGGTGAAAAAAAAAAAAA] [-] EMBL CA763502 [GTCCCGGCCCCCCCCTCGAGGTGGACGGTTCGTTAAGCTTGTTTAGGTGAAGGGCCGAGCCAAGGGGACCAAGGGTTTCCCTGAATCCCCAAAGTTTCATATTTGAACCAGGTTTTCAAGAAACTGCTCGAGTTTTACCAAAAGCTCCCTTCCGAGGTGGTATTGATTGGTTGAAAGGCCTGAAAAAAAAGGTAGTTTTGGGGGGGATTATCCCTGTTGGTCCCGGATTCCAAAAATTTGTGCCCCGTTACCCCCAAGCCAAGACCCTTTTTTTCGAAATTCAAAAAAAAAAATCTTTTTGCGTTGGAAATGAGAGATATTTTGTTTCCCCACACAGAATTAGTTTTTTGTGTTTTTGGCGTCACACACAATTTTTTTGAGACCTCAGAATCCCCCTTTCCCCCTTTTATTTGTTTTAGGGATACATAAAGCAGTTTTTTCTCTTTAAACTAGATTTTTGCCCTTAGAACGCTAAGGGGTTAGATTTTCTATTTTTATTTTAATTTAAAAAAGAGTTTAGTTTTCTCTTTAAGGTTGTGCTTATCCCGTGTAAGGGGTTCCCTCGGCACAATTTTTTTTTTTTTCAAGCTATTGGGGCTCTTTTTTTATTTTCAAAAAAAAAAAAATTTTGTAATGGAAAGGTGGGGTGAAAAAAAAAAAAA] consensusID : consensus_15073#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 660 fasta sequence [CAAAGGGCCACACAAGGCGGGCTTTGGATCAATCGATCTATTATCGGGCAATTTTATTGGGAATAACAAAGGTTTCCCTGAATACCCAAAGTTTTATATCTGAAGCAAGTTTTCAACAAACTGCTCGAGTTTTAGCAAAAACTGCCCTCCGAGGTTGTATTGATTGGTTGAAAGGCCTGAAAAAAAACGTAGTTCTGGGGGGGATTATACCTGTTGGTACCGGATTCCAAAAATTTGTGCCCCGTTACCCCCAAGACAAGAACCTTTATTTTGAAATTCAAAAAAAAAACTATTTGCGTTGGAAATGAGAGATATTTTGTTTCTCCATACAGAATTAGTTTTTTCTGATTTTGACGTAACAAACAATTTTTATGAGACATCAGAATCCCCCTTTACCCCATTTATATGATTTAAGGATACATAAAGCAGATTTTTTACTTTAAACTAGATTTTTGACCTTAGAACGCTAAGAGGTTAGATTTTCTATTTTTATTTTAATTTAAAAAGAAGTTTAGTTAATTCATTAAGGTTATGCTTATACCATGTAGAAGGTTCCATCGGAACAATTATTATTTATTTCCAGCTATTTCGGCTCTTTTTTAATCTTCGAAAAGAAAGAAATTTTGTAATGGAAAGGTAGGATGAAAAAAAAAAAAAAAA] [-] EMBL CA763760 [CAAAGGGCCACACAAGGCGGGCTTTGGATCAATCGATCTATTATCGGGCAATTTTATTGGGAATAACAAAGGTTTCCCTGAATACCCAAAGTTTTATATCTGAAGCAAGTTTTCAACAAACTGCTCGAGTTTTAGCAAAAACTGCCCTCCGAGGTTGTATTGATTGGTTGAAAGGCCTGAAAAAAAACGTAGTTCTGGGGGGGATTATACCTGTTGGTACCGGATTCCAAAAATTTGTGCCCCGTTACCCCCAAGACAAGAACCTTTATTTTGAAATTCAAAAAAAAAACTATTTGCGTTGGAAATGAGAGATATTTTGTTTCTCCATACAGAATTAGTTTTTTCTGATTTTGACGTAACAAACAATTTTTATGAGACATCAGAATCCCCCTTTACCCCATTTATATGATTTAAGGATACATAAAGCAGATTTTTTACTTTAAACTAGATTTTTGACCTTAGAACGCTAAGAGGTTAGATTTTCTATTTTTATTTTAATTTAAAAAGAAGTTTAGTTAATTCATTAAGGTTATGCTTATACCATGTAGAAGGTTCCATCGGAACAATTATTATTTATTTCCAGCTATTTCGGCTCTTTTTTAATCTTCGAAAAGAAAGAAATTTTGTAATGGAAAGGTAGGATGAAAAAAAAAAAAAAAA] [-] EMBL CA763754 [CAAAGGGCCACACAAGGCGGGCTTTGGATCAATCGATCTATTATCGGGCAATTTTATTGGGAATAACAAAGGTTTCCCTGAATACCCAAAGTTTTATATCTGAAGCAAGTTTTCAACAAACTGCTCGAGTTTTAGCAAAAACTGCCCTCCGAGGTTGTATTGATTGGTTGAAAGGCCTGAAAAAAAACGTAGTTCTGGGGGGGATTATACCTGTTGGTACCGGATTCCAAAAATTTGTGCCCCGTTACCCCCAAGACAAGAACCTTTATTTTGAAATTCAAAAAAAAAACTATTTGCGTTGGAAATGAGAGATATTTTGTTTCTCCATACAGAATTAGTTTTTTCTGATTTTGACGTAACAAACAATTTTTATGAGACATCAGAATCCCCCTTTACCCCATTTATATGATTTAAGGATACATAAAGCAGATTTTTTACTTTAAACTAGATTTTTGACCTTAGAACGCTAAGAGGTTAGATTTTCTATTTTTATTTTAATTTAAAAAGAAGTTTAGTTAATTCATTAAGGTTATGCTTATACCATGTAGAAGGTTCCATCGGAACAATTATTATTTATTTCCAGCTATTTCGGCTCTTTTTTAATCTTCGAAAAGAAAGAAATTTTGTAATGGAAAGGTAGGATGAAAAAAAAAAAAAAAA] consensusID : consensus_15073#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 451 fasta sequence [GGGAAGATTGGTACGAGATGATGTGTGTGCGTGTGTGCCTGCCCATGCCAAGGAAAATGTAGGTGTTGCTGTGCTGATTTGCTGACGTGACACCTACCATGTGTCTGATGGAAGACCATGCAGGAAATGCAACCATGTGTGACCCCCCATGTGTGATGATGGATGTTGAAAGGGATGACCAATGGAAAGCAGGATGTTGTGGTGACTGTTGAAACTGAGGATGTGTGTGTGGACCTTGAGCACGCTGAAAGGAGGGTTGAGGATGTGTTGCTGATTGTGTGTGATGTGTTGAATGTTGAGAAAAAGGAAGTGTTAGTTAATTCATTAAGGTTATGCTTATACCATGTAGAAGGTTCCATCGGAACAATTATTATTTATTTCAAGCTATTTCGGCTCTTTCTTAATCTTCGAAAAGCAAAGAAATTTCGTAATGGAAAGGTAGGATGAAAAA] [+] EMBL BI802537 [GGGAAGATTGGTACGAGATGATGTGTGTGCGTGTGTGCCTGCCCATGCCAAGGAAAATGTAGGTGTTGCTGTGCTGATTTGCTGACGTGACACCTACCATGTGTCTGATGGAAGACCATGCAGGAAATGCAACCATGTGTGACCCCCCATGTGTGATGATGGATGTTGAAAGGGATGACCAATGGAAAGCAGGATGTTGTGGTGACTGTTGAAACTGAGGATGTGTGTGTGGACCTTGAGCACGCTGAAAGGAGGGTTGAGGATGTGTTGCTGATTGTGTGTGATGTGTTGAATGTTGAGAAAAAGGAAGTGTTAGTTAATTCATTAAGGTTATGCTTATACCATGTAGAAGGTTCCATCGGAACAATTATTATTTATTTCAAGCTATTTCGGCTCTTTCTTAATCTTCGAAAAGCAAAGAAATTTCGTAATGGAAAGGTAGGATGAAAAA] consensusID : consensus_15073#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 371 fasta sequence [GATATTTTGTTTCTCCATACAGAATTAGTTTCTGTCTGGATTGCTGACGTAACTAACCATTTCCTATGAGACATGCAGAATCACCATGTTGACCCCATGTGTGATGATGGATTTAAGGATACATGAAAGCAGATTTTGTGTGACTTTGAAACTGAGATTGTTTGGACCTTAGAACGCTGAACGAGGTTAGATTGTTGCTGATTTTTATGTTTGAATGTTGAAAAAGAAGTTTAGTTAATTCCATTAAGGTTATGCTTATACCATGTAGAAGGTTCCATCGGAACATTATTATTTATTTCAAGCTATTTCGGCTCTTTCTTAATCTTCGAAAAGACAGAAATTTCGTAATGGAAAGGTAGGATGAAAAAAAA] [+] EMBL BI803755 [GATATTTTGTTTCTCCATACAGAATTAGTTTCTGTCTGGATTGCTGACGTAACTAACCATTTCCTATGAGACATGCAGAATCACCATGTTGACCCCATGTGTGATGATGGATTTAAGGATACATGAAAGCAGATTTTGTGTGACTTTGAAACTGAGATTGTTTGGACCTTAGAACGCTGAACGAGGTTAGATTGTTGCTGATTTTTATGTTTGAATGTTGAAAAAGAAGTTTAGTTAATTCCATTAAGGTTATGCTTATACCATGTAGAAGGTTCCATCGGAACATTATTATTTATTTCAAGCTATTTCGGCTCTTTCTTAATCTTCGAAAAGACAGAAATTTCGTAATGGAAAGGTAGGATGAAAAAAAA] consensusID : consensus_15073#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 359 fasta sequence [AAAAAAACTATTGCGCTCGGAAATGAGAGATATTTTGTTTCTCCATACAGAATTAGTTTCTTCTGATTCTGACGTAACAAACACATTTCTATGGAGACCTCAGAATCACCACTTTACCCCATTTATATGATTTAAGGATACATAACCGATTTTTTACTTTAAACTAGATTTTGACCTTAGAACCTAAGAGTTAGATTTTCTATTCTTATTTTAATTTACAAAAGAAGTTTATTAAATTCATTAAGTTATCCTTATACCATGTAGAAGTCCATCGACATTATTATTTATTTCAACCTATTTCGCCTCTTTCTTAATCTTCGAAAAGAAAGAACTTTCGTAATGGAAAGTAGGATGAAAAA] [+] EMBL BI804030 [AAAAAAACTATTGCGCTCGGAAATGAGAGATATTTTGTTTCTCCATACAGAATTAGTTTCTTCTGATTCTGACGTAACAAACACATTTCTATGGAGACCTCAGAATCACCACTTTACCCCATTTATATGATTTAAGGATACATAACCGATTTTTTACTTTAAACTAGATTTTGACCTTAGAACCTAAGAGTTAGATTTTCTATTCTTATTTTAATTTACAAAAGAAGTTTATTAAATTCATTAAGTTATCCTTATACCATGTAGAAGTCCATCGACATTATTATTTATTTCAACCTATTTCGCCTCTTTCTTAATCTTCGAAAAGAAAGAACTTTCGTAATGGAAAGTAGGATGAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15073#0 