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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15073#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1262 fasta sequence
[AAAGGTTTATCGATCCCAAGGGGTACAGATCCATAATAGACATATAGAGATTATTATACGCCAAGTAACATCAAAAGTGCGGGTTTCCGAAGATGGAATGTCTAATGTTTTTTTACCTGGGGAATTAATTGGACTATTGCGAGCAGAG--CGAG-C-AGGGCGGGCTTTGGATGAATCGATCTATTATCGGGCAATCTTA-TTGGGAATAACA-AGGGTTTCCCTGAATACCCA-AAGTTTCATATCTGAAGCA-AGTTTTC-AAGAAACTGCTCGAG-TTTTAG-CAAAAGCTGCCTTACGAGGTCGTATTGATTGGTTGAAAGGCCTGAAAGAAAACGTAGTTCTGGGGGGGATTATACCTGTTGGTACCGGATTCCAAAAATTTGTGCACCGTTACCCACAAAACAAGAACCTTTATTTCGAAATT-CAAAAAAAAAAACTATTTGCGTCGGAAATGAGAGATATTTTGTTTCT-CC-ATAC-AGAATTAGTTTCTTCTGATTCTGACGTAACAAACAATTTCTATGAGACATCAGAATCACCATTTACCCCATTTATATGATTTAAGGATACATAAAGCAGATTTTTTACTTTAAACTAGATTTTTGACCTTAGAACGCTAAGAGGTTAGATTTTCTATTTTTATTTTAATTTAAAAAGAAGTTTAGTTAATTCATTAAGGTTATGCTTATACCATGTAGAAGGTTCCATCGGAACAATTATTATTTATTTCAAGCTATTTCGGCTCTTTCTTAATCTTCGAAAAGAAAGAAATTTCGTAATGGAAAGGTAGGATGAAAAAAAAAAAAAAATCAAAAGGAAGTGTGGAAAAAATGACAAGAAGATATTGGAACATCAATTTGAAAGAGATGATAGAAGCGGGAGTTCATTTTGGTCATGGTATTAAGAAATGGAATCCTAAAATGGCCCCTTACATCTCGGCAAAGCGTAAAGGTACTCATATTACAAATCTCGCTAGAACCACCCGTTTTTTATCAGAAGCTTGTGATTTAGTTTTTGATGCAGCAAGTCAGGGAAAAAGCTTCTTAATTGTTGGTACCAAAAAAAGAGCAGCGGATTTAGTAGCATCAGCTGCAATAAGGGCTCGTTGTCATTATGTTAATAAAAAGTGGTTCAGTGGTATGTTAACGAATTGGTCGATTACTAAAACTAGACTTTCTCAATTTAGAGACTTAAGAGCAGAAGAAAAGATGGAAAAATTCCACCATCTCCCAAAAAGAGATGTGGCAATCTTGAAGAGAAAATTATCTACC]
[-] EMBL CB662973 [AAAGGTTTATCGATCCCAAGGGGTACAGATCCATAATAGACATATAGAGATTATTATACGCCAAGTAACATCAAAAGTGCGGGTTTCCGAAGATGGAATGTCTAATGTTTTTTTACCTGGGGAATTAATTGGACTATTGCGAGCAGAG CGAG C AGGGCGGGCTTTGGATGAATCGATCTATTATCGGGCAATCTTA TTGGGAATAACA AGGGTTTCCCTGAATACCCA AAGTTTCATATCTGAAGCA AGTTTTC AAGAAACTGCTCGAG TTTTAG CAAAAGCTGCCTTACGAGGTCGTATTGATTGGTTGAAAGGCCTGAAAGAAAACGTAGTTCTGGGGGGGATTATACCTGTTGGTACCGGATTCCAAAAATTTGTGCACCGTTACCCACAAAACAAGAACCTTTATTTCGAAATT C AAAAAAAAAACTATTTGCGTCGGAAATGAGAGATATTTTGTTTCT CC ATAC AGAATTAGTTTCTTCTGATTCTGACGTAACAAACAATTTCTATGAGACATCAGAATCACCATTTACCCCATTTATATGATTTAAGGATACATAAAGCAGATTTTTTACTTTAAACTAGATTTTTGACCTTAGAACGCTAAGAGGTTAGATTTTCTATTTTTATTTTAATTTAAAAAGAAGTTTAGTTAATTCATTAAGGTTATGCTTATACCATGTAGAAGGTTCCATCGGAACAATTATTATTTATTTCAAGCTATTTCGGCTCTTTCTTAATCTTCGAAAAGAAAGAAATTTCGTAATGGAAA ]
[+] EMBL AK062380 [ GGGTTTCCGAAGATGGAATGTCTAATGTTTTTTTACCTGGGGAATTAATTGGACTATTGCGAGCAGAG CGAG C AGGGCGGGCTTTGGATGAATCGATCTATTATCGGGCAATCTTA TTGGGAATAACA AGGGTTTCCCTGAATACCCA AAGTTTCATATCTGAAGCA AGTTTTC AAGAAACTGCTCGAG TTTTAG CAAAAGCTGCCTTACGAGGTCGTATTGATTGGTTGAAAGGCCTGAAAGAAAACGTAGTTCTGGGGGGGATTATACCTGTTGGTACCGGATTCCAAAAATTTGTGCACCGTTACCCACAAAACAAGAACCTTTATTTCGAAATT CAAAAAAAAAAACTATTTGCGTCGGAAATGAGAGATATTTTGTTTCT CC ATAC AGAATTAGTTTCTTCTGATTCTGACGTAACAAACAATTTCTATGAGACATCAGAATCACCATTTACCCCATTTATATGATTTAAGGATACATAAAGCAGATTTTTTACTTTAAACTAGATTTTTGACCTTAGAACGCTAAGAGGTTAGATTTTCTATTTTTATTTTAATTTAAAAAGAAGTTTAGTTAATTCATTAAGGTTATGCTTATACCATGTAGAAGGTTCCATCGGAACAATTATTATTTATTTCAAGCTATTTCGGCTCTTTCTTAATCTTCGAAAAGAAAGAAATTTCGTAATGGAA ]
