These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15099#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 1518 fasta sequence [CACCAATCCTCTTCTTCCTCTCCGGCCGCCTCCTTCCTCACCATGGCGCTCGCGCTGCGCTGCCCCGCCGCTGCCTCGCCGTCGCCAGCCAAGAGCACCTTCCCGCCCTCCTCCTCCCCGCCGCCGTCGAGGCTCCCGAGGAGGCCGCCCGCCAGCTGCAGGTGCTACTACTACGGCGACGGCGGTGGCTTCCGCAAGAACTACGACCACATCCCCAAGCAGTTCCGCGAGGAGAACCTCAAAGATGGCCTGATGGATAATTACAAGAATGTTCCTCAATTCCTTTATGGCTTAAGCCCTGCTCAGATCGAAATGTTTATGAACGATGATAATCCATATGATCGGCAATCACAGAGAGTTACAGA-GGAAAGCATTTCTGCTTCTA-GGAGCTATGATGAATTTGGCATGTACAACTTGTCCGGTATGCATGAGGGCCCTGCAGGTTACAGCATGGGTATGGGAATGGGCACCATGAGCATGGGCAGGGCAGGGCGAGGATATAGAAGAATGAGAAGTTCAGCTCCAGATCTGCCATCATTGCTATTGGACTCTCGAATTATATTCCTTGGAATGCCTATTGTTCCAGCAGTAACAGAGCTTATTGCTGCGCAATTTCTGTGGCTAGATTATGATGACCGCACCAAGCCAATTTACTTGTATATAAACTCCACAGGAACCATGGATGAAAACAATGAGCTGGTTGCATCTGAAACTGATGCATTTGCAATTGCTGATTTTATCAATCG--AAGCAAATCCAAGGTCTACACAATCAATCTTAGCATGGCATATGGTCAGGCTGCAATGCTTCTGTCCCTTGGCGTCAAGGGTAAAAGAGGAGTGCTACCAAATTCAATCACTAAACTGTACCTGCCTAAGGTCCACAAATCTGGTGGAGCTGCTATTGACATGTGGATTAAGGCAAAAGAGTTAGACACGAACACGGATTACTACCTTGAACTGTTGTCAAAAGGAGTTGGAAAACCAAAGGAAGAGCTCGCAGAGTTTCTCAAAGGTCCAAGGTACTTCCGTGCGCAGGAGGCCATCGATTATGGGCTTGCAGATACAATCTTGCACTCTTTGGATGGTTCCTTCAAACCAAAGGATCTGACCGCGCAGTTGGCCAAAGCACAGGAGATGCGGCAATCGGGGAAGCGCCCAGCAGCTGGAGCTGGGCGATGGTCAACTCCAAGTGTCCCTAGATAGACTAGAACGTCAGATCAAAACCATACACTAGCTTAATATCGACGATGATACGCGTGGTTGTCCTATTCAGAGCAGCCTACCTGTTACATTTGCATGCAAGAAGAAATCCTGTCAGGGTTTGGAATAGATTCAGGCTGACGAAAACGTTGCTTACTGCAGTGGCTTTTGTGTTATTGGGTCATCTATGAATACGATGAATATGTAGTTTATGCTGCCTTCCTGCCAAGGTTGTTGTATTTTTCAGATAGAATTCACTAGTGGAGATGGTAATCCAGTAATCCATGTGACCAAGTATTCTTCTTAAAAAAAAAAAAA] [+] EMBL AK071333 [CACCAATCCTCTTCTTCCTCTCCGGCCGCCTCCTTCCTCACCATGGCGCTCGCGCTGCGCTGCCCCGCCGCTGCCTCGCCGTCGCCAGCCAAGAGCACCTTCCCGCCCTCCTCCTCCCCGCCGCCGTCGAGGCTCCCGAGGAGGCCGCCCGCCAGCTGCAGGTGCTACTACTACGGCGACGGCGGTGGCTTCCGCAAGAACTACGACCACATCCCCAAGCAGTTCCGCGAGGAGAACCTCAAAGATGGCCTGATGGATAATTACAAGAATGTTCCTCAATTCCTTTATGGCTTAAGCCCTGCTCAGATCGAAATGTTTATGAACGATGATAATCCATATGATCGGCAATCACAGAGAGTTACAGA GGAAAGCATTTCTGCTTCTA GGAGCTATGATGAATTTGGCATGTACAACTTGTCCGGTATGCATGAGGGCCCTGCAGGTTACAGCATGGGTATGGGAATGGGCACCATGAGCATGGGCAGGGCAGGGCGAGGATATAGAAGAATGAGAAGTTCAGCTCCAGATCTGCCATCATTGCTATTGGACTCTCGAATTATATTCCTTGGAATGCCTATTGTTCCAGCAGTAACAGAGCTTATTGCTGCGCAATTTCTGTGGCTAGATTATGATGACCGCACCAAGCCAATTTACTTGTATATAAACTCCACAGGAACCATGGATGAAAACAATGAGCTGGTTGCATCTGAAACTGATGCATTTGCAATTGCTGATTTTATCAATCG AAGCAAATCCAAGGTCTACACAATCAATCTTAGCATGGCATATGGTCAGGCTGCAATGCTTCTGTCCCTTGGCGTCAAGGGTAAAAGAGGAGTGCTACCAAATTCAATCACTAAACTGTACCTGCCTAAGGTCCACAAATCTGGTGGAGCTGCTATTGACATGTGGATTAAGGCAAAAGAGTTAGACACGAACACGGATTACTACCTTGAACTGTTGTCAAAAGGAGTTGGAAAACCAAAGGAAGAGCTCGCAGAGTTTCTCAAAGGTCCAAGGTACTTCCGTGCGCAGGAGGCCATCGATTATGGGCTTGCAGATACAATCTTGCACTCTTTGGATGGTTCCTTCAAACCAAAGGATCTGACCGCGCAGTTGGCCAAAGCACAGGAGATGCGGCAATCGGGGAAGCGCCCAGCAGCTGGAGCTGGGCGATGGTCAACTCCAAGTGTCCCTAGATAGACTAGAACGTCAGATCAAAACCATACACTAGCTTAATATCGACGATGATACGCGTGGTTGTCCTATTCAGAGCAGCCTACCTGTTACATTTGCATGCAAGAAGAAATCCTGTCAGGGTTTGGAATAGATTCAGGCTGACGAAAACGTTGCTTACTGCAGTGGCTTTTGTGTTATTGGGTCATCTATGAATACGATGAATATGTAGTTTATGCTGCCTTCCTGCCAAGGTTGTTGTATTTTTCAGATAGAATTCACTAGTGGAGATGGTAATCCAGTAATCCATGTGACCAAGTATT ] [+] EMBL CB645385 [ CCAATCCTCTTCTTCCTCTCCGGCCGCCTCCTTCCTCACCATGGCGCTCGCGCTGCGCTGCCCCGCCGCTGCCTCGCCGTCGCCAGCCAAGAGCACCTTCCCGCCCTCCTCCTCCCCGCCGCCGTCGAGGCTCCCGAGGAGGCCGCCCGCCAGCTGCAGGTGCTACTACTACGGCGACGGCGGGGGCTTCCGCAAGAACTACGACCACATCCCCAAGCAGTTCCGCGAGGAGAACCTCAAAGATGGCCTGATGGATAATTACAAGAATGTTCCTCAATTCCTTTATGGCTTAAGCCCTGCTCAGATCGAAATGTTTATGAACGATGATAATCCATATGATCGGCAATCACAGAGAGTTACAGA GGAAAGCATTTCTGCTTCTA GGAGCTATGATGAATTTGGCATGTACAACTTGTCCGGTATGCATGAGGGCCCTGCAGGTTACAGCATGGGTATGGGAATGGGCACCATGAGCATGGGCAGGGCAGGGCGAGGATATAGAAGAATGAGAAGTTCAGCTCCAGATCTGCCATCATTGCTATTGGACTCTCGAATTATATTCCTTGGAATGCCTATTGTTCCAGCAGTAACAGAGCTTATTGCTGCGCAATTTCTGTGGCTAGATTATGATGACCGCACCAAGCCAATTTACTTGTATATAAACTCCACAGGAACCATGGATGAAAACAATGAGCTGGTTGCATCTGAAACTGATGCATTTGCAATTGCTGATTTTATCAATCG AAGCAAATCCAAGGTCTACACAATCAATCTTAGCATGGCATATGGTCACGCTGC ] [+] EMBL CB671423 [ CCAATCCCCTTCTTCCTCTCCGGCCGCCTCCTTCCTCACCATGGCGCTCGCGCTGCGCTGCCCCGCCGCTGCCTCGCCGTCGCCAGCCAAGAGCACCTTCCCGCCCTCCTCCTCCCCGCCGCCGTCGAGGCTCCCGAGGAGGCCGCCCGCCAGCTGCAGGTGCTACTACTACGGCGACGGCGGTGGCTTCCGCAAGAACTACGACCACATCCCCAAGCAGTTCCGCGAGGAGAACCTCAAAGATGGCCTGATGGATAATTACAAGAATGTTCCTCAATTCCTTTATGGCTTAAGCCCTGCTCAGATCGAAATGTTTATGAACGATGATAATCCATATGATCGGCAATCACAGAGAGTTACAGA GGAAAGCATTTCTGCTTCTA GGAGCTATGATGAATTTGGCATGTACAACTTGTCCGGTATGCATGAGGGCCCTGCAGGTTACAGCATGGGTATGGGAATGGGCACCATGAGCATGGGCAGGGCAGGGCGAGGATATAGAAGAATGAGAAGTTCAGCTCCAGATCTGCCATCATTGCTATTGGACTCTCGAATTATATTCCTTGGAATGCCTATTGTTCCAGCAGTAACAGAGCTTATTGCTGCGCAATTTCTGTGGCTAGATTATGATGACCGCACCAAGCCAATTTACTTGTATATAAACTCCACAGGAACCATGGATGAAAACAATGAGCTGGTTGCATCTGAAACTGATGCATTTGCAATTGCTGATTTTATCAATCGAAAAGC AATCC AGGTCTACACAATCAATCTTAGCATGGCATATGGTCAGGCTG ] [+] EMBL OSC677 [ TCCTCTTCTTCCTCTCCGGCCGCCTCCTTCCTCACCATGGCGCTCGCGCTGCGCTGCCCCGCCGCTGCCTCGCCGTCGCCAGCCAAGAGCACCTTCCCGCCCTCCTCCTCCNCGCCGCCGTCGAGGCTCCCGAGGAGGCCGCCCGCCAGCTGCAGGTGCTACTACTACGGGGACGGCGGTGGCTTCCGCAAGAACTACGACCACATCCCCAAGCAGTTCCGCGAGGAGAACCTCAAAGATGGCCTGATGGATAATTACAAGAATGTTCCTCAATTCCTTTATGGCTTAAGCCCTGCTCAGATCGAAATGTTTATGAACGATGATAATCCATATGATCGGCAATTACAGAGAGTTACAGAGGGAAAGCATTTTTGTTTCTANGGNGCTATGA ] [+] EMBL AU197699 [ TCTTCCTCTCCGGCCGCCTCCTTCCTCACCATGGCGCTCGCGCTGCGCTGCCCCGCCGCTGCCTCGCCGTCGCCAGCCAAGAGCACCTTCCCGCCCTCCTCCTCCCCGCCGCCGTCGAGGCTCCCGAGGAGGCCGCCCGCCAGCTGCAGGTGCTACTACTACGGCGACGGCGGTGGCTTCCGCAAGAACTACGACCACATCCCCAAGCAGTTCCGCGAGGAGAACCTCAAAGATGGCCTGATGGATAATTACAAGAATGTTCCTCAATTCCTTTATGGCTTAAGCCCTGCTCAGATCGAAATGTTTATGAACGATGATAATCCATATGATCGGCAATCACAGAGAGTTACAGA GGAAAGCATTTCTGCTTCTA GGAGCTATGATGAATTTGGCATGTACAACTTGTCCGGTATGCATGAGGGCCCTGCAGG ] [+] EMBL CB682821 [ TTCCTCTCCGGCCGCCTCCTTCCTCACCATGGCGCTCGCGCTGCGCTGCCCCGCCGCTGCCTCGCCGTCGCCAGCCAAGAGCACCTTCCCGCCCTCCTCCTCCCCGCCGCCGTCGAGGCTCCCGAGGAGGCCGCCCGCCAGCTGCAGGTGCTACTACTACGGCGACGGCGGTGGCTTCCGCAAGAACTACGACCACATCCCCAAGCAGTTCCGCGAGGAGAACCTCAAAGATGGCCTGATGGATAATTACAAGAATGTTCCTCAATTCCTTTATGGCTTAAGCCCTGCTCAGATCGAAATGTTTATGAACGATGATAATCCATATGATCGGCAATCACAGAGAGTTACAGA GGAAAGCATTTCTGCTTCTA GGAGCTATGATGAATTTGGCATGTACAACTTGTCCGGTATGCATGAGGGCCCTGCAGGTTACAGCATGGGTATGGGAATGGGCACCATGAGCATGGGCAGGGCAGGGCGAGGATATAGAAGAATGAGAAGTTCAGCTCCAGATCTGCCATCATTGCTATTGGACTCTCGAATTATATTCCTTGGAATGCCTATTGTTCCAGCAGTAACAGAGCTTATTGCTGCGCAATTTCTGTGGCTAGATTATGATGACCGCACCAAGCCAATTTACTTGTATATAAACTCCACAGGAACCATGGATGAAAACAATGAGCTGGTTGCATCTGAAACTGATGCATTTGCAATTGCTGATTTTATCAATCG AAGCAAATCCAAGGTCTACACAATCAATCTTAGCATGGCATATGGTCAGGCTGC ] [+] EMBL D42624 [ CCTCCTTCCTCACCATGGCGCT CGCTGCGCTGCCCCGCCGCTGCCTCGCCGTCGCCAGCCAAGAGCACCTTNCNNCCCTCCTCCTCCCC NCNNNGTCGA GCTCCCGAGGAGGCCGCCCGCCAGCTGCAGGTGCTACTACTACGGCGA GGCGGTGGCTTCCG AAGAACTACGACCACAT CCCAAGCAGTTCCGCGA GAGAACCTCAAAGATGGCCTGATGGATAATTACAAGAATGTTCCTCAATTCCTTTATGGCTTAAG CCTGCTCAGATCGAAATGTTTA ] [+] EMBL AU174881 [ TCCTTCCTCACCATGGCGCTCGCGCTGCGCTGCCCCGCCGCTGCCTCGCCGTCGCCAGCCAAGAGCACCTTCCCGCCCTCCTCCTCCCCGCCGCCGTCGAGGCTCCCGAGGAGGCCGCCCGCCAGCTGCAGGTGCTACTACTACGGCGACGGCGGTGGCTTCCGCAAGAACTACGACCACATCCCCAAGCAGTTCCGCGAGGAGAACCTCAAAGATGGCCTGATGGATAATTACAAGAATGTTCCTCAATTCCTTTATGGCTTAAGCCCTGCTCAGATCGAAATGTTTATGAACGATGATAATCCATATGATCGGCAATCACAGAGAGTTACAGA GGAAAGCATTTCTGCTTCTA GGAGCTATGATGAATTTGGCATGTACAACTTGTCCGGTAT ] [+] EMBL CF312267 [ TGGGCAGGGCAGGGCGAGGATATAGAAGAATGAGAAGTTCAGCTCCAGATCTGCCATCATTGCTATTGGACTCTCGAA TATATTCCTTGGAATGCCTATTGTTCCAGCAGTAACAGAGCTTATTGCTGCGCAATTTCTGTGGCTAGATTATGATGACCGCACCAAGCCAATTTACTTGTATATAAACTCCACAGGAACCATGGATGAAAACAATGAGCTGGTTGCATCTGAAACTGATGCATTTGCAATTGCTGATTTTATCAATCG AAGCAAATCCAAGGTCTACACAATCAATCTTAGCATGGCATATGGTCAGGCTGCAATGCTTCTGTCCCTTGGCGTCAAGGGTAAAAGAGGAGTGCTACCAAATTCAATCACTAAACTGTACCTGCCTAAGGTCCACAAATCTGGTGGAGCTGCTATTGACATGTGGATTAAGGCAAAAGAGTTAGACACGAACACGGATTACTACCTTGAACTGTTGTCAAAAGGAGTTGGAAAACCAAAGGAAGAGCTCGC ] [-] EMBL CB660165 [ ACAATGAGCTGGTTGCATCTGAAACTGATGCATTTGCAATTGCTGATTTTATCAATCG AAGCAAATCCAAGGTCTACACAATCAATCTTAGCATGGCATATGGTCAGGCTGCAATGCTTCTGTCCCTTGGCGTCAAGGGTAAAAGAGGAGTGCTACCAAATTCAATCACTAAACTGTACCTGCCTAAGGTCCACAAATCTGGTGGAGCTGCTATTGACATGTGGATTAAGGCAAAAGAGTTAGACACGAACACGGATTACTACCTTGAACTGTTGTCAAAAGGAGTTGGAAAACCAAAGGAAGAGCTCGCAGAGTTTCTCAAAGGTCCAAGGTACTTCCGTGCGCAGGAGGCCATCGATTATGGGCTTGCAGATACAATCTTGCACTCTTTGGATGGTTCCTTCAAACCAAAGGATCTGACCGCGCAGTTGGCCAAAGCACAGGAGATGCGGCAATCGGGGAAGCGCCCAGCAGCTGGAGCTGGGCGATGGTCAACTCCAAGTGTCCCTAGATAGACTAGAACGTCAGATCAAAACCATACACTAGCTTAATATCGACGATGATACGCGTGGTTGTCCTATTCAGAGCAGCCTACCTGTTACATTTGCATGCAAGAAGAAATCCTGTCAGGGTTTGGAATAGATTCAGGCTGAGGAAAACGTTGCTTACTGCAGTGGCTTTTGTGTTATTGGGTCATCTATGAATACGAGGAATATGTAGTTTATGCTGCCTTCCTGCCAAGGTTGTTGTATTTTTCAGATAGAATTCACTAGTGGtttt ] [+] EMBL D43589 [ AAGCAAATCCAAGGTCTACACAATCAATCTTAGCATGGCATATGGTCAGGCTGCAATGCTTCTGTCCCTTGGCGTCAAGGGTAAAAGAGGAGTGCTACCAAATTCAATCACTAAACTGTACCTGCCTAAGGTCCACAAATCTGGTGGAGCTGCTATTGACATGTGGATTAAGGCAAAAGAGTTAGACACGAACACGGATTACTACCTTGAACTGTTGTCAAAAGGAGTTGGAAAACCAAAGGAAGAGCTCGCAGAGTTTCTCAAAGGTCCAAGGTACTTCCGTGCGCAGGAGGCCATCGATTATGGGCTTGCAGATACAATCTTGCACTCTTTGGGTGGTTCCTTCAAACCA ] [-] EMBL CB671424 [ TATGGTCAGGCTGCAATGCTTCTGTCCCTTGGCGTCAAGGGTAAAAGAGGAGTGCTACCAAATTCAATCACTAAACTGTACCTGCCTAAGGTCCACAAATCTGGTGGAGCTGCTATTGACATGTGGATTAAGGCAAAAGAGTTAGACACGAACACGGATTACTACCTTGAACTGTTGTCAAAAGGAGTTGGAAAACCAAAGGAAGAGCTCGCAGAGTTTCTCAAAGGTCCAAGGTACTTCCGTGCGCAGGAGGCCATCGATTATGGGCTTGCAGATACAATCTTGCACTCTTTGGATGGTTCCTTCAAACCAAAGGATCTGACCGCGCAGTTGGCCAAAGCACAGGAGATGCGGCAATCGGGGAAGCGCCCAGCAGCTGGAGCTGGGCGATGGTCAACTCCAAGTGTCCCTAGATAGACTAGAACGTCAGATCAAAACCATACACTAGCTTAATATCGACGATGATACGCGTGGTTGTCCTATTCAGAGCAGCCTACCTGTTACATTTGCATGCAAGAAGAAATCCTGTCAGGGTTTGGAATAGATTCAGGCTGACGAAAACGTTGCTTACTGCAGTGGCTTTTGTGTTATTGGGTCATCTATGAATACGATGAATATGTAGTTTATGCTGCCTTCCTGCCAAGGTTGTTGTATTTTTCAGATAGAATTCACTAGTGGAGATGAAGGTCCAGTAATCCATGTGACCAAGTATTCTTCTCATTAAAAGGAAA ] [+] EMBL AA754475 [ acaTTCCTCNNAGGTCCCCCGTACTTCCGTGCGCANGAGGCCATCGATTATGGGCTTGCAGATACAATCTTGCACTCTTTGGATGGTTCCTTCAAACCAAAGGATCTGACCGCGCAGTTGGCCAAAGCACAGGAGATGCGGCAATCGGGGAAGCGCCCANCAGCTGGAGCTGGGCGATGGTCAACTCCCAGTGTCCCTAGATAGACTAGAACGTCAGATCAAAACCATACACTAGCTTAATATCGACGATNATACGCGTGGTTGTCCTATTCAGAGCAGCCTACCTGTTACATTTGCATGCAAGAANAAATCCTGTCNNGGTTTGGAATAGATTCAGGCTGACGAAAACGTTGCTTACTGCAGTGGCTTTTGTGTTATTGGGTCATCTATGAATACCATGAATATGTAGTTTATGCTGCCTTCCTGCCNAGGTTGTTGTATTTTTCAGATAGAATTCACTAGTGGAGATGGTNATCCAGTAATCCATGTGACCAAG ] [+] EMBL AU057674 [ GTGCGCAGGAGGCCATCGATTATGGGCTTGCAGATACAATCTTGCACTCTTTGGATGGTTCCTTCAAACCAAAGGATCTGACCGCGCAGTTGGCCAAAGCACAGGAGATGCGGCAATCGGGGAAGCGCCCAGCAGCTGGAGCTGGGCGATGGTCAACTCCAAGTGTCCCTAGATAGACTAGAACGTCAGATCAAAACCATACACTAGCTTAATATCGACGATGATACGCGTGGTTGTCCTATTCAGAGCAGCCTACCTGTTACATTTGCATGCAAGAAGAAATCCTGTCAGGGTTTGGAATAGATTCAGGCTGACGAAAACGTTGCTTACTGCAGTGGCTTTTGTGTTATTGGGTCATCTATGAATACGATGAATATGTAGTTTATGCTGCCTTCCTGCCAAGGTTGTTGTATTTTTCAGATAGAATTCACTAGTGGAGATGGTAATCCAGTAATCCATGTGACCAAGTATTCTTCTTAAAAAAAAAAA ] [+] EMBL AU197700 [ GTTCCTTCAAACCAAAGGATCTGACCGCGCAGTTGGCCAAAGCACAGGAGATGCGGCAATCGGGGAAGCGCCCAGCAGCTGGAGCTGGGCGATGGTCAACTCCAAGTGTCCCTAGATAGACTAGAACGTCAGATCAAAACCATACACTAGCTTAATATCGACGATGATACGCGTGGTTGTCCTATTCAGAGCAGCCTACCTGTTACATTTGCATGCAAGAAGAAATCCTGTCAGGGTTTGGAATAGATTCAGGCTGACGAAAACGTTGCGTACTGCAGTGGCTTTTGTGTTATTGGGTCATCTATGAATACGATGAATATGTAGTTTATGCTGCCTTCCTGCCAAGGTTGTTGTATTTTTCAGATAGAATTCACTAGTGGAGATGGTAATCCAGTAATCCATGTGACCAAGTATTNTTNTTAAAAAAAAAAAAA] consensusID : consensus_15099#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1391 fasta sequence [GGGGAATAAGCTTGGGGCCGCTCCAACATCAGAATGCCAAGAGCACCTTCCCGCCCTCCTCCTCCCCGCCGCCGTCGAGGCTCCCGAGGAGGCCGCCCGCCAGCTGCAGGTGCTACTACTACGGCGACGGCGGTGGCTTCCGCAAGAACTACGACCACATCCCCAAGCAGTTCCGCGAGGAGAACCTCAAAGATGGCCTGATGGATAATTACAAGAATGTTCCTCAATTCCTTTATGGCTTAAGCCCTGCTCAGATCGAAATGTTTATGAACGATGATAATCCATATGATCGGCAATCACAGAGAGCTACAGAGGAAAGCATTTCTGCTTCTAGGAGCTATGATGAATTTGGCATGTACAACTTGTCCGGTATGCATGAGGGCCCTGCAGGTTACAGCATGGGTATGGGAATGGGCACCATGAGCATGGGCAGGGCAGGGCGAGGATATAGAAGAATGAGAAGTTCAGCTCCAGATCTGCCATCATTGCTATTGGACTCTCGAATTATATTCCTTGGAATGCCTATTGTTCCAGCAGTAACAGAGCTTATTGCTGCGCAATTTCTGTGGCTAGATTATGATGACCGCACCAAGCCAATTTACTTGTATATAAACTCCACAGGAACCATGGATGAAAACAATGAGCTGGTTGCATCTGAAACTGATGCATTTGCAATTGCTGATTTTATCAATCGAAGCAAATCCAAGGTCTACACAATCAATCTTAGCATGGCATATGGTCAGGCTGCAATGCTTCTGTCCTTGGGCGTCNAGGGTTAAANAAGAGTGCTACCAAATTCAATCACTAAACTGTACCTGCCTAAGGTCCACAAATCTGGTGGAGCTGCTATTGACATGTGGATTAAGGCAAAAGAGTTAGACACGAACACGGATTACTCCCTTGAACTGTTGTCAAAAGGAGTTGGAAAACCAAAGGAAGAGCTCGCAGAGTTTCTCAAAGGTCCAAGGTACTTCCGTGCGCAGGAGGCCATCGATTATGGGCTTGCAGATACAATCTTGCACTCTTTGGATGGTTCCTTCAAACCAAAGGATCTGACCGCGCAGTTGGCCAAAGCACAGGAGATGCGGCAATCGGGGAAGCGCCCAGCAGCTGGAGCTGGGCGATGGTCAACTCCAAGTGTCCCTAGATAGACTAGAACGTCAGATCAAAACCATACACTAGCTTAATATCGACGATGATACGCGTGGTTGTCCTATTCAGAGCAGCCTACCTGTTACATTTGCATGCAAGAAGAAATCCTGTCAGGGTTTGGAATAGATTCAGGCTGACGAAAACGTTGCTTACTGCAGTGGCTTTTGTGTTATTGGGTCATCTATGAATACGATGAGGAGGTAGTTTATGCTGCCTTCCTGCCAAAAAAAATAAAAAGA] [+] EMBL BI305258 [GGGGAATAAGCTTGGGGCCGCTCCAACATCAGAATGCCAAGAGCACCTTCCCGCCCTCCTCCTCCCCGCCGCCGTCGAGGCTCCCGAGGAGGCCGCCCGCCAGCTGCAGGTGCTACTACTACGGCGACGGCGGTGGCTTCCGCAAGAACTACGACCACATCCCCAAGCAGTTCCGCGAGGAGAACCTCAAAGATGGCCTGATGGATAATTACAAGAATGTTCCTCAATTCCTTTATGGCTTAAGCCCTGCTCAGATCGAAATGTTTATGAACGATGATAATCCATATGATCGGCAATCACAGAGAGTTACAGAGGAAAGCATTTCTGCTTCTAGGAGCTATGATGAATTTGGCATGTACAACTTGTCCGGTATGCATGAGGGCCCTGCAGGTTACAGCATGGGTATGGGAATGGGCACCATGAGCATGGGCAGGGCAGGGCGAGGATATAGAAGAATGAGAAGTTCAGCTCCAGATCTGCCATCATTGCTATTGGACTCTCGAATTATATTCCTTGGAATGCCTATTGTTCCAGCAGTAACAGAGCTTATTGCTGCGCAATTTCTGTGGCTAGATTATGATGACCGCACCAAGCCAATTTACTTGTATATAAACTCCACAGGAACCATGGATGAAAACAATGAGCTGGTTGCATCTGAAACTGATGCATTTGCAATTGCTGATTNTATCAATCGAAGCANATCCCAAGTCTACACAATCAATCTTAGCATGGCATATGGTCAGGCTGCAATGCTT ] [+] EMBL CB660166 [ ATTACAAGAATGGGCCTCGATTCCTTTATGGCTTAAGCCCTGGTCAGATCGAAATGTGTATGAACGATGATAATCCATATGATCGGCAATCACAGAGAGCTACACAGGAGAGCATTTCTGCTTCGAGGAGCTATGATGAATTTGGCATGGGCAACTTGTCCGGAATGCATGAGGGCCCTGCAGGTTACAGCATGGGTATGGGAATGGGCACCATGAGCATGGGCACGGCAGGGAGAGGATATAAAATAATGATAAGGTCATCTCCATATCTGCCATCATTGCTATTGGACTCTCGAATTGTATTCCTTGGAATGCC ] [+] EMBL AA753234 [ cggttgagCAGAGGAAA CATTTCTGCTTCTANGAACTATGATTTTTTTGGCATGTACAACTTGTCCGGTATGCATGAGGGCCCTGCANGTNACAGCNNGGGTATGGGAATGGGCACCATGAGCATGGGCAGGGCAGGGCGAGGATATATAANAATGAGAAGTTCAGCTCCAGATCTGCCATCATTGCTATTGGACTCTCGAATTATATTCCTTGGAATGCCTATTGTTCCAGCAGTAACAGAACTTATTGCTGCGCAATTTCTGTGGCTAGATTATGATGACCGCACCAAGCCAATTTACTTGTATATAAACTCCACAGGAACCATGGATGAAAACAATGAGCTGGTTGCATCTGAAACTGATGCATTTGCAATTGCTGATTTTATCNATCGAAGCAAATCCAAGGTCTACACNATCNATCTTAGCATGGCATATGGTCAGGCTGCAATGCTTCTGTCCTTGGGCGTCNAGGGTTAAANAAG ] [-] EMBL CB645386 [ ATTGCTGATTTTATCAATCGAAGCAAATCCAAGGTCTACACAATCAATCTTAGCATGGCATATGGTCAGGCTGCAATGCTTCTGTCCCTTGGCGTCAAGGGTAAAAGAGGAGTGCTACCAAATTCAATCACTAAACTGTACCTGCCTAAGGTCCACAAATCTGGTGGAGCTGCTATTGACATGTGGATTAAGGCAAAAGAGTTAGACACGAACACGGATTACTCCCTTGAACTGTTGTCAAAAGGAGTTGGAAAACCAAAGGAAGAGCTCGCAGAGTTTCTCAAAGGTCCAAGGTACTTCCGTGCGCAGGAGGCCATCGATTATGGGCTTGCAGATACAATCTTGCACTCTTTGGATGGTTCCTTCAAACCAAAGGATCTGACCGCGCAGTTGGCCAAAGCACAGGAGATGCGGCAATCGGGGAAGCGCCCAGCAGCTGGAGCTGGGCGATGGTCAACTCCAAGTGTCCCTAGATAGACTAGAACGTCAGATCAAAACCATACACTAGCTTAATATCGACGATGATACGCGTGGTTGTCCTATTCAGAGCAGCCTACCTGTTACATTTGCATGCAAGAAGAAATCCTGTCAGGGTTTGGAATAGATTCAGGCTGACGAAAACGTTGCTTACTGCAGTGGCTTTTGTGTTATTGGGTCATCTATGAATACGATGAGGAGGTAGTTTATGCTGCCTTCCTGCCAAAAAAAATAAAAAGA] consensusID : consensus_15099#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 489 fasta sequence [CCAATCGGGAAGCGCCCACAGCTGGAGCTGGGCGATGGTCAACTCCAAGTGTCCCTAGATAGACTAGAACGTCAGATCAAACCATACACTAGCTTAATATCGACGATGATACGCGTGGTTGTCCTATTCAGACAGCCTACCTGTTACATTTGCATGCAAGAAGAAATCCTGTCAGGGTTTGGAATAGATTCAGGCTGACGAAAACGTTGCTTACTGCAGTGGCTTTTGTGTTATTGGGTCATCTATGAATACGATGAATATGTAGTTTATGCTGCCTTCCTGCCAAGGTTGTTGTATTTTTCAGATAGAATTCAGTAGTGGAGATGGTAATCCAGTAATCCATGTGACCAGTATTCTTCTTATTCATGTGTTGGCTCTGCATGATGCACACCCTGCTTAATCGTGACGGTGAAACCCAGACGAACTCATGCATGCCGTGCGTTTTTTTGTGTTTGACTGTATACATATGGTAGTTGAATCAAATAAAAA] [+] EMBL BI813134 [CCAATCGGGAAGCGCCCACAGCTGGAGCTGGGCGATGGTCAACTCCAAGTGTCCCTAGATAGACTAGAACGTCAGATCAAACCATACACTAGCTTAATATCGACGATGATACGCGTGGTTGTCCTATTCAGACAGCCTACCTGTTACATTTGCATGCAAGAAGAAATCCTGTCAGGGTTTGGAATAGATTCAGGCTGACGAAAACGTTGCTTACTGCAGTGGCTTTTGTGTTATTGGGTCATCTATGAATACGATGAATATGTAGTTTATGCTGCCTTCCTGCCAAGGTTGTTGTATTTTTCAGATAGAATTCAGTAGTGGAGATGGTAATCCAGTAATCCATGTGACCAGTATTCTTCTTATTCATGTGTTGGCTCTGCATGATGCACACCCTGCTTAATCGTGACGGTGAAACCCAGACGAACTCATGCATGCCGTGCGTTTTTTTGTGTTTGACTGTATACATATGGTAGTTGAATCAAATAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15099#0 CACCAATCCTCTTCTTCCTCTCCGGCCGCCTCCTTCCTCACCATGGCGCTCGCGCTGCGC 60 consensus_15099#1 -----------------------------------------------------GGGGAAT 7 consensus_15099#2 ------------------------------------------------------------ consensus_15099#0 TGCCCCGCCGCTGCCTCGCCGTCGCCA-GCCAAGAGCACCTTCCCGCCCTCCTCCTCCCC 119 consensus_15099#1 AAGCTTGGGGCCGCTCCAACATCAGAATGCCAAGAGCACCTTCCCGCCCTCCTCCTCCCC 67 consensus_15099#2 ------------------------------------------------------------ consensus_15099#0 GCCGCCGTCGAGGCTCCCGAGGAGGCCGCCCGCCAGCTGCAGGTGCTACTACTACGGCGA 179 consensus_15099#1 GCCGCCGTCGAGGCTCCCGAGGAGGCCGCCCGCCAGCTGCAGGTGCTACTACTACGGCGA 127 consensus_15099#2 ------------------------------------------------------------ consensus_15099#0 CGGCGGTGGCTTCCGCAAGAACTACGACCACATCCCCAAGCAGTTCCGCGAGGAGAACCT 239 consensus_15099#1 CGGCGGTGGCTTCCGCAAGAACTACGACCACATCCCCAAGCAGTTCCGCGAGGAGAACCT 187 consensus_15099#2 ------------------------------------------------------------ consensus_15099#0 CAAAGATGGCCTGATGGATAATTACAAGAATGTTCCTCAATTCCTTTATGGCTTAAGCCC 299 consensus_15099#1 CAAAGATGGCCTGATGGATAATTACAAGAATGTTCCTCAATTCCTTTATGGCTTAAGCCC 247 consensus_15099#2 ------------------------------------------------------------ consensus_15099#0 TGCTCAGATCGAAATGTTTATGAACGATGATAATCCATATGATCGGCAATCACAGAGAGT 