These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15128#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1233 fasta sequence [CGAATTCCCTTGGACCTGACTGGACTGAAGGAGTAGAAAAACACAACGACATCCTCTCCTCATCGCCTTCTAGAAACATCCCACGACGAGCCTCTCCTCTGATCCTCTCCTCCCCCACTCCACCGCCACCGCCGCCGTCGCCGCTGCCGCCGCCGCCGCGCGAGGAGGACGGGCGGATCTCCCAATGAGGTGTGAGGCTTGTTGATTGGGGAGCTGCTGGTTGTAGTTTGCAATTGCAAATGGTGGATTCCTCGGAAGGGCTCCGACGGCTCGCCGCGTTGCTGTTCAAGTGCTGCAGCCTTGACAGCTCCAATCGTCCCAACGGCCTGCAGGATCCTGAACGGTTGGCGAGGGAAACAGTTTTTAACGTAAATGAAATAGAGGCGCTGTATGAGCTGTTCAAGAAGATTAGCAGTGCTGTGGTTGATGATGGCTTGATCAATAAGGAAGAATTCCAACTGGCACTGTTTAAGACCAACAGAAAAGACAGCATGTTTGCTGATCGGGTATTTGATTTGTTTGACACGAAGCACAATGGGATTCTTGGATTCGAAGAATTTGCACGGGCTCTTTCTGTGTTTCATCCCAATGCTCCAATTGATGACAAAATTGATTTTGCTTTCAAACTTTATGATCTCAAACAACAAGGTTTCATTGAGAAGCAAGAGGTGAAGCAAAT-GGTGGTCG-CCAC-ACTTGCTGAAT-CAGGAATGAACCTTTCAGATGAGATTATAGAAGGC-ATTATTGACAAGACATTTGAGGAAGCAGATACAAAGCATGATGGGAAAATTGA-CAAGGAGGAGTGGCGCAACCTTGTGTTGAGGCATCCATCTTTATTAAAGAATATGACACTCCCATATCTCAGGGATATAACTACAACATTTCCAAGTTTTGTATTCAACTCCCAGGTTGAGGACGCATGAGGTCAAGCTTCAGACCATATTCTAGGGTCCAGTTCGTTTTATTTCATTTTGTTGATATCTTTCTCGTGCTTGGAACAAACTTTTATGATTGCTCCGCTTCAAGATGTGAATCCGTAGCAAGGATGAAGTTTTTACCATTTTTTA-TGTATATACTTGAAGATGGCCTTCAACTCTTCATGTGTAGACTTGTAGGATGAACCGTTTCTCGTGATGTAGAAATGTTCTTCAATCCTAAGATAAACGGTTGCCTCTAAAAAAAGCAACTCTCGTTACCGAGTATGCAAACCTAGGTCCTCTTCTACCCAAAAAAAAA] [+] EMBL CF328494 [CGAATTCCCTTGGACCTGACTGGACTGAAGGAGTAGAAAAACACAACGACATCCTCTCCTCATCGCCTTCTAGAAACATCCCACGACGAGCCTCTCCTCTGATCCTCTCCTCCCCCACTCCACCGCCACCGCCGCCGTCGCCGCTGCCGCCGCCGCCGCGCGAGGAGGACGGGCGGATCTCCCAATGAGGTGTGAGGCTTGTTGATTGGGGAGCTGCTGGTTGTAGTTTGCAATTGCAAATGGTGGATTCCTCGGAAGGGCTCCGACGGCTCGCCGCGTTGCTGTTCAAGTGCTGCAGCCTTGACAGCTCCAATCGTCCCAACGGCCTGCAGGATCCTGAACGGTTGGCGAGGGAAACAGTTTTTAACGTAAATGAAATAGAGGCGCTGTATGAGCTGTTCAAGAAGATTAGCAGTGCTGTGGTTGATGATGGCTTGATCAATAAGGAAGAATTCCAACTGGCACTGTTTAAGACCAACAGAAAAGACAGCATGTTTGCTGATCGGGTATTTGATTTGTTTGACACGAAGCACAATGGGATTCTTGGATTCGAAGAATTTGCACGGGCTCTTTCTGTGTTTCATCCCAATGCTCC ] [+] EMBL CF308813 [ CCTCTCCTCATCGCCTTCTAGAAACATCCCACGACGAGCCTCTCCTCTGATCCTCTCCTCCCCCACTCCACCGCCACCGCCGCCGTCGCCGCTGCCGCCGCCGCCGCGCGAGGAGGACGGGCGGATCTCCCAATGAGGTGTGAGGCTTGTTGATTGGGGAGCTGCTGGTTGTAGTTTGCAATTGCAAATGGTGGATTCCTCGGAAGGGCTCCGACGGCTCGCCGCGTTGCTGTTCAAGTGCTGCAGCCTTGACAGCTCCAATCGTCCCAACGGCCTGCAGGATCCTGAACGGTTGGCGAGGGAAACAGTTTTTAACGTAAATGAAATAGAGGCGCTGTATGAGCTGTTCAAGAAGATTAGCAGTGCTGTGGTTGATGA ] [+] EMBL AK111505 [ CCCCACTCCACCGCCACCGCCGCCGTCGCCGCTGCCGCCGCCGCCGCGCGAGGAGGACGGGCGGATCTCCCAATGAGGTGTGAGGCTTGTTGATTGGGGAGCTGCTGGTTGTAGTTTGCAATTGCAAATGGTGGATTCCTCGGAAGGGCTCCGACGGCTCGCCGCGTTGCTGTTCAAGTGCTGCAGCCTTGACAGCTCCAATCGTCCCAACGGCCTGCAGGATCCTGAACGGTTGGCGAGGGAAACAGTTTTTAACGTAAATGAAATAGAGGCGCTGTATGAGCTGTTCAAGAAGATTAGCAGTGCTGTGGTTGATGATGGCTTGATCAATAAGGAAGAATTCCAACTGGCACTGTTTAACACCAACAGAAAAGACAGCATGTTTGCTGATCGGGTATTTGATTTGTTTGACACGAAGCACAATGGGATTCTTGGATTCGAAGAATTTGCACGGGCTCTTTCTGTGTTTCATCCCAATGCTCCAATTGATGACAAAATTGATTTTGCTTTCAAACTTTATGATCTCAAACAACAAGGTTTCATTGAGAAGCAAGAGGTGAAGCAAAT GGTGGTCG CCAC ACTTGCTGAAT CAGGAATGAACCTTTCAGATGAGATTATAGAAGGC