[-] EMBL CA763501 [ AGAGGACGAGACAAGGGGGGGCTTTGGATGAATCGATCTATTATCGGGCAATCTTA TTGGGAATAACA AGGGTTTCCCTGAATACCCA AAGTTTCATATCTGAAGCA AGTTTTC AAGAAACTGCTCGAG TTTTAG CAAAAGCTGCCATACGAGGTCGTATTGATTGGTTGAAAGGCCTGAAAGAAAACGTAGTTCTGGGGGGGATTATACCTGTTGGTACCGGATTCCAAAAATTTGTGCACCGTTACCCCCAAGACAAGAACCTTTATTTCGAAATT C AAAAAAAACTATTTGCGTCGGAAATGAGAGATATTTTGTTTCT CC ATAC AGAATTAGTTTCTTCTGATTCTGACGTAACAAACAATTTCTATGAGACATCAGAATCCCCATTTACCCCATTTATATGATTTAAGGATACATAAAGCAGATTTTTTACTTTAAACTAGATTTTTGACCTTAGAACGCTAAGAGGTTAGATTTTCTATTTTTATTTTAATTTAAAAAGAAGTTTAGTTAATTCATTAAGGTTATGCTTATACCATGTAGAAGGTTCCATCGGAACAATTATTATTTATTTCAAGCTATTTCGGCTCTTTTTTAATCTTCGAAAAGAAAGAAATTTTGTAATGGAAAGGTAGGATGAAAAAAAAAAA ]
[+] EMBL CB097223 [ GATGAATCGATCTATTATCGGGCAATCTTA TTGGGAATAACA AGGGTTTCCCTGAATACCCA AAGTTTCATATCTGAAGCA AGTTTTC AAGAAACTGCTCGAG TTTTAG CAAAAGCTGCCATACGAGGTCGTATTGATTGGTTGAAAGGCCTGAAAGAAAACGTAGTTCTGGGGGGGATTATACCTGTTGGTACCGGATTCCAAAAATTTGTGCACCGTTACCCACAAGACAAGAACCTTTATTTCGAAATT C AAAAAAAACTATTTGCGTCGGAAATGAGAGATATTTTGTTTCT CC ATAC AGAATTAGTTTCTTCTGATTCTGACGTAACAAACAATTTCTATGAGACATCAGAATCACCATTTACCCCATTTATATGATTTAAGGATACATAAAGCAGATTTTTTACTTTAAACTAGATTTTTGACCTTAGAACGCTAAGAGGTTAGATTTTCTATTTTTATTTTAATTTAAAAAGAAGTTTAGTTAATTCATTAAGGTTATGCTTATACCATGTAGAAGGTTCCATCGGAACAATTATTATTTATTTCAAGCTATTTCGGCTCTTTCTTAATCTTCGAAAAGAAAGAAATTTCGTAATGGAA ]
[+] EMBL BI804283 [ ATCTTATTTGGGAATAACACAGGGTTTCCCTGAATACCCACAAGTTTCATATCTGAAGCACAGTTTTC AAGAAACTGCTCGAG TTTTAG CCAAAGCTGCCTTACGAGGTCGTATTGATTGGTTGAAAGGCCTGAAAGAAAACGTAGTTCTGGGGGGGATTATACCTGTTGGTACCGGATTCCCAAAATTTGTGCACCGTTACCCACCAAACCAGAACCTTTATTTCGAAATTCCAAAAAAAAAAACTATTTGCGTCGGAAATGAGAGATATTTTGTTTCT CC ATAC AGAATTAGTTTCTTCTGATTCTGACGTAACAAACAATTTCTATGAGACATCAGAATCACCATTTACCCCATTTATATGATTTAAGGATACATAAAGCAGATTTTTTACTTTAAACTAGATTTTTGACCTTAGAACGCTAAGAGGTTAGATTTTCTATTTTTATTTTAATTTAAAAAGAAGTTTAGTTAATTCATTAAGGTTATGCTTATACCATGTAGAAGGTTCCATCGGAACAATTATTATTTATTTCAAGCTATTTCGGCTCTTTCTTAATCTTCGAAAAGAAAGAAATTTCGTAATGGAAAGGTAGGATGAAAAA ]
[+] EMBL BI801267 [ AGTTTCATA CTGAACCACAGTTTTCAAAGAAACTGCTCGAGTTTTTAGCCAAAAGCTGCCTTACGAGGTCGTATTGATTGGTTGAAAGGCCTGAAAGAAAACGTAGTTCTGGGGGGGATTATACCTGTTGGTACCGGATTCC AAAATTTGTGCACCGTTACCCACCAAACAAGAACCTTTATTTCGAAATT CCAAAAAAAAAACTATTTGCGTCGGAAATGAGAGATATTTTGTTTCT CC ATAC AGAATTAGTTTCTTCTGATTCTGACGTAAC AACCATTTCTATGAGACATCAGAATCACCATTTACCCCATTTATATGATTTAAGGATACATAAAGCAGATTTTTTACTTTAAACTAGATTTTTGACCTTAGAACGCTAAGAGGTTAGATTTTCTATTTTTATTTTAATTTAAAAAGAAGTTTAGTTAATTCATTAAGGTTATGCTTATACCATGTAGAAGGTTCCATCGGAACAATTATTATTTATTTCAAGCTATTTCGGCTCTTTCTTAATCTTCGAAAAGAAAGAAATTTCGTAATGGAAAGGTAGGATGAAAAAAAAA ]
[+] EMBL CB627911 [ AAAGCTGTCTTACGAGGTCGTATTGATTGGTTGAAAGGCCTGAAACAAAACGTAGTTCTGGGGGGGATTATACCTGTTGGTACCGGATTCCAAAAATTTGTGCACCGTTACCCACAAGACAAGAACCTTTATTTCGAAATT CAAAAAAAAAAACTATTTGCGTCGGAAATGAGAGATATTTTGTTTCT CC ATAC AGAATTAGTTTCTTCTGATTCTGACGTAACAAACAATTTCTATGAGACATCAGAATCACCATTTACCCCATTTATATGATTTAAGGATACATAAAGCAGATTTTTTACTTTAAACTAGATTTTTGACCTTAGAACGCTAAGAGGTTAGATTTTCTATTTTTATTTTAATTTAAAAAGAAGTTTAGTTAATTCATTAAGGTTATGCTTATACCATGTAGAAGGTTCCATCGGAACAATTATTATTTATTTCAAGCTATTTCGGCTCTTTCTTAATCTTCGAAAAGAAAGAAATTTCGTAATGGAAAGGTAGGATGAAAAAAAAGAAAAAATCAAAAGGAAGTGTGGAAAAAATGACAAGAAGATATTGGAACATCAATTTGAAAGAGATGATAGAAGCGGGAGTTCATTTTGGTCATGGTATTAAGAAATGGAATCCTAAAATGGCCCCTTACATCTCGGCAAAGCGTAAAGGTACTCATATTACAAATCTCGCTAGAACCACCCGTTTTTTATCAGAAGCTTGTGATTTAGTTTTTGATGCAGCAAGTCAGGGAAAAAGCTTCTTAATTGTTGGTACCAAAAAAAGAGCAGCGGATTTAGTAGCATCAGCTGCAATAAGGGCTCGTTGTCATTATGTTAATAA ]