359 consensus_15099#1 TGCTCAGATCGAAATGTTTATGAACGATGATAATCCATATGATCGGCAATCACAGAGAGC 307 consensus_15099#2 ------------------------------------------------------------ consensus_15099#0 TACAGAGGAAAGCATTTCTGCTTCTAGGAGCTATGATGAATTTGGCATGTACAACTTGTC 419 consensus_15099#1 TACAGAGGAAAGCATTTCTGCTTCTAGGAGCTATGATGAATTTGGCATGTACAACTTGTC 367 consensus_15099#2 ------------------------------------------------------------ consensus_15099#0 CGGTATGCATGAGGGCCCTGCAGGTTACAGCATGGGTATGGGAATGGGCACCATGAGCAT 479 consensus_15099#1 CGGTATGCATGAGGGCCCTGCAGGTTACAGCATGGGTATGGGAATGGGCACCATGAGCAT 427 consensus_15099#2 ------------------------------------------------------------ consensus_15099#0 GGGCAGGGCAGGGCGAGGATATAGAAGAATGAGAAGTTCAGCTCCAGATCTGCCATCATT 539 consensus_15099#1 GGGCAGGGCAGGGCGAGGATATAGAAGAATGAGAAGTTCAGCTCCAGATCTGCCATCATT 487 consensus_15099#2 ------------------------------------------------------------ consensus_15099#0 GCTATTGGACTCTCGAATTATATTCCTTGGAATGCCTATTGTTCCAGCAGTAACAGAGCT 599 consensus_15099#1 GCTATTGGACTCTCGAATTATATTCCTTGGAATGCCTATTGTTCCAGCAGTAACAGAGCT 547 consensus_15099#2 ------------------------------------------------------------ consensus_15099#0 TATTGCTGCGCAATTTCTGTGGCTAGATTATGATGACCGCACCAAGCCAATTTACTTGTA 659 consensus_15099#1 TATTGCTGCGCAATTTCTGTGGCTAGATTATGATGACCGCACCAAGCCAATTTACTTGTA 607 consensus_15099#2 ------------------------------------------------------------ consensus_15099#0 TATAAACTCCACAGGAACCATGGATGAAAACAATGAGCTGGTTGCATCTGAAACTGATGC 719 consensus_15099#1 TATAAACTCCACAGGAACCATGGATGAAAACAATGAGCTGGTTGCATCTGAAACTGATGC 667 consensus_15099#2 ------------------------------------------------------------ consensus_15099#0 ATTTGCAATTGCTGATTTTATCAATCGAAGCAAATCCAAGGTCTACACAATCAATCTTAG 779 consensus_15099#1 ATTTGCAATTGCTGATTTTATCAATCGAAGCAAATCCAAGGTCTACACAATCAATCTTAG 727 consensus_15099#2 ------------------------------------------------------------ consensus_15099#0 CATGGCATATGGTCAGGCTGCAATGCTTCTGTCCCTTGGCGTCAAGGGTAAAAGAGGAGT 839 consensus_15099#1 CATGGCATATGGTCAGGCTGCAATGCTTCTGTCCTTGGGCGTCNAGGGTTAAANAAGAGT 787 consensus_15099#2 ------------------------------------------------------------ consensus_15099#0 GCTACCAAATTCAATCACTAAACTGTACCTGCCTAAGGTCCACAAATCTGGTGGAGCTGC 899 consensus_15099#1 GCTACCAAATTCAATCACTAAACTGTACCTGCCTAAGGTCCACAAATCTGGTGGAGCTGC 847 consensus_15099#2 ------------------------------------------------------------ consensus_15099#0 TATTGACATGTGGATTAAGGCAAAAGAGTTAGACACGAACACGGATTACTACCTTGAACT 959 consensus_15099#1 TATTGACATGTGGATTAAGGCAAAAGAGTTAGACACGAACACGGATTACTCCCTTGAACT 907 consensus_15099#2 ------------------------------------------------------------ consensus_15099#0 GTTGTCAAAAGGAGTTGGAAAACCAAAGGAAGAGCTCGCAGAGTTTCTCAAAGGTCCAAG 1019 consensus_15099#1 GTTGTCAAAAGGAGTTGGAAAACCAAAGGAAGAGCTCGCAGAGTTTCTCAAAGGTCCAAG 967 consensus_15099#2 ------------------------------------------------------------ consensus_15099#0 