These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15074#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1185 fasta sequence [GAAGAGAAAGCCAAGCACACACACCACCAGCTTTGCTCCCGCTAGTTCCCGCTGATCGATCTTTTTTCGGGAGGGCGTTGCTTGCTCGGATCGGCGGCCATGGCTGAGCCCGCTGGGGAGGCGGCCCCGCAGGCGGACGGCGTCTCGGAGGAGGCGGCGGCGAGGCCGAGGGGGTTTAGGCTTCTTGGGGGGGACAAGTCCGTGCACCAGGCTCTCGGCGGTGGTAAAGCTGCTGATGTACTTTTGTGGAAAGACAAGAAGATCTCTGCTGCAGTGATAGGTGGCGCAACTGTGTTGTGGGTTCTCTTTGAAGTTGTTGATTACCATTTCCTCACTCTGATATCTCATGTCC-TGATCGGTGTACTGGCCATCTTGTT-CTTATGGTCCAAGGCAACCATCTTCATCAAGAAGAGTCCACCTAATATTCCAGAAGTGAAGATATCTGAAGATCTTGCTGTGAATGTTGCACTAGCACTGCGCACTGACATC-AACCAAGCACTT-CACTTGCTTCGGGAGATTTCTCTAGGGCATGACCTGATGAAGTTTTTAGGCGTG-ATCGTTGCTCTCTGGATTCTTTCTGAAATTGGAAGCCTCTGTGATTTCCTGACCCTGTTTTACGTTGCTGTCTTGATGCTCCATACAGTGCCGATCTTGTATCACAAGTATCAGGACAAGGTTGATCATTTTGCTGGGAAGGCGCATGTGGAACTCAGCAGGCAGTACTCTGTTCTCGACGCAAAGGTTCTCAGCAAGATACCTAGGGGTCCAGCAAAAGATAAGAAGCAGAACTAGAAATGAAACACCATATCACGCTGGAACCTGACTTGGGAGTGTTGGCATCTCACATCACAACATATG-CATGAATCTTGAGT-CCTTGACTTGGTTTGGCCCTTGTTGGTGCTTGGTACATATATGACCTGTCTGTAGATTTGTGTGTTGGGAGTGTCTTGTGTAGTAAA-CTGTCGATATGATGTGGTTGGTGTGCAACTCTGCAATGTTAATATA-CAAGATCTTGCTGCAAGCCTGCAACCATATATGATATACGTACAAGGACTCCATACCTATAATTTACGTTAGTGTGGTTGTAATGTAGATCGTGCTCAAGTAATTGTAAAGTGCTGTGGTTCTTTCTTAAAAAAAAAAAAGTAATTCTCAGTTCTTGTTACTTTTAGTTTGGTTAAAAAA] [+] EMBL AK059921 [GAAGAGAAAGCCAAGCACACACACCACCAGCTTTGCTCCCGCTAGTTCCCGCTGATCGATCTTTTTTCGGGAGGGCGTTGCTTGCTCGGATCGGCGGCCATGGCTGAGCCCGCTGGGGAGGCGGCCCCGCAGGCGGACGGCGTCTCGGAGGAGGCGGCGGCGAGGCCGAGGGGGTTTAGGCTTCTTGGGGGGGACAAGTCCGTGCACCAGGCTCTCGGCGGTGGTAAAGCTGCTGATGTACTTTTGTGGAAAGACAAGAAGATCTCTGCTGCAGTGATAGGTGGCGCAACTGTGTTGTGGGTTCTCTTTGAAGTTGTTGATTACCATTTCCTCACTCTGATATCTCATGTCC TGATCGGTGTACTGGCCATCTTGTT CTTATGGTCCAAGGCAACCATCTTCATCAAGAAGAGTCCACCTAATATTCCAGAAGTGAAGATATCTGAAGATCTTGCTGTGAATGTTGCACTAGCACTGCGCACTGACATC AACCAAGCACTT CACTTGCTTAGGGAGATTTCTCTAGGGCATGACCTGATGAAGTTTTTAGGCGTG ATCGTTGCTCTCTGGATTCTTTCTGAAATTGGAAGCCTCTGTGATTTCCTGACCCTGTTTTACGTTGCTGTCTTGATGCTCCATACAGTGCCGATCTTGTATCACAAGTATCAGGACAAGGTTGATCATTTTGCTGGGAAGGCGCATGTGGAACTCAGCAGGCAGTACTCTGTTCTCGACGCAAAGGTTCTCAGCAAGATACCTAGGGGTCCAGCAAAAGATAAGAAGCAGAACTAGAAATGAAACACCATATCACGCTGGAACCTGACTTGGGAGTGTTGGCATCTCACATCACAACATATG CATGAATCTTGAGT CCTTGACTTGGTTTGGCCCTTGTTGGTGCTTGGTACATATATGACCTGTCTGTAGATTTGTGTGTTGGGAGTGTCTTGTGTAGTAAA CTGTCGATATGATGTGGTTGGTGTGCAACTCTGCAATGTTAATATA CAAG ] [+] EMBL AU068752 [ ACACACACCACCAGCTTTGCTCCCGCTAGTTCCCGCTGATCGATCTTTTTTCGGGAGGGCGTTGCTTGCTCGGATCGGCGGCCATGGCTGAGCCCGCTGGGGAGGCGGCCCCGCAGGCGGACGGCGTCTCGGAGGAGGCGGCGGCGAGGCCGAGGGGGTTTAGGCTTCTTGGGGGGGACAAGTCCGTGCACCAGGCTCTCGGCGGTGGTAAAGCTGCTGATGTACTTTTGTGGAAAGACAAGAAGATCTCTGCTGCAGTNATAGGTGGCG