ATTATTGACAAGACATTTGAGGAAGCAGATACAAAGCATGATGGGAAAATTGA CAAGGAGGAGTGGCGCAACCTTGTGTTGAGGCATCCATCTTTATTAAAGAATATGACACTCCCATATCTCAGGGATATAACTACAACATTTCCAAGTTTTGTATTCAACTCCCAGGTTGAGGACGCATGAGGTCAAGCTTCAGACCATATTCTAGGGTCCAGTTCGTTTTATTTCATTTTGTTGATATCTTTCTCGTGCTTGGAACAAACTTTTATGATTGCTCCGCTTCAAGATGTGAATCCGTAGCAAGGATGAAGTTTTTACCATTTTTTA TGCATATACTTGAAGATGGCCTTCAACTCTTCATGTGTAGACTTGTAGGATGAACCGTTTCTCGTGATGTAGAAATGTTCTTCAATCCTAAGATAAACGGTTGC ] [+] EMBL CF196839 [ CCGCCGCCGCGCGAGGAGGACGGGCGGATCTCCCAATGAGGTGTGAGGCTTGTTGATTGGGGAGCTGCTGGTTGTAGTTTGCAATTGCAAATGGTGGATTCCTCGGAAGGGTTCCGACGGCTCGCCGCGTTGCTGTTCAAGTGCTGCAGCCTTGACAGCTCCAATCGTCCCAACGGCCTGCAGGATCCTGAACGGTTGGCGAGGGAAACAGTTTTTAACGTAAATGAAATAGAGGCGCTGTATGAGCTGTTCAAGAAGATTAGCAGTGCTGTGGTTGATGATGGCTTGATCAATAAGGAAGAATTCCAACTGGCACTGTTTAAGACCAACAGAAAAGACAGCATGTTTGCTGATCGGGTATTTGATTTGTTTGACACAAAGCACAATGGGATTCTTGGATTCGAAGAATTTGCACGGGCTCTTTCTGTGTTTCATCCCAATGCTCCAATTGATGACAAAATTGATTTTGCTTTCAAACTTTATGATCTCAAACAACAAGGTTTCATTGAGAAGCAAGAGGTGAAGCAAAT GGTGGTCG CCAC ACTTGCTGAAT CNNNAATGAACCTTNCANNTGAGNNNATAGAAGGC ATTATTGACnn ] [-] EMBL CF308814 [ TGATTTGTTTGACACGAAGCACAATGGGATTCTTGGATTCGAAGAATTTGCACGGGCTCTTTCTGTGTTTCATCCCAATGCTCCAATTGATGACAAAATTGATTTTGCTTTCAAACTTTATGATCTCAAACAACAAGGTTTCATTGAGAAGCAAGAGGTGAAGCAAAT GGTGGTCG CCAC ACTTGCTGAAT CAGGAATGAACCTTTCAGATGAGATTATAGAAGGC ATTATTGACAAGACATTTGAGGAAGCAGATACAAAGCATGATGGGAAAATTGA CAAGGAGGAGTGGCGCAACCTTGTGTTGAGGCATCCATCTTTATTAAAGAATATGACACTCCCATATCTCAGGGATATAACTACAACATTTCCAAGTTTTGTATTCAACTCCCAGGTTGAGGACGCATGAGGTCAAGCTTCAGACCATATTCTAGGGTCCAGTTCGTTTTATTTCATTTTGTTGATATCTTTCTCGTGCTTGGAACAAACTTTTATGATTGCTCCGCTTCAAGATGTGAATCCGTAGCAAGGATGAAGTTTTTACCATTTTTTA TGTATATACTTGAATATGGCCTTCAAaaaa ] [+] EMBL AU082672 [ GGATTCTTGGATTCGAAGAATTTGCACGGGNTCTTTCTGTGTTTCATCCC ATGCTCCAATTGATGACAAAATTGATTTTGCTTTCAAACTTTATGATCTCAAACAACAAGGTTTCATTGAGAAGCAAGAGGTGAAGCAAAT GGTGGTCG CCAC ACTTGCTGAAT CAGGAATGAACCTTTCAGATGAGATTATAGAAGGC ATTATTGACAAGACATTTGAGGAAGCAGATACAAAGCATGATGGGAAAATTGA CAAGGAGGAGTGGCGCAACCTTGTGTTGAGGCATCCATCTTTATTAAAGAATATGACACTCCCATATCTCAGGGATATAACTACAACATTTCCAAGTTTTGTATTCAACTCCCAGGTTGAGGACGCATGAGGTCAAGCTTCAGACCATATTCTAGGGTCCAGTTCGTTTTATTTCATTTTGTTGATATCTTTCTCGTGCTTGGAACAAACTTTTATGATTGCTCCGCTTCAAGATGTGAATCCGTAGCAAGGATGAAGTTTTTACCATTTTTTA TGTATATACTTGAAGATGGCCTTCAACTCTTCATGTGTAGACTTGTAGGATGAACCGTTTCTCGTGATGTAGAAATGTTCTTCAATCCTAAGATAAACGGTTGCCTCTACCGTCAGCAACTCTCGTTACCGAGTATGCAAACCTAGGTCCTCTTCTACCCAAAAAAAAA] [+] EMBL CA998498 [ TCTTGGATTCGAAGAATTTGCACGGGCTCTTTCTGTGTTTCATCCCAATGCTCCAATTGATGACAAAATTGATTTTGCTTTCAAACTTTATGATCTCAAACAACAAGGTTTCATTGAGAAGCAAGAGGTGAAGCAAAT GGTGGTCG CCAC ACTTGCTGAAT CAGGAATGAACCTTTCAGATGAGATTATAGAAGGC ATTATTGACAAGACATTTGAGGAAGCAGATACAAAGCATGATGGGAAAATTGA CAAGGAGGAGTGGCGCAACCTTGTGTTGAGGCATCCATCTTTATTAAAGAATATGACACTCCCATATCTCAGGGATATAACTACAACATTTCCAAGTTTTGTATTCAACTCCCAGGTTGAGGACGCATGAGGTCAAGCTTCAGACCATATTCTAGGGTCCAGTTCGTTTTATTTCATTTTGTTGATATCTTTCTCGTGCTTGGAACAAACTTTTATGATTGCTCCGCTTCAAGATGTGAATCCGTAGCAAGGATGAAGTTTTTACCATTTTTTA TGTATATACTTGAAGATGGCCTTCAAC ] [-] EMBL CF328495 [ TTGGATTCGAAGAATTTGCACGGGCTCTTTCTGTGTTTCATCCCAATGCTCCAATTGACGACAAAATTGATTTTGCTTTCAAACTTTATGATCTCAAACAACAAGGTTTCATTGAGAAGCAAGAGGTGAAGCAAAT GGTGGTCG CCAC ACTTGCTGAAT CAGGAATGAACCTTTCAGATGAGATTATAGAAGGC ATTATTGACAAGACATTTGAGGAAGCAGATACAAAGCATGATGGGAAAATTGA CAAGGAGGAGTGGCGCAACCTTGTGTTGAGGCATCCATCTTTATTAAAGAATATGACACTCCCATATCTCAGGGATATAACTACAACATTTCCAAGTTTTGTATTCAACTCCCAGGTTGAGGACGCATGAGGTCAAGCTTCAGACCATATTCTAGGGTCCAGTTCGTTTTATTTCATTTTGTTGATATCTTTCTCGTGCTTGGAACAAACTTTTATGATTGCTCCGCTTCAAGATGTGAATCCGTAGCAAGGATGAAGTTTTTACCATTTTTTAGTGTATATACTTGAAGATGGCCTTCAAaaaaaaaaa ] [-] EMBL CF309473 [ CAATGCTCCAATTGATGACAAAATTGATTTTGCTTTCAAACTTTATGATCTCAAACAACAAGGTTTCATTGAGAAGCAAGAGGTGAAGCAAAT GGTGGTCG CCAC ACTTGCTGAAT CAGGAATGAACCTATCAGATGAGATTATAGAAGGC ATTATTGACAAGACACTTGAGGAAGCAGATACAAAGCATGATGGGAAAATTGA CAAGGAGGAGTGGCGCAACCTTGTGTTGAGGCATCCATCTTTATTAAAGAATATGACACTCCCATATCTCAGGGATATAACTACAACATTTCCAAGTTTTGTATTCAACTCCCAGGTTGAGGACGCATGAGGTCAAGCTTCAGACCATATTCTAGGGTCCAGTTCGTTTTATTTCATTTTGTTGATATCTTTCTCGTGCTTGGAACAAACTTTTATGATTGCTCCGCTTCAAGATGTGAATCCGTAGCAAGGATGAAGTTTTTACCATTTTTTA TGTATATACTTGAAGATGGCCTTCAACTCTTCATGTGTAGACTTGTAGGATGAACCGTTTCTCGTGATGTAGAAATGTTCTTCAATCCTAAGATAAACGGTTGCCTCTAAAAAA ] [+] EMBL BI806966 [ TCATTGAGAAGCAAGAGGTGAA CAAATGGGTGGTCG CCAC ACTTGCTGAATCCAGGAATGAACCTTTCAGATGAGATTATAGAAGGC ATTATTGACAAGACATTTGAGGAA CAGATACAAAGCATGATGGGAAAATTGACCAAGGAGGAGTGGCGCAACCTTGTGTTGAGGCATCCATCTTTATTAAAGAATATGACACTCCCATATCTCAGGGATATAACTACAACATTTCCAAGTTTTGTATTCAACTCCCAGGTTGAGGACGCATGAGGTCAAGCTTCAGACCATATTCTAGGGTCCAGTTCGTTTTATTTCATTTTGTTGATATCTTTCTCGTGCTTGGAACCNACTTTTATGATTGCTCCGCTTCAAGATGTGAATCCGTAGCAAGGATGAAGTTTTTACCATTTTTTA TGTATATACTTGAAGATGGCCTTCAACTCTTCATGTGTAGACTTGTAGGATGAACCGTTTCTCGTGATGTAGAAATGTTCTTCAATCCTCAGATAAACGGTTGCCTCTAAAAAAA ] [+] EMBL AU056635 [ GTCGCCCACAACTTGCTGAAT CAGNAATGAACCTTTCAGATGAGATTATAGAAGGCAATTATTGACAAGACATTTGAGGAAGCAGATACAAAGCATGATGGGAAAATTGA CAAGGAGGAGTGGCGCAACCTTGTGTTGAGGCATCCATCTTTANTAAAGAATATGACACTCCCATATCTCAGGGATATAACTACAACATTTCCAAGTTTTGTATTCAACTCCCNGGTTGAGGACGCATGAGGTCAAGCTTCAGACCATATTCTAGGGTCCAGTTCGTTTTATTTCATTTTGTTGATATCTTTCTCGTGCTTGGAACAAACTTTTATGATT NTCCGCTTCAAGATGTGAATCCGTAGCAAGGATGAAGTTTTTACCATTTTTTA TGTATATACTTGAAGATGGCCTTCAACTCTTCATGTGTAGACTTGTAGGATGAACCGTTTCTCGTGATGTAGAAATGTTCTTCAATCCTAAGATAAACGGTTGCCTCTAAAAAAAa ] consensusID : consensus_15128#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1024 fasta sequence [CATGGATTGAAGGAGTAGAAATGAGGCTTGTTGATTGGGGAGCTGCTGGTTGTAGTTTGCAATTGCAAATGGTGGATTCCTCGGAAGGGCTCCGACGGCTCGCCGCGTTGCTGTTCAAGTGCTGCAGCCTTGACAGCTCCAATCGTCCCAACGGCCTGCAGGATCCTGAACGGTTGGCGAGGGAAACAGTTTTTAACGTAAATGAAATAGAGGCGCTGTATGAGCTGTTCAAGAAGATTAGCAGTGCTGTGGTTGATGATGGCTTGATCAATAAGGAAGAATTCCAACTGGCACTGTTTAAGACCAACAGAAAAGACGGCATGTTTGCTGATCGGGTATTTGATTTGTTTGACACGAAGCACAATGGGATTCTTGGATTCGAAGAATTTGCACGGGCTCTTTCTGTGTTTCATCCCAATGCTCCAATTGATGACAAAATTGATTTTGCTTTCAAACTTTATGATCTCAAACAACAAGGTTTCATTGAGAAGCAAGAGGTGAA-CAAATGGTGGTCGCCACACTTGCTGAATCAGGAATGAACCTTTCAGATGAGATTATAGAAGGCATTATTGACAAGACATTTGAGGAAGCAGATACAAAGCATGATGGGAAAATTGACAA-GGAGGAGTGGCGCAA-CCTTGTGTTGAGGCATCCATCTTTATTAAAGAATATGACACTCCCATATCTCAGGGATATAACTACAACATTTCCAAGTTTTGTATTCAACTCCCAGGTTGAGGACGCATGAGGTCAAGCTTCAGACCATATTCTAGGGTCCAGTTCGTTTTATTTCATTTTGTTGATATCTTTCTCGTGCTTGGAACAAACTTTTATGATTGCTCCGCTTCAAGATGTGAATCCGTAGCAAGGATGAAGTTTTTACCATTTTTTATGTATATACTTGAAGATGGCCTTCAACTCTTCATGTGTAGACTTGTAGGATGAACCGTTTCTCGTGATGTAGAAATGTTCTTCAATCCTAAGATAAACGGTTGCCTCTACCGTCAGCAAAAAAAAAAAAAAA] [+] EMBL