GTACTTCCGTGCGCAGGAGGCCATCGATTATGGGCTTGCAGATACAATCTTGCACTCTTT 1079 consensus_15099#1 GTACTTCCGTGCGCAGGAGGCCATCGATTATGGGCTTGCAGATACAATCTTGCACTCTTT 1027 consensus_15099#2 ------------------------------------------------------------ consensus_15099#0 GGATGGTTCCTTCAAACCAAAGGATCTGACCGCGCAGTTGGCCAAAGCACAGGAGATGCG 1139 consensus_15099#1 GGATGGTTCCTTCAAACCAAAGGATCTGACCGCGCAGTTGGCCAAAGCACAGGAGATGCG 1087 consensus_15099#2 ------------------------------------------------------------ consensus_15099#0 GCAATCGGGGAAGCGCCCAGCAGCTGGAGCTGGGCGATGGTCAACTCCAAGTGTCCCTAG 1199 consensus_15099#1 GCAATCGGGGAAGCGCCCAGCAGCTGGAGCTGGGCGATGGTCAACTCCAAGTGTCCCTAG 1147 consensus_15099#2 CCAATCGGG-AAGCGCCCA-CAGCTGGAGCTGGGCGATGGTCAACTCCAAGTGTCCCTAG 58 ******** ********* **************************************** consensus_15099#0 ATAGACTAGAACGTCAGATCAAAACCATACACTAGCTTAATATCGACGATGATACGCGTG 1259 consensus_15099#1 ATAGACTAGAACGTCAGATCAAAACCATACACTAGCTTAATATCGACGATGATACGCGTG 1207 consensus_15099#2 ATAGACTAGAACGTCAGATCAAA-CCATACACTAGCTTAATATCGACGATGATACGCGTG 117 *********************** ************************************ consensus_15099#0 GTTGTCCTATTCAGAGCAGCCTACCTGTTACATTTGCATGCAAGAAGAAATCCTGTCAGG 1319 consensus_15099#1 GTTGTCCTATTCAGAGCAGCCTACCTGTTACATTTGCATGCAAGAAGAAATCCTGTCAGG 1267 consensus_15099#2 GTTGTCCTATTCAGA-CAGCCTACCTGTTACATTTGCATGCAAGAAGAAATCCTGTCAGG 176 *************** ******************************************** consensus_15099#0 GTTTGGAATAGATTCAGGCTGACGAAAACGTTGCTTACTGCAGTGGCTTTTGTGTTATTG 1379 consensus_15099#1 GTTTGGAATAGATTCAGGCTGACGAAAACGTTGCTTACTGCAGTGGCTTTTGTGTTATTG 1327 consensus_15099#2 GTTTGGAATAGATTCAGGCTGACGAAAACGTTGCTTACTGCAGTGGCTTTTGTGTTATTG 236 ************************************************************ consensus_15099#0 GGTCATCTATGAATACGATGAATATGTAGTTTATGCTGCCTTCCTGCCAAGGTTGTTGTA 1439 consensus_15099#1 GGTCATCTATGAATACGATGAGGAGGTAGTTTATGCTGCCTTCCTGCCAAAAAAAATAAA 1387 consensus_15099#2 GGTCATCTATGAATACGATGAATATGTAGTTTATGCTGCCTTCCTGCCAAGGTTGTTGTA 296 ********************* * ************************* * * consensus_15099#0 TTTTTCAGATAGAATTCACTAGTGGAGATGGTAATCCAGTAATCCATGTGACCAAGTATT 1499 consensus_15099#1 AAGA-------------------------------------------------------- 1391 consensus_15099#2 TTTTTCAGATAGAATTCAGTAGTGGAGATGGTAATCCAGTAATCCATGTGACCAGTATTC 356 consensus_15099#0 CTTCTTAAAAAAAAAAAAA----------------------------------------- 1518 consensus_15099#1 ------------------------------------------------------------ consensus_15099#2 TTCTTATTCATGTGTTGGCTCTGCATGATGCACACCCTGCTTAATCGTGACGGTGAAACC 416 consensus_15099#0 ------------------------------------------------------------ consensus_15099#1 ------------------------------------------------------------ consensus_15099#2 CAGACGAACTCATGCATGCCGTGCGTTTTTTTGTGTTTGACTGTATACATATGGTAGTTG 476 consensus_15099#0 ------------- consensus_15099#1 ------------- consensus_15099#2 AATCAAATAAAAA 489 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||