AACTGTGTTGTGGGTTCTCTTTGAAGTTGTTNATTACCATTTCCTCACTCTGATATCTCATGTCCTTNATCGGTGTACTGGCCATCTTGTT CTT ] [+] EMBL AY164900 [ ACACACACCACCAGCTTTGCTCCCGCTAGTTCCCGCTGATCGATCTTTTTTCGGGAGGGCGTTGCTTGCTCGGATCGGCGGCCATGGCTGAGCCCGCTGGGGAGGCGGCCCCGCAGGCGGACGGCGTCTCGGAGGAGGCGGCGGCGAGGCCGAGGGGGTTTAGGCTTCTTGGGGAGGACAAGTCCGTGCACCAGGCTCTCGGCGGTGGTAAAGCTGCTGATGTACTTTTGTGGAAAGACAAGAAGATCTCTGCTGCAGTGATAGGTGGCGCAACTGTGTTGTGGGTTCTCTTTGAAGTTGTTGATTACCATTTCCTCACTCTGATATCTCATGTCC TGATCGGTGTACTGGCCATCTTGTT CTTATGGTCCAAGGCAACCATCTTCATCAAGAAGAGTCCACCTAATATTCCAGAAGTGAAGATATCTGAAGATCTTGCTGTGAATGTTGCACTAGCACTGCGCACTGACATC AACCAAGCACTT CACTTGCTTCGGGAGATTTCTCTAGGGCATGACCTGATGAAGTTTTTAGGCGTG ATCGTTGCTCTCTGGATTCTTTCTGAAATTGGAAGCCTCTGTGATTTCCTGACCCTGTTTTACGTTGCTGTCTTGATGCTCCATACAGTGCCGATCTTTTATCACAAGTATCAGGACAAGGTTGATCATTTTGCTGGGAAGGCGCATGTGGAACTCAGCAGGCAGTACTCTGTTCTCGACGCAAAGGTTCTCAGCAAGATACCTAGGGGTCCAGCAAAAGATAAGAAGCAGAACTAGAAATGAAACACCATATCACCCTGGAACCTG ] [+] EMBL AU165546 [ TTTGCTCCCGCTAGTTCCCGCTGATCGATCTTTTTTCGGGAGGGCGTTGCTTGCTCGGATCGGCGGCCATGGCTGAGCCCGCTGGGGAGGCGGCCCCGCAGGCGGACGGCGTCTCGGAGGAGGCGGCGGCGAGGCCGAGGGGGTTTAGGCTTCTTGGGGGGGACAAGTCCGTGCACCAGGCTCTCGGCGGTGGTAAAGCTGCTGATGTACTTTTGTGGAAAGACAAGAAGATCTCTGCTGCAGTGATAGGTGGCGCAACTGTGTTGTGGGTTCTCTTTGAAGTTGTTGATTACCATTTCCTCACTCTGATATCTCATGTCC TGATCGGTGTACTGGCCATCTTGTTCCTAATGGTCCAAGGCAACCATCTTCATCAAGAAGAGTCCACCTAATATTCCAGAAGTGAAGATATCTGAAGATCTTGCTGTGAAT ] [+] EMBL CF277603 [ TAGTTCCCGCTGATCGATCTTTTTTCGGGAGGGCGTTGCTTGCTCGGATCGGCGGCCATGGCTGAGCCCGCTGGGGAGGCGGCCCCGCAGGCGGACGGCGTCTCGGAGGAGGCGGCGGCGAGGCCGAGGGGGTTTAGGCTTCTTGGGGGGGACAAGTCCGTGCACCAGGCTCTCGGCGGTGGTAAAGCTGCTGATGTACTTTTGTGGAAAGACAAGAAGATCTCTGCTGCAGTGATAGGTGGCGCAACTGTGTTGTGGGTTCTCTTTGAAGTTGTTGATTACCATTTCCTCACTCTGATATCTCATGTCC TGATCGGTGTACTGGCCATCTTGTT CTTATGGTCCAAGGCAACCATCTTCATCAAGAAGAGTCCACCTAATATTCCAGAAGTGAAGATATCTGAAGATCTTGCTGTGAATGTTGCACTAGCACTGCGCACTGACATC AACCAAGCACTT CACTTGCTTCGGGAGATTTCTCTAGGGCAT ] [+] EMBL CA755342 [ TAGTTCCCGCTGATCGATCTTTTTTCGGGAGGGCGTTGCTTGCTCGGATCGGCGGCCATGGCTGAGCCCGCTGGGGAGGCGGCCCCGCAGGCGGACGGCGTCTCGGAGGAGGCGGCGGCGAGGCCGAGGGGGTTTAGGCTTCTTGGGGGGGACAAGTCCGTGCACCAGGCTCTCGGCGGTGGTAAAGCTGCTGATGTACTTTTGTGGAAAGACAAGAAGATCTCTGCTGCAGTGATAGGTGGCGCAACTGTGTTGTGGGTTCTCTTTGAAGTTGTTGATTACCATTTCCTCACTCTGATATCTCATGTCC TGATCGGTGTACTGGCCATCTTGTT CTTATGGTCCAAGGCAACCATCTTCATCAAGAAGAGTCCACCTAATATTCCAGAAGTGAAGATATCTGAAGATCTTGCTGTGAATGTTGCACTAGCACTGCGCACTGACATC AACCAAGCACTT CACTTGCTTCGGGAGATTTCTCTAGGGCATGACCTGATGAAGTTTTTAGGCGTG ATCGTTGCTCTCTGGATTCTTTCTGAAATTGGAAGCCTCTGTGATTTCCTGACCCTGTTTTACGTTGCTGTCTT ] [+] EMBL CF277492 [ TAGTTCCCGCTGATCGATCTTTTTTCGGGAGGGCGTTGCTTGCTCGGATCGGCGGCCATGGCTGAGCCCG ] [+] EMBL AK104196 [ CGCTGATCGATCTTTTTTCGGGAGGGCGTTGCTTGCTCGGATCGGCGGCCATGGCTGAGCCCGCTGGGGAGGCGGCCCCGCAGGCGGACGGCGTCTCGGAGGAGGCGGCGGCGAGGCCGAGGGGGTTTAGGCTTCTTGGGGGGGACAAGTCCGTGCACCAGGCTCTCGGCGGTGGTAAAGCTGCTGATGTACTTTTGTGGAAAGACAAGAAGATCTCTGCTGCAGTGATAGGTGGCGCAACTGTGTTGTGGGTTCTCTTTGAAGTTGTTGATTACCATTTCCTCACTCTGATATCTCATGTCC TGATCGGTGTACTGGCCATCTTGTT CTTATGGTCCAAGGCAACCATCTTCATCAAGAAGAGTCCACCTAATATTCCAGAAGTGAAGATATCTGAAGATCTTGCTGTGAATGTTGCACTAGCACTGCGCACTGACATC AACCAAGCACTT CACTTGCTTCGGGAGATTTCTCTAGGGCATGACCTGATGAAGTTTTTAGGCGTG ATCGTTGCTCTCTGGATTCTTTCTGAAATTGGAAGCCTCTGTGATTTCCTGACCCTGTTTTACGTTGCTGTCTTGATGCTCCATACAGTGCCGATCTTGTATCACAAGTATCAGGACAAGGTTGATCATTTTGCTGGGAAGGCGCATGTGGAACTCAGCAGGCAGTACTCTGTTCTCGACGCAAAGGTTCTCAGCAAGATACCTAGGGGTCCAGCAAAAGATAAGAAGCAGAACTAGAAATGAAACACCATATCACGCTGGAACCTGACTTGGGAGTGTTGGCATCTCACATCACAACATATG CATGAATCTTGAGT CCTTGACTTGGTTTGGCCCTTGTTGGTGCTTGGTACATATATGACCTGTCTGTAGATTTGTGTGTTGGGAGTGTCTTGTGTAGTAAA CTGTCGATATGATGTGGTTGGTGTGCAACTCTGCAATGTTAATATA CAAGATCTTGCTGCAAGC ] [+] EMBL AK072628 [ GAGGGGGTTTAGGCTTCTTGGGGGGGACAAGTCCGTGCACCAGGCTCTCGGCGGTGGTAAAGCTGCTGATGTACTTTTGTGGAAAGACAAGAAGATCTCTGCTGCAGTGATAGGTGGCGCAACTGTGTTGTGGGTTCTCTTTGAAGTTGTTGATTACCATTTCCTCACTCTGATATCTCATGTCC TGATCGGTGTACTGGCCATCTTGTT CTTATGGTCCAAGGCAACCATCTTCATCAAGAAGAGTCCACCTAATATTCCAGAAGTGAAGATATCTGAAGATCTTGCTGTGAATGTTGCACTAGCACTGCGCACTGACATC AACCAAGCACTT CACTTGCTTCGGGAGATTTCTCTAGGGCATGACCTGATGAAGTTTTTAGGCGTG ATCGTTGCTCTCTGGATTCTTTCTGAAATTGGAAGCCTCTGTGATTTCCTGACCCTGTTTTACGTTGCTGTCTTGATGCTCCATACAGTGCCGATCTTGTATCACAAGTATCAGGACAAGGTTGATCATTTTGCTGGGAAGGCGCATGTGGAACTCAGCAGGCAGTACTCTGTTCTCGACGCAAAGGTTCTCAGCAAGATACCTAGGGGTCCAGCAAAAGATAAGAAGCAGAACTAGAAATGAAACACCATATCACGCTGGAACCTGACTTGGGAGTGTTGGCATCTCACATCACAACATATG CATGAATCTTGAGT CCTTGACTTGGTTTGGCCCTTGTTGGTGCTTGGTACATATATGACCTGTCTGTAGATTTGTGTGTTGGGAGTGTCTTGTGTAGTAAA CTGTCGATATGATGTGGTTGGTGTGCAACTCTGCAATGTTAATATA CAAGATCTTGCTGCAAGCCTGCA ] [+] EMBL CB683394 [ GGGGCTTAGGCTTCTTGGGGGGGACAAGTCCGTGCACCAGGCTCTCGGCGGTGGTAAAGCTGCTGATGTACTTTTGTGGAAAGACAAGAAGATCTCTGCTGCAGTGATAGGTGGCGCAACTGTGTTGTGGGTTCTCTTTGAAGTTGTTGATTACCATTTCCTCACTCTGATATCTCATGTCC TGATCGGTGTACTGGCCATCTTGTT CTTATGGTCCAAGGCAACCATCTTCATCAAGAAGAGTCCACCTAATATTCCAGAAGTGAAGATATCTGAAGATCTTGCTGTGAATGTTGCACTAGCACTGCGCACTGACATC AACCAAGCACTT CACTTGCTTCGGGAGATTTCTCTAGGGCATGACCTGATGAAGTTTTTAGGCGTG ATCGTTGCTCTCTGGATTCTTTCTGAAATTGGAAGCCTCTGTGATTTCCTGACCCTGTTTTACGTTGCTGTCTTGATGCTCCATACAGTGCCGATCTTGTATCACAAGTATCAGGACAAGGTTGATCATTTTGCTGGGAAGGCGCATGTGGAACTCAGCAGGCAGTACTCTGTTCTCGACGCAAAGGTTCTCAGCAAGATACCTAGGGGTCCAGCAAAAGATAAGAAGCAGAACTAGAAATGAAACACCATATCACGCTGGAACCTGACTTGGGAGTGTTGGCATCTCACATCACAACATATG CATGAATCTTGAGT CCTTGACTTGGTTTGGCCCTTGTTGGTGCTTGGTACATATATGACCTGTCTGTAAATTTGTGTNGTGGGAG ] [+] EMBL CF306542 [ ACCAGGCTCTCGGCGGTGGTAAAGCTGCTGATGTACTTTTGTGGAAAGACAAGAAGATCTCTGCTGCAGTGATAGGTGGCGCAACTGTGTTGTGGGTTCTCTTTGAAGTTGTTGATTACCATTTCCTCACTCTGATATCTCATGTCC TGATCGGTGTACTGGCCATCTTGTT CTTATGGTCCAAGGCAACCATCTTCATCAAGAAGAGTCCACCTAATATTCCAGAAGTGAAGATATCTGAAGATCTTGCTGTGAATGTTGCACTAGCACTGCGCACTGACATC AACCAAGCACTT CACTTGCTTCGGGAGATTTCTCTAGGGCATGACCTGATGAAGTTTTTAGGCGTG ATCGTTGCTCTCTGGATTCTTTCTGAAATTGGAAGCCTCTGTGATTTCCTGACCCTGTTTTACGTTGCTGTCTTGATGCTCCATACAGTGCCGATCTTGTATCACAAGTATCAGGACAAGGTTGATCATTTTGCTGGGAAGGCGCATGT ] [+] EMBL AU165547 [ ACTGACATCAAACCAAGCATTTCCACTTGCTNCGGGAGATTTCTCTAGGGCATGACCTGATGAAGTTTTTAGGCGTGAATCGTTGCTCTCTGGATTCTTTCTGAAATTGGAAGCCTCTGTGATTTCCTGACCCTGTTTTACGTTGCTGTCTTGATGCTCCATACAGTGCCGATCTTGTATCACAAGTATCAGGACAAGGTTGATCATTTTGCTGGGAAGGCGCATGTGGAACTCAGCAGGCAGTACTCTGTTCTCGACGCAAAGGTTCTCAGCAAGATACCTAGGGGTCCAGCAAAAGATAAGAAGCAGAACTAGAAATGAAACACCATATCACGCTGGAACCTGACTTGGGAGTGTTGGCATCTCACATCACAACATATG CATGAATCTTGAGT CCTTGACTTGGTTTGGCCCTTGTTGGTGCTTGGTACATATATGACCTGTCTGTAGATTTGTGTGTTGGGAGTGTCTTGTGTAGTAAA CTGTCGATATGATGTGGTTGGTGTGCAACTCTGCAATGTTAATATA CAAGATCTTGCTGCAAGCCTGCAACCATATATGATATACGTACAAGGACTCCATACCTATAAaaa ] [-] EMBL CF277604 [ AAGCACTT CACTTGCTTCGGGAGATTTCTCTAGGGCATGACCTGATGAAGTTTTTAGGCGTG ATCGTTGCTCTCTGGATTCTTTCTGAAATTGGAAGCCTCTGTGATTTCCTGACCCTGTTTTACGTTGCTGTCTTGATGCTCCATACAGTGCCGATCTTGTATCACAAGTATCAGGACAAGGTTGATCATTTTGCTGGGAAGGCGCATGTGGAGCTCAGCAGGCAGTACTCTGTTCTCGACGCAAAGGTTCTCAGCAAGATACCTAGGGGTCCAGCAAAAGATAAGAAGCAGAACTAGAAATGAAACACCATATCACGCTGGAACCTGACTTGGGAGTGTTGGCATCTCACATCACAACATATG CATGAATCTTGAGT CCTTGACTTGGTTTGGCCCTTGTTGGTGCTTGGTACATATATGACCTGTCTGTAGATTTGTGTGTTGGGAGTGTCTTGTGTAGTAAA CTGTCGATATGATGTGGTTGGTGTGCAACTCTGCAATGTTAATATA AAAa ] [+] EMBL BI796127 [ gggTAGAAATGAAACACCATATCACCCTGGAACCTGACTTGGGAGTGTTGGCATCTCACATCACAACATATG CATGAATCTTGAGT CCTTGACTTGGTTTGGCCCTTGTTGGTGCTTGGTACATATATGACCTGTCTGTAGATTTGTGTGTTGGGAGTGTCTTGTGTAGTAAACCTGTCGATATGATGTGCTTGGTGTGCAACTCTGCAATGTTAATATACCCAGATCTTGCTGCAAGCCTGCAACCATATATGATATACGTACAAGGACTCCATACCTATAATTTACGTTAGTGTGGTTGTAATGTAGATCGTGCTCAAGTAATTGTAAAGTGCTGTGGTTCTTTCTTAAAAAAAAAA ] [+] EMBL C96626 [ ACAACATATGCCATGAATCTTGAGTCCCTTGACTTGGTTTGGCCCTTGTTGGTGCTTGGTACATATATGACCTGTCTGTAGATTTGTGTGTTGGGNGTGTCTTGTGTNGTAAA CTGTCGATATGATGTGGTTGGTGTGCAACTCTGCAATGTTAATATA CAAGATCTTGCTGCAAGCCTGCAACCATATATGATATACGTACAAGGACTCCATACCTATAATTTACGTTAGTGTGGTTGTAATGTNGATCGTGCTCAAGTAATTGTAAAGTGCTGTGGTTCTTTCTTATATCGCTCCAAGTAATTCTCAGTTCTTGTTACTTTTAGTTTGGTTAAAAAA] consensusID : consensus_15074#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1166 fasta sequence [GAAAGCCAAGCACACACACCACCAGCTTTGCTCCCGCTAGTTCCCGCTGATCGATCTTTTTTCGGGAGGGCGTTGCTTGCTCGGATCGGCGGCCATGGCTGAGCCCGCTGGGGAGGCGGCCCCGCAGGCGGACGGCGTCTCGGAGGAGGCGGCGGCGAGGCCGAGGGGGTTTAGGCTTCTTGGGGGGGACAAGTCCGTGCACCAGGCTCTCGGCGGTGGTAAAGGTAAGTGTGAAATTCGTGCGTTTTCTTTGTCTCGGGGTGTAGATTGCTCGTTTAGGGCAGGAATTGTGTCCGGATTGTGTGCTGTTCCTCTCTGTGTTAATCAGTAGGGTTCTTGAGGTGGATATAATAATTGCGTGGCTTTGCCTTTGATTATCGAGCTCTTGAGTAGCGGGTAGGTAGGTATACTTCAGTTGAGTTGTTGGCGTTTAGGCCTGATTAACCAAATTGATTTGGATGATTATCTAAGAAGCAAAATTGGCTTTGATTCTGAAGAATTCTAAGCTGAATTAGCTTCTTTCCCATCCTAGAATTAATGGTTATAGTTGTTTGTTCTTCTTGAAAAGCACAAGGGCCATGTGAACTCCTCAAACTTTTCTTCTGTGTTGGTGGAAATTAATCTTCGTTTTGTTTATGTTGTTATTTAATTCCATGTACCTGATCAATCATATACTGCTGGTTGAAACGGAGCTAGTTATGGTGTTTTAATCAAACGGCGGGATTTTCCTCGCCTGCAGACAGTATTTGTTCACAAAATCATCGGAGAGGGAGTATATTTTGTGGCTTGGTTATCCGGTACAGAGTTATACCAATAACCATCTGAAAGCTTCTAGAAAACATTAAAATTAGGCAAACCATAATAAATTAGGGAAACCATAAGTGTATGAATATTTAATCGGCGTCATACGGACAATTTGTCTTGTGTTCATAAACATAAGAATGTTAAGTTACCAATCGTTAGCTCCTTCCAAACTCCAGAAGTTCTGTTACTTTCATAAACCAAATCATGAATCACTAGAAAATACAAATGAAAATGGTTTTAGCAATTTGGAATTTTTGAGCAAAGAGTTCAAAGGGGAGAAATTCATTGTCCTGTTAGATGTGTTTCATGAGGAGGATAGGATGACAATTGTGAATTGTAGGAAAGGTTAGAGAGCATATCAT] [+] EMBL AK064290 [GAAAGCCAAGCACACACACCACCAGCTTTGCTCCCGCTAGTTCCCGCTGATCGATCTTTTTTCGGGAGGGCGTTGCTTGCTCGGATCGGCGGCCATGGCTGAGCCCGCTGGGGAGGCGGCCCCGCAGGCGGACGGCGTCTCGGAGGAGGCGGCGGCGAGGCCGAGGGGGTTTAGGCTTCTTGGGGGGGACAAGTCCGTGCACCAGGCTCTCGGCGGTGGTAAAGGTAAGTGTGAAATTCGTGCGTTTTCTTTGTCTCGGGGTGTAGATTGCTCGTTTAGGGCAGGAATTGTGTCCGGATTGTGTGCTGTTCCTCTCTGTGTTAATCAGTAGGGTTCTTGAGGTGGATATAATAATTGCGTGGCTTTGCCTTTGATTATCGAGCTCTTGAGTAGCGGGTAGGTAGGTATACTTCAGTTGAGTTGTTGGCGTTTAGGCCTGATTAACCAAATTGATTTGGATGATTATCTAAGAAGCAAAATTGGCTTTGATTCTGAAGAATTCTAAGCTGAATTAGCTTCTTTCCCATCCTAGAATTAATGGTTATAGTTGTTTGTTCTTCTTGAAAAGCACAAGGGCCATGTGAACTCCTCAAACTTTTCTTCTGTGTTGGTGGAAATTAATCTTCGTTTTGTTTATGTTGTTATTTAATTCCATGTACCTGATCAATCATATACTGCTGGTTGAAACGGAGCTAGTTATGGTGTTTTAATCAAACGGCGGGATTTTCCTCGCCTGCAGACAGTATTTGTTCACAAAATCATCGGAGAGGGAGTATATTTTGTGGCTTGGTTATCCGGTACAGAGTTATACCAATAACCATCTGAAAGCTTCTAGAAAACATTAAAATTAGGCAAACCATAATAAATTAGGGAAACCATAAGTGTATGAATATTTAATCGGCGTCATACGGACAATTTGTCTTGTGTTCATAAACATAAGAATGTTAAGTTACCAATCGTTAGCTCCTTCCAAACTCCAGAAGTTCTGTTACTTTCATAAACCAAATCATGAATCACTAGAAAATACAAATGAAAATGGTTTTAGCAATTTGGAATTTTTGAGCAAAGAGTTCAAAGGGGAGAAATTCATTGTCCTGTTAGATGTGTTTCATGAGGAGGATAGGATGACAATTGTGAATTGTAGGAAAGGTTAGAGAGCATATCAT] consensusID : consensus_15074#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 553 fasta sequence [GGAGGAGGCGGCGGCGAGGCCGAGGGGGTTTAGGCTTCTTGGGGAGGACAAGTCCGTGCACCAGGCTCTCGGCGGTGGTAAAGCTGCTGATGTACTTTTGTGGAAAGACAAGAAGATCTCTGCTGCAGTGATAGGTGGCGCAACTGTGTTGTGGGTTCTCTTTGAAGTTGTTGATTACCATTTCCTCACTCTGATATCTCATGTCCTGATCGGTGTACTGGCCATCTTGTTCTTATGGTCCAAGGCAACCATCTTCATCAAGAAGAGTCCACCTAATATTCCAGAAGTGAAGATATCTGAAGATCTTGCTGTGAATGTTGCACTAGCACTGCGCACTGACATCAACCAAGCACTTCACTTGCTTCGGGAGATTTCTCTAGGGCATGACCTGATGAAGTTTTTAGGCGTGATCGTTGCTCTCTGGATTCTTTCTGAAATTGGAAGCCTCTGTGATTTCCTGACCCTGTTTTACGTTGCTGTCTTGATGCTCCATACAGTGCCGATCTTTTATCANNNNNNNNNNNNNNNGGTTGATCANNNNGCTGNNNNNNNN] [+] EMBL