These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15106#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 1614 fasta sequence [TAAAAAAAAAAGTGAGCCGCTTAGCCTCGCCGGCGCCGCCTCTCTCCGGGAAGCGGCGGCGAGAACGCGGAGGAGAGAGAGAGTTCGGGGTTGGCCCGTCGCGTCGCCGGAGCGATGGATCTTCTGAAGAGGGAGCTGGAGAAGAAGCGGAAGGCGGCGACGGCCGACTTCGGCGGGAAGAGCTTCGTGCGGCGGTCGGAGCTGGAGCAGAAGCAGCTCCAGAAGCGGCGCCACGAGGAGCACCGCCAGCTCCTCTCCAAGGCCCCGCCGGCGACCTCCTCCGCCTCCGCCGCGGGCTCCGACCCCAGCAACCCCAACGCCGACCCGGCCCAGTCCTCCGCCGCAAACCCTAACCCTAACTCCTCCTCGTCCGCCGCCGCCGCGTCCGTCCCGCCGGGCCTCGCGGGGAAGAAGACCGCGCAGGATGAGGCGCTCCTCTCCGAGGAGCGCCGGATCGACGAGCTCGACCTCCCGCGGCATGAGGTGGTGCGGCGCCTCCGCATCCTGCGCGAGCCCGTCACGCTGTTCGGGGAGGACGACGCCGACCGGCTCGCCCGCCTCAAGTTCGTGCTCAAGTCCGGCGTGATTGACGACATCGACGACCTTGACATGACAGAGGGGCAGACGAACGACTTCCTCCGTGACATGGTCGAGCTCCGCAAGCGGCAGAGGGCTGGCCGGGACACCTATGTCAAGGGCAAGGGCAAACGAGCGGGCGGCGGTGATGGCGGCGAGGGTGGCGCTGGCGGGGATAATGCTGATGATGGGGATGGGGACGGCCGGAGGAGTGGGGATGATGCTGATGCGGACAAGGACTCGAAACGGATGAAGACCAAGTTTGAGGAGCTGTGTGATGAGGACAAGATCTTGGTGTTCTTCAAGAAGCTACTCATTGAGTGGAACCAGGAGCTTGATGAGATGCCGGAGCTGGAGAAGAG-GAC-AG-CAAAGGGCAAGTCGATGGTCGCAACCTTCAAGCAATGTGCGCGGTATCTCAGCCCCCTGTTTGAGTTTTGCAGGAAGCAGGTTCTTCCTGATGACATCCGTCAAGCATTGC-TCGTTATTGTTGAATGCTGCATGAAGCGTGATTATTTAGCAGCAATGGACCAATACATCAAGCTGGCCATTGGCAATGCACCATGGCCTATTGGTGTCACTATGGTTGGTATCCACGAGCGTTCGGCCCGAG-AAAAGAT-CTACACA-AACAGTGTGGCGCACATTATGAACGATGAGACCACTCGCAAGTACCTTCAGTCAATCAAGAGGCTTATGACCCTTTGCCAGCGACGTTATCCTGCTCTGCCCTCAAAATCGGTGGAGTTCAACAGCCTGGCAAATGGGAGTGACCTGCAGGCCCTTTTGTCAGAGGAGAAAGATCCAGGAAACCCTCCTAGCGAGGATAGGCTTCGACTCATGCCAGCGTCAAAAGAGTGATGCTTCAAC---GCACAAGCTTGGATCACAAATAGAATATTTGTAATCTGTGTAATGTGTAAACCAAATTTTCCTGCTCTTATTTTCATTTTTGTACTCTTGCAAGAATCTGAGAATATTGCCTGCTAATCAAATTACTGAAGAAAGCAATATACTGTCTGCTTCTCTCCTAAAAAAAAAAAAAAA] [+] EMBL AK101604 [TAAAAAAAAAAGTGAGCCGCTTAGCCTCGCCGGCGCCGCCTCTCTCCGGGAAGCGGCGGCGAGAACGCGGAGGAGAGAGAGAGTTCGGGGTTGGCCCGTCGCGTCGCCGGAGCGATGGATCTTCTGAAGAGGGAGCTGGAGAAGAAGCGGAAGGCGGCGACGGCCGACTTCGGCGGGAAGAGCTTCGTGCGGCGGTCGGAGCTGGAGCAGAAGCAGCTCCAGAAGCGGCGCCACGAGGAGCACCGCCAGCTCCTCTCCAAGGCCCCGCCGGCGACCTCCTCCGCCTCCGCCGCGGGCTCCGACCCCAGCAACCCCAACGCCGACCCGGCCCAGTCCTCCGCCGCAAACCCTAACCCTAACTCCTCCTCGTCCGCCGCCGCCGCGTCCGTCCCGCCGGGCCTCGCGGGGAAGAAGACCGCGCAGGATGAGGCGCTCCTCTCCGAGGAGCGCCGGATCGACGAGCTCGACCTCCCGCGGCATGAGGTGGTGCGGCGCCTCCGCATCCTGCGCGAGCCCGTCACGCTGTTCGGGGAGGACGACGCCGACCGGCTCGCCCGCCTCAAGTTCGTGCTCAAGTCCGGCGTGATTGACGACATCGACGACCTTGACATGACAGAGGGGCAGACGAACGACTTCCTCCGTGACATGGTCGAGCTCCGCAAGCGGCAGAGGGCTGGCCGGGACACCTATGTCAAGGGCAAGGGCAAACGAGCGGGCGGCGGTGATGGCGGCGAGGGTGGCGCTGGCGGGGATAATGCTGATGATGGGGATGGGGACGGCCGGAGGAGTGGGGATGATGCTGATGCGGACAAGGACTCGAAACGGATGAAGACCAAGTTTGAGGAGCTGTGTGATGAGGACAAGATCTTGGTGTTCTTCAAGAAGCTACTCATTGAGTGGAACCAGGAGCTTGATGAGATGCCGGAGCTGGAGAAGAG GAC AG CAAAGGGCAAGTCGATGGTCGCAACCTTCAAGCAATGTGCGCGGTATCTCAGCCCCCTGTTTGAGTTTTGCAGGAAGCAGGTTCTTCCTGATGACATCCGTCAAGCATTGC TCGTTATTGTTGAATGCTGCATGAAGCGTGATTATTTAGCAGCAATGGACCAATACATCAAGCTGGCCATTGGCAATGCACCATGGCCTATTGGTGTCACTATGGTTGGTATCCACGAGCGTTCGGCCCGAG AAAAGAT CTACACA