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Oryza sativa
cluster # 1514 cluster # 1514       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1514#0 length = 1721 sequences # 2  

consensusID : consensus_1514#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1721
fasta sequence
                              [TGAATTTCGCCGTCCCCTTGGCGGCGCCTCCTCTCCTTGCGAGTTCGCCCACCGCCTGCCTGCGCCGATCGATCTCCATAGGCGCCGTCTTCCTGCGGCTTCCGCCCGGGTTCTACCTTGGTTAACTATCAGGAAAGATGTCAAATAGGTCAAAGTTCTGGAGATTAGCAGCGCTAGTCCCTGAAGTGCAGTGTCCTGACCAGCCCATCTCTCCCCGTCAAAAATTTAAATACACGGCCATTGTACTTTTCATCTTTGTGACTGCCAGCCAAGTTCTATTGTATGGGATCCAACACCAACCTCGAACCATTGAGCCTGATCCATTACATTGGCTGCATCTGATTCTGGCGTCAAGCCGTAGTACTCTCTTGTCGCACGGGATCGTCGCTATTCTAGTACCTGAGGTTCTGGTGAAGATCTGGGTGTACCTAAAGATCATAACTCTCGATACCAGTGCACCTGAAACTGGTGTTCTTATGAATAGAGCACAAAGGTTGCTGGGGATATTGGTTGCCATTCTGGGAGCTGTTAATTTCTATGTGCGