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Oryza sativa
cluster # 15095 cluster # 15095       Sequences # 20       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_15095#0 length = 938 sequences # 9  
consensus_15095#1 length = 763 sequences # 10  
consensus_15095#2 length = 352 sequences # 1  

consensusID : consensus_15095#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 938
fasta sequence
                              [CCGATTCCCAAACCCTAGCCTAGGAGAAGACGAGAGCCGACACCCTCCGCCGCCGGCTTCCATTGCCGCCACCGCCACAGCCAACGGGCAGCAGGATGGAGGCTGGCAGGCCGGCGAGCGCTGCCGGGCAGGGAGAATCCTCCTCGTCCTCCGGCGCGATGGCGGTGGACGCGGCTGGCGGCGTGGAGAAGCCGCGGTTCGAGGCGCTGATGCCGAGCGAGATGAGCGGCGGGAGGCCACAGTTCAGGAAGGTGCCGGTGCCGCAGCA-CGC-TTCGCGCCGCTCAAGAAGGCGTGGATGGATATCTACACCCCCGTCTACGAGCACATGAAGATCGACATCCGCATGAACCTTAAGGCAAGAAGGGTGGAGCTGAAAACAAGACAAGACACACCTGACGTGAGCAACCTTCAGAAGTGTGCAGACTTCGTACATGCTTTTATGCTTGGTTTTGACATCGCCGATGCTGTTGCGCTGCTCCGTCTCGATGACCTGTATGTGGATTCCT-TTGAGATCAAGGACGTGAAGACACT-CCG-AGGAGAGCATCTGTCACGTGCTATTGGCCGCTTGTCAGGAAAAGGAGGCAAGACCAAATATGCCATCGAGAATTCTACGAGGACTCGCATAGTTATCGCTGATACGAAGATCCATATACTTGGATCCCTTGTTAACATCAAGGTTGCTCGGGATTCACTCTGTAGTCTTATCTTAGGTTCTCCTGCAGGCAAAGTCTATTCTAAGCTAAGGGCTGTTTCTGCTAGGTTAGCAGAAAGGTATTAGATGGTGCATCGTACCGTTGCAGTTTTGGCCTCGTAATATGTTGTATTGGCTGATTTGTGTGCCTGGGCTCTTAATTGTATCGTTCGAATGAACAAACTTAAAATGCTGAGAGTTTTGTAACAATACATATGCATTGTGTTTAGTTCTGTCTGTTGCCCCC]