[-] EMBL CB627099 [ AGCTGCCTTACGAGGTCGTATTGATTGGTTGAAAGCCCTGAAAGAAAACGTAGTTCTGGGGGGGATTATACCTGTTGGTACCGGATTCCAAAAATTTGTGCCCCGTTACCCCCAAGACAAGACCCTTTATTTCGAAATT CAAAAAAAAAAACTATTTGCGTCGGAAATGAGAGATATTTTGTTTCT CC ATAC AGAATTAGTTTCTTCTGATTCTGACGTAACAAACAATTTCTATGAGACATCAGAATCCCCATTTCCCCCATTTATATGATTTAAGGATACATAAAGCAGATTTTTTACTTTAAACTAGATTTTTGCCCTTAGAACGCTAAGAGGTTAGATTTTCTATTTTTATTTTAATTTAAAAAGAAGTTTAGTTAATTCATTAAGGTTATGCTTATCCCATGTAGAAGGTTCCATCGGAACAATTATTATTTATTTCAAGCTATTTCGGCTCTTTCTTAATCTTCGAAAAGAAAGAAATTTCGTAATGGAA ]
[+] EMBL BI800531 [ GGATTCC AAAATTTGTGCACCGTTACCCAC AAACAAGAACCTTTATTTCGAAATT CGAAAAAAAAAACTATTTGCGTCGGAAATGAGAGATATTTTGTTTCTGCCGAGGCGAGAATTAGTTTCTTCTGATTCTGACGTAAC AAC ATTTCTATGAGACATCAGAATCACCATTTACCCCATTTATATGATTTAAGGATACATAAAGCAGATTTTTTACTTTAAACTAGATTTTTGACCTTAGAACGCTAAGAGGTTAGATTTTCTATTTTTATTTTAATTTAAAAAGAAGTTTAGTTAATTCATTAAGGTTATGCTTATACCATGTAGAAGGTTCCATCGGAACAATTATTATTTATTTCAAGCTATTTCGGCTCTTTCTTAATCTTCGAAAAGAAAGAAATTTCGTAATGGAAAGGTAGGACAAAAAAAAAA ]
[+] EMBL BI804243 [ GATATTTTGTTTCT CC ATAC AGAATTAGTTTCTTCTGATTCTGACGTAACAAACAATTTCTATGAGACATCAGAATCACCATTTACCCCATTTATATGATTTAAGGATACATAAAGCAGATTTTTTACTTTAAACTAGATTTTTGACCTTAGAACGCTAAGAGGTTAGATTTTCTATTTTTATTTTAATTTAAAAAGAAGTTTAGTTAATTCATTAAGGTTATGCTTATACCATGTAGAAGGTTCCATCGGAACCATTATTATTTATTTCAAGCTATTTCGGCTCTTTCTTAATCTTCGAAAAGAAAGAAATTTCGTAATGGAAAGGTAGGATGAAAAAAAA ]
[+] EMBL BI803865 [ GATATTTTGTTTCT CC ATAC AGAATTAGTTTCTTCTGATTCTGACGTAACAAACCATTTCTATGAGACATCAGAATCACCATTTACCCCATTTATATGATTTAAGGATACATAAAGCAGATTTTTTACTTTAAACTAGATTTTTGACCTTAGAACGCTAAGAGGTTAGATTTTCTATTTTTATTTTAATTTAAAAAGAAGTTTAGTTAATTCATTAAGGTTATGCTTATACCATGTAGAAGGTTCCATCGGAAC ATTATTATTTATTTCCAGCTATTTCGGCTCTTTCTTAATCTTCGAAAAGAAAGAAATTTCGTAATGGAAAGGTAGGATGAAAAAAAA ]
[+] EMBL CB097218 [ GATACATAAAGCAGATTTTTTGCTTTAAACTAGATTTTTGACCTTAGAACGCTAAGAGGTTAGATTTTCTATTTTTATTTTAATTTAAAAAGAAGTTTAGTTAATTCATTAAGGTTATGCTTATACCATGTAGAAGGTTCCATCGGAACAATTATTATTTATTTCAAGCTATTTCGGCTCTTTCTTAATCTTCGAAAAGAAAGAAATTTCGTAATGGAAAGG ]
[+] EMBL AU174024 [ AAGTGTGGAAAAAATGACAAGAAGATATTGGAACATCAATTTGAAAGAGATGATAGAAGCGGGAGTTCATTTTGGTCATGGTATTAAGAAATGGAATCCTAAAATGGCCCCTTACATCTCGGCAAAGCGTAAAGGTACTCATATTATAAATCTCGCTAGAACCACCCGTTTTTTATCAGAAGCTTGTGATTTAGTTTTTGATGCAGCAAGTCAGGGAAAAAGCTTCTTAATTGTTGGTACCAAAAAAAGAGCAGCGGATTTAGTAGCATCAGCTGCAATAAGGGCTCGTTGTCATTATGTTAATAAAAAGTGGTTCAGTGGTATGTTAACGAATTGGTCGATTACTAAAACTAGACTTTCTCAATTTAGAGACTTAAGAGCAGAAGAAAAGATGGAAAAATTCCACCATCTCCCAAAAAGAGATGTGGCAATCTTGAAGAGAAAATTATCTACC]
consensusID : consensus_15073#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 662 fasta sequence
[GTCCCGGCCCCCCCCTCGAGGTGGACGGTTCGTTAAGCTTGTTTAGGTGAAGGGCCGAGCCAAGGGGACCAAGGGTTTCCCTGAATCCCCAAAGTTTCATATTTGAACCAGGTTTTCAAGAAACTGCTCGAGTTTTACCAAAAGCTCCCTTCCGAGGTGGTATTGATTGGTTGAAAGGCCTGAAAAAAAAGGTAGTTTTGGGGGGGATTATCCCTGTTGGTCCCGGATTCCAAAAATTTGTGCCCCGTTACCCCCAAGCCAAGACCCTTTTTTTCGAAATTCAAAAAAAAAAATCTTTTTGCGTTGGAAATGAGAGATATTTTGTTTCCCCACACAGAATTAGTTTTTTGTGTTTTTGGCGTCACACACAATTTTTTTGAGACCTCAGAATCCCCCTTTCCCCCTTTTATTTGTTTTAGGGATACATAAAGCAGTTTTTTCTCTTTAAACTAGATTTTTGCCCTTAGAACGCTAAGGGGTTAGATTTTCTATTTTTATTTTAATTTAAAAAAGAGTTTAGTTTTCTCTTTAAGGTTGTGCTTATCCCGTGTAAGGGGTTCCCTCGGCACAATTTTTTTTTTTTTCAAGCTATTGGGGCTCTTTTTTTATTTTCAAAAAAAAAAAAATTTTGTAATGGAAAGGTGGGGTGAAAAAAAAAAAAA]