AAAGGTTTATCGATCCCAAGGGGTACAGATCCATAATAGACATATAGAGATTATTATACG 60 consensus_15073#2 ------------------------------------------------------------ consensus_15073#5 ------------------------------------------------------------ consensus_15073#1 ------------------------------------------------------------ consensus_15073#4 ------------------------------------------------------------ consensus_15073#3 ------------------------------------------------------------ consensus_15073#0 CCAAGTAACATCAAAAGTGCGGGTTTCCGAAGATGGAATGTCTAATGTTTTTTTACCTGG 120 consensus_15073#2 ------------------------------------------------------------ consensus_15073#5 ------------------------------------------------------------ consensus_15073#1 ------------------------------------------------------------ consensus_15073#4 ------------------------------------------------------------ consensus_15073#3 ------------------------------------------------------------ consensus_15073#0 GGAATTAATTGGACTATTGCGAGCAGAGCGAGCAGGGCGGGCTTTGGATGAATCGATCTA 180 consensus_15073#2 --------------------CAAAGGGCCACACAAGGCGGGCTTTGGATCAATCGATCTA 40 consensus_15073#5 ------------------------------------------------------------ consensus_15073#1 ----------------GTCCCGGCCCCCCCCTCGAGGTGGACGGTTCGTTAAGCT-TGTT 43 consensus_15073#4 ------------------------------------------------------------ consensus_15073#3 ------------------------------------------------------------ consensus_15073#0 TTATCGGGCAATCTTATTGGGAATAACAAGGGTTTCCCTGAATACCCAAAGTTTCATATC 240 consensus_15073#2 TTATCGGGCAATTTTATTGGGAATAACAAAGGTTTCCCTGAATACCCAAAGTTTTATATC 100 consensus_15073#5 ------------------------------------------------------------ consensus_15073#1 TAGGTGAAGGGCCGAGCCAAGGGGACCAAGGGTTTCCCTGAATCCCCAAAGTTTCATATT 103 consensus_15073#4 ------------------------------------------------------------ consensus_15073#3 ------------------------------------------------------------ consensus_15073#0 TGAAGCAAGTTTTCAAGAAACTGCTCGAGTTTTAGCAAAAGCTGCCTTACGAGGTCGTAT 300 consensus_15073#2 TGAAGCAAGTTTTCAACAAACTGCTCGAGTTTTAGCAAAAACTGCCCTCCGAGGTTGTAT 160 consensus_15073#5 ------------------------------------------------------------ consensus_15073#1 TGAACCAGGTTTTCAAGAAACTGCTCGAGTTTTACCAAAAGCTCCCTTCCGAGGTGGTAT 163 consensus_15073#4 ------------------------------------------------------------ consensus_15073#3 ------------------------------------------------------------ consensus_15073#0 TGATTGGTTGAAAGGCCTGAAAGAAAACGTAGTTCTGGGGGGGATTATACCTGTTGGTAC 360 consensus_15073#2 TGATTGGTTGAAAGGCCTGAAAAAAAACGTAGTTCTGGGGGGGATTATACCTGTTGGTAC 220 consensus_15073#5 ------------------------------------------------------------ consensus_15073#1 TGATTGGTTGAAAGGCCTGAAAAAAAAGGTAGTTTTGGGGGGGATTATCCCTGTTGGTCC 223 consensus_15073#4 ------------------------------------------------------------ consensus_15073#3 ---------GGGAAGATTGGTACGAGATGATGT---GTGTGCGTGTGTGCCTGCCCATGC 48 consensus_15073#0 CGGATTCCAAAAATTTGTGCACCGTTACCCACAAAACAAGAACCTTTATTTCGAAATTCA 420 consensus_15073#2 CGGATTCCAAAAATTTGTGCCCCGTTACCCCCAAGACAAGAACCTTTATTTTGAAATTCA 280 consensus_15073#5 ------------------------------------------------------------ consensus_15073#1 CGGATTCCAAAAATTTGTGCCCCGTTACCCCCAAGCCAAGACCCTTTTTTTCGAAATTCA 283 consensus_15073#4 ------------------------------------------------------------ consensus_15073#3 CAAGGA--AAATGTAGGTGTTGCTGTGCTGATTTGCTGACGTGACACCTACCATGTGTCT 106 consensus_15073#0 AAAAAAAAAA-CTATTTGCGTCGGAAATGAGAGATATTTTGTTTCTCCATACAGAATTAG 479 consensus_15073#2 AAAAAAAAA--CTATTTGCGTTGGAAATGAGAGATATTTTGTTTCTCCATACAGAATTAG 338 consensus_15073#5 ---AAAAAAA-CTATTGCGCTCGGAAATGAGAGATATTTTGTTTCTCCATACAGAATTAG 56 consensus_15073#1 AAAAAAAAAATCTTTTTGCGTTGGAAATGAGAGATATTTTGTTTCCCCACACAGAATTAG 343 consensus_15073#4 --------------------------------GATATTTTGTTTCTCCATACAGAATTAG 28 consensus_15073#3 GATGGAAGA------CCATGCAGGAAATGCAACCATGTGTGACCCCCCATGTGTGATGA- 159 * ** * *** ** * consensus_15073#0 TTTCT-TCTGATTC--TGACGTAACAAACA-ATTTCTATG-AGACAT-CAGAATCACC-- 531 consensus_15073#2 TTTTT-TCTGATTT--TGACGTAACAAACA-ATTTTTATG-AGACAT-CAGAATCCCC-- 390 consensus_15073#5 TTTCT-TCTGATTC--TGACGTAACAAACACATTTCTATGGAGACCT-CAGAATCACCA- 111 consensus_15073#1 TTTTT-TGTGTTTT--TGGCGTCACACACA-ATTTTTTTG-AGACCT-CAGAATCCCC-- 395 consensus_15073#4 TTTCTGTCTGGATTGCTGACGTAACTAACCATTTCCTATG-AGACATGCAGAATCACCAT 87 consensus_15073#3 ------TGGATGTT--GAAAGGGATGACCA-------ATGGAAAG---CAGGATG----- 196 * * * * * ** * * *** ** consensus_15073#0 ATTTACCCCATTTAT-----ATGATTTAAGGATACAT-AAAGCAGATTTT---TTACTTT 582 consensus_15073#2 CTTTACCCCATTTAT-----ATGATTTAAGGATACAT-AAAGCAGATTTT---TTACTTT 441 consensus_15073#5 CTTTACCCCATTTAT-----ATGATTTAAGGATACAT-AA--CCGATTTT---TTACTTT 160 consensus_15073#1 CTTTCCCCCTTTTAT-----TTGTTTTAGGGATACAT-AAAGCAGTTTTT---TCTCTTT 446 consensus_15073#4 GTTGACCCCATGTGTGATGATGGATTTAAGGATACATGAAAGCAGATTTTGTGTGACTTT 147 consensus_15073#3 --TTGTGGTGACTGT-----TGAAACTGAGGATGTGT--GTGTGGACCTTGA-GCACGCT 246 * * * * **** * * ** * * consensus_15073#0 -AAACT-AGATT--TTTGACCTTAGAACGCTAA--GAGGTTAGATTTTC-----TATTTT 631 consensus_15073#2 -AAACT-AGATT--TTTGACCTTAGAACGCTAA--GAGGTTAGATTTTC-----TATTTT 490 consensus_15073#5 -AAACT-AGATT--TT-GACCTTAGAAC-CTAA--GAG-TTAGATTTTC-----TATTCT 206 consensus_15073#1 -AAACT-AGATT--TTTGCCCTTAGAACGCTAA--GGGGTTAGATTTTC-----TATTTT 495 consensus_15073#4 GAAACTGAGATTGTTTGGACCTTAGAACGCTGAACGAGGTTAGATTGTTGCTGATTTTTA 207 consensus_15073#3 