[+] EMBL AK071287             [CCGATTCCCAAACCCTAGCCTAGGAGAAGACGAGAGCCGACACCCTCCGCCGCCGGCTTCCATTGCCGCCACCGCCACAGCCAACGGGCAGCAGGATGGAGGCTGGCAGGCCGGCGAGCGCTGCCGGGCAGGGAGAATCCTCCTCGTCCTCCGGCGCGATGGCGGTGGACGCGGCTGGCGGCGTGGAGAAGCCGCGGTTCGAGGCGCTGATGCCGAGCGAGATGAGCGGCGGGAGGCCACAGTTCAGGAAGGTGCCGGTGCCGCAGCACCGC TTCGCGCCGCTCAAGAAGGCGTGGATGGATATCTACACCCCCGTCTACGAGCACATGAAGATCGACATCCGCATGAACCTTAAGGCAAGAAGGGTGGAGCTGAAAACAAGACAAGACACACCTGACGTGAGCAACCTTCAGAAGTGTGCAGACTTCGTACATGCTTTTATGCTTGGTTTTGACATCGCCGATGCTGTTGCGCTGCTCCGTCTCGATGACCTGTATGTGGATTCCT TTGAGATCAAGGACGTGAAGACACT CCG AGGAGAGCATCTGTCACGTGCTATTGGCCGCTTGTCAGGAAAAGGAGGCAAGACCAAATATGCCATCGAGAATTCTACGAGGACTCGCATAGTTATCGCTGATACGAAGATCCATATACTTGGATCCCTTGTTAACATCAAGGTTGCTCGGGATTCACTCTGTAGTCTTATCTTAGGTTCTCCTGCAGGCAAAGTCTATTCTAAGCTAAGGGCTGTTTCTGCTAGGTTAGCAGAAAGGTATTAGATGGTGCATCGTACCGTTGCAGTTTTGGCCTCGTAATATGTTGTATTGGCTGATTTGTGTGCCTGGGCTCTTAATTGTATCGTTCGAATGAACAAACTTAAAATGCTGAGAGTTTTGTAACAATACATATGCATTGTGTTTAGTTCTGTCTGTTGCCCCC]
[+] EMBL CF340463             [   ATTCCCAAACCCTAGCCTAGGAGAAGACGAGAGCCGACACCCTCCGCCGCCGGCTTCCATTGCCGCCACCGCCACAGCCAACGGGCAGCAGGATGGAGGCTGGCAGGCCGGCGAGCGCTGCCGGGCAGGGAGAATCCTCCTCGTCCTCCGGCGCGATGGCGGTGGACGCGGCTGGCGGCGTGGAGAAGCCGCGGTTCGAGGCGCTGATGCCGAGCGAGATGAGCGGCGGGAGGCCACAGTTCAGGAAGGTGCCGGTGCCGCAGCACCGC TTCGCGCCGCTCAAGAAGGCGTGGATGGATATCTACACCCCCGTCTACGAGCACATGAAGATCGACATCCGCATGAACCTTAAGGCAAGAAGGGTGGAGCTGAAAACAAGACAAGACACACCTGACGTGAGCAACCTTCAGAAGTGTGCAGACTTCGTACATGCTTTTATGCTTGGTTTTGACATCGCCGATGCTGTTGCGCTGCTCCGTCTCGATGACCTGTATGTGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL OS0384A              [      CCGAAACCCTAGCCTAGGAGAAGACGAGAGCCGACACCCTCCGCCGCCGGCTTCCATTGCCGCCACCGCCACAGCCAACGGGCAGCAGGATGGAGGCTGGCAGGCCGGCGAGCGCTGCCGGGCAGGGAGAATCCTCCTCGTCCTCCGGCGCGATGGCGGTGGACGCGGCTGGCGGCGTGGAGAAGCCGCGGTTCGAGGCGCTGATGCCGAGCGAGATGAGCGGCGGGAGGCCACAGTTCAGGAAGGTGCCGGTGCCGCAGCA CGCTTTCGCGCCGCTCAAGAAGGCGTGGATGGATATCTACAACCNCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CF304544             [      gCCAAACCCTAGCCTAGGAGAAGACGAGAGCCGACACCCTCCGCCGCCGGCTTCCATTGCCGCCACCGCCACAGCCAACGGGCAGCAGGATGGAGGCTGGCAGGCCGGCGAGCGCTGCCGGGCAGGGAGAATCCTCCTCGTCCTCCGGCGCGATGGCGGTGGACGCGGCTGGCGGCGTGGAGAAGCCGCGGTTCGAGGCGCTGATGCCGAGCGAGATGAGCGGCGGGAGGCCACAGTTCAGGAAGGTGCCGGTGCCGCAGCACCGC TTCGCGCCGCTCAAGAAGGCGTGGATGGATATCTACACCCCCGTCTACGAGCACATGAAGATCGACATCCGCATGAACCTTAAGGCAAGAAGGGTGGAGCTGAAAACAAGACAAGACACACCTGACGTGAGCAACCTTCAGAAGTGTGCAGACTTCGTACATGCTTTTATGCTTGGTTTTGACATCGCCGATGCTGTTGCGCTGCTCCGTCTCGATGACCTGTATGTGGA                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL C73991               [          AACCCTAGCCTAGGAGAAGACGAGAGCCGACACCCTCCGCCGCCGGCTTCCATTGCCGCCACCGCCACAGCCAACGGGCAGCAGGATGGAGGCTGGCAGGCCGGCGAGCGCTGCCGGGCAGGGAGAATCCTCCTCGTCCTCCGGCGCGATGGCGGTGGACGCGGCTGGCGGCGTGGAGAAGCCGCGGTTCGAGGCGCTGATGCCGAGCGAGATGAGCGGCGGGAGGCCACAGTTCAGGAAGGTGCCGGTGCCGCAGCA CGCTTTCGNGCCGNTCAAGAAGGCGTGGATGGATATCTACAACCCCGTCTACGAGCACATGAAGATCG CATCCGCATGAACCTTAAGGCAAGAAGGGTGGAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL OSC15311             [               TAGCCTAGGAGAAGACGAGAGCCGACACCCTCCGCCGCCGGCTTCCATTGCCGCCACCGCCACAGCCAACGGGCAGCAGGATGGAGGCTGGCAGGCCGGCGAGCGCTGCCGGGCAGGGAGAATCCTCCTTGTCCTCCGGCGCGATGGCGGTGGACGCGGCTGGCGGCGTGGAGAAGCCGCGGTTCGAGGCGCTGATGCCGAGCGAGATGAGCGGCGGGAGGCCACAGTTCAGGAAGGTGCCGGTGCCGCAGCA CGCTTTCGCGCCGCTCAAGAAGGCGTGGATGGATATCTACAACCCCGTCTACGAGCACATGAAGATCGACATCCGCATGAACCTTAAGGCAAGAAGGGTGGAGTTGAAAACAAGACAAGACACA CTTACGTGAGCAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL OSS2505A             [                 GCCTAGGAGAAGACGAGAGCCGACACCCTCCGCCGCCGGCTTCCATTGCCGCCACCGCCACAGCCAACGGGCAGCAGGATGGAGGCTGGCAGGCCGGCGAGCGCTGCCGGGCAGGGAGAATCCTCCTCGTCCTCCGGCGCGATGGCGGTGGACGCGGCTGGCGGCGTGGAGAAGCCGCGGTTCGAGGCGCTGATGCCGAGCGAGATGAGCGGCGGGAGGCCACAGTTCAGGAAGGTGCCGGTGCCGCAGCA CGCTTTCGCGCCGCTCAAGAAGGCGTTGATGGATATCTACAACCCCGTCTACGAGCACATGAAGATCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CA999671             [                                                                                                                                                                                                                                                                             CGC TTCGCGCCGCTCAAGAAGGCGTGGATGGATATCTACACCCCCGTCTACGAGCACATGAAGATCGACATCCGCATGAACCTTAAGGCAAGAAGGGTGGAGCTGAAAACAAGACAAGACACACCTGACGTGAGCAACCTTCAGAAGTGTGCAGACTTCGTACATGCTTTTATGCTTGGTTTTGACATCGCCGATGCTGTTGCGCTGCTCCGTCTCGATGACCTGTATGTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AA754213             [                                                                                                                                                                                                                                                                                                             cgagCTACACCCCCGTCTACGAGCACATGAAGATCGACATCCGCATGAACCTTAAGGCAAGAAGGGTGGAGCTGAAAACAAGACAAGACACACCTGACGTGAGCAACCTTCAGAAGTGTGCAGACTTCGTACATGCTTTTATGCTTGGTTTTGACATCGCCGATGCTGTTGCGCTGCTCCGTCTCGATGACCTGTATGTGGATTCCTYTCGAGATCAAGGACGTGAAGACACTGCCGTAGGAGAGCATCTGTCACGTGCTATkygcg                                                                                                                                                                                                                                                                                                                                                                                       ]