[-] EMBL CA763502 [GTCCCGGCCCCCCCCTCGAGGTGGACGGTTCGTTAAGCTTGTTTAGGTGAAGGGCCGAGCCAAGGGGACCAAGGGTTTCCCTGAATCCCCAAAGTTTCATATTTGAACCAGGTTTTCAAGAAACTGCTCGAGTTTTACCAAAAGCTCCCTTCCGAGGTGGTATTGATTGGTTGAAAGGCCTGAAAAAAAAGGTAGTTTTGGGGGGGATTATCCCTGTTGGTCCCGGATTCCAAAAATTTGTGCCCCGTTACCCCCAAGCCAAGACCCTTTTTTTCGAAATTCAAAAAAAAAAATCTTTTTGCGTTGGAAATGAGAGATATTTTGTTTCCCCACACAGAATTAGTTTTTTGTGTTTTTGGCGTCACACACAATTTTTTTGAGACCTCAGAATCCCCCTTTCCCCCTTTTATTTGTTTTAGGGATACATAAAGCAGTTTTTTCTCTTTAAACTAGATTTTTGCCCTTAGAACGCTAAGGGGTTAGATTTTCTATTTTTATTTTAATTTAAAAAAGAGTTTAGTTTTCTCTTTAAGGTTGTGCTTATCCCGTGTAAGGGGTTCCCTCGGCACAATTTTTTTTTTTTTCAAGCTATTGGGGCTCTTTTTTTATTTTCAAAAAAAAAAAAATTTTGTAATGGAAAGGTGGGGTGAAAAAAAAAAAAA]
consensusID : consensus_15073#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 660 fasta sequence
[CAAAGGGCCACACAAGGCGGGCTTTGGATCAATCGATCTATTATCGGGCAATTTTATTGGGAATAACAAAGGTTTCCCTGAATACCCAAAGTTTTATATCTGAAGCAAGTTTTCAACAAACTGCTCGAGTTTTAGCAAAAACTGCCCTCCGAGGTTGTATTGATTGGTTGAAAGGCCTGAAAAAAAACGTAGTTCTGGGGGGGATTATACCTGTTGGTACCGGATTCCAAAAATTTGTGCCCCGTTACCCCCAAGACAAGAACCTTTATTTTGAAATTCAAAAAAAAAACTATTTGCGTTGGAAATGAGAGATATTTTGTTTCTCCATACAGAATTAGTTTTTTCTGATTTTGACGTAACAAACAATTTTTATGAGACATCAGAATCCCCCTTTACCCCATTTATATGATTTAAGGATACATAAAGCAGATTTTTTACTTTAAACTAGATTTTTGACCTTAGAACGCTAAGAGGTTAGATTTTCTATTTTTATTTTAATTTAAAAAGAAGTTTAGTTAATTCATTAAGGTTATGCTTATACCATGTAGAAGGTTCCATCGGAACAATTATTATTTATTTCCAGCTATTTCGGCTCTTTTTTAATCTTCGAAAAGAAAGAAATTTTGTAATGGAAAGGTAGGATGAAAAAAAAAAAAAAAA]
[-] EMBL CA763760 [CAAAGGGCCACACAAGGCGGGCTTTGGATCAATCGATCTATTATCGGGCAATTTTATTGGGAATAACAAAGGTTTCCCTGAATACCCAAAGTTTTATATCTGAAGCAAGTTTTCAACAAACTGCTCGAGTTTTAGCAAAAACTGCCCTCCGAGGTTGTATTGATTGGTTGAAAGGCCTGAAAAAAAACGTAGTTCTGGGGGGGATTATACCTGTTGGTACCGGATTCCAAAAATTTGTGCCCCGTTACCCCCAAGACAAGAACCTTTATTTTGAAATTCAAAAAAAAAACTATTTGCGTTGGAAATGAGAGATATTTTGTTTCTCCATACAGAATTAGTTTTTTCTGATTTTGACGTAACAAACAATTTTTATGAGACATCAGAATCCCCCTTTACCCCATTTATATGATTTAAGGATACATAAAGCAGATTTTTTACTTTAAACTAGATTTTTGACCTTAGAACGCTAAGAGGTTAGATTTTCTATTTTTATTTTAATTTAAAAAGAAGTTTAGTTAATTCATTAAGGTTATGCTTATACCATGTAGAAGGTTCCATCGGAACAATTATTATTTATTTCCAGCTATTTCGGCTCTTTTTTAATCTTCGAAAAGAAAGAAATTTTGTAATGGAAAGGTAGGATGAAAAAAAAAAAAAAAA]
[-] EMBL CA763754 [CAAAGGGCCACACAAGGCGGGCTTTGGATCAATCGATCTATTATCGGGCAATTTTATTGGGAATAACAAAGGTTTCCCTGAATACCCAAAGTTTTATATCTGAAGCAAGTTTTCAACAAACTGCTCGAGTTTTAGCAAAAACTGCCCTCCGAGGTTGTATTGATTGGTTGAAAGGCCTGAAAAAAAACGTAGTTCTGGGGGGGATTATACCTGTTGGTACCGGATTCCAAAAATTTGTGCCCCGTTACCCCCAAGACAAGAACCTTTATTTTGAAATTCAAAAAAAAAACTATTTGCGTTGGAAATGAGAGATATTTTGTTTCTCCATACAGAATTAGTTTTTTCTGATTTTGACGTAACAAACAATTTTTATGAGACATCAGAATCCCCCTTTACCCCATTTATATGATTTAAGGATACATAAAGCAGATTTTTTACTTTAAACTAGATTTTTGACCTTAGAACGCTAAGAGGTTAGATTTTCTATTTTTATTTTAATTTAAAAAGAAGTTTAGTTAATTCATTAAGGTTATGCTTATACCATGTAGAAGGTTCCATCGGAACAATTATTATTTATTTCCAGCTATTTCGGCTCTTTTTTAATCTTCGAAAAGAAAGAAATTTTGTAATGGAAAGGTAGGATGAAAAAAAAAAAAAAAA]
consensusID : consensus_15073#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 451 fasta sequence
[GGGAAGATTGGTACGAGATGATGTGTGTGCGTGTGTGCCTGCCCATGCCAAGGAAAATGTAGGTGTTGCTGTGCTGATTTGCTGACGTGACACCTACCATGTGTCTGATGGAAGACCATGCAGGAAATGCAACCATGTGTGACCCCCCATGTGTGATGATGGATGTTGAAAGGGATGACCAATGGAAAGCAGGATGTTGTGGTGACTGTTGAAACTGAGGATGTGTGTGTGGACCTTGAGCACGCTGAAAGGAGGGTTGAGGATGTGTTGCTGATTGTGTGTGATGTGTTGAATGTTGAGAAAAAGGAAGTGTTAGTTAATTCATTAAGGTTATGCTTATACCATGTAGAAGGTTCCATCGGAACAATTATTATTTATTTCAAGCTATTTCGGCTCTTTCTTAATCTTCGAAAAGCAAAGAAATTTCGTAATGGAAAGGTAGGATGAAAAA]