CF309472 [CATGGATTGAAGGAGTAGAAATGAGGCTTGTTGATTGGGGAGCTGCTGGTTGTAGTTTGCAATTGCAAATGGTGGATTCCTCGGAAGGGCTCCGACGGCTCGCCGCGTTGCTGTTCAAGTGCTGCAGCCTTGACAGCTCCAATCGTCCCAACGGCCTGCAGGATCCTGAACGGTTGGCGAGGGAAACAGTTTTTAACGTAAATGAAATAGAGGCGCTGTATGAGCTGTTCAAGAAGATTAGCAGTGCTGTGGTTGATGATGGCTTGATCAATAAGGAAGAATTCCAACTGGCACTGTTTAAGACCAACAGAAAAGACGGCATGTTTGCTGATCGGGTATTTGATTTGTTTGACACGAAGCACAATGGGATTCTTGGATTCGAAGAATTTGCACGGGCTCTTTCTGTGTTTCATCCCAATGCTCCAATTGATGACAAAATTGATTTTGCTTTCAAACTTTATGATCTCAAACAACAAGGTTTCATTGAGAAGCAAGAGGTGAA CAAATGGTGGTCGCCACACTTGCTGAATCAGGAATGAACCTATCAGATGAGATTATAGAAGGCATTATTGACAAGACACTTGAGGAAGCAGATACAAAGCATGATGGGAAAATTG CAAGGGAGGAGTGGCGCAACCCTTGTGTTGAGGCATCCATCTTTATTAAAGAATATGACACT ] [+] EMBL AU083358 [ CACGGGCTCTTTCTGTGTTTCATCCCAATGCCCCAATTGATGAC AAATTGATTTTGCTTTCAAACTTTATGATCTCAAACAACAAGGTTTCATTGAGAANCAAGAGGTGAAGCAAATGGTGGTCGCCACACTTGCTGAATCAGGAATGACCCTTTCAGATGAGATTATAGAAGGCATTNTTGACAAGACATTTGAGGAAGCAGATNCAAAGCATGATGGGAAAATTGACAA GGAGGAGTGGCGCAA CCTTGTGTTGAGGCATCCATCTTTATTAAAGAATATGACACTCCCATATCTCAGGGATATAACTACAACATTTCCAAGTTTTGTATTCAACTCCCAGGTTGAGGACGCATGAGGTCAAGCTTCAGACCATATTCTAGGGTCCAGTTCGTTTTATTTCATTTTGTTGATATCTTTCTCGTGCTTGGAACAAACTTTTATGATTGCTCCGCTTCAAGATGTGAATCCGTAGCAAGGATGAAGTTTTTACCATTTTTTATGTATATACTTGAAGATGGCCTTCAACTCTTCATGTGTAGACTTGTAGGATGAACCGTTTCTCGTGATGTAGAAATGTTCTTCAATCCTAAGATAAACGGTTGCCTCTACCGTCAGCAAAAAAAAAAAAAAA] [-] EMBL CF279880 [ TGAACCTTTCAGATGAGATTATAGAAGGCATTATTGACAAGACATTTGAGGAAGCAGATACAAAGCATGATGGGAAAATTGACAA GGAGGAGTGGCGCAA CCTTGTGTTGAGGCATCCATCTTTATTAAAGAATATGACACTCCCATATCTCAGGGATATAACTACAACATTTCCAAGTTTTGTATTCAACTCCCAGGTTGAGGACGCATGAGGTCAAGCTTCAGACCATATTTTAGGGTCCAGCTCGTTTTATTTCATTTTGTTGATATCTTTCTCGTGCTTGGAACAAACTTTTATGATTGCTCCGCTTCAAGATGTGAATCCGTAGCAAGGATGAAGTTTTTACCATTTTTTATGTATATACTTGAAGATGGCCTTCAACTCTTCATGTGTAGACTTGTAGGATGAACCGTTTCTCGTGATGTAGAAATGTTCTTCAATCCTAAGATAAACGGTTGCCTCTCCCGTCA AAAAAAAAAAAA ] [+] EMBL CA766361 [ CAA CCTTGTGTTGAGGCATCCATCTTTATTAAAGAATATGACACTCCCATATCTCAGGAATATAACTACAACATTTCCAAGTTTTGTATTCAACTCCCAGGTTGAGGACGCATGAGGTCAAGCTTCAGACCATATTCTAGGGTCCAGTTCGTTTTATTTCATTTTGTTGATATCTTTCTCGTGCTTGGAACAAACTTTTATGATTGCTCCGCTTCAAGATGTGAATTCGTAGCAAGGATGAAGTTTTTACCATTTTTTATGTATATACTTGAAGATGGCCTTCAACTCTTCATGTGTAGACTTGTAGGATGAACCGTTTCTCGTGATGTAGAAATGTTCTTCAATCCTAAGATAAACGGTTGCCTC ] consensusID : consensus_15128#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 636 fasta sequence [CATGGACTGAGGAGTAGAAAATCCCCGACGAGCCTCTCCTCTGATCCTCTCCTCCCCCACTCCACCGCCACCGCCGCCGTCGCCGCTGCCGCCGCCGCCGCGCGAGGAGGACGGGCGGATCTCCCAATGAGGTGTGAGGCTTGTTGATTGGGGAGCTGCTGGTTGTAGTTTGCAATTGCAAATGGTGGATTCCTCGGAAGGGCTCCGACGGCTCGCCGCGTTGCTGTTCAAGTGCTGCAGCCTTGACAGCTCCAATCGTCCCAACGGCCTGCAGGATCCTGAACGGTTGGCGAGGGAAACAGTTTTTAACGTAAATGAAATAGAGGCGCTGTATGAGCTGTTCAAGAAGATTAGCAGTGCTGTGG-TTGATGATGGCTTGATCAATAAGGAAGAATTCCAACTGGCACTGTTTAAGACCAACA-GAAAAGACAGCATGTTT-GCTGA-TCGGGTATTTGATTTGTTTGACACGAAGCACAAT-GGGATTCTTG-GATTCGAAGAATTT-GCACGGGC-TC-TTTCTGTGTTTCATCCCAATGCTCCAATTGATGACAAAATTGATTTTGCTTTCAAAC-TTTATGATCTCAAACAACAAGGTTTCATTGAGAAGCAAGAGGTGAAGCAAATGGGTGGTCGCCACAC] [+] EMBL