>consensus_15095#0 CCGATTCCCAAACCCTAGCCTAGGAGAAGACGAGAGCCGACACCCTCCGCCGCCGGCTTC CATTGCCGCCACCGCCACAGCCAACGGGCAGCAGGATGGAGGCTGGCAGGCCGGCGAGCG CTGCCGGGCAGGGAGAATCCTCCTCGTCCTCCGGCGCGATGGCGGTGGACGCGGCTGGCG GCGTGGAGAAGCCGCGGTTCGAGGCGCTGATGCCGAGCGAGATGAGCGGCGGGAGGCCAC AGTTCAGGAAGGTGCCGGTGCCGCAGCACGCTTCGCGCCGCTCAAGAAGGCGTGGATGGA TATCTACACCCCCGTCTACGAGCACATGAAGATCGACATCCGCATGAACCTTAAGGCAAG AAGGGTGGAGCTGAAAACAAGACAAGACACACCTGACGTGAGCAACCTTCAGAAGTGTGC AGACTTCGTACATGCTTTTATGCTTGGTTTTGACATCGCCGATGCTGTTGCGCTGCTCCG TCTCGATGACCTGTATGTGGATTCCTTTGAGATCAAGGACGTGAAGACACTCCGAGGAGA GCATCTGTCACGTGCTATTGGCCGCTTGTCAGGAAAAGGAGGCAAGACCAAATATGCCAT CGAGAATTCTACGAGGACTCGCATAGTTATCGCTGATACGAAGATCCATATACTTGGATC CCTTGTTAACATCAAGGTTGCTCGGGATTCACTCTGTAGTCTTATCTTAGGTTCTCCTGC AGGCAAAGTCTATTCTAAGCTAAGGGCTGTTTCTGCTAGGTTAGCAGAAAGGTATTAGAT GGTGCATCGTACCGTTGCAGTTTTGGCCTCGTAATATGTTGTATTGGCTGATTTGTGTGC CTGGGCTCTTAATTGTATCGTTCGAATGAACAAACTTAAAATGCTGAGAGTTTTGTAACA ATACATATGCATTGTGTTTAGTTCTGTCTGTTGCCCCC