AACAGTGTGGCGCACATTATGAACGATGAGACCACTCGCAAGTACCTTCAGTCAATCAAGAGGCTTATGACCCTTTGCCAGCGACGTTATCCTGCTCTGCCCTCAAAATCGGTGGAGTTCAACAGCCTGGCAAATGGGAGTGACCTGCAGGCCCTTTTGTCAGAGGAGAAAGATCCAGGAAACCCTCCTAGCGAGGATAGGCTTCGACTCATGCCAGCGTCAAAAGAGTGATGCTTCAAC GCACAAGCTTGGATCACAAATAGAATATTTGTAATCTGTGTAATGTGTAAACCAAATTTTCCTGCTCTTATTTTCATTTTTGTACTCTTGCAAGAATCTGAGAATATTGCCTGCTAATCAAATTACTGAAGAAAGCAATATACTGTCTG ] [+] EMBL CB643745 [ AAAAAAAGTGAGCCGCTTAGCCTCGCCGGCGCCGCCTCTCTCCGGGAAGCGGCGGCGAGAACGCGGAGGAGAGAGAGAGTTCGGGGTTGGCCCGTCGCGTCGCCGGAGCGATGGATCTTCTGAAGAGGGAGCTGGAGAAGAAGCGGAAGGCGGCGACGGCCGACTTCGGCGGGAAGAGCTTCGTGCGGCGGTCGGAGCTGGAGCAGAAGCAGCTCCAGAAGCGGCGCCACGAGGAGCACCGCCAGCTCCTCTCCAAGGCCCCGCCGGCGACCTCCTCCGCCTCCGCCGCGGGCTCCGACCCCAGCAACCCCAACGCCGACCCGGCCCAGTCCTCCGCCGCAAACCCTAACCCTAACTCCTCCTCGTCCGCCGCCGCCGCGTCCGTCCCGCCGGGCCTCGCGGGGAAGAAGACCGCGCAGGATGAGGCGCTCCTCTCCGAGGAGCGCCGGATCGACGAGCTCGACCTCCCGCGGCATGAGGTGGTGCGGCGCCTCCGCATCCTGCGCGAGCCCGTCACGCTGTTCGGGGAGGACGACGCCGACCGGCTCGCCCGCCTCAAGTTCGTGCTCAAGTCCGGCGTGATTGACGACATCGACGACCTTGACATGACAGAGGGGCAGACGAACGACTTCCTCCGTGACATGGTCGAGCTCCGCAAGCGGCAGAGGGCTGGCCGGGACACCTATGTCAAGGGCAAGGGCAAACGAGCGGGCGGCGGTGATGGCGGCTAGGGTGGCGCTGGCGGGGATAATG ] [+] EMBL AU093673 [ AGTGAGCCGCTTAGCCTCGCCGGCGCCGCCTCTCTCCGGGAAGCGGCGGCGAGAACGCGGAGGAGAGAGAGAGTTCGGGGTTGGCCCGTCGCGTCGCCGGAGCGATGGATCTTCTGAAGAGGGAGCTGGAGAAGAAGCGGAAGGCGGCGACGGCCGACTTCGGCGGGAAGAGCTTCGTGCGGCGGTCGGAGCTGGAGCANAAGCAGCTCCAGAAGCGGCGCCACGAGGAGCACCGCCAGCTCCTCTCCAAGGCCCCGCCGGCGACCTCCTCCGCCTCCGCCGCGGGCTCCGACCCCAGCAACnc ] [+] EMBL AU095040 [ GCGGTCGGAGCTGGAGCAGAAGCAGCTCCAGAAGCGGCGCCACGAGGAGCACCGCCAGCTCCTCTCCAAGGCCCCGTCGGCGACCTCCTCCGCCTCCGCCGCGGGCTCCGACCCCAGCAACCCCAACGCCGACCCGGCCCAGTCCTCCGCCGCAAACCCTAACCCTAACTCCTCCTCGTCCGCCGCCGCCGCGTCCGTCCCGCCGGGCCTCGCGGGGAAGAAGACCGCGCAGGATGAGGCGCTCC ] [+] EMBL CB667105 [ GGTGGTGCGGCGCCTCCGCATCCTGCGCGAGCCCGTCACGCTGTTCGGGGAGGACGACGCCGACCGGCTCGCCCGCCTCAAGTTCGTGCTCAAGTCCGGCGTGATTGACGACATCGACGACCTTGACATGACAGAGGGGCAGACGAACGACTTCCTCCGTGACATGGTCGAGCTCCGCAAGCGGCAGAGGGCTGGCCGGGACACCTATGTCAAGGGCAAGGGCAAACGAGCGGGCGGCGGTGATGGCGGCGAGGGTGGCGCTGGCGGGGATAATGCTGATGATGGGGATGGGGACGGCCGGAGGAGTGGGGATGATGCTGATGCGGACAAGGACTCGAAACGGATGAAGACCAAGTTTGAGGAGCTGTGTGATGAGGACAAGATCTTGGTGTTCTTCAAGAAGCTACTCATTGAGTGGAACCAGGAGCTTGATGAGATGCCGGAGCTGGAGAAGAG GAC AG CAAAGGGCAAGTCGATGGTCGCAACCTTCAAGCAATGTGCGCGGTATCTCAGCCCCCTGTTTGAGTTTTGCAGGAAGCAGGTTCTTCCTGATGACATCCGTCAAGCATTGC TCGTTATTGTTGAATGCTGCATGAAGCGTGATTATTTAGCAGCAATGGACCAATACATCAAGCTGGCCATTGGCAATGCACCATGGCCTATTGGTGTCACTATGGTTGGTATCCACGAGCGTTCGGCCCGAG AAAAGAT CTACACA AACAGTGTGGCGCACATTATGAACGATGAGACCACTCGCAAGTACCTTCAGTCAATCAAGAGGCTTATGACCCTTTGCCAGCGACGTTA ] [-] EMBL CB667106 [ ATGATGCTGATGCGGACAAGGACTCGAAACGGATGAAGACCAAGTTTGAGGAGCTGTGTGATGAGGACAAGATCTTGGTGTTCTTCAAGAAGCTACTCATTGAGTGGAACCAGGAGCTTGATGAGATGCCGGAGCTGGAGAAGAG GAC AG CAAAGGGCAAGTCGATGGTCGCAACCTTCAAGCAATGTGCGCGGTATTTCAGCCCCCTGTTTGAGTTTTGCAGGAAGCAGGTTTTTCCTGATGACATCCGTCAAGCATTGC TCGTTATTGTTGAATGCTGCATGAAGCGTGATTATTTAGCAGCAATGGACCAATACATCAAGCTGGCCATTGGCAATGCACCATGGCCTATTGGTGTCACTATGGTTGGTATCCACGAGCGTTCGGCCCGAG AAAAGAT TTACACA AACAGTGTGGCGCCCATTATGAACGATGAGACCCCTCGCAAGTACCTTCAGTCAATCAAGAGGCTTATGACCCTTTGCCAGCGACGTTATCCTGCTTTGCCCTCAAAATCGGTGGAGTTCAACAGCCTGGCAAATGGGAGTGACCTGCAGGCCCTTTTGTCAGAGGAGAAAGATCCAGGAAACCCTCCTAGCGAGGATAGGCTTTGACTCATGCCAGCGTCAAAAGAGTGATGCTTCAAC