These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15075#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1555 fasta sequence [TCACCCCCAAGCTCGGCGCAACCTCTCTCGACGTGCTAATGGCGGCGGCGGCGGCGGACTTCGCGGCGAGCAAGCGGGCCATGGCCTACGCGCTCTGCAAGCACCTCAGCCTCGATCCGAATACAATATCCAGTACAAGTATTGAAGAGAGTGATATTGCCACCCTGTTCTCACATATTGTGAAATCGAGTGAAGATGAGGTACTGAAATGGGTTGAATTTTCCAGCAATTTTGTTGGAAAATGTGGAGAACAGCATGCATTGCTTGGTAATCTGAATCAAGACTTGTCCCAGAAATCAGTTCTGTTGGGTAATGGTTTTAAACCATCAGTTGCTGATATTGTTGTGTTTGCAACCATACAAGTTTTTGTGAGTCATCTTGGTGAAAACGAGTTGCAGAAATATCCACATGTATTGCGGTGGATGGACTATATCCAGAACATCGTTGATTTTGGCACAACAGTACAAAAGGTTAACTTGACCAAATCTGTCTTCGATCCACCTTCTCATCCAAAGAAGGCAGATAAAGGTGACACTGATCCAAGTTCAAAGAAAGTTGTT-TCAGGACAGAAGAATGTGGGCAAATCGGATGCAAATGTTGATTCCAAGAAAGCTGCACCAGAGAATAAAGCTCCTGAGAATAAGGCAAATCCTACTCCAGCAAAAAATAAC-AAACCTTCTGGGGATAAAAAGAAAGCCCAGGAGAAATCTGCAGGAAAACCAAATGAGGGAGTTGCGGATAAAGCTCCACAGAAAACTGCAGAAAAGGACTCAGAATGCAATGTCAGTATCCTGAATATACAGGTTGGCCTTATTCGCAAAGCATGGAAGCACCCATCTGCTGACAGCCTCTTGGTTGAGGAGATAGATTTGGGAGATGGCAATGTGCATCAAGTTGTTAGTGGGCTTGCCAAGTTC-TTCAG-CCCAGAGGAACTTG-TTAATCGGCATGTTGTATTAATCACGAATGTGAAGCCTGGGAAGCTGCGAGACGTAATGTCTGCCGGATTGGTCTTGTGTGCTTCAAATCAAGATCATACAGTTGTAGAGCCATTGATTCCTCCAGAAGGAGCTAAGCCTGGAGAGCGTATTTCATTTGCAGGGTTTGATGGGAAGCCAGAAGATGTTCTTAATCCGAAGAAGAAACAGCTCGACAAGATCACACCGGATCTTCACACTGATGGAAATGGAATTGCAACATACCGAGGGGTACCCTTCACTACATCTGCTGGTCCATGTAGATCTTCTGTTCCTAATGCGAGCATTAAGTGAGCAGTTATTTTAACAGATTCCAAACATTGTTGTGCTATAACA-CATGCTAGGTGGATGTACTATTTCATCTTGCATCTTATTACATGCCCTATCAACTGTTGTCAGCGTAGCGTCCATCTA-CTGTGATATCTAATAGAAAATTTTGACTAGCCAATGTGAAGAACATTTGTATTACCTTGCACCAAATGCAAAATCCTTCATGAACCCGGTTGTTTTCAGGCAGGATTTTTGATGAATCAATTTCTCTTTACCCTTTAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK119168 [TCACCCCCAAGCTCGGCGCAACCTCTCTCGACGTGCTAATGGCGGCGGCGGCGGCGGACTTCGCGGCGAGCAAGCGGGCCATGGCCTACGCGCTCTGCAAGCACCTCAGCCTCGATCCGAATACAATATCCAGTACAAGTATTGAAGAGAGTGATATTGCCACCCTGTTCTCACATATTGTGAAATCGAGTGAAGATGAGGTACTGAAATGGGTTGAATTTTCCAGCAATTTTGTTGGAAAATGTGGAGAACAGCATGCATTGCTTGGTAATCTGAATCAAGACTTGTCCCAGAAATCAGTTCTGTTGGGTAATGGTTTTAAACCATCAGTTGCTGATATTGTTGTGTTTGCAACCATACAAGTTTTTGTGAGTCATCTTGGTGAAAACGAGTTGCAGAAATATCCACATGTATTGCGGTGGATGGACTATATCCAGAACATCGTTGATTTTGGCACAACAGTACAAAAGGTTAACTTGACCAAATCTGTCTTCGATCCACCTTCTCATCCAAAGAAGGCAGATAAAGGTGACACTGATCCAAGTTCAAAGAAAGTTGTT TCAGGACAGAAGAATGTGGGCAAATCGGATGCAAATGTTGATTCCAAGAAAGCTGCACCAGAGAATAAAGCTCCTGAGAATAAGGCAAATCCTACTCCAGCAAAAAATAAC AAACCTTCTGGGGATAAAAAGAAAGCCCAGGAGAAATCTGCAGGAAAACCAAATGAGGGAGTTGCGGATAAAGCTCCACAGAAAACTGCAGAAAAGGACTCAGAATGCAATGTCAGTATCCTGAATATACAGGTTGGCCTTATTCGCAAAGCATGGAAGCACCCATCTGCTGACAGCCTCTTGGTTGAGGAGATAGATTTGGGAGATGGCAATGTGCATCAAGTTGTTAGTGGGCTTGCCAAGTTC TTCAG