[+] EMBL BI802537 [GGGAAGATTGGTACGAGATGATGTGTGTGCGTGTGTGCCTGCCCATGCCAAGGAAAATGTAGGTGTTGCTGTGCTGATTTGCTGACGTGACACCTACCATGTGTCTGATGGAAGACCATGCAGGAAATGCAACCATGTGTGACCCCCCATGTGTGATGATGGATGTTGAAAGGGATGACCAATGGAAAGCAGGATGTTGTGGTGACTGTTGAAACTGAGGATGTGTGTGTGGACCTTGAGCACGCTGAAAGGAGGGTTGAGGATGTGTTGCTGATTGTGTGTGATGTGTTGAATGTTGAGAAAAAGGAAGTGTTAGTTAATTCATTAAGGTTATGCTTATACCATGTAGAAGGTTCCATCGGAACAATTATTATTTATTTCAAGCTATTTCGGCTCTTTCTTAATCTTCGAAAAGCAAAGAAATTTCGTAATGGAAAGGTAGGATGAAAAA]
consensusID : consensus_15073#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 371 fasta sequence
[GATATTTTGTTTCTCCATACAGAATTAGTTTCTGTCTGGATTGCTGACGTAACTAACCATTTCCTATGAGACATGCAGAATCACCATGTTGACCCCATGTGTGATGATGGATTTAAGGATACATGAAAGCAGATTTTGTGTGACTTTGAAACTGAGATTGTTTGGACCTTAGAACGCTGAACGAGGTTAGATTGTTGCTGATTTTTATGTTTGAATGTTGAAAAAGAAGTTTAGTTAATTCCATTAAGGTTATGCTTATACCATGTAGAAGGTTCCATCGGAACATTATTATTTATTTCAAGCTATTTCGGCTCTTTCTTAATCTTCGAAAAGACAGAAATTTCGTAATGGAAAGGTAGGATGAAAAAAAA]
[+] EMBL BI803755 [GATATTTTGTTTCTCCATACAGAATTAGTTTCTGTCTGGATTGCTGACGTAACTAACCATTTCCTATGAGACATGCAGAATCACCATGTTGACCCCATGTGTGATGATGGATTTAAGGATACATGAAAGCAGATTTTGTGTGACTTTGAAACTGAGATTGTTTGGACCTTAGAACGCTGAACGAGGTTAGATTGTTGCTGATTTTTATGTTTGAATGTTGAAAAAGAAGTTTAGTTAATTCCATTAAGGTTATGCTTATACCATGTAGAAGGTTCCATCGGAACATTATTATTTATTTCAAGCTATTTCGGCTCTTTCTTAATCTTCGAAAAGACAGAAATTTCGTAATGGAAAGGTAGGATGAAAAAAAA]
consensusID : consensus_15073#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 359 fasta sequence
[AAAAAAACTATTGCGCTCGGAAATGAGAGATATTTTGTTTCTCCATACAGAATTAGTTTCTTCTGATTCTGACGTAACAAACACATTTCTATGGAGACCTCAGAATCACCACTTTACCCCATTTATATGATTTAAGGATACATAACCGATTTTTTACTTTAAACTAGATTTTGACCTTAGAACCTAAGAGTTAGATTTTCTATTCTTATTTTAATTTACAAAAGAAGTTTATTAAATTCATTAAGTTATCCTTATACCATGTAGAAGTCCATCGACATTATTATTTATTTCAACCTATTTCGCCTCTTTCTTAATCTTCGAAAAGAAAGAACTTTCGTAATGGAAAGTAGGATGAAAAA]
[+] EMBL BI804030 [AAAAAAACTATTGCGCTCGGAAATGAGAGATATTTTGTTTCTCCATACAGAATTAGTTTCTTCTGATTCTGACGTAACAAACACATTTCTATGGAGACCTCAGAATCACCACTTTACCCCATTTATATGATTTAAGGATACATAACCGATTTTTTACTTTAAACTAGATTTTGACCTTAGAACCTAAGAGTTAGATTTTCTATTCTTATTTTAATTTACAAAAGAAGTTTATTAAATTCATTAAGTTATCCTTATACCATGTAGAAGTCCATCGACATTATTATTTATTTCAACCTATTTCGCCTCTTTCTTAATCTTCGAAAAGAAAGAACTTTCGTAATGGAAAGTAGGATGAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15073#0 AAAGGTTTATCGATCCCAAGGGGTACAGATCCATAATAGACATATAGAGATTATTATACG 60
consensus_15073#2 ------------------------------------------------------------
consensus_15073#5 ------------------------------------------------------------
consensus_15073#1 ------------------------------------------------------------
consensus_15073#4 ------------------------------------------------------------
consensus_15073#3 ------------------------------------------------------------
consensus_15073#0 CCAAGTAACATCAAAAGTGCGGGTTTCCGAAGATGGAATGTCTAATGTTTTTTTACCTGG 120
consensus_15073#2 ------------------------------------------------------------
consensus_15073#5 ------------------------------------------------------------
consensus_15073#1 ------------------------------------------------------------
consensus_15073#4 ------------------------------------------------------------
consensus_15073#3 ------------------------------------------------------------
consensus_15073#0 GGAATTAATTGGACTATTGCGAGCAGAGCGAGCAGGGCGGGCTTTGGATGAATCGATCTA 180