GAAAGGAGGGTT-----GAGGATGTGTTGCTGATTGTG-TGTGATGTGT---------TG 291 *** * ** * * ** * * * * *** consensus_15073#0 TATTTTAAT-TTA-AAAAGAAGT-TTAGTTAATTC-ATTAAGGTTATGCTTATACCATGT 687 consensus_15073#2 TATTTTAAT-TTA-AAAAGAAGT-TTAGTTAATTC-ATTAAGGTTATGCTTATACCATGT 546 consensus_15073#5 TATTTTAAT-TTACAAAAGAAGT-TTATTAAATTC-ATTAAG-TTATCCTTATACCATGT 262 consensus_15073#1 TATTTTAAT-TTA-AAAAAGAGT-TTAGTTTTCTC-TTTAAGGTTGTGCTTATCCCGTGT 551 consensus_15073#4 TGTTTGAATGTTGAAAAAGAAGT-TTAGTTAATTCCATTAAGGTTATGCTTATACCATGT 266 consensus_15073#3 AATGTTGAG---AAAAAGGAAGTGTTAGTTAATTC-ATTAAGGTTATGCTTATACCATGT 347 * * * *** *** *** * ** ***** ** * ***** ** *** consensus_15073#0 AGAAGGTTCCATCGGAACAATTATTATTTATTTCAAGCTATTTCGGCTCTTTCTTAATCT 747 consensus_15073#2 AGAAGGTTCCATCGGAACAATTATTATTTATTTCCAGCTATTTCGGCTCTTTTTTAATCT 606 consensus_15073#5 AGAAG--TCCATCGACA---TTATTATTTATTTCAACCTATTTCGCCTCTTTCTTAATCT 317 consensus_15073#1 AAGGGGTTCCCTCGGCACAATTTTTTTTTTTTTCAAGCTATTGGGGCTCTTTTTTTATTT 611 consensus_15073#4 AGAAGGTTCCATCGGAACA-TTATTATTTATTTCAAGCTATTTCGGCTCTTTCTTAATCT 325 consensus_15073#3 AGAAGGTTCCATCGGAACAATTATTATTTATTTCAAGCTATTTCGGCTCTTTCTTAATCT 407 * * *** *** * ** ** *** **** * ***** * ****** ** ** * consensus_15073#0 TCGAAAAG-AAAGAAATTTCGTAATGGAAAGGTAGGATGAAAAAAAAAAAAAAATCAAAA 806 consensus_15073#2 TCGAAAAG-AAAGAAATTTTGTAATGGAAAGGTAGGATGAAAAAAAAAAAAAAAA----- 660 consensus_15073#5 TCGAAAAG-AAAGAACTTTCGTAATGGAAAG-TAGGATGAAAAA---------------- 359 consensus_15073#1 TCAAAAAA-AAAAAAATTTTGTAATGGAAAGGTGGGGTGAAAAAAAAAAAAA-------- 662 consensus_15073#4 TCGAAAAG-ACAGAAATTTCGTAATGGAAAGGTAGGATGAAAAAAAA------------- 371 consensus_15073#3 TCGAAAAGCAAAGAAATTTCGTAATGGAAAGGTAGGATGAAAAA---------------- 451 ** **** * * ** *** *********** * ** ******* consensus_15073#0 GGAAGTGTGGAAAAAATGACAAGAAGATATTGGAACATCAATTTGAAAGAGATGATAGAA 866 consensus_15073#2 ------------------------------------------------------------ consensus_15073#5 ------------------------------------------------------------ consensus_15073#1 ------------------------------------------------------------ consensus_15073#4 ------------------------------------------------------------ consensus_15073#3 ------------------------------------------------------------ consensus_15073#0 GCGGGAGTTCATTTTGGTCATGGTATTAAGAAATGGAATCCTAAAATGGCCCCTTACATC 926 consensus_15073#2 ------------------------------------------------------------ consensus_15073#5 ------------------------------------------------------------ consensus_15073#1 ------------------------------------------------------------ consensus_15073#4 ------------------------------------------------------------ consensus_15073#3 ------------------------------------------------------------ consensus_15073#0 TCGGCAAAGCGTAAAGGTACTCATATTACAAATCTCGCTAGAACCACCCGTTTTTTATCA 