CCCAGAGGAACTTG TTAATCGGCATGTTGTATTAATCACGAATGTGAAGCCTGGGAAGCTGCGAGACGTAATGTCTGCCGGATTGGTCTTGTGTGCTTCAAATCAAGATCATACAGTTGTAGAGCCATTGATTCCTCCAGAAGGAGCTAAGCCTGGAGAGCGTATTTCATTTGCAGGGTTTGATGGGAAGCCAGAAGATGTTCTTAATCCGAAGAAGAAACAGCTCGACAAGATCACACCGGATCTTCACACTGATGGAAATGGAATTGCAACATACCGAGGGGTACCCTTCACTACATCTGCTGGTCCATGTAGATCTTCTGTTCCTAATGCGAGCATTAAGTGAGCAGTTATTTTAACAGATTCCAAACATTGTTGTGCTATAACA CATGCTAGGTGGATGTACTATTTCATCTTGCATCTTATTACATGCCCTATCAACTGTTGTCAGCGTAGCGTCCATCTA CTGTGATATCTAATAGAAAATTTTGACTAGCCAATGTGAAGAACATTTGTATTACCTTGCACCAAATGCAAAATCCTTCATGAACACGGTTGTT ] [+] EMBL AK073951 [ CCCCAAGCTCGGCGCAACCTCTCTCGACGTGCTAATGGCGGCGGCGGCGGCGGACTTCGCGGCGAGCAAGCGGGCCATGGCCTACGCGCTCTGCAAGCACCTCAGCCTCGATCCGAATACAATATCCAGTACAAGTATTGAAGAGAGTGATATTGCCACCCTGTTCTCACATATTGTGAAATCGAGTGAAGATGAGGTACTGAAATGGGTTGAATTTTCCAGCAATTTTGTTGGAAAATGTGGAGAACAGCATGCATTGCTTGGTAATCTGAATCAAGACTTGTCCCAGAAATCAGTTCTGTTGGGTAATGGTTTTAAACCATCAGTTGCTGATATTGTTGTGTTTGCAACCATACAAGTTTTTGTGAGTCATCTTGGTGAAAACGAGTTGCAGAAATATCCACATGTATTGCGGTGGATGGACTATATCCAGAACATCGTTGATTTTGGCACAACAGTACAAAAGGTTAACTTGACCAAATCTGTCTTCGATCCACCTTCTCATCCAAAGAAGGCAGATAAAGGTGACACTGATCCAAGTTCAAAGAAAGTTGTT TCAGGACAGAAGAATGTGGGCAAATCGGATGCAAATGTTGATTCCAAGAAAGCTGCACCAGAGAAT ] [+] EMBL CB679917 [ AAGCTCGGCGCAACCTCTCTCGACGTGCTAATGGCGGCGGCGGCGGCGGACTTCGCGGCGAGCAAGCGGGCCATGGCCTACGCGCTCTGCAAGCACCTCAGCCTCGATCCGAATACAATATCCAGTACAAGTATTGAAGAGAGTGATATTGCCACCCTGTTCTCACATATTGTGAAATCGAGTGAAGATGAGGTACTGAAATGGGTTGAATTTTCCAGCAATTTTGTTGGAAAATGTGGAGAACAGCATGCATTGCTTGGTAATCTGAATCAAGACTTGTCCCAGAAATCAGTTCTGTTGGGTAATGGTTTTAAACCATCAGTTGCTGATATTGTTGTGTTTGCAACCATACAAGTTTTTGTGAGTCATCTTGGTGAAAACGAGTTGCAGAAATATCCACATGTATTGCGGTGGATGGACTATATCCAGAACATCGTTGATTTTGGCACAACAGTACAAAAGGTTAACTTGACCAAATCTGTCTTCGATCCACCTTCTCATCCAAAGAAGGCAGATAAAGGTGACACTGATCCAAGTTCAAAGAAAGTTGTT TCAGGACAGAAGAATGTGGGCAAATCGGATGCAAATGTTGATTCCAAGAAAGCTGCACCAGAGAATAAAGCTCCTGAGAATAAGGCAAATCCTACTCCAGCAAAAAATAAC AAACCTTCTGGGGATAAAAAGAGAGCCCAGGAGAAATCTGCAGGAAAACCAAATGAGGGAGTTGCGGATAAAGCTCCACAGAAAACTGCAGAAAAGGACTCAGAATGCAATGTCAGTATCCTGAATATACAAGTTGGCCTTATTCGCAAAGCATGGAAGCAC ] [+] EMBL CB647114 [ AAGCTCGGCGCAACCTCTCTCGACGTGCTAATGGCGGCGGCGGCGGCGGACTTCGCGGCGAGCAAGCGGGCCATGGCCTACGCGCTCTGCAAGCACCTCAGCCTCGATCCGAATACAATATCCAGTACAAGTATTGAAGAGAGTGATATTGCCACCCTGTTCTCACATATTGTGAAATCGAGTGAAGATGAGGTACTGAAATGGGTTGAATTTTCCAGCAATTTTGTTGGAAAATGTGGAGAACAGCATGCATTGCTTGGTAATCTGAATCAAGACTTGTCCCAGAAATCAGTTCTGTTGGGTAATGGTTTTAAACCATCAGTTGCTGATATTGTTGTGTTTGCAACCATACAAGTTTTTGTGAGTCATCTTGGTGAAAACGAGTTGCAGAAATATCCACATGTATTGCGGTGGATGGACTATATCCAGAACATCGTTGATTTTGGCACAACAGTACAAAAGGTTAACTTGACCAAATCTGTCTTCGATCCACCTTCTCATCCAAAGAAGGCAGATAAAGGTGACACTGATCCAAGTTCAAAGAAAGTTGTT