consensusID : consensus_15095#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 763
fasta sequence
                              [GTTNCAGGAAAGGTGCCGGTGCCGCAGCCACCNTTCGCGCCGCT-CAAGAAGGCGTGGATGGATATCTACACCCCCGTCTACGAGCACATGAAGATCGACATCCGCATGAA-CCTTAAGGCAAGAAGGGTGGAGCTGAAAA-CAAGACAAGACA-CACCTGACGTGAGCAACCTT-CAGAAGTGT-GCAGACTTCGTACATGCTTTTATGCTTGGTTTTGACATCGCCGATGCTGTTGCGCTGCTCCGTCTCGATGACCTGTATGTGGATTCCTTTGAGATCAAGGACGTGAAGACACTCCGAGGAGAGCATCTGTCACGTGCTATTGGCCGCTTGTCAGGAAAAGGAGGCAAGACCAAATATGCCATCGAGAATTCTACGAGGACTCGCATAGTTATCGCTGATACGAAGATCCATATACTTGGATCCTTTGTTAACATCAAGGTTGCTCGGGATTCACTCTGTAGTCTTATCTTAGGTTCTCCTGCAGGCAAAGTCTATTCTAAGCTAAGGGCTGTTTCTGCTAGGTTAGCAGAAAGGTATTAGATGGTGCATCGTACCGTTGCAGTTTTGGCCTC-GTAATATGTTGTATTGGCTGATTTGTGTGCCTGGGCTCTTAATTGTATCGTTCG-AATGAACAAACTTAAAATGC-TGAGAGTTTTGTAACAATACATATGCATTGTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL C98021               [GTTNCAGGAAAGGTGCCGGTGCCGCAGCCACCNTTCGCGCCGCT CAAGAAGGCGTGGATGGATATCTACACCCCCGTCTACGAGCACATGAAGATCGACATCCGCATGAA CCTTAAGGCAAGAAGGGTGGAGCTGAAAA CAAGACAAGACA CACCTGACGTGAGCAACCTT CAGAAGTGT GCAGACTTCGTACATGCTTTTATGCTTGGTTTTGACATCGCCGATGCTGTTGCGCTGCTCCGTCTCGATGACCTGTATGTGGATTCCTTTGAGATCAAGGACGTGAAGACACTCCGAGGAGAGCATCTGTCACGTGCTATTGGCCGCTTGTCAGGAAAAGGAGGCAAGACCAAATATGCCATCGAGAATTCTACGAGGACTCGCATAGTTATCGCTGATACGAAGATCCATATACTTGGATCCTTTGTTAACATCAAGGTTGCTCGGGATTCACTCTGTAGTCTTATCTTAGGTTCTCCTGCAGGCAAAGTCTATTCTAAGCTAAGGGCTGTTTCTGCTAGGTTAGCAGAAAGGTATTAGATGGTGCATCGTACCGTTGCAGTTTTGGCCTC GTAATATGTTGTATTGGCTGATTTGTGTGCCTGGGCTCTTAATTGTATCGTTCG AATGAACAAACTTAAAATGC TGAGAGTTTTGTAACAATACATATGCATTGTGTTTAGTTCAAAAAAAAA                                                                    ]
[+] EMBL AU029296             [                        CAGCCACCCTTCGCGCCGCTCCAAGAAGGCNTGGATGGATATCTACACCCCCTTCTACGAGCACATGAAGATCGACATCCGCATGAACCCTTAAGGCNAGAAGNGTGGAGCTGAAAACCNAGACAAGACACCACCTGACGTGAGCAACCTTCCAGAAGTGT GCAGACTTCGTACATGCTTTTATGCTTGGTTTTGACATCGCCGATGCTGTTGCGCTGCTCCGTCTCGATGACCTGTATGTGGATTCCTTTGAGATCAAGGACGTGAAGACACTCCGAGGAGAGCATCTGTCACGTGCTATTGGCCGCTTGTCAGGAAAAGGAGGCAAGACCAAATATGCCATCGAGAATTCTACGAGGACTCGCATAGTTATCGCTGATACGAAGATCCATATACTTGGATCCTTTGTTAACATCAAGGTTGCTCGGGATTCACTCTGTAGTCTTATCTTAGGTTCTCCTGCAGGCAAAGTCTATTCTAAGCTAAGGGCTGTTTCTGCTAGGTTAGCAGAAAGGTATTAGATGGTGCATCGTACCGTTGCAGTTTTGGCCTC GTAATATGTTGTATTGGCTGATTTGTGTGCCTGGGCTCTTAATTGTATCGTTCG AATGAACAAACTTAAAATGC TGAGAGTTTTGTAACAATACATATGCATTGTGTTTAGTTCAAAAAAAAAAAAAA                                                               ]
[+] EMBL BI802579             [                                                                                                                                                                        CAACCTT CAGAAGTGTCGCAGACTTCGTACATGCTTTTATGCTTGGTTTTGACATCGCCGATGCTGTTGCGCTGCTCCGTCTCGATGACCTGTATGTGGATTCCTTCGAGATCAAGGACGTGAAGACACTCCGAGGAGAGCATCTGTCACGTGCTATTGGCCGCTTGTCAGGAAAAGGAGGCAAGACC AATATGCCATCGAGAATTCTACCAGGACTCGCATAGTTATCGCTGATACGAAGATCCATATACTTGGATCCTTTGTTAACATCAAGGTTGCTCGGGATTCACTCTGTAGTCTTATCTTAGGTTCTCCTGCAGGCAAAGTCTATTCTAAGCTAAGGGCTGTTTCTGCTAGGTTAGCAGAAAGGTATTAGATGGTGCATCGTACCGTTGCAGTTTTGGCCTC GTAATATGTTGTATTGGCTGATTTGTGTGCCTGGGCTCTTAATTGTATCGTTCG AATGAACGAACTTAAAATGC TGAGAGTTTTGTAACAATACAaaaa                                                                                            ]