986 consensus_15073#2 ------------------------------------------------------------ consensus_15073#5 ------------------------------------------------------------ consensus_15073#1 ------------------------------------------------------------ consensus_15073#4 ------------------------------------------------------------ consensus_15073#3 ------------------------------------------------------------ consensus_15073#0 GAAGCTTGTGATTTAGTTTTTGATGCAGCAAGTCAGGGAAAAAGCTTCTTAATTGTTGGT 1046 consensus_15073#2 ------------------------------------------------------------ consensus_15073#5 ------------------------------------------------------------ consensus_15073#1 ------------------------------------------------------------ consensus_15073#4 ------------------------------------------------------------ consensus_15073#3 ------------------------------------------------------------ consensus_15073#0 ACCAAAAAAAGAGCAGCGGATTTAGTAGCATCAGCTGCAATAAGGGCTCGTTGTCATTAT 1106 consensus_15073#2 ------------------------------------------------------------ consensus_15073#5 ------------------------------------------------------------ consensus_15073#1 ------------------------------------------------------------ consensus_15073#4 ------------------------------------------------------------ consensus_15073#3 ------------------------------------------------------------ consensus_15073#0 GTTAATAAAAAGTGGTTCAGTGGTATGTTAACGAATTGGTCGATTACTAAAACTAGACTT 1166 consensus_15073#2 ------------------------------------------------------------ consensus_15073#5 ------------------------------------------------------------ consensus_15073#1 ------------------------------------------------------------ consensus_15073#4 ------------------------------------------------------------ consensus_15073#3 ------------------------------------------------------------ consensus_15073#0 TCTCAATTTAGAGACTTAAGAGCAGAAGAAAAGATGGAAAAATTCCACCATCTCCCAAAA 1226 consensus_15073#2 ------------------------------------------------------------ consensus_15073#5 ------------------------------------------------------------ consensus_15073#1 ------------------------------------------------------------ consensus_15073#4 ------------------------------------------------------------ consensus_15073#3 ------------------------------------------------------------ consensus_15073#0 AGAGATGTGGCAATCTTGAAGAGAAAATTATCTACC 1262 consensus_15073#2 ------------------------------------ consensus_15073#5 ------------------------------------ consensus_15073#1 ------------------------------------ consensus_15073#4 ------------------------------------ consensus_15073#3 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Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||