CF336464 [CATGGACTGAGGAGTAGAAAATCCCCGACGAGCCTCTCCTCTGATCCTCTCCTCCCCCACTCCACCGCCACCGCCGCCGTCGCCGCTGCCGCCGCCGCCGCGCGAGGAGGACGGGCGGATCTCCCAATGAGGTGTGAGGCTTGTTGATTGGGGAGCTGCTGGTTGTAGTTTGCAATTGCAAATGGTGGATTCCTCGGAAGGGCTCCGACGGCTCGCCGCGTTGCTGTTCAAGTGCTGCAGCCTTGACAGCTCCAATCGTCCCAACGGCCTGCAGGATCCTGAACGGTTGGCGAGGGAAACAGTTTTTAACGTAAATGAAATAGAGGCGCTGTATGAGCTGTTCAAGAAGATTAGCAGTGCTGTGG TTGATGATGGCTTGATCAATAAGGAAGAATTCCAACTGGCACTGTTTAAGACCAACA GAAAAGACAGCATGTTT GCTGA TCGGGTATTTGATTTGTTTGACACGAAGCACAAT GGGATTCTTG GATTCGAAGAATTT GCACGGGC TC TTTCTGTGTTTCATCCCAATGCTCCAATTGATGACAAAATTGATTTTGCTTTCAAAC TTTATGATCTCAAACAACAAGGTTTCATTGAGAAGCAAGAGGTGAAGCAAATGGGTGGTCGCCACAC] [+] EMBL AU165961 [ CCGCCGTCGCCGCTGCCGCCGCCGCCGCGCGAGGAGGACGGGCGGATCTCCCAATGAGGTGTGAGGCTTGTTGATTGGGGAGCTGCTGGTTGTAGTTTGCAATTGCAAATGGTGGATTCCTCGGAAGGGCTCCGACGGCTCGCCGCGTTGCTGTTCAAGTGCTGCAGCCTTGACAGCTCCAATCGTCCCAACGGCCTGCAGGATCCTGAACGGTTGGCGAGGGAAACAGTTTTTAACGTAAATGAAATAGAGGCGCTGTATGAGCTGTTCAAGAAGATTAGCAGTGCTGTGGNTGGATGATGGCTTGATCAATAAGGAAGAATTCCAACTGGCACTGTTTAAGACCAACAGGAAAAGACAGCATGTTTGGCTGATTCGGGTATTTGATTTGTTTGACACGAAGCACAATGGGGATTCTTGNGATTCGAAGAATTTGGCACGGGCTTCTTTTCTGTGTTTCATCCCAATGCTCCAATTGATGACAAAATTGATTTTGNTTTCAAACTTTTATGATCT ] [+] EMBL CF279881 [ TGCCGCCGCCGCCGCGCGAGGAGGACGGGCGGATCTCCCAATGAGGTGTGAGGCTTGTTGATTGGGGAGCTGCTGGTTGTAGTTTGCAATTGCAAATGGTGGATTCCTCGGAAGGGCTCCGACGGCTCGCCGCGTTGCTGTTCAAGTGCTGCAGCCTTGACAGCTCCAATCGACCCAACGGCCTGCAGGATCCTGAACGGTTGGCGAGGGAAACAGTTTTTAACGTAAATGAAATAGAGGCGCTGTATGAGCTGTTCAAGAAGATTAGCAGTGCTGTGG TTGATGATGGCTTGATCAATAAGGAAGAATTCCAACTGGCACTGTTTA ] consensusID : consensus_15128#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 375 fasta sequence [CGAGCCGCCGCCGGGGAGGAAGGMCGGGGCGGATCTCCCAATGAGGTGTGAGGCTBKTTRTTTGGGAGCTCTCTKTGKTGTAGKTTKCAATTGCAAATGTGTKGGTTTCYCGCGGAGGGGSTCTCCGCGCGCTCTCGCCCGCGTTGCTGTTCAAGTGCTGCAGCCTTGACAGCTCCAATCGTCCCAACGCYCTGCAGGATCCTGAACGSTTGGCGAGRGAAACAGTTTTTAACGTAAATGAAATAGAGGCGCTGTATGAGCTGTTCAAGAAGATTAGCAGTGCTGTGGTTGATGATGGCTTGAWCAATAAGGAAGAATTCCAACTGGCACTGTTTAAGACCAACAGAAAAGACAGCATGTTTGCTGATCGGGTAT] [+] EMBL BE229497 [CGAGCCGCCGCCGGGGAGGAAGGMCGGGGCGGATCTCCCAATGAGGTGTGAGGCTBKTTRTTTGGGAGCTCTCTKTGKTGTAGKTTKCAATTGCAAATGTGTKGGTTTCYCGCGGAGGGGSTCTCCGCGCGCTCTCGCCCGCGTTGCTGTTCAAGTGCTGCAGCCTTGACAGCTCCAATCGTCCCAACGCYCTGCAGGATCCTGAACGSTTGGCGAGRGAAACAGTTTTTAACGTAAATGAAATAGAGGCGCTGTATGAGCTGTTCAAGAAGATTAGCAGTGCTGTGGTTGATGATGGCTTGAWCAATAAGGAAGAATTCCAACTGGCACTGTTTAAGACCAACAGAAAAGACAGCATGTTTGCTGATCGGGTAT] consensusID : consensus_15128#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 296 fasta sequence [GCATCCATCTTTATTAAAGAATATGACACTCCCATATTTCAGGGATATAACTACAACATTTCCAAGTTTTGTATTCAACTCCCAGGTTGAGGACGCATGAGGTCAAGTTTCAGACCATATTTTAGGGTCCAGTTCGTTTTATTTCATTTTGTTGATATCTTTTTGGGGCTTGGAACAAACTTTTATGATTGCTCCGCTTCAAAATGTGAATCCGTAGCAAGGATGAAGTTTTTACCATTTTTTATGTATATACTTGAAAATGGCCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CF336463 [GCATCCATCTTTATTAAAGAATATGACACTCCCATATTTCAGGGATATAACTACAACATTTCCAAGTTTTGTATTCAACTCCCAGGTTGAGGACGCATGAGGTCAAGTTTCAGACCATATTTTAGGGTCCAGTTCGTTTTATTTCATTTTGTTGATATCTTTTTGGGGCTTGGAACAAACTTTTATGATTGCTCCGCTTCAAAATGTGAATCCGTAGCAAGGATGAAGTTTTTACCATTTTTTATGTATATACTTGAAAATGGCCTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15128#2 ----------------------------------------------------------CA 2 consensus_15128#3 ------------------------------------------------------------ consensus_15128#0 CGAATTCCCTTGGACCTGACTGGACTGAAGGAGTAGAAAAACACAACGACATCCTCTCCT 60 consensus_15128#1 ------------------------------------------------------------ consensus_15128#4 ------------------------------------------------------------ consensus_15128#2 TGGACTGAGGAGTAGAAAATCCCCGACGAGCCTCTCCTCTGATCCTCTCCTCCCCCACTC 62 consensus_15128#3 ------------------------------------------------------------ consensus_15128#0 CATCGCCTTCTAGAAACATCCCACGACGAGCCTCTCCTCTGATCCTCTCCTCCCCCACTC 120 consensus_15128#1 ------------------------------------------------------------ consensus_15128#4 ------------------------------------------------------------ consensus_15128#2 CACCGCCACCGCCGCCGTCGCCGCTGCCGCCGCCGCCGCGCGAGGAGGACGGG-CGGATC 121 consensus_15128#3 -------------------------CGAGCCGCCGCCGGGGAGGAAGGMCGGGGCGGATC 35 consensus_15128#0 CACCGCCACCGCCGCCGTCGCCGCTGCCGCCGCCGCCGCGCGAGGAGGACGGG-CGGATC 179 consensus_15128#1 ----------------------------------------------------CATGGATT 8 consensus_15128#4 ----------------------------GCATCCATCTTTATTAAAGAATATGACACTCC 32 consensus_15128#2 TCCCAATGAGGTGTGAGGCT-TGTTGATTGGGGAGCTGCTG-----GTTGTAGTTTGCAA 175 consensus_15128#3 TCCCAATGAGGTGTGAGGCT-BKTTRTTTGGGAGCTCTCTKT----GKTGTAGKTTKCAA 90 consensus_15128#0 TCCCAATGAGGTGTGAGGCT-TGTTGATTGGGGAGCTGCTG-----GTTGTAGTTTGCAA 233 consensus_15128#1 GAAGGAGTAGAAATGAGGCT-TGTTGATTGGGGAGCTGCTG-----GTTGTAGTTTGCAA 62 consensus_15128#4 CATATTTCAGGGATATAACTACAACATTTCCAAGTTTTGTATTCAACTCCCAGGTTGAGG 92 ** * ** ** * ** ** consensus_15128#2 TTGCAAATG-GTGGATTCC---TCG----GAAGGGCTCCGACGGCTC---GCCGCGTTGC 224 consensus_15128#3 TTGCAAATGTGTKGGTTTC---YCGCGGAGGGGSTCTCCGCGCGCTCTCGCCCGCGTTGC 147 consensus_15128#0 TTGCAAATG-GTGGATTCC---TCG----GAAGGGCTCCGACGGCTC---GCCGCGTTGC 282 consensus_15128#1 TTGCAAATG-GTGGATTCC---TCG----GAAGGGCTCCGACGGCTC---GCCGCGTTGC 111 consensus_15128#4 ACGCATGAGGTCAAGTTTCAGACCATATTTTAGGGTCCAGTTCGTTTTATTTCATTTTGT 152 *** * ** * * * * * * * * *** consensus_15128#2 TGTTCAAGTGCTGCAGCCTTGAC--AGCTCCAATCGTCCCAACGGCCTGCAGGATCCTGA 282 consensus_15128#3 TGTTCAAGTGCTGCAGCCTTGAC--AGCTCCAATCGTCCCAACGCYCTGCAGGATCCTGA 205 consensus_15128#0 TGTTCAAGTGCTGCAGCCTTGAC--AGCTCCAATCGTCCCAACGGCCTGCAGGATCCTGA 340 consensus_15128#1 TGTTCAAGTGCTGCAGCCTTGAC--AGCTCCAATCGTCCCAACGGCCTGCAGGATCCTGA 169 consensus_15128#4 TGATATCTTTTTGGGGCTTGGAACAAACTTTTATGATTGCTCCG--CTTCAAAATG-TGA 209 ** * * ** ** * ** * ** ** * * ** ** ** ** *** consensus_15128#2 ACGGTTGGCGAGGGAAACAGTTTTTAACGTAAATGAAATAGAGGCGCTGTATGAGCTGTT 