[+] EMBL AU174253             [                                                                                                                                                                                                                                                                  CTGTATGTGGATTCCTTTGAGATCAAGGACGTGAAGACACTCCGAGGAGAGCATCTGTCACGTGCTATTGGCCGCTTGTCAGGAAAAGGAGGCAAGACCAAATATGCCATCGAGAATTNTACGAGGACTCGCATAGTTATCGCTGATACGAAGATCCATATACTTGGATCCTTTGTTAACATCAAGGTTGCTCGGGATTCACTCTGTAGTCTTATCTTAGGTTCTCCTGCAGGCAAAGTCTATTNTAAGCTAAGGGCTGTTTNTGCTAGGTTAGCAGAAAGGTATTAGATGGTGCATCGTACCGTTGCAGTTTTGGCCTCNGTAATATGTTGTATTGGCTGATTTGTGTGCCTGGGCTCTTAATTGTATCGTTCG AATGAACAAACTTAAAATGC TGAGAGTTTTGTAACAATACATATGCATTGTGTTTAAAAA                                                                             ]
[-] EMBL CF324734             [                                                                                                                                                                                                                                                                                                                              CGTGCTATTGGCCGCTTGTCAGGAAAAGGAGGCAAGACCAAATATGCCATCGAGAATTCTACGAGGACTCGCATAGTTATCGCTGATACGAAGATCCATATACTTGGATCCTTTGTTAACATCAAGGTTGCTCGGGATTCACTCTGTAGTCTTATCTTAGGTTCTCCTGCAGGCAAAGTCTATTTTAAGCTAAGGGCTGTTTCTGCTAGGTTAGCAGAAAGGTATTAGATGGTGCATCGTACCGTTGCAGTTTTGGCCTC GTAATATGTTGTATTGGCTGATTTGTGTGCCTGGGCTCTTAATTGTATCGTTCG AATGAACAAACTTAAAATGC TGAGAGTTTTGTAACAATAAAAA   A        AAAAAAAAAAAAAAAAAAct                                                              ]
[+] EMBL OSC05671A            [                                                                                                                                                                                                                                                                                                                                                 CAGGAAAAGGAGGCAAGNCCAAATATGCCATCGAGAATTCTACGAGGACTCGCATAGTTATCGCTGATACGAAGATCCATATACTTGGATCCTTTGTTAACATCAAGGTTGCTCGGGATTCACTCTGTAGTCTTATCTTAGGTTCTCCTGCAGGNAAAGTCTATTCTAAGNTAAGGGCTGTTTCTGCTAGGTTAGCAGAAAGGTATTAGATGGTGCATCGTACCGTTGCAGTTTTGGCCTC GTAATATGTTGTATTGGCTGATTTGTGTGCCTGGGCTCTTAATTGTATCGTTCGAAATG ACAAACTTAAAATGCTTGAGAGTTTTGTAACANTACATATGCATTGTGTTTAAAAAAAAA                                                                         ]
[+] EMBL CF331124             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ACTCTGTAGTCTTATCTTAGGTTCTCCTGCAGGCAAAGTCTATTCTAAGCTAAGGGCTGTTTCTGCTAGGTTAGCAGAAAGGTATTAGATGGTGCATCGTACCGTTGCATTTTTGGCCTC GTAATATGTTGTATTGGCTGATTTGTGTGCCTGGGCTCTTAATTGTATCGTTCG AATGAACAAACTTAAAATGC TGAGAGTTTTGTAACAATACATATGCATTGTGTTTAAAAAA                                                                            ]
[-] EMBL CF331125             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CTCTGTAGTCTTATCTTAGGTTCTCCTGCAGGCAAAGTCTATTCTAAGCTAAGGGCTGTTTCTGCTAGGTTAGCAGAAAGGTATTAGATGGTGCATAGTACCGTTGCATTTTTGGCCTC GTAATATGTTGTATTGGCTGATTTGTGTGCCTGGGCTCTTAATTGTATCGTTCG AATGAACAAACTTAAAATGC TGAGAGTTTTGTAACAATACATATGCATTGTGTTTAAAAAAA                                                                           ]
[+] EMBL CF326924             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TGTAGTCTTATCTTAGGTTCTCCTGCAGGCAAAGTCTATTCTAAGCTAAGGGCTGTTTCTGCTAGGTTAGCAGAAAGGTATTAGATGGTGCATCGTACCGTTGCAGTTTTGGCCTC GTAATATGTTGTATTGGCTGATTTGTGTGCCTGGGCTCTTAATTGTATCGTTCG AATGAACAAACTTAAAATGC TGAGAGTTTTGTAACAATACATATGCATTGTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU173547             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TCTTATCTTAGGTTCTCCTGCAGGCAAAGTCTATTCTAAGCTAAGGGCTGTTTCTGCTAGGTTAGCAGAAAGGTATTAGATGGTGCATCGTACCGTTGCAGTTTTGGCCTC GTAATATGTTGTATTGGCTGATTTGTGTGCCTGGGCTCTTAATTGTATCGTTCG AATGAACAAACTTAAAATGC TGAGAGTTTTGTAACAATACATATGCATTGTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAA                                                        ]