GCACAAGCTTGGATCACAAATAGAATATTTGTAATCTGTGTAATGTGTAAACCAAATTTTCCTGCTCTTATTTTCATTTTTGTACTCTTGCAAGAATTTGAGAATATTGCCTGCTAATCAAA ] [+] EMBL CF305765 [ ACGGATGAAGACCAAGTTTGAGGAGCTGTGTGATGAGGACAAGATCTTGGTGTTCTTCAAGAAGCTACTCATTGAGTGGAACCAGGAGCTTGATGAGATGCCGGAGCTGGAGAAGAG GAC AG CAAAGGGCAAGTCTTTTGTCGCAACCTTCAAGCAATGTGCGCGGTATCTCAGCCCCCTGTTTGAGTTTTGCAGGAAGCAGGTTCTTCCTGATGACATCCGTCAAGCATTGC TCGTTATTGTTGAATGCTGCATGAAGCGTGATTATTTAGCAGCAATGGACCAATACATCAAGCTGGCCATTGGCAATGCACCATGGCCTATTGGTGTCACTATGGTTGGTATCCACGAGCGTTCGGCCCGAG AAAAGAT CTACACA AACAGTGTGGCGCACATTATGAACGATGAGACCACTCGCAAGTACCTTCAGTCAATCAAGAGGCTTATGACCCTTTGCCAGCGACGTTATCCTGCTCTG ] [-] EMBL CA763630 [ tgattaggtGAGCGACGAGACAAAGGGCAAGTCGATGGTCGCAACCTTCAAGCAATGTGCGCGGTATCTCAGCCCCCTGTNTGAGTTTTGCAGGAAGCAGGTTCTTCCTGATGACATCCGTCAAGCATTGC TCGTTATTGTTGAATGCTGCATGAAGCGTGATTATTTAGCAGCAATGGACCAATACATCAAGCTGGCCATTGGCAATGCACCATGGCCTATTGGTGTCACTATGGTTGGTATCCACGAGCGTTCGGCCCGAG AAAAGAT CTACACA AACAGTGTGGCGCACATTATGAACGATGAGACCACTCGCAAGTACCTTCAGTCAATCAAGAGGCTTATGACCCTTTGCCAGCGACGTTATCCTGCTCTGCCCTCAAAATCGGTGGAGTTCAACAGCCTGGCAAATGGGAGTGACCTGCAGGCCCTTTTGTCAGAGGAGAAAGATCCAGGAAACCCTCCTAGCGAGGATAGGCTTCGACTCATGCCAGCGTCAAAAGAGTGATGCTTCAAC GCACAAGCTTGGATCACAAATAGAATATTTGTAATCTGTGTAATGTGTAAACCAAATTTTCCTGCTCTTATTTTCATTTTTGTACTCTTGCAAGAATCTGAGAATATTGCCTGCTAATCAAATTACTGAAGAAAGCAATATACTGTCTGCTTCTCTCCTAAAAAAAAAAAAAAA] [+] EMBL AU093714 [ GAC AG CAAAGGGCAAGTCGATGGTCGCAACCTTCAAGCAATGTGCGCGGTATCTCAGCCCCCTGTTTGAGTTTTGCAGGAAGCAGGTNCTTCCTGATGACATCCGTCAAGNATTGCNCCGTAATTGTTNAATnntn ] [+] EMBL CA767257 [ GGCCGCAACCTTCAAGCAATGTGCGCGGTATCTCAGCCCCCTGTTTGAGTTTTGCAGGAAGCAGGTTCTTCCTGATGACATCCGTCAAGCATTGC TCGTTATTGTTGAATGCTGCATGAAGCGTGATTATTTAGCAGCAATGGACCAATACATCAAGCTGGCCATTGGCAATGCACCATGGCCTATTGGTGTCACTATGGTTGGTATCCACGAGCGTTCGGCCCGAG AAAAGGT CTACACA AACAGTGTGGCGCACATTATGAACGATGAGACCACTCGCAAGTACCTTCAGTCAATCAAGAGGCTTATGACCCTTTGCCAGCGACGTTATCCTGCTCTGCCCTCAAAATCGGTGGAGTTCAACAGCCTGGCAAATGGGAGTGACCTGCAGGCCCTTTTGTCAGAGGAGAAAGATCCAGGAAACCCTCCTAGCGAGGATAGGCTTCGACTCATGCCAGCGTCAAAAGAGTGATGCTTCAAC GCACAAGCTTGGATCACAAATAGAATATTTGTAATCTGTGTAATGTGTAAACCAAATTTTCCTGCTCTTATTTTCATTTTTGTACTCTTGCAAGAATCTGAGAATATTGCCTGCTAATCAAATTACTGAA ] [+] EMBL BI808350 [ GGCCACTTGCAATGCACC TGGCCTATTGGTGTCACTATGGTTGGTATCCACGAGCGTTCGGCCCGAG AAAAGAT CTACACC TACCGTGTGGCGCACATTATGAACGATGAGACCACTCGCAAGTACCTTCAGTCCATCAAGAGGCTTATGACCCTTTGCCAGCGACGTTATCCTGCTCTGCCCTC AAATCGGTGGAGTTCAACAGCCTGGCAAATGGGAGTGACCTGCAGGCCCTTTTGTCAGAGGAGAAAGATCCAGGAAACCCTCCTAGCGAGGATAGGCTTCGACTCATGCCAGCGTCAAAAGAGTGATGCTTCAAC GCACAAGCTTGGATCAC AATAGAATATTTGTAATCTGTGTAATGTGTAAACC AATTTTCCTGCTCTTATTTTCATTTTTGTACTCTTGCAAGAACCTGAGAATATTGCCTGCTAATCAAATTACTGAAGAAAGC ATATACTGTCTGCTTCTCTCCTAAAAA ] [+] EMBL BI809353 [ TGGTGTCACTATGGTT GTATCCACGAGCGTTCGGCCCGAGTAAAAGATGCTACACACAACAGTGTGGCGCACATTATGAACGATGAGACCACTCGCAAGTACCTTCAGTCAATCAAGAGGCTTATGACCCTTTGCCAGCGACGTTATCCTGCTCTGCCCTCGAAATCGGTGGAGTTCAACAGCCTGGCAAATGGGAGTGACCTGCAGGCCCTTTTGTCAGAGGAGAAAGATCCAGGAAACCCTCCTAGCGAGGATAGGCTTCGACTCATGCCAGCGTCCAAAGAGTGATGCTTCAACCGGGCACAAGCTTGGATCCCCAATAGAATATTTGTAATCTGTGTAATGTGTAAACCCAATTTTCCTGCTCTTATTTTCATTTTGGTACTCTTGCCAGAACCTGAGAATAT ] [+] EMBL BI808764 [ GAGCGTTCGGCCCGAG AAAAGAT CTACAC AACAGTGTGGCGCACATTATGAACGATGAGACCACTCGCAAGTACCTTCAGTCAATCAAGAGGCTTATGACCCTTTGCCAGCGACGTTATCCTGCTCTGCCCTCAAAATCGGTGGAGTTCAACAGCCTGGCAAATGGGAGTGACCTGCAGGCCCTTTTGTCAGAGGAGAAAGATCCAGGAAACCCTCCTAGCGAGGATAGGCTTCGACTCATGCCAGCGTC AAAGAGTGATGCTTCAAC GCACAAGCTTGGATCACAAATAGAATATTTGTAATCTGTGTAATGTGTAAACC AATTTTCCTGCTCTTATTTTCATTTTTGTACTCTTGCAAGAACCTGAGAATATTGCCTGCTAATCAAATTACTGAAGAAAGCAATATACTGTCTGCTTCTCTCCTAAAAAAAAAA ] [+] EMBL BI798461 [ GCCCGAG AAAAGAT CTACACA AACAGTGTGGCGCACATTATGAACGATGAGACCACTCGCAAGTACCTTCAGTCAATCAAGAGGCTTATGACCCTTTGCCAGCGACGTTATCCTGCTCTGCCCTCAAAATCGGTGGAGTTCAACAGCCTGGCAAATGGGAGTGACCTGCAGGCCCTTTTGTCAGAGGAGAAAGATCCAGGAAACCCTCCTAGCGAGGATAGGCTTCGACTCATGCCAGCGTCAAAAGAGTGATGCTTCAAC GCACAAGCTTGGATCAC AATAGAATATTTGTAATCTGTGTAATGTGTAAACC AATTTTCCTGCTCTTATTTTCATTTTTGTACTCTTGCAAGAATCTGAGAATATTCCCTGCTAATCAAATTACTGAAGAAAGCAAaaaa ] [+] EMBL BI799326 [ GCCCGAG AAAAGAT CTACACA AACAGTGTGGCGCACATTATGAACGATGAGACCACTCGCAAGTACCTTCAGTCAATCAAGAGGCTTATGACCCTTTGCCAGCGACGTTATCCTGCTCTGCCCTCAAAATCGGTGGAGTTCAACAGCCTGGCAAATGGGAGTGACCTGCAGGCCCTTTTGTCAGAGGAGAAAGATCCAGGAAACCCTCCTAGCGAGGATAGGCTTCGACTCATGCCAGCGTCAAAAGAGTGATGCTTCAAC GCAC AGCTTGGATCACCAATAGAATATTTGTAATCTGTGTAATGTGTAAACC AATTTTCCTGCTCTTATTTTCATTTTTGTACTCTTGC AGAATCTGAGAATATTGCCTGCTAATC AATTACTGAAGAAAGCAAaaaa ] [+] EMBL AU093674 [ CCTTCAGTCAATCAAGAGGCTTATGACCCNTTGCCAGCGACGTTATCCTGCTCTGCCCTCAAAATCGGTGGAGTTCAACAGCCTGGCAAATGGGAGTGACCTGNAGGCCCTTTTGTCAGAGGAGAAAGATCCAGGAAACCCTCCTAGCGAGGATAGGCTTCGACTCATGCCAGCGTCAAAAGAGTGATGCTTCAAC GCACAAGCTTGGATCACAAATAGAATATTTGTAATCTGTGTAATGTGTAAACCAAATTTTCCTGCTCTTATTTTCATTTTTGTACTCTTGCAAGAATCTGAGAATATTGCCTGCTAATCAAATTACTGAAGAAAGCAATAaaaaa ] [+] EMBL AU093715 [ TGCCAGCGACGTTATCCTGCTNTGCCCTCAAAATCGGTGGAGTTCAACAGCCTGGCAAATGGNAGTGACCTGCAGGCCCTTTTGTCAGAGGAGAAANATCCAGGAAACCCTCCTAGCGAGGATAGGCTTCGACTCATGCCAGCGTCAAAAGAGTGATGCTTCAAC GCACAAGCTTGGATCACAAATAGAATATTTGTAATCTGTGTAATGTGTAAACCAAATTTTCCTGCTCTTATTTTCATTTTTGTACTCTTGCAAGAATCTGAGAATATTGCCTGCTAATCAAATTACTGAAGAAAGCAATATACTGTCTGCTTCTCTCCTAAAAA ] consensusID : consensus_15106#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 588 fasta sequence [GACATCCGTCAAGCATTGCTCGTTATTGTTGAATGCTGCNTGAAGCGTGATTATTTAGCAGCNNTGGACCANTNCNTTCAAGCTGGCCATTGGCAATGCACCATGNCCTATTTGGTGGNCACTATGGTTGGTNTCCTCGAGCGTTTCGGCCCGAGAAAAAGATNTACACAANACAGTNTGGCGCACATTTTGAACGATTGAGNCCNCTCGCAAGTNCCTTCAGTCAATCAAGNGGCTTTTGNCCCTTTGCCAGCGNCGTTATCCTGCTCTGCCCTCAAAATCGGTGGAGTTCAACAGCCTGGCAAATGGGAGTGNCCTGCAGGCCCTTTTNTCAGNGGNGAAAGATCCNGGAANCCCTCCTNGCGNGGATAGGCTTCGACTCATGCCAGCGTCAAAAGAGTGATGCTTCAACGCACAAGCTTGGATCNCAAATAGAATATTTGTAATCTGTGTAATGTGTAAACCAAATTTTCCTGCTCTTATTTTCATTTTTGTACTCTTGCAAGAATTTGAGAATATTGCCTGCTNATCAAATTNCTGNNGNANGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU030257 [GACATCCGTCAAGCATTGCTCGTTATTGTTGAATGCTGCNTGAAGCGTGATTATTTAGCAGCNNTGGACCANTNCNTTCAAGCTGGCCATTGGCAATGCACCATGNCCTATTTGGTGGNCACTATGGTTGGTNTCCTCGAGCGTTTCGGCCCGAGAAAAAGATNTACACAANACAGTNTGGCGCACATTTTGAACGATTGAGNCCNCTCGCAAGTNCCTTCAGTCAATCAAGNGGCTTTTGNCCCTTTGCCAGCGNCGTTATCCTGCTCTGCCCTCAAAATCGGTGGAGTTCAACAGCCTGGCAAATGGGAGTGNCCTGCAGGCCCTTTTNTCAGNGGNGAAAGATCCNGGAANCCCTCCTNGCGNGGATAGGCTTCGACTCATGCCAGCGTCAAAAGAGTGATGCTTCAACGCACAAGCTTGGATCNCAAATAGAATATTTGTAATCTGTGTAATGTGTAAACCAAATTTTCCTGCTCTTATTTTCATTTTTGTACTCTTGCAAGAATTTGAGAATATTGCCTGCTNATCAAATTNCTGNNGNANGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_15106#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 547 fasta sequence [CAAGCATTGCTCGTTATTGTTGAATGCTGCATGAAGCGTGATTATTTAGCAGCAATGGACCAATACATCAAGCTGGCCATTGGCAATGCACCATGCCCTATTGGTGTCACTATGGTTGGTATCCACGAGCGTTCGGCCCGAGAAAAGATCTACACAAACAGTGTGGCGCACATTATGAACGATGAGACCACTCGCAAGTACCTTCAGTCAATCAAGAGGCTTATGACCCTTTGCCAGCGACGTTATCCTGCTCTGCCCTCAAAATCGGTGGAGTTCAACAGCCTGGCAAATGGGAGTGACCTGCAGGCCCTTTTGTCAGAGGAGAAAGATCCAGGAAACCCTCCTAGCGAGGATAGGCTTGGACTCATGCCAGCGTCAAAAGAGTGATGCTTCAACGCCCAAGCTTGGATCACAAATAGAATATTTGTAATCTGTGTAATGTGTAAACCAAATTTTCCTGCTCTTATTTTCATTTTTGTACTCTTGCAAGAATCTGAGAATATTGCCGGCTAATCAAATTACTGAAGAAAGCAAAAAAAAAAAAAAA] [-] EMBL CB643746 [CAAGCATTGCTCGTTATTGTTGAATGCTGCATGAAGCGTGATTATTTAGCAGCAATGGACCAATACATCAAGCTGGCCATTGGCAATGCACCATGCCCTATTGGTGTCACTATGGTTGGTATCCACGAGCGTTCGGCCCGAGAAAAGATCTACACAAACAGTGTGGCGCACATTATGAACGATGAGACCACTCGCAAGTACCTTCAGTCAATCAAGAGGCTTATGACCCTTTGCCAGCGACGTTATCCTGCTCTGCCCTCAAAATCGGTGGAGTTCAACAGCCTGGCAAATGGGAGTGACCTGCAGGCCCTTTTGTCAGAGGAGAAAGATCCAGGAAACCCTCCTAGCGAGGATAGGCTTGGACTCATGCCAGCGTCAAAAGAGTGATGCTTCAACGCCCAAGCTTGGATCACAAATAGAATATTTGTAATCTGTGTAATGTGTAAACCAAATTTTCCTGCTCTTATTTTCATTTTTGTACTCTTGCAAGAATCTGAGAATATTGCCGGCTAATCAAATTACTGAAGAAAGCAAAAAAAAAAAAAAA] consensusID : consensus_15106#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 445 fasta sequence [AAGAGGCTTATGACCCTTTGCCACGACGTTATCCTGCTCTGCCCTCAAAATCGGTGGAGTTCAACAGCCTGGCAAATGGGAGTGACCTGCAGGCCCTTTTGTCAGAGGAGAAAGATCCAGGAAACCCTCCTAGCGAGGATAGGCTTCGACTCATGCCAGCGTCCAAAGAGTGGATGCTTCAACGCACACAGCTTGGATCNCCAATAGAATATGTTGTAATCTGTGGTAATGTGTAAACCCAATGTGTTGCCTGCTGCTGTATTGTTGCATGTTGTTGGTGACTCCTTGGCACAGAACCTGAGAATATTGCCTGGCTAATCCAAATTACTGAAGAAACGCCATATACTGTCTGCTTCTCTCCTAGAAGAGTTCACTGGCTAAGGTTCCATGTGTAAGTTTGGTTGAATAAAACCCTTCTAATGTCTTTGCTGTGCCAAAAAAAAAA] [+] EMBL BM421837 [AAGAGGCTTATGACCCTTTGCCACGACGTTATCCTGCTCTGCCCTCAAAATCGGTGGAGTTCAACAGCCTGGCAAATGGGAGTGACCTGCAGGCCCTTTTGTCAGAGGAGAAAGATCCAGGAAACCCTCCTAGCGAGGATAGGCTTCGACTCATGCCAGCGTCCAAAGAGTGGATGCTTCAACGCACACAGCTTGGATCNCCAATAGAATATGTTGTAATCTGTGGTAATGTGTAAACCCAATGTGTTGCCTGCTGCTGTATTGTTGCATGTTGTTGGTGACTCCTTGGCACAGAACCTGAGAATATTGCCTGGCTAATCCAAATTACTGAAGAAACGCCATATACTGTCTGCTTCTCTCCTAGAAGAGTTCACTGGCTAAGGTTCCATGTGTAAGTTTGGTTGAATAAAACCCTTCTAATGTCTTTGCTGTGCCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15106#1 ------------------------------------------------------------ consensus_15106#2 ------------------------------------------------------------ consensus_15106#0 TAAAAAAAAAAGTGAGCCGCTTAGCCTCGCCGGCGCCGCCTCTCTCCGGGAAGCGGCGGC 60 consensus_15106#3 ------------------------------------------------------------ consensus_15106#1 ------------------------------------------------------------ consensus_15106#2 ------------------------------------------------------------ consensus_15106#0 GAGAACGCGGAGGAGAGAGAGAGTTCGGGGTTGGCCCGTCGCGTCGCCGGAGCGATGGAT 120 consensus_15106#3 ------------------------------------------------------------ consensus_15106#1 ------------------------------------------------------------ consensus_15106#2 ------------------------------------------------------------ consensus_15106#0 CTTCTGAAGAGGGAGCTGGAGAAGAAGCGGAAGGCGGCGACGGCCGACTTCGGCGGGAAG 180 consensus_15106#3 ------------------------------------------------------------ consensus_15106#1 ------------------------------------------------------------ consensus_15106#2 ------------------------------------------------------------ consensus_15106#0 AGCTTCGTGCGGCGGTCGGAGCTGGAGCAGAAGCAGCTCCAGAAGCGGCGCCACGAGGAG 240 consensus_15106#3 ------------------------------------------------------------ consensus_15106#1 ------------------------------------------------------------ consensus_15106#2 ------------------------------------------------------------ consensus_15106#0 CACCGCCAGCTCCTCTCCAAGGCCCCGCCGGCGACCTCCTCCGCCTCCGCCGCGGGCTCC 300 consensus_15106#3 ------------------------------------------------------------ consensus_15106#1 ------------------------------------------------------------ consensus_15106#2 ------------------------------------------------------------ consensus_15106#0 GACCCCAGCAACCCCAACGCCGACCCGGCCCAGTCCTCCGCCGCAAACCCTAACCCTAAC 360 consensus_15106#3 ------------------------------------------------------------ consensus_15106#1 ------------------------------------------------------------ consensus_15106#2 ------------------------------------------------------------ consensus_15106#0 TCCTCCTCGTCCGCCGCCGCCGCGTCCGTCCCGCCGGGCCTCGCGGGGAAGAAGACCGCG 420 consensus_15106#3 ------------------------------------------------------------ consensus_15106#1 ------------------------------------------------------------ consensus_15106#2 ------------------------------------------------------------ consensus_15106#0 CAGGATGAGGCGCTCCTCTCCGAGGAGCGCCGGATCGACGAGCTCGACCTCCCGCGGCAT 480 consensus_15106#3 ------------------------------------------------------------ consensus_15106#1 ------------------------------------------------------------ consensus_15106#2 ------------------------------------------------------------ consensus_15106#0 GAGGTGGTGCGGCGCCTCCGCATCCTGCGCGAGCCCGTCACGCTGTTCGGGGAGGACGAC 540 consensus_15106#3 ------------------------------------------------------------ consensus_15106#1 ------------------------------------------------------------ consensus_15106#2 ------------------------------------------------------------ consensus_15106#0 GCCGACCGGCTCGCCCGCCTCAAGTTCGTGCTCAAGTCCGGCGTGATTGACGACATCGAC 600 consensus_15106#3 ------------------------------------------------------------ consensus_15106#1 ------------------------------------------------------------ consensus_15106#2 ------------------------------------------------------------ consensus_15106#0 GACCTTGACATGACAGAGGGGCAGACGAACGACTTCCTCCGTGACATGGTCGAGCTCCGC 660 consensus_15106#3 ------------------------------------------------------------ consensus_15106#1 ------------------------------------------------------------ consensus_15106#2 ------------------------------------------------------------ consensus_15106#0 AAGCGGCAGAGGGCTGGCCGGGACACCTATGTCAAGGGCAAGGGCAAACGAGCGGGCGGC 720 consensus_15106#3 ------------------------------------------------------------ consensus_15106#1 ------------------------------------------------------------ consensus_15106#2 ------------------------------------------------------------ consensus_15106#0 GGTGATGGCGGCGAGGGTGGCGCTGGCGGGGATAATGCTGATGATGGGGATGGGGACGGC 780 consensus_15106#3 ------------------------------------------------------------ consensus_15106#1 ------------------------------------------------------------ consensus_15106#2 ------------------------------------------------------------ consensus_15106#0 CGGAGGAGTGGGGATGATGCTGATGCGGACAAGGACTCGAAACGGATGAAGACCAAGTTT 840 consensus_15106#3 ------------------------------------------------------------ consensus_15106#1 ------------------------------------------------------------ consensus_15106#2 ------------------------------------------------------------ consensus_15106#0 GAGGAGCTGTGTGATGAGGACAAGATCTTGGTGTTCTTCAAGAAGCTACTCATTGAGTGG 900 consensus_15106#3 ------------------------------------------------------------ consensus_15106#1 ------------------------------------------------------------ consensus_15106#2 ------------------------------------------------------------ consensus_15106#0 AACCAGGAGCTTGATGAGATGCCGGAGCTGGAGAAGAGGACAGCAAAGGGCAAGTCGATG 960 consensus_15106#3 ------------------------------------------------------------ consensus_15106#1 ------------------------------------------------------------ consensus_15106#2 ------------------------------------------------------------ consensus_15106#0 GTCGCAACCTTCAAGCAATGTGCGCGGTATCTCAGCCCCCTGTTTGAGTTTTGCAGGAAG 1020 consensus_15106#3 ------------------------------------------------------------ consensus_15106#1 ---------------GACATCCGTCAAGCATTGCTCGTTATTGTTGAATGCTGCNTGAAG 45 consensus_15106#2 ------------------------CAAGCATTGCTCGTTATTGTTGAATGCTGCATGAAG 36 consensus_15106#0 CAGGTTCTTCCTGATGACATCCGTCAAGCATTGCTCGTTATTGTTGAATGCTGCATGAAG 1080 consensus_15106#3 ------------------------------------------------------------ consensus_15106#1 CGTGATTATTTAGCAGCNNTGGACCANTNCNTTCAAGCTGGCCATTGGCAATGCACCATG 105 consensus_15106#2 CGTGATTATTTAGCAGCAATGGACCAATACAT-CAAGCTGGCCATTGGCAATGCACCATG 95 consensus_15106#0 CGTGATTATTTAGCAGCAATGGACCAATACAT-CAAGCTGGCCATTGGCAATGCACCATG 1139 consensus_15106#3 ------------------------------------------------------------ consensus_15106#1 NCCTATTTGGTGGNCACTATGGTTGGTNTCCTCGAGCGTTTCGGCCCGAGAAAAAGATNT 165 consensus_15106#2 CCCTATT-GGTG-TCACTATGGTTGGTATCCACGAGCGTT-CGGCCCGAGAAAA-GATCT 151 consensus_15106#0 GCCTATT-GGTG-TCACTATGGTTGGTATCCACGAGCGTT-CGGCCCGAGAAAA-GATCT 1195 consensus_15106#3 ------------------------------------------------------------ consensus_15106#1 ACACAANACAGTNTGGCGCACATTTTGAACGATTGAGNCCNCTCGCAAGTNCCTTCAGTC 225 consensus_15106#2 ACACAAA-CAGTGTGGCGCACATTATGAACGAT-GAGACCACTCGCAAGTACCTTCAGTC 209 