TCAGGACAGAAGAATGTGGGCAAATCGGATGCAAATGTTGATTCCAAGAAAGCTGCACCAGAGAATAAAGCTCCTGAGAATAAGGCAAATCCTACTCCAGCAAAAAATAAC AAACCTTCTGGGGATAAAAAGACAGCCCAGGAGAAATCTGCAGGAAAACCAAATGAGGGAGTTGCGGATAAAGCTCCA ] [+] EMBL CB647070 [ AAGCTCCTTGCAACCTCTCTCGACTTGCTAATGGCGGCGGCGGCGGCGGACTTCGCGGCGAGCAAGCGGGCCATGGCCTACGCGCTCTGCAAGCACCTCAGCCTCGATCCGAATACAATATCCAGTACAAGTATTGAAGAGAGTGATATTGCCACCCTGTTCTCACATATTGTGAAATCGAGTGAAGATGAGGTACTGAAATGGGTTGAATTTTCCAGCAATTTTGTTGGAAAATGTGGAGAACAGCATGCATTGCTTGGTAATCTGAATCAAGACTTGTCCCAGAAATCAGTTCTGTTGGGTAATGGTTTTAAACCATCAGTTGCTGATATTGTTGTGTTTGCAACCATACAAGTTTTTGTGAGTCATCTTGGTGAAAACGAGTTGCAGAAATATCCACATGTATTGCGGTGGATGGACTATATCCAGAACATCGTTGATTTTGGCACAACAGTACAAAAGGTTAACTTGACCAAATCTGTCTTCGATCCACCTTCTCATCCAAAGAAGGCAGATAAAGGTGACACTGATCCAAGTTCAAAGAAAGTTGTT TCAGGACAGAAGAATGTGGGCAAATCGGATGCAAATGTTGATTCCAAGAAAGCTGCACCAGAGAATAAAGCTCCTGAGAATAAGGCAAATCCTACTCCAGCAAAAAATAAC AAACCTTCTGGGGATAAAAAGAAAGCCCAGGAGAAATCTGCAGGAAAACCAAATGAGGGAGTTG ] [+] EMBL CB669098 [ GCGCAACCCCTCTCGACGTGCTAATGGCGGCGGCGGCGGCGGACTTCTCGGCGAGCAAACGGGCCATGGCCTACGCGCTCTGCGAGCACCTCAGCCTCGATCCGAATACAATATCCAGAACAAGTATTGAATAGAGTGATATTGCCACCCTGTACTCACATATTGGGAAATCGAGTGAAGATGAGGGACTGAAATGGGATGAATTTTCCAGCAATTTTGTTGGAAAATGAGGAGAACAGCATGCATTGCTTGGTAATCTGAATCGAGACTTGACCCATAAATCCGTTCTGTTGGGTACTGGTTTTAAACCATCAGCTGCTGATATTGTTGTGTTTGCAACCATACAAGGTTTTGTGAGTCATCTTGGTGAAAACGAGTTGCAGAAATATCCTCCTGCATTGCGGTGGATGGACTATATCCAGAACATCGTTGATTTTGGCACAACAGTACGAAAGGTTAACTTGACCAAATCTGTCTTCAATCCACCTTCTCATCCAAAGAAGGCAGATAAAGGTGACACTGATCCAAGTTCAAAGAAAGTTGTT TCACGACAGAAGAATGTGGGCTAATCGGATGCAAATGTTGATTCCAA ] [+] EMBL CB669137 [ cctCAACCTCTCTCGACGTGCTAATGGCGGCGGCGGCGGCGGACTTCGCGGAGAGCAAACGGGCCATGGCCTACGCGCTCTGCGAGCACCTCAGCCTCGATCCGAATACAATATCCAGTACAAGTATTGAAGAGAGGGATATTGCCACCCTGTTCTCACATATTGGGAAATCGAATGAAGATGAGGGACTGAAATGGGTTGAATTTTCCACCAATTTTGTTGGAAAATGAGGAGAACAGCATGCATTGCTTGGTAATCTGAATCAAGACTTGACCCATAAATCATTTCTGTTGGGTAATGGTTTTAAACCATCAGCTGCTGATATTGCTGCGTTTGCAACCATACAAGGTTTTGTGAGTCATCTTGGTGAAAACGAGTTGCACAAATATCCACATGTATTGCGGAGGATGGACTATATCCAGAACATCGTTGATTTTGGCACAACAGTACAAAAGGTTAACTTGACCAAATCTGTCTTCAATCCACCTTCTCATCCAAAGAAGGCAGATAAAGGTGACACTGATCCAAGTTCAAAGAAAGTTGTTATCGTGACAGAAGAATGTGGGCAAATCGGATGCAAATGTTGATTCCAAGAAAGCTGCACCAAAGAATAAAGCTCCTGAGAATAACGCAA ] [+] EMBL AK103171 [ CTCTCTCGACGTGCTAATGGCGGCGGCGGCGGCGGACTTCGCGGCGAGCAAGCGGGCCATGGCCTACGCGCTCTGCAAGCACCTCAGCCTCGATCCGAATACAATATCCAGTACAAGTATTGAAGAGAGTGATATTGCCACCCTGTTCTCACATATTGTGAAATCGAGTGAAGATGAGGTACTGAAATGGGTTGAATTTTCCAGCAATTTTGTTGGAAAATGTGGAGAACAGCATGCATTGCTTGGTAATCTGAATCAAGACTTGTCCCAGAAATCAGTTCTGTTGGGTAATGGTTTTAAACCATCAGTTGCTGATATTGTTGTGTTTGCAACCATACAAGTTTTTGTGAGTCATCTTGGTGAAAACGAGTTGCAGAAATATCCACATGTATTGCGGTGGATGGACTATATCCAGAACATCGTTGATTTTGGCACAACAGTACAAAAGGTTAACTTGACCAAATCTGTCTTCGATCCACCTTCTCATCCAAAGAAGGCAGATAAAGGTGACACTGATCCAAGTTCAAAGAAAGTTGTT TCAGGACAGAAGAATGTGGGCAAATCGGATGCAAATGTTGATTCCAAGAAAGCTGCACCAGAGAATAAAGCTCCTGAGAATAAGGCAAATCCTACTCCAGCAAAAAATAAC AAACCTTCTGGGGATAAAAAGAAAGCCCAGGAGAAATCTGCAGGAAAACCAAATGAGGGAGTTGCGGATAAAGCTCCACAGAAAACTGCAGAAAAGGACTCAGAATGCAATGTCAGTATCCTGAATATACAGGTTGGCCTTATTCGCAAAGCATGGAAGCACCCATCTGCTGACAGCCTCTTGGTTGAGGAGATAGATTTGGGAGATGGCAATGTGCATCAAGTTGTTAGTGGGCTTGCCAAGTTC TTCAG CCCAGAGGAACTTG TTAATCGGCATGTTGTATTAATCACGAATGTGAAGCCTGGGAAGCTGCGAGACGTAATGTCTGCCGGATTGGTCTTGTGTGCTTCAAATCAAGATCATACAGTTGTAGAGCCATTGATTCCTCCAGAAGGAGCTAAGCCTGGAGAGCGTATTTCATTTGCAGGGTTTGATGGGAAGCCAGAAGATGTTCTTAATCCGAAGAAGAAACAGCTCGACAAGATCACACCGGATCTTCACACTGATGGAAATGGAATTGCAACATACCGAGGGGTACCCTTCACTACATCTGCTGGTCCATGTAGATCTTCTGTTCCTAATGCGAGCATTAAGTGAGCAGTTATTTTAACAGATTCCAAACATTGTTGTGCTATAACA CATGCTAGGTGGATGTACTATTTCATCTTGCATCTTATTACATGCCCTATCAACTGTTGTCAGCGTAGCGTCCATCTA CTGTGATATCTAATAGAAAATTTTGACTAGCCAATGTGAAGAACATTTGTATTACCTTGCACCAAATGCAAAATCCTTCATGAACACGGTTGTTTTCAGGCAGGATTT ] [+] EMBL CB669096 [ GCGAGCAAGCGGGCCATGGCCTACGCGCTCTGCCAGCACCTCAGCCTCGATCCGAATACAATATCCAGTACAAGTATTGAAGAGAGTGATATTGCCACCCTGTTCTCACATATTGTGAAATCGAGTGAAGATGAGGTACTGAAATGGGTTGAATTTTCCAGCAATTTTGTTGGAAAATGTGGAGAACAGCATGCATTGCTTGGTAATCTGAATCAAGACTTGTCCCAGAAATCAGTTCTGTTGGGTAATGGTTTTAAACCATCAGTTGCTGATATTGTTGTGTTTGCAACCATACAAGTTTTTGTGAGTCATCTTGGTGAAAACGAGTTGCAGAAATATCCACATGTATTGCGGTGGATGGACTATATCCAGAACATCGTTGATTTTGGCACAACAGTACAAAAGGTTAACTTGACCAAATCTGTCTTCGATCCACCTTCTCATCCAAAGAAGGCAGATAAAGGTGACACTGATCCAAGTTCAAAGAAAGTTGTT TCATGACAGAAGAATGTGGGCCAATCGGATGCAAATGTTGATTCCAAGAAAGCTGCACCAGAAAATAAAGCTCCTGAAAATAAGGCAAATCCTACTCCAGCAAAAAATAACAAAACCCTCTG ] [+] EMBL CA756351 [ GCGGGCCATGGCCTACGCGCTCTGCAAGCACCTCAGCCTCGATCCGAATACAATATCCAGTACAAGTATTGAAGAGAGTGATATTGCCACCCTGTTCTCACATATTGTGAAATCGAGTGAAGATGAGGTACTGAAATGGGTTGAATTTTCCAGCAATTTTGTTGGAAAATGTGGAGAACAGCATGCATTGCTTGGTAATCTGAATCAAGACTTGTCCCAGAAATCAGTTCTGTTGGGTAATGGTTTTAAACCATCAGTTGCTGATATTGTTGTGTTTGCAACCATACAAGTTTTTGTGAGTCATCTTGGTGAAAACGAGTTGCAGAAATATCCACATGTATTGCGGTGGATGGACTATATCCAGAACATCGTTGATTTTGGCACAACAGTACAAAAGGTTAACTTGACCAAATCTGTCTTCGATCCACCTTCTCATCNCAAGAAGGCAGATAAAGGTGACACTGATCCAAGTTCAAAGAAAGTTGTT TCAGGACAGAAGAATGTGGGCAAATCGGATGCAAATGTTGATTCCAAGAAAGCTGCACCAGAGAATAAAGCTCCTGAGAATAAGGNCAATCCTACTCCAGC AAAAATAAC AAACC ] [-] EMBL CB647071 [ AAC AAACCTTCTGGGGATAAAAAGAAAGCCCAGGAGAAATCTGCAGGAAAACCAAATGAGGGAGTTGCGGATAAAGCTCCACAGAAAACTGCAGAAAAGGACTCAGAATGCAATGTCAGTATCCTGAATATACAGGTTGGCCTTATTCGCAAAGCATGGAAGCACCCATCTGCTGACAGCCTCTTGGTTGAGGAGATAGATTTGGGAGATGGCAATGTGCATCAAGTTGTTAGTGGGCTTGCCAAGTTC TTCAG CCCAGAGGAACTTG TTAATCGGCATGTTGTATTAATCACGAATGTGAAGCCTGGGAAGCTGCGAGACGTAATGTCTGCCGGATTGGTCTTGTGTGCTTCAAATCAAGATCATACAGTTGTAGAGCCATTGATTCCTCCAGAAGGAGCTAAGCCTGGAGAGCGTATTTCATTTGCAGGGTTTGATGGGAAGCCAGAAGATGTTCTTAATCCGAAGAAGAAACAGCTCGACAAGATCACACCGGATCTTCACACTGATGGAAATGGAATTGCAACATACCGAGGGGTACCCTTCACTACATCTGCTGGTCCATGTAGATCTTCTGTTCCTAATGCGAGCATTAAGTGAGCAGTTATTTTAACAGATTCCAAACATTGTTGTGCTATAACA CATGCTAGGTGGATGTACTATTTCATCTTGCATCTTATTACATGCCCTATCAACTGTTGTCAGCGTAGCGTCCATCTA CTGTGATATCTAATAGAAAATTTTGACTAGCCAATGTGAAGAACATTTGTATTACCTTGCACCAAATGCAAAATCCTTCATGA ] [-] EMBL CB669097 [ TTGCGGATAAAGCTCCACAGAAAACTGCAGAAAAGGACTCAGAATGCAATGTCAGTATCCTGAATATACAGGTTGGCCTTATTCGCAAAGCATGGAAGCACCCATCTGCTGACAGCCTCTTGGTTGAGGAGATAGATTTGGGAGATGGCAATGTGCATCAAGTTGTTAGTGGGCTTGCCAAGTTC TTCAG CCCAGAGGAACTTG TTAATCGGCATGTTGTATTAATCACGAATGTGAAGCCTGGGAAGCTGCGAGACGTAATGTCTGCCGGATTGGTCTTGTGTGCTTCAAATCAAGATCATACAGTTGTAGAGCCATTGATTCCTCCAGAAGGAGCTAAGCCTGGAGAGCGTATTTCATTTGCAGGGTTTGATGGGAAGCCAGAAGATGTTCTTAATCCGAAGAAGAAACAGCTCGACAAGATCACACCGGATCTTCACACTGATGGAAATGGAATTGCAACATACCGAGGGGTACCCTTCACTACATCTGCTGGTCCATGTAGATCTTCTGTTCCTAATGCGAGCATTAAGTGAGCAGTTATTTTAACAGATTCCAAACATTGTTGTGCTATAACA CATGCTAGGTGGATGTACTATTTCATCTTGCATCTTATTACATGCCCTATCAACTGTTGTCAGCGTAGCGTCCAT TAGGTGTGATATCTAATA ] [+] EMBL BM422044 [ GTTCTTTCAGCCCCAGAGGAACTTGTTTAATCGGCATGTTGTATTAATCACGAATGTGAAGCCTGGGAAGCTGCGAGACGTAATGTCTGCCGGATTGGTCTTGTGTGCTTCAAATCAAGATCATACAGTTGTAGAGCCCTTGATTCCTCCAGAAGGAGCTAAGCCTGGAGAGCGTATTTCATTTGCAGGGTTTGATGGGAAGCCAGAAGATGTTCTTAATCCGAAGAAGAAACAGCTCGACAAGATCACACCGGATCTTCACACTGATGGAAATGGAATTGCAACATACCGAGGGGTACCCTTCACTACATCTGCTGGTCCATGTAGATCTTCTGTTCCTAATGCGAGCATTAAGTGAGCAGTTATTTTAACAGATTCCCAACATTGTTGTGCTATAACACCATGCTAGGTGGATGTACTATTTCATCTTGCATCTTATTACATGCCCTATCAACTGTTGTCAGCGTAGCGTCCATCTA CTGTGATATCTAATAGAAAATTTTGACTAGCC ATGTGAAGAACATTTGTATTA CTTGCNCC AATGC AAATCCTTCANGAACCCGGTTGTTTTCA GCAGGAaaaaaa ] [-] EMBL CA763221 [ AATGCGAGCATTAAGTGAGCAGTTATTTTAACAGATTCCAAACATTGTTGTGCTATAACC CCTGCTAGGTGGATGTACTATTTCATCTTGCATCTTATTACATGCCCTATCAACTGTTGTTAGCGTAGCGTCCATCTA CTGTGATATTTAATAGAAAATTTTGGCTAGCCAATGTGAAGAACATTTGTATTACCTTGCCCCAAATGCAAAATCCTTCATGAACCCGGTTGTTTTCAGGCAGGATTTTTGATGAATCAATTTCTCTTTACCCTTTAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA763222 [ AATGCGAGCATTAAGTGAGCAGTTATTTTAACAGATTCCAAACATTGTTGTGCTATAACC CCTGCTAGGTGGATGTACTATTTCATCTTGCATCTTATTACATGCCCTATCAACTGTTGTTAGCGTAGCGTCCATCTA CTGTGATATTTAATAGAAAATTTTGGCTAGCCAATGTGAAGAACATTTGTATTACCTTGCCCCAAATGCAAAATCCTTCATGAACCCGGTTGTTTTCAGGCAGGATTTTTGATGAATCAATTTCTCTTTACCCTTTAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_15075#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 706 fasta sequence [GCAATGTCAGTATCCTGAATATACAGGTTGGCCTTATTCGCAAAGCATGGAAGCACCCATCTGCTGACAGCCTCTTGGTTGAGGAGATAGATTTGGGAGATGGCAATGTGCATCAAGTTGTTAGTGGGCTTGCCAAGTTCTTCAGCCCAGAGGAACTTGTTAATCGGCATGTTGTATTAATCACGAATGTGAAGCCTGGGAAGCTGC-GAGACGTAATGTCTGCCGGATTGGTCTTGTGTGCTTCAAATCAAGATCATACAGTTGTAGAGCCATTGATTCCTCCA-GAAGGAGCTAAGCCTGGAGAGCGTATTTCATTTGCAGGGTTTGATGGGAAGCCAGAAGATGTTCTTAATCCGAAGAAGAAACAGCTCGACAAGATCACACCGGATCTTCACACTGATGGA-AATGGAATTGCAACATACCGAGGGGTACCCTTCACTACATCTGCTGGTCCATGTAGATCTTCTGTTCCTAATGCGAGCA-TTAAGTGAGCAGTTATTTTAACAGATTCCAAACATTGTTGTGCTATAACACATGCTAGGTGGATGTACTATTTCATCTTGCATCTTATTACATGCCCTATCAACTGTTGTCAGCGTAGCGTCCATCTACTGTGATATCTAATAGAAAATTTTGACTAGCCAATGTGAAGAACATTTGTATTACCTTGCACC-AATGCAAAATCCTTCATGAAAAAAAAAAAGGG] [-] EMBL CB647115 [GCAATGTCAGTATCCTGAATATACAGGTTGGCCTTATTCGCAAAGCATGGAAGCACCCATCTGCTGACAGCCTCTTGGTTGAGGAGATAGATTTGGGAGATGGCAATGTGCATCAAGTTGTTAGTGGGCTTGCCAAGTTCTTCAGCCCAGAGGAACTTGTTAATCGGCATGTTGTATTAATCACGAATGTGAAGCCTGGGAAGCTGC GAGACGTAATGTCTGCCGGATTGGTCTTGTGTGCTTCAAATCAAGATCATACAGTTGTAGAGCCATTGATTCCTCCA GAAGGAGCTAAGCCTGGAGAGCGTATTTCATTTGCAGGGTTTGATGGGAAGCCAGAAGATGTTCTTAATCCGAAGAAGAAACAGCTCGACAAGATCACACCGGATCTTCACACTGATGGA AATGGAATTGCAACATACCGAGGGGTACCCTTCACTACATCTGCTGGTCCATGTAGATCTTCTGTTCCTAATGCGAGCA TTAAGTGAGCAGTTATTTTAACAGATTCCAAACATTGTTGTGCTATAACACATGCTAGGTGGATGTACTATTTCATCTTGCATCTTATTACATGCCCTATCAACTGTTGTCAGCGTAGCGTCCATCTACTGTGATATCTAATAGAAAATTTTGACTAGCCAATGTGAAGAACATTTGTATTACCTTGCACCAAATGCAAAATCCTTCATGAACAAAAAAAAGGG] [+] EMBL BI805273 [ GAGGAGATAGATTT GGAGAT GCATGGTGCATCAAGTTGTTAGTGGGCTTGCCAAGTTCTTCAGCCCAGAGGAACTTGTTAATCGGCATGTTGTATTAATCACGAATGTGAAGCCTGGGAAGCTGC GAGACGTAATGTCTGCCGGATTGGTCTTGTGTGCTTC AATCAAGATCATACAGTTGTAGAGCCATTGATTCCTCCA GAAGGAGCTAAGCCTGGAGAGCGTATTTCATTTGCAGGGTTTGATGGGAAGCCAGAAGATGTTCTTAATCCGAAGAAGAAACAGCTCGACAAGATCACACCGGATCTTCACACTGATGGACCATGGAATTGCAACATACCGAGGGGTACCCTTCACTACATCTGCTGGTCCATGTAGATCTTCTGTTCCTAATGCGAGCA TTAAGTGAGCAGTTATTTTAACAGATTCC AACATTGTTGTGCTATAACACATGCTAGGTGGATGTACTATTTCATCTTGCATCTTATTACATGCCCTATC ACTGTTGTCAGCGTAGCGTCCATCTACTGTGATATCTAATAGAAAATTTTGACTAGCC ATGTGAAGAACATTTGTATTACCTTGCACC AATGC AAATCCTTCATGAAAAAA ] [+] EMBL BE229579 [ cgaGAAGCTGCSGAGACGTAATGTCTGCCGGATTGGTCTTGTGTGCTTCAAATCAAGATCATACAGTTGTAGAGCCATTGATTCCTCCA GAAGGAGCTAAGCCTGGAGAGCGTATTTCATTTGCAGGGTTTGATGGGAAGCCAGAAGATGTTCTTAATCCGGAGAAGAAACAGCTCGACAAGATCACACCGGATCTTCACACTGATGGA AATGGAATTGCAACATACCGAGGGGTACCYTTCACTACATCTGCTGGTCCATGTAGATCTTCTGTTCCTAATGCGAGCA TTAAGTGAGCAGTTATTTTAACAGATTCCAAACATTGTTGTGCTATAACACATGCTAGGKGGRTGYACTATTACATCTTGCATCTTATTACATGCCCTATCAACTGTTGTCAGCGTAG ACACATCTACTGTGATATCTAATAG AAATTTTGACTAGCCAATGTGAA ] [+] EMBL BI805048 [ TGTGCTTCAAATCAAGATCATACA TTGTAGA CCATTGATTCCTCCACGAAGGAGCTAAGCCTGGAGAGCGTATTTCATTTGCAGGGTTTGATGGGAAGCCAGAAGATGTTCTTAATCCGAAGAAGAAACAGCTCGACAAGATCACACCGGATCTTCACACTGATGGA