>consensus_15095#1 GTTNCAGGAAAGGTGCCGGTGCCGCAGCCACCNTTCGCGCCGCTCAAGAAGGCGTGGATG GATATCTACACCCCCGTCTACGAGCACATGAAGATCGACATCCGCATGAACCTTAAGGCA AGAAGGGTGGAGCTGAAAACAAGACAAGACACACCTGACGTGAGCAACCTTCAGAAGTGT GCAGACTTCGTACATGCTTTTATGCTTGGTTTTGACATCGCCGATGCTGTTGCGCTGCTC CGTCTCGATGACCTGTATGTGGATTCCTTTGAGATCAAGGACGTGAAGACACTCCGAGGA GAGCATCTGTCACGTGCTATTGGCCGCTTGTCAGGAAAAGGAGGCAAGACCAAATATGCC ATCGAGAATTCTACGAGGACTCGCATAGTTATCGCTGATACGAAGATCCATATACTTGGA TCCTTTGTTAACATCAAGGTTGCTCGGGATTCACTCTGTAGTCTTATCTTAGGTTCTCCT GCAGGCAAAGTCTATTCTAAGCTAAGGGCTGTTTCTGCTAGGTTAGCAGAAAGGTATTAG ATGGTGCATCGTACCGTTGCAGTTTTGGCCTCGTAATATGTTGTATTGGCTGATTTGTGT GCCTGGGCTCTTAATTGTATCGTTCGAATGAACAAACTTAAAATGCTGAGAGTTTTGTAA CAATACATATGCATTGTGTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_15095#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 352
fasta sequence
                              [TCGGGGATTTCACCTTCTGGTAAGTCTTATCTTAGGTTCTGCCTTGCAGCAAAGTCTATTCTAAGCTAAGGGCTGTTTCTGCTAGGTTGACAGAAAGGTATTTAGATGGTGCATGCAGTACACAGTGTGCAGTGTTTGGCACTGCAGTGAATGATGGTGTGTGATTCGCCTGATTTGTGTGCCTGGGGCTCTTAATTGTGATGCGTGTCAGAATGGAACACAACTTAAAATGCTGAGAGTTTTGTAACAAATACATATGGCATTGTGTTTAGTTCTGTCTGTGGCCCCCCGGTTTCTGGAAATCTATGGGACGTGCTGCTGCATAATATGTTTGATGGGTGTAAAAAAAAAA]