consensus_15106#0 ACACAAA-CAGTGTGGCGCACATTATGAACGAT-GAGACCACTCGCAAGTACCTTCAGTC 1253 consensus_15106#3 ------------------------------------------------------------ consensus_15106#1 AATCAAGNGGCTTTTGNCCCTTTGCCAGCGNCGTTATCCTGCTCTGCCCTCAAAATCGGT 285 consensus_15106#2 AATCAAGAGGCTTATGACCCTTTGCCAGCGACGTTATCCTGCTCTGCCCTCAAAATCGGT 269 consensus_15106#0 AATCAAGAGGCTTATGACCCTTTGCCAGCGACGTTATCCTGCTCTGCCCTCAAAATCGGT 1313 consensus_15106#3 ----AAGAGGCTTATGACCCTTTGCCA-CGACGTTATCCTGCTCTGCCCTCAAAATCGGT 55 *** ***** ** ********** ** ***************************** consensus_15106#1 GGAGTTCAACAGCCTGGCAAATGGGAGTGNCCTGCAGGCCCTTTTNTCAGNGGNGAAAGA 345 consensus_15106#2 GGAGTTCAACAGCCTGGCAAATGGGAGTGACCTGCAGGCCCTTTTGTCAGAGGAGAAAGA 329 consensus_15106#0 GGAGTTCAACAGCCTGGCAAATGGGAGTGACCTGCAGGCCCTTTTGTCAGAGGAGAAAGA 1373 consensus_15106#3 GGAGTTCAACAGCCTGGCAAATGGGAGTGACCTGCAGGCCCTTTTGTCAGAGGAGAAAGA 115 ***************************** *************** **** ** ****** consensus_15106#1 TCCNGGAANCCCTCCTNGCGNGGATAGGCTTCGACTCATGCCAGCGTCAAAAGAGTG-AT 404 consensus_15106#2 TCCAGGAAACCCTCCTAGCGAGGATAGGCTTGGACTCATGCCAGCGTCAAAAGAGTG-AT 388 consensus_15106#0 TCCAGGAAACCCTCCTAGCGAGGATAGGCTTCGACTCATGCCAGCGTCAAAAGAGTG-AT 1432 consensus_15106#3 TCCAGGAAACCCTCCTAGCGAGGATAGGCTTCGACTCATGCCAGCGTCCAAAGAGTGGAT 175 *** **** ******* *** ********** **************** ******** ** consensus_15106#1 GCTTCAACGCACA-AGCTTGGATCNCAAATAGAATAT-TTGTAATCTGTG-TAATGTGTA 461 consensus_15106#2 GCTTCAACGCCCA-AGCTTGGATCACAAATAGAATAT-TTGTAATCTGTG-TAATGTGTA 445 consensus_15106#0 GCTTCAACGCACA-AGCTTGGATCACAAATAGAATAT-TTGTAATCTGTG-TAATGTGTA 1489 consensus_15106#3 GCTTCAACGCACACAGCTTGGATCNCCAATAGAATATGTTGTAATCTGTGGTAATGTGTA 235 ********** ** ********** * ********** ************ ********* consensus_15106#1 AACCAAAT---TTTCCTGCTCTTATTTTCATTTTTGT--------ACTCTT--GCA-AGA 507 consensus_15106#2 AACCAAAT---TTTCCTGCTCTTATTTTCATTTTTGT--------ACTCTT--GCA-AGA 491 consensus_15106#0 AACCAAAT---TTTCCTGCTCTTATTTTCATTTTTGT--------ACTCTT--GCA-AGA 1535 consensus_15106#3 AACCCAATGTGTTGCCTGCTGCTGTATTGTTGCATGTTGTTGGTGACTCCTTGGCACAGA 295 **** *** ** ****** * * ** * *** **** * *** *** consensus_15106#1 ATTTGAGAATATTGCCTG-CTNATC-AAATTNCTGNNGNAN-GCAAAAAAAAAAAAAAAA 564 consensus_15106#2 ATCTGAGAATATTGCCGG-CTAATC-AAATTACTGAAGAAA-GCAAAAAAAAAAAAAAA- 547 consensus_15106#0 ATCTGAGAATATTGCCTG-CTAATC-AAATTACTGAAGAAA-GCAATATACTGTCTGCTT 1592 consensus_15106#3 ACCTGAGAATATTGCCTGGCTAATCCAAATTACTGAAGAAACGCCATATACTGTCTGCTT 355 * ************* * ** *** ***** *** * * ** * * * consensus_15106#1 AAAAAAAAAAAAAAAAAAAAAAAA------------------------------------ 588 consensus_15106#2 ------------------------------------------------------------ consensus_15106#0 CTCTCCTAAAAAAAAAAAAAAA-------------------------------------- 1614 consensus_15106#3 CTCTCCTAGAAGAGTTCACTGGCTAAGGTTCCATGTGTAAGTTTGGTTGAATAAAACCCT 415 consensus_15106#1 ------------------------------ consensus_15106#2 ------------------------------ consensus_15106#0 ------------------------------ consensus_15106#3 TCTAATGTCTTTGCTGTGCCAAAAAAAAAA 445 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||