AATGGAATTGCAACATACCGAGGGGTACCCTTCACTACATCTGCTGGTCCATGTAGATCTTCTGTTCCTAATGCGAGCACTTAAGTGAGCAGTTATTTTAACAGATTCCCAACATTGTTGTGCTATAACACATGCTAGGTGGATGTACTATTTCATCTTGCATCTTATTACATGCCCTATCAACTGTTGTCAGCGTAGCGTCCATCTACTGTGATATCTAATAGAAAATTTTGACTAGCC ATGTGAAGAACATTTGTATTACCTTGCACC AATGCAAAATCCTTCATGAAAAAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15075#0 TCACCCCCAAGCTCGGCGCAACCTCTCTCGACGTGCTAATGGCGGCGGCGGCGGCGGACT 60 consensus_15075#1 ------------------------------------------------------------ consensus_15075#0 TCGCGGCGAGCAAGCGGGCCATGGCCTACGCGCTCTGCAAGCACCTCAGCCTCGATCCGA 120 consensus_15075#1 ------------------------------------------------------------ consensus_15075#0 ATACAATATCCAGTACAAGTATTGAAGAGAGTGATATTGCCACCCTGTTCTCACATATTG 180 consensus_15075#1 ------------------------------------------------------------ consensus_15075#0 TGAAATCGAGTGAAGATGAGGTACTGAAATGGGTTGAATTTTCCAGCAATTTTGTTGGAA 240 consensus_15075#1 ------------------------------------------------------------ consensus_15075#0 AATGTGGAGAACAGCATGCATTGCTTGGTAATCTGAATCAAGACTTGTCCCAGAAATCAG 300 consensus_15075#1 ------------------------------------------------------------ consensus_15075#0 TTCTGTTGGGTAATGGTTTTAAACCATCAGTTGCTGATATTGTTGTGTTTGCAACCATAC 360 consensus_15075#1 ------------------------------------------------------------ consensus_15075#0 AAGTTTTTGTGAGTCATCTTGGTGAAAACGAGTTGCAGAAATATCCACATGTATTGCGGT 420 consensus_15075#1 ------------------------------------------------------------ consensus_15075#0 GGATGGACTATATCCAGAACATCGTTGATTTTGGCACAACAGTACAAAAGGTTAACTTGA 480 consensus_15075#1 ------------------------------------------------------------ consensus_15075#0 CCAAATCTGTCTTCGATCCACCTTCTCATCCAAAGAAGGCAGATAAAGGTGACACTGATC 540 consensus_15075#1 ------------------------------------------------------------ consensus_15075#0 CAAGTTCAAAGAAAGTTGTTTCAGGACAGAAGAATGTGGGCAAATCGGATGCAAATGTTG 600 consensus_15075#1 ------------------------------------------------------------ consensus_15075#0 ATTCCAAGAAAGCTGCACCAGAGAATAAAGCTCCTGAGAATAAGGCAAATCCTACTCCAG 660 consensus_15075#1 ------------------------------------------------------------ consensus_15075#0 CAAAAAATAACAAACCTTCTGGGGATAAAAAGAAAGCCCAGGAGAAATCTGCAGGAAAAC 720 consensus_15075#1 ------------------------------------------------------------ consensus_15075#0 CAAATGAGGGAGTTGCGGATAAAGCTCCACAGAAAACTGCAGAAAAGGACTCAGAATGCA 780 consensus_15075#1 ---------------------------------------------------------GCA 3 *** consensus_15075#0 ATGTCAGTATCCTGAATATACAGGTTGGCCTTATTCGCAAAGCATGGAAGCACCCATCTG 840 consensus_15075#1 ATGTCAGTATCCTGAATATACAGGTTGGCCTTATTCGCAAAGCATGGAAGCACCCATCTG 63 ************************************************************ consensus_15075#0 CTGACAGCCTCTTGGTTGAGGAGATAGATTTGGGAGATGGCAATGTGCATCAAGTTGTTA 900 consensus_15075#1 CTGACAGCCTCTTGGTTGAGGAGATAGATTTGGGAGATGGCAATGTGCATCAAGTTGTTA 123 ************************************************************ consensus_15075#0 GTGGGCTTGCCAAGTTCTTCAGCCCAGAGGAACTTGTTAATCGGCATGTTGTATTAATCA 960 consensus_15075#1 GTGGGCTTGCCAAGTTCTTCAGCCCAGAGGAACTTGTTAATCGGCATGTTGTATTAATCA 183 ************************************************************ consensus_15075#0 CGAATGTGAAGCCTGGGAAGCTGCGAGACGTAATGTCTGCCGGATTGGTCTTGTGTGCTT 1020 consensus_15075#1 CGAATGTGAAGCCTGGGAAGCTGCGAGACGTAATGTCTGCCGGATTGGTCTTGTGTGCTT 243 ************************************************************ consensus_15075#0 CAAATCAAGATCATACAGTTGTAGAGCCATTGATTCCTCCAGAAGGAGCTAAGCCTGGAG 1080 consensus_15075#1 CAAATCAAGATCATACAGTTGTAGAGCCATTGATTCCTCCAGAAGGAGCTAAGCCTGGAG 303 ************************************************************ consensus_15075#0 AGCGTATTTCATTTGCAGGGTTTGATGGGAAGCCAGAAGATGTTCTTAATCCGAAGAAGA 1140 consensus_15075#1 AGCGTATTTCATTTGCAGGGTTTGATGGGAAGCCAGAAGATGTTCTTAATCCGAAGAAGA 363 ************************************************************ consensus_15075#0 AACAGCTCGACAAGATCACACCGGATCTTCACACTGATGGAAATGGAATTGCAACATACC 1200 consensus_15075#1 AACAGCTCGACAAGATCACACCGGATCTTCACACTGATGGAAATGGAATTGCAACATACC 423 ************************************************************ consensus_15075#0 GAGGGGTACCCTTCACTACATCTGCTGGTCCATGTAGATCTTCTGTTCCTAATGCGAGCA 1260 consensus_15075#1 GAGGGGTACCCTTCACTACATCTGCTGGTCCATGTAGATCTTCTGTTCCTAATGCGAGCA 483 ************************************************************ consensus_15075#0 TTAAGTGAGCAGTTATTTTAACAGATTCCAAACATTGTTGTGCTATAACACATGCTAGGT 1320 consensus_15075#1 TTAAGTGAGCAGTTATTTTAACAGATTCCAAACATTGTTGTGCTATAACACATGCTAGGT 543 ************************************************************ consensus_15075#0 GGATGTACTATTTCATCTTGCATCTTATTACATGCCCTATCAACTGTTGTCAGCGTAGCG 1380 consensus_15075#1 GGATGTACTATTTCATCTTGCATCTTATTACATGCCCTATCAACTGTTGTCAGCGTAGCG 603 ************************************************************ consensus_15075#0 TCCATCTACTGTGATATCTAATAGAAAATTTTGACTAGCCAATGTGAAGAACATTTGTAT 1440 consensus_15075#1 TCCATCTACTGTGATATCTAATAGAAAATTTTGACTAGCCAATGTGAAGAACATTTGTAT 663 ************************************************************ consensus_15075#0 TACCTTGCACCAAATGCAAAATCCTTCATGAACCCGGTTGTTTTCAGGCAGGATTTTTGA 1500 consensus_15075#1 TACCTTGCACCAA-TGCAAAATCCTTCATGAAAAAAAAAAAGGG---------------- 706 ************* ****************** consensus_15075#0 TGAATCAATTTCTCTTTACCCTTTAAAAAAAAAAGAAAAAAAAAAAAAAAAAAAA 1555 consensus_15075#1 ------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||