consensus_15073#2 --------------------CAAAGGGCCACACAAGGCGGGCTTTGGATCAATCGATCTA 40
consensus_15073#5 ------------------------------------------------------------
consensus_15073#1 ----------------GTCCCGGCCCCCCCCTCGAGGTGGACGGTTCGTTAAGCT-TGTT 43
consensus_15073#4 ------------------------------------------------------------
consensus_15073#3 ------------------------------------------------------------
consensus_15073#0 TTATCGGGCAATCTTATTGGGAATAACAAGGGTTTCCCTGAATACCCAAAGTTTCATATC 240
consensus_15073#2 TTATCGGGCAATTTTATTGGGAATAACAAAGGTTTCCCTGAATACCCAAAGTTTTATATC 100
consensus_15073#5 ------------------------------------------------------------
consensus_15073#1 TAGGTGAAGGGCCGAGCCAAGGGGACCAAGGGTTTCCCTGAATCCCCAAAGTTTCATATT 103
consensus_15073#4 ------------------------------------------------------------
consensus_15073#3 ------------------------------------------------------------
consensus_15073#0 TGAAGCAAGTTTTCAAGAAACTGCTCGAGTTTTAGCAAAAGCTGCCTTACGAGGTCGTAT 300
consensus_15073#2 TGAAGCAAGTTTTCAACAAACTGCTCGAGTTTTAGCAAAAACTGCCCTCCGAGGTTGTAT 160
consensus_15073#5 ------------------------------------------------------------
consensus_15073#1 TGAACCAGGTTTTCAAGAAACTGCTCGAGTTTTACCAAAAGCTCCCTTCCGAGGTGGTAT 163
consensus_15073#4 ------------------------------------------------------------
consensus_15073#3 ------------------------------------------------------------
consensus_15073#0 TGATTGGTTGAAAGGCCTGAAAGAAAACGTAGTTCTGGGGGGGATTATACCTGTTGGTAC 360
consensus_15073#2 TGATTGGTTGAAAGGCCTGAAAAAAAACGTAGTTCTGGGGGGGATTATACCTGTTGGTAC 220
consensus_15073#5 ------------------------------------------------------------
consensus_15073#1 TGATTGGTTGAAAGGCCTGAAAAAAAAGGTAGTTTTGGGGGGGATTATCCCTGTTGGTCC 223
consensus_15073#4 ------------------------------------------------------------
consensus_15073#3 ---------GGGAAGATTGGTACGAGATGATGT---GTGTGCGTGTGTGCCTGCCCATGC 48
consensus_15073#0 CGGATTCCAAAAATTTGTGCACCGTTACCCACAAAACAAGAACCTTTATTTCGAAATTCA 420
consensus_15073#2 CGGATTCCAAAAATTTGTGCCCCGTTACCCCCAAGACAAGAACCTTTATTTTGAAATTCA 280
consensus_15073#5 ------------------------------------------------------------
consensus_15073#1 CGGATTCCAAAAATTTGTGCCCCGTTACCCCCAAGCCAAGACCCTTTTTTTCGAAATTCA 283
consensus_15073#4 ------------------------------------------------------------
consensus_15073#3 CAAGGA--AAATGTAGGTGTTGCTGTGCTGATTTGCTGACGTGACACCTACCATGTGTCT 106
consensus_15073#0 AAAAAAAAAA-CTATTTGCGTCGGAAATGAGAGATATTTTGTTTCTCCATACAGAATTAG 479
consensus_15073#2 AAAAAAAAA--CTATTTGCGTTGGAAATGAGAGATATTTTGTTTCTCCATACAGAATTAG 338
consensus_15073#5 ---AAAAAAA-CTATTGCGCTCGGAAATGAGAGATATTTTGTTTCTCCATACAGAATTAG 56
consensus_15073#1 AAAAAAAAAATCTTTTTGCGTTGGAAATGAGAGATATTTTGTTTCCCCACACAGAATTAG 343
consensus_15073#4 --------------------------------GATATTTTGTTTCTCCATACAGAATTAG 28
consensus_15073#3 GATGGAAGA------CCATGCAGGAAATGCAACCATGTGTGACCCCCCATGTGTGATGA- 159
* ** * *** ** *
consensus_15073#0 TTTCT-TCTGATTC--TGACGTAACAAACA-ATTTCTATG-AGACAT-CAGAATCACC-- 531
consensus_15073#2 TTTTT-TCTGATTT--TGACGTAACAAACA-ATTTTTATG-AGACAT-CAGAATCCCC-- 390
consensus_15073#5 TTTCT-TCTGATTC--TGACGTAACAAACACATTTCTATGGAGACCT-CAGAATCACCA- 111
consensus_15073#1 TTTTT-TGTGTTTT--TGGCGTCACACACA-ATTTTTTTG-AGACCT-CAGAATCCCC-- 395
consensus_15073#4 TTTCTGTCTGGATTGCTGACGTAACTAACCATTTCCTATG-AGACATGCAGAATCACCAT 87