CF196918 [GGAGGAGGCGGCGGCGAGGCCGAGGGGGTTTAGGCTTCTTGGGGAGGACAAGTCCGTGCACCAGGCTCTCGGCGGTGGTAAAGCTGCTGATGTACTTTTGTGGAAAGACAAGAAGATCTCTGCTGCAGTGATAGGTGGCGCAACTGTGTTGTGGGTTCTCTTTGAAGTTGTTGATTACCATTTCCTCACTCTGATATCTCATGTCCTGATCGGTGTACTGGCCATCTTGTTCTTATGGTCCAAGGCAACCATCTTCATCAAGAAGAGTCCACCTAATATTCCAGAAGTGAAGATATCTGAAGATCTTGCTGTGAATGTTGCACTAGCACTGCGCACTGACATCAACCAAGCACTTCACTTGCTTCGGGAGATTTCTCTAGGGCATGACCTGATGAAGTTTTTAGGCGTGATCGTTGCTCTCTGGATTCTTTCTGAAATTGGAAGCCTCTGTGATTTCCTGACCCTGTTTTACGTTGCTGTCTTGATGCTCCATACAGTGCCGATCTTTTATCANNNNNNNNNNNNNNNGGTTGATCANNNNGCTGNNNNNNNN] [+] EMBL AA752351 [ TGGGTTCTCTTTGAAGTTGTTGATTACCATTTCCTCACTCTGATATCTCATGTCCTGATCGGTGTACTGGCCATCTTGTTCTTATGGTCAAAGGCAACCATCTTCATCAAGAAGAGTCCGCCTAGTATTCCAAAAGTGAAGATATCTGAAGATCTTGCTGTGAATGTTGCACTAGCACGGCGCACTGACATCGACCGGACACTTCACTTGCTTCGGGAGATTTCTCTACGGAATGAC ] consensusID : consensus_15074#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 178 fasta sequence [TGTAATGTAGATCGTGCTCAAGTAATTGTAAAGTGCTGTGGTTCTTTCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAACCCTTGCTTTCCGTTACCAAAAGGGCCAATTCCCCG] [+] EMBL CF312888 [TGTAATGTAGATCGTGCTCAAGTAATTGTAAAGTGCTGTGGTTCTTTCTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACAAAAACCCTTGCTTTCCGTTACCAAAAGGGCCAATTCCCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15074#0 GAAGAGAAAGCCAAGCACACACACCACCAGCTTTGCTCCCGCTAGTTCCCGCTGATCGAT 60 consensus_15074#2 ------------------------------------------------------------ consensus_15074#3 ------------------------------------------------------------ consensus_15074#1 -----GAAAGCCAAGCACACACACCACCAGCTTTGCTCCCGCTAGTTCCCGCTGATCGAT 55 consensus_15074#0 CTTTTTTCGGGAGGGCGTTGCTTGCTCGGATCGGCGGCCATGGCTGAGCCCGCTGGGGAG 120 consensus_15074#2 ------------------------------------------------------------ consensus_15074#3 ------------------------------------------------------------ consensus_15074#1 CTTTTTTCGGGAGGGCGTTGCTTGCTCGGATCGGCGGCCATGGCTGAGCCCGCTGGGGAG 115 consensus_15074#0 GCGGCCCCGCAGGCGGACGGCGTCTCGGAGGAGGCGGCGGCGAGGCCGAGGGGGTTTAGG 180 consensus_15074#2 --------------------------GGAGGAGGCGGCGGCGAGGCCGAGGGGGTTTAGG 34 consensus_15074#3 ------------------------------------------------------------ consensus_15074#1 GCGGCCCCGCAGGCGGACGGCGTCTCGGAGGAGGCGGCGGCGAGGCCGAGGGGGTTTAGG 175 consensus_15074#0 CTTCTTGGGGGGGACAAGTCCGTGCACCAGGCTCTCGGCGGTGGTAAAGCTGCTGATGTA 240 consensus_15074#2 CTTCTTGGGGAGGACAAGTCCGTGCACCAGGCTCTCGGCGGTGGTAAAGCTGCTGATGTA 94 consensus_15074#3 ------------------------------------------------------------ consensus_15074#1 CTTCTTGGGGGGGACAAGTCCGTGCACCAGGCTCTCGGCGGTGGTAAAGGTAAGTGTGAA 