[+] EMBL BI802608             [TCGGGGATTTCACCTTCTGGTAAGTCTTATCTTAGGTTCTGCCTTGCAGCAAAGTCTATTCTAAGCTAAGGGCTGTTTCTGCTAGGTTGACAGAAAGGTATTTAGATGGTGCATGCAGTACACAGTGTGCAGTGTTTGGCACTGCAGTGAATGATGGTGTGTGATTCGCCTGATTTGTGTGCCTGGGGCTCTTAATTGTGATGCGTGTCAGAATGGAACACAACTTAAAATGCTGAGAGTTTTGTAACAAATACATATGGCATTGTGTTTAGTTCTGTCTGTGGCCCCCCGGTTTCTGGAAATCTATGGGACGTGCTGCTGCATAATATGTTTGATGGGTGTAAAAAAAAAA]


>consensus_15095#2 TCGGGGATTTCACCTTCTGGTAAGTCTTATCTTAGGTTCTGCCTTGCAGCAAAGTCTATT CTAAGCTAAGGGCTGTTTCTGCTAGGTTGACAGAAAGGTATTTAGATGGTGCATGCAGTA CACAGTGTGCAGTGTTTGGCACTGCAGTGAATGATGGTGTGTGATTCGCCTGATTTGTGT GCCTGGGGCTCTTAATTGTGATGCGTGTCAGAATGGAACACAACTTAAAATGCTGAGAGT TTTGTAACAAATACATATGGCATTGTGTTTAGTTCTGTCTGTGGCCCCCCGGTTTCTGGA AATCTATGGGACGTGCTGCTGCATAATATGTTTGATGGGTGTAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15095#0      CCGATTCCCAAACCCTAGCCTAGGAGAAGACGAGAGCCGACACCCTCCGCCGCCGGCTTC 60
consensus_15095#1      ------------------------------------------------------------
consensus_15095#2      ------------------------------------------------------------
                                                                                   

consensus_15095#0      CATTGCCGCCACCGCCACAGCCAACGGGCAGCAGGATGGAGGCTGGCAGGCCGGCGAGCG 120
consensus_15095#1      ------------------------------------------------------------
consensus_15095#2      ------------------------------------------------------------
                                                                                   

consensus_15095#0      CTGCCGGGCAGGGAGAATCCTCCTCGTCCTCCGGCGCGATGGCGGTGGACGCGGCTGGCG 180
consensus_15095#1      ------------------------------------------------------------
consensus_15095#2      ------------------------------------------------------------
                                                                                   

consensus_15095#0      GCGTGGAGAAGCCGCGGTTCGAGGCGCTGATGCCGAGCGAGATGAGCGGCGGGAGGCCAC 240
consensus_15095#1      ------------------------------------------------------------
consensus_15095#2      ------------------------------------------------------------
                                                                                   

consensus_15095#0      AGTTCAGGAA-GGTGCCGGTGCCGCAGC-ACGCTTCGCGCCGCTCAAGAAGGCGTGGATG 298
consensus_15095#1      GTTNCAGGAAAGGTGCCGGTGCCGCAGCCACCNTTCGCGCCGCTCAAGAAGGCGTGGATG 60
consensus_15095#2      ------------------------------------------------------------
                                                                                   

consensus_15095#0      GATATCTACACCCCCGTCTACGAGCACATGAAGATCGACATCCGCATGAACCTTAAGGCA 358
consensus_15095#1      GATATCTACACCCCCGTCTACGAGCACATGAAGATCGACATCCGCATGAACCTTAAGGCA 120
consensus_15095#2      ------------------------------------------------------------
                                                                                   

consensus_15095#0      AGAAGGGTGGAGCTGAAAACAAGACAAGACACACCTGACGTGAGCAACCTTCAGAAGTGT 418
consensus_15095#1      AGAAGGGTGGAGCTGAAAACAAGACAAGACACACCTGACGTGAGCAACCTTCAGAAGTGT 180
consensus_15095#2      ------------------------------------------------------------
                                                                                   

consensus_15095#0      GCAGACTTCGTACATGCTTTTATGCTTGGTTTTGACATCGCCGATGCTGTTGCGCTGCTC 478
consensus_15095#1      GCAGACTTCGTACATGCTTTTATGCTTGGTTTTGACATCGCCGATGCTGTTGCGCTGCTC 240
consensus_15095#2      ------------------------------------------------------------
                                                                                   