consensus_15073#3 ------TGGATGTT--GAAAGGGATGACCA-------ATGGAAAG---CAGGATG----- 196
* * * * * ** * * *** **
consensus_15073#0 ATTTACCCCATTTAT-----ATGATTTAAGGATACAT-AAAGCAGATTTT---TTACTTT 582
consensus_15073#2 CTTTACCCCATTTAT-----ATGATTTAAGGATACAT-AAAGCAGATTTT---TTACTTT 441
consensus_15073#5 CTTTACCCCATTTAT-----ATGATTTAAGGATACAT-AA--CCGATTTT---TTACTTT 160
consensus_15073#1 CTTTCCCCCTTTTAT-----TTGTTTTAGGGATACAT-AAAGCAGTTTTT---TCTCTTT 446
consensus_15073#4 GTTGACCCCATGTGTGATGATGGATTTAAGGATACATGAAAGCAGATTTTGTGTGACTTT 147
consensus_15073#3 --TTGTGGTGACTGT-----TGAAACTGAGGATGTGT--GTGTGGACCTTGA-GCACGCT 246
* * * * **** * * ** * *
consensus_15073#0 -AAACT-AGATT--TTTGACCTTAGAACGCTAA--GAGGTTAGATTTTC-----TATTTT 631
consensus_15073#2 -AAACT-AGATT--TTTGACCTTAGAACGCTAA--GAGGTTAGATTTTC-----TATTTT 490
consensus_15073#5 -AAACT-AGATT--TT-GACCTTAGAAC-CTAA--GAG-TTAGATTTTC-----TATTCT 206
consensus_15073#1 -AAACT-AGATT--TTTGCCCTTAGAACGCTAA--GGGGTTAGATTTTC-----TATTTT 495
consensus_15073#4 GAAACTGAGATTGTTTGGACCTTAGAACGCTGAACGAGGTTAGATTGTTGCTGATTTTTA 207
consensus_15073#3 GAAAGGAGGGTT-----GAGGATGTGTTGCTGATTGTG-TGTGATGTGT---------TG 291
*** * ** * * ** * * * * ***
consensus_15073#0 TATTTTAAT-TTA-AAAAGAAGT-TTAGTTAATTC-ATTAAGGTTATGCTTATACCATGT 687
consensus_15073#2 TATTTTAAT-TTA-AAAAGAAGT-TTAGTTAATTC-ATTAAGGTTATGCTTATACCATGT 546
consensus_15073#5 TATTTTAAT-TTACAAAAGAAGT-TTATTAAATTC-ATTAAG-TTATCCTTATACCATGT 262
consensus_15073#1 TATTTTAAT-TTA-AAAAAGAGT-TTAGTTTTCTC-TTTAAGGTTGTGCTTATCCCGTGT 551
consensus_15073#4 TGTTTGAATGTTGAAAAAGAAGT-TTAGTTAATTCCATTAAGGTTATGCTTATACCATGT 266
consensus_15073#3 AATGTTGAG---AAAAAGGAAGTGTTAGTTAATTC-ATTAAGGTTATGCTTATACCATGT 347
* * * *** *** *** * ** ***** ** * ***** ** ***
consensus_15073#0 AGAAGGTTCCATCGGAACAATTATTATTTATTTCAAGCTATTTCGGCTCTTTCTTAATCT 747
consensus_15073#2 AGAAGGTTCCATCGGAACAATTATTATTTATTTCCAGCTATTTCGGCTCTTTTTTAATCT 606
consensus_15073#5 AGAAG--TCCATCGACA---TTATTATTTATTTCAACCTATTTCGCCTCTTTCTTAATCT 317
consensus_15073#1 AAGGGGTTCCCTCGGCACAATTTTTTTTTTTTTCAAGCTATTGGGGCTCTTTTTTTATTT 611
consensus_15073#4 AGAAGGTTCCATCGGAACA-TTATTATTTATTTCAAGCTATTTCGGCTCTTTCTTAATCT 325
consensus_15073#3 AGAAGGTTCCATCGGAACAATTATTATTTATTTCAAGCTATTTCGGCTCTTTCTTAATCT 407
* * *** *** * ** ** *** **** * ***** * ****** ** ** *
consensus_15073#0 TCGAAAAG-AAAGAAATTTCGTAATGGAAAGGTAGGATGAAAAAAAAAAAAAAATCAAAA 806
consensus_15073#2 TCGAAAAG-AAAGAAATTTTGTAATGGAAAGGTAGGATGAAAAAAAAAAAAAAAA----- 660
consensus_15073#5 TCGAAAAG-AAAGAACTTTCGTAATGGAAAG-TAGGATGAAAAA---------------- 359
consensus_15073#1 TCAAAAAA-AAAAAAATTTTGTAATGGAAAGGTGGGGTGAAAAAAAAAAAAA-------- 662
consensus_15073#4 TCGAAAAG-ACAGAAATTTCGTAATGGAAAGGTAGGATGAAAAAAAA------------- 371
consensus_15073#3 TCGAAAAGCAAAGAAATTTCGTAATGGAAAGGTAGGATGAAAAA---------------- 451
** **** * * ** *** *********** * ** *******
consensus_15073#0 GGAAGTGTGGAAAAAATGACAAGAAGATATTGGAACATCAATTTGAAAGAGATGATAGAA 866
consensus_15073#2 ------------------------------------------------------------
consensus_15073#5 ------------------------------------------------------------
consensus_15073#1 ------------------------------------------------------------
consensus_15073#4 ------------------------------------------------------------
consensus_15073#3 ------------------------------------------------------------