235 consensus_15074#0 CTTTTGTGGAAAGACAAGAAGATCTCTGCTGCAGTGATAGGTGGCGCAACTGTGTTGTGG 300 consensus_15074#2 CTTTTGTGGAAAGACAAGAAGATCTCTGCTGCAGTGATAGGTGGCGCAACTGTGTTGTGG 154 consensus_15074#3 ------------------------------------------------------------ consensus_15074#1 ATTC---------GTGCGTTTTCTTTGTCTCGGGGTGTAGATTGCTCGTTTAGGGCAGGA 286 consensus_15074#0 GTTCTCTTTGAAGTTGTTGATTACCATTTCCTCACTCTGATATCTCATGTCCTGATCGGT 360 consensus_15074#2 GTTCTCTTTGAAGTTGTTGATTACCATTTCCTCACTCTGATATCTCATGTCCTGATCGGT 214 consensus_15074#3 -----------------------------------------------------------T 1 consensus_15074#1 ATTGTGTCCGGATTGTGTG-----CTGTTCCTCTCTGTGTTAATCAGTA---GGGTTCTT 338 * consensus_15074#0 GTACTGGCCATCTTGTTC---TTA--TGGTCCAAGGCAACCATCTTCATCAAGAAGAGTC 415 consensus_15074#2 GTACTGGCCATCTTGTTC---TTA--TGGTCCAAGGCAACCATCTTCATCAAGAAGAGTC 269 consensus_15074#3 GTAATGTAGATCGTGCTCAAGTAA--TTGTAAAGTGCTGTGGTTCTTTCTTAAAAAAAAA 59 consensus_15074#1 GAGGTGGATATAATAATTGCGTGGCTTTGCCTTTGATTATCGAGCTCTTGAGTAGCGGGT 398 * ** ** * * * * * * * consensus_15074#0 CACCTAATATTCCAGAAGTGAAGATATCTGAAGATCTTGCTGTGAATGTTGCACTAGCAC 475 consensus_15074#2 CACCTAATATTCCAGAAGTGAAGATATCTGAAGATCTTGCTGTGAATGTTGCACTAGCAC 329 consensus_15074#3 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 119 consensus_15074#1 AGGTAGGTATACTTCAGTTGAG--TTGTTGGCGTTTAGGCCTGATTAACCAAATTGATTT 456 * * * * consensus_15074#0 TGCGCACTGACATCAACCAAGCACTTCACTTGCTTCGGGAGATTTCTCTAG-GGCATGAC 534 consensus_15074#2 TGCGCACTGACATCAACCAAGCACTTCACTTGCTTCGGGAGATTTCTCTAG-GGCATGAC 388 consensus_15074#3 AAAAAAAAAAAAAAAAACAAAAACC---CTTGCTTTCCG---TTACCAAAA-GGGCCAAT 172 consensus_15074#1 GGATGATTATCTAAGAAGCAAAATTGGCTTTGATTCTGAAGAATTCTAAGCTGAATTAGC 516 * * * * *** ** * * * consensus_15074#0 CTGATGAAGTTTTTAGGCGTGATCGTT---GCTCTCTGGATTCTTTCTGAAATTGGAAGC 591 consensus_15074#2 CTGATGAAGTTTTTAGGCGTGATCGTT---GCTCTCTGGATTCTTTCTGAAATTGGAAGC 445 consensus_15074#3 TCCCCG------------------------------------------------------ 178 consensus_15074#1 TTCTTTCCCATCCTAGAATTAATGGTTATAGTTGTTTGTTCTTCTTGAAAAGCACAAGGG 576 consensus_15074#0 CTCTGTGATTTCCTGACCCTGTTTTACGTTGCTGTCTTGA--TGCTCCATACAGTGCCGA 649 consensus_15074#2 CTCTGTGATTTCCTGACCCTGTTTTACGTTGCTGTCTTGA--TGCTCCATACAGTGCCGA 503 consensus_15074#3 ------------------------------------------------------------ consensus_15074#1 CCATGTGAACTCCTCAAACTTTTCTTCTGTGTTGGTGGAAATTAATCTTCGTTTTGTTTA 636 consensus_15074#0 TCTTGTATCACAAGTATCAGGACAAGGTTGATCATTTTGCTGGGAAGGCGCATGTGGAAC 709 consensus_15074#2 TCTTTTATCANNNNNNNNNNNNNNNGGTTGATCANNNNGCTGNNNNNNNN---------- 553 consensus_15074#3 ------------------------------------------------------------ consensus_15074#1 