consensus_15095#0      CGTCTCGATGACCTGTATGTGGATTCCTTTGAGATCAAGGACGTGAAGACACTCCGAGGA 538
consensus_15095#1      CGTCTCGATGACCTGTATGTGGATTCCTTTGAGATCAAGGACGTGAAGACACTCCGAGGA 300
consensus_15095#2      ------------------------------------------------------------
                                                                                   

consensus_15095#0      GAGCATCTGTCACGTGCTATTGGCCGCTTGTCAGGAAAAGGAGGCAAGACCAAATATGCC 598
consensus_15095#1      GAGCATCTGTCACGTGCTATTGGCCGCTTGTCAGGAAAAGGAGGCAAGACCAAATATGCC 360
consensus_15095#2      ------------------------------------------------------------
                                                                                   

consensus_15095#0      ATCGAGAATTCTACGAGGACTCGCATAGTTATCGCTGATACGAAGATCCATATACTTGGA 658
consensus_15095#1      ATCGAGAATTCTACGAGGACTCGCATAGTTATCGCTGATACGAAGATCCATATACTTGGA 420
consensus_15095#2      ------------------------------------------------------------
                                                                                   

consensus_15095#0      TCCCTTGTTAACATCAAGGTTGCTCGGGATTCACTCTGT----AGTCTTATCTTAGGTTC 714
consensus_15095#1      TCCTTTGTTAACATCAAGGTTGCTCGGGATTCACTCTGT----AGTCTTATCTTAGGTTC 476
consensus_15095#2      ---------------------TCGGGGATTTCACCTTCTGGTAAGTCTTATCTTAGGTTC 39
                                             *  **  *****  * *    *****************

consensus_15095#0      T-CCTGCAGGCAAAGTCTATTCTAAGCTAAGGGCTGTTTCTGCTAGGTTAGCAGAAAGGT 773
consensus_15095#1      T-CCTGCAGGCAAAGTCTATTCTAAGCTAAGGGCTGTTTCTGCTAGGTTAGCAGAAAGGT 535
consensus_15095#2      TGCCTTGCAGCAAAGTCTATTCTAAGCTAAGGGCTGTTTCTGCTAGGTTGACAGAAAGGT 99
                       * ***    ****************************************  *********

consensus_15095#0      ATT-AGATGGTGCAT----CGTACCGT-TGCAGT-TTTGGCCTCGTAAT-----ATGTTG 821
consensus_15095#1      ATT-AGATGGTGCAT----CGTACCGT-TGCAGT-TTTGGCCTCGTAAT-----ATGTTG 583
consensus_15095#2      ATTTAGATGGTGCATGCAGTACACAGTGTGCAGTGTTTGGCACTGCAGTGAATGATGGTG 159
                       *** ***********       ** ** ****** ******   * * *     *** **

consensus_15095#0      TAT----TGGCTGATTTGTGTGCCTGGG-CTCTTAATTGTATCG----TTCGAATG-AAC 871
consensus_15095#1      TAT----TGGCTGATTTGTGTGCCTGGG-CTCTTAATTGTATCG----TTCGAATG-AAC 633
consensus_15095#2      TGTGATTCGCCTGATTTGTGTGCCTGGGGCTCTTAATTGTGATGCGTGTCAGAATGGAAC 219
                       * *     * ****************** ***********   *    *  ***** ***

consensus_15095#0      A-AACTTAAAATGCTGAGAGTTTTGTAACAA-TACATATG-CATTGTGTTTAGTTCTGTC 928
consensus_15095#1      A-AACTTAAAATGCTGAGAGTTTTGTAACAA-TACATATG-CATTGTGTTTAAAAAAAAA 690
consensus_15095#2      ACAACTTAAAATGCTGAGAGTTTTGTAACAAATACATATGGCATTGTGTTTAGTTCTGTC 279
                       * ***************************** ******** ***********        

consensus_15095#0      TGTTGCCCCC-------------------------------------------------- 938
consensus_15095#1      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 750
consensus_15095#2      TGTGGCCCCCCGGTTTCTGGAAATCTATGGGACGTGCTGCTGCATAATATGTTTGATGGG 339
                                                                                   

consensus_15095#0      -------------
consensus_15095#1      AAAAAAAAAAAAA 763
consensus_15095#2      TGTAAAAAAAAAA 352
                                    




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)