consensus_15073#0 GCGGGAGTTCATTTTGGTCATGGTATTAAGAAATGGAATCCTAAAATGGCCCCTTACATC 926
consensus_15073#2 ------------------------------------------------------------
consensus_15073#5 ------------------------------------------------------------
consensus_15073#1 ------------------------------------------------------------
consensus_15073#4 ------------------------------------------------------------
consensus_15073#3 ------------------------------------------------------------
consensus_15073#0 TCGGCAAAGCGTAAAGGTACTCATATTACAAATCTCGCTAGAACCACCCGTTTTTTATCA 986
consensus_15073#2 ------------------------------------------------------------
consensus_15073#5 ------------------------------------------------------------
consensus_15073#1 ------------------------------------------------------------
consensus_15073#4 ------------------------------------------------------------
consensus_15073#3 ------------------------------------------------------------
consensus_15073#0 GAAGCTTGTGATTTAGTTTTTGATGCAGCAAGTCAGGGAAAAAGCTTCTTAATTGTTGGT 1046
consensus_15073#2 ------------------------------------------------------------
consensus_15073#5 ------------------------------------------------------------
consensus_15073#1 ------------------------------------------------------------
consensus_15073#4 ------------------------------------------------------------
consensus_15073#3 ------------------------------------------------------------
consensus_15073#0 ACCAAAAAAAGAGCAGCGGATTTAGTAGCATCAGCTGCAATAAGGGCTCGTTGTCATTAT 1106
consensus_15073#2 ------------------------------------------------------------
consensus_15073#5 ------------------------------------------------------------
consensus_15073#1 ------------------------------------------------------------
consensus_15073#4 ------------------------------------------------------------
consensus_15073#3 ------------------------------------------------------------
consensus_15073#0 GTTAATAAAAAGTGGTTCAGTGGTATGTTAACGAATTGGTCGATTACTAAAACTAGACTT 1166
consensus_15073#2 ------------------------------------------------------------
consensus_15073#5 ------------------------------------------------------------
consensus_15073#1 ------------------------------------------------------------
consensus_15073#4 ------------------------------------------------------------
consensus_15073#3 ------------------------------------------------------------
consensus_15073#0 TCTCAATTTAGAGACTTAAGAGCAGAAGAAAAGATGGAAAAATTCCACCATCTCCCAAAA 1226
consensus_15073#2 ------------------------------------------------------------
consensus_15073#5 ------------------------------------------------------------
consensus_15073#1 ------------------------------------------------------------
consensus_15073#4 ------------------------------------------------------------
consensus_15073#3 ------------------------------------------------------------
consensus_15073#0 AGAGATGTGGCAATCTTGAAGAGAAAATTATCTACC 1262
consensus_15073#2 ------------------------------------
consensus_15073#5 ------------------------------------
consensus_15073#1 ------------------------------------
consensus_15073#4 ------------------------------------
consensus_15073#3 ------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||