TGTTGTTATTTAATTCCATGTACCTGATCAATCATATACTGCTGGTTGAAACGGAGCTAG 696 consensus_15074#0 TCAGCAGGCAGTACTCTGTTCTCGACGCAAAGGTTCTCAGCAAGATACCTAGGGGTCCAG 769 consensus_15074#2 ------------------------------------------------------------ consensus_15074#3 ------------------------------------------------------------ consensus_15074#1 TTATGGTGTTTTAATCAAACGGCGGGATTTTCCTCGCCTGCAGACAGTATTTGTTCACAA 756 consensus_15074#0 CAAAAGATAAGAAGCAGAACTAGAAATGAAACACCATATCACGCTGGAACCTGACTTGGG 829 consensus_15074#2 ------------------------------------------------------------ consensus_15074#3 ------------------------------------------------------------ consensus_15074#1 AATCATCGGAGAGGGAGTATATTTTGTGGCTTGGTTATCCGGTACAGAGTTATACCAATA 816 consensus_15074#0 AGTGTTGGCATCTCACATCACAACATATGCATGAATCTTGAGTCCTTGACTTGGTTTGGC 889 consensus_15074#2 ------------------------------------------------------------ consensus_15074#3 ------------------------------------------------------------ consensus_15074#1 ACCATCTGAAAGCTTCTAGAAAACATTAAAATTAGGCAAACCATAATAAATTAGGGAAAC 876 consensus_15074#0 CCTTGTTGGTGCTTGGTACATATATGACCTGTCTGTAGATTTGTGTGTTGGGAGTGTCTT 949 consensus_15074#2 ------------------------------------------------------------ consensus_15074#3 ------------------------------------------------------------ consensus_15074#1 CATAAGTGTATGAATATTTAATCGGCGTCATACGGACAATTTGTCTTGTGTTCATAAACA 936 consensus_15074#0 GTGTAGTAAACTGTCGATATGATGTGGTTGGTGTGCAACTCTGCAATGTTAATATACAAG 1009 consensus_15074#2 ------------------------------------------------------------ consensus_15074#3 ------------------------------------------------------------ consensus_15074#1 TAAGAATGTTAAGTTACCAATCGTTAGCTCCTTCCAAACTCCAGAAGTTCTGTTACTTTC 996 consensus_15074#0 ATCTTGCTGCAAGCCTGCAACCATATATGATATACGTACAAGGACTCCATA-CCTATAAT 1068 consensus_15074#2 ------------------------------------------------------------ consensus_15074#3 ------------------------------------------------------------ consensus_15074#1 ATAAACCAAATCATGAATCACTAGAAAATACAAATGAAAATGGTTTTAGCAATTTGGAAT 1056 consensus_15074#0 TTACGTTAGTGTGGTTGTAATGTAGATCGTGCTCAAGTAATTGTAAAGTGCTGTGGTTCT 1128 consensus_15074#2 ------------------------------------------------------------ consensus_15074#3 ------------------------------------------------------------ consensus_15074#1 TTTTGAGCAAAGAGTTCAAAGGGGAGAAATTCATTGTCCTGTTAGATGTGTTTCATGAGG 1116 consensus_15074#0 TTCTTAAAAAAAAAAAAGTAATTCTCAGTTCTTGTTACTTTTAGTTTGGTTAAAAAA 1185 consensus_15074#2 --------------------------------------------------------- consensus_15074#3 --------------------------------------------------------- consensus_15074#1 AGGATAGGATGACAATTGTGAATTGTAGGAAAGGTTAGAGAGCATATCAT------- 1166 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||