342 consensus_15128#3 ACGSTTGGCGAGRGAAACAGTTTTTAACGTAAATGAAATAGAGGCGCTGTATGAGCTGTT 265 consensus_15128#0 ACGGTTGGCGAGGGAAACAGTTTTTAACGTAAATGAAATAGAGGCGCTGTATGAGCTGTT 400 consensus_15128#1 ACGGTTGGCGAGGGAAACAGTTTTTAACGTAAATGAAATAGAGGCGCTGTATGAGCTGTT 229 consensus_15128#4 ATCCGTAGCAAGGATGA-AGTTTTTACCATTTTTTATGTATATAC-TTGAAAATGGCCTT 267 * * ** ** * ******** * * * * ** * * ** * * ** consensus_15128#2 CAAGAAGATTAGCAGTGCTGTGGTTGATGATGGCTTGATCAATAAGGAAGAATTCCAACT 402 consensus_15128#3 CAAGAAGATTAGCAGTGCTGTGGTTGATGATGGCTTGAWCAATAAGGAAGAATTCCAACT 325 consensus_15128#0 CAAGAAGATTAGCAGTGCTGTGGTTGATGATGGCTTGATCAATAAGGAAGAATTCCAACT 460 consensus_15128#1 CAAGAAGATTAGCAGTGCTGTGGTTGATGATGGCTTGATCAATAAGGAAGAATTCCAACT 289 consensus_15128#4 CAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------------------- 296 *** ** * * * * consensus_15128#2 GGCACTGTTTAAGACCAACAGAAAAGACAGCATGTTTGCTGATCGGGTATTTGATTTGTT 462 consensus_15128#3 GGCACTGTTTAAGACCAACAGAAAAGACAGCATGTTTGCTGATCGGGTAT---------- 375 consensus_15128#0 GGCACTGTTTAAGACCAACAGAAAAGACAGCATGTTTGCTGATCGGGTATTTGATTTGTT 520 consensus_15128#1 GGCACTGTTTAAGACCAACAGAAAAGACGGCATGTTTGCTGATCGGGTATTTGATTTGTT 349 consensus_15128#4 ------------------------------------------------------------ consensus_15128#2 TGACACGAAGCACAATGGGATTCTTGGATTCGAAGAATTTGCACGGGCTCTTTCTGTGTT 522 consensus_15128#3 ------------------------------------------------------------ consensus_15128#0 TGACACGAAGCACAATGGGATTCTTGGATTCGAAGAATTTGCACGGGCTCTTTCTGTGTT 580 consensus_15128#1 TGACACGAAGCACAATGGGATTCTTGGATTCGAAGAATTTGCACGGGCTCTTTCTGTGTT 409 consensus_15128#4 ------------------------------------------------------------ consensus_15128#2 TCATCCCAATGCTCCAATTGATGACAAAATTGATTTTGCTTTCAAACTTTATGATCTCAA 582 consensus_15128#3 ------------------------------------------------------------ consensus_15128#0 TCATCCCAATGCTCCAATTGATGACAAAATTGATTTTGCTTTCAAACTTTATGATCTCAA 640 consensus_15128#1 TCATCCCAATGCTCCAATTGATGACAAAATTGATTTTGCTTTCAAACTTTATGATCTCAA 469 consensus_15128#4 ------------------------------------------------------------ consensus_15128#2 ACAACAAGGTTTCATTGAGAAGCAAGAGGTGAAGCAAATGGGTGGTCGCCACAC------ 636 consensus_15128#3 ------------------------------------------------------------ consensus_15128#0 ACAACAAGGTTTCATTGAGAAGCAAGAGGTGAAGCAAATGG-TGGTCGCCACACTTGCTG 699 consensus_15128#1 ACAACAAGGTTTCATTGAGAAGCAAGAGGTGAA-CAAATGG-TGGTCGCCACACTTGCTG 527 consensus_15128#4 ------------------------------------------------------------ consensus_15128#2 ------------------------------------------------------------ consensus_15128#3 ------------------------------------------------------------ consensus_15128#0 AATCAGGAATGAACCTTTCAGATGAGATTATAGAAGGCATTATTGACAAGACATTTGAGG 759 consensus_15128#1 AATCAGGAATGAACCTTTCAGATGAGATTATAGAAGGCATTATTGACAAGACATTTGAGG 587 consensus_15128#4 ------------------------------------------------------------ consensus_15128#2 ------------------------------------------------------------ consensus_15128#3 ------------------------------------------------------------ consensus_15128#0 AAGCAGATACAAAGCATGATGGGAAAATTGACAAGGAGGAGTGGCGCAACCTTGTGTTGA 819 consensus_15128#1 AAGCAGATACAAAGCATGATGGGAAAATTGACAAGGAGGAGTGGCGCAACCTTGTGTTGA 647 consensus_15128#4 ------------------------------------------------------------ consensus_15128#2 ------------------------------------------------------------ consensus_15128#3 ------------------------------------------------------------ consensus_15128#0 GGCATCCATCTTTATTAAAGAATATGACACTCCCATATCTCAGGGATATAACTACAACAT 879 consensus_15128#1 GGCATCCATCTTTATTAAAGAATATGACACTCCCATATCTCAGGGATATAACTACAACAT 707 consensus_15128#4 ------------------------------------------------------------ consensus_15128#2 ------------------------------------------------------------ consensus_15128#3 ------------------------------------------------------------ consensus_15128#0 TTCCAAGTTTTGTATTCAACTCCCAGGTTGAGGACGCATGAGGTCAAGCTTCAGACCATA 939 consensus_15128#1 TTCCAAGTTTTGTATTCAACTCCCAGGTTGAGGACGCATGAGGTCAAGCTTCAGACCATA 767 consensus_15128#4 ------------------------------------------------------------ consensus_15128#2 ------------------------------------------------------------ consensus_15128#3 ------------------------------------------------------------ consensus_15128#0 TTCTAGGGTCCAGTTCGTTTTATTTCATTTTGTTGATATCTTTCTCGTGCTTGGAACAAA 999 consensus_15128#1 TTCTAGGGTCCAGTTCGTTTTATTTCATTTTGTTGATATCTTTCTCGTGCTTGGAACAAA 827 consensus_15128#4 ------------------------------------------------------------ consensus_15128#2 ------------------------------------------------------------ consensus_15128#3 ------------------------------------------------------------ consensus_15128#0 CTTTTATGATTGCTCCGCTTCAAGATGTGAATCCGTAGCAAGGATGAAGTTTTTACCATT 1059 consensus_15128#1 CTTTTATGATTGCTCCGCTTCAAGATGTGAATCCGTAGCAAGGATGAAGTTTTTACCATT 887 consensus_15128#4 ------------------------------------------------------------ consensus_15128#2 ------------------------------------------------------------ consensus_15128#3 ------------------------------------------------------------ consensus_15128#0 TTTTATGTATATACTTGAAGATGGCCTTCAACTCTTCATGTGTAGACTTGTAGGATGAAC 1119 consensus_15128#1 TTTTATGTATATACTTGAAGATGGCCTTCAACTCTTCATGTGTAGACTTGTAGGATGAAC 947 consensus_15128#4 ------------------------------------------------------------ consensus_15128#2 ------------------------------------------------------------ consensus_15128#3 ------------------------------------------------------------ consensus_15128#0 CGTTTCTCGTGATGTAGAAATGTTCTTCAATCCTAAGATAAACGGTTGCCTCTAAAAAAA 1179 consensus_15128#1 CGTTTCTCGTGATGTAGAAATGTTCTTCAATCCTAAGATAAACGGTTGCCTCTACCGTCA 1007 consensus_15128#4 ------------------------------------------------------------ consensus_15128#2 ------------------------------------------------------ consensus_15128#3 ------------------------------------------------------ consensus_15128#0 GCAACTCTCGTTACCGAGTATGCAAACCTAGGTCCTCTTCTACCCAAAAAAAAA 1233 consensus_15128#1 GCAAAAAAAAAAAAAAA------------------------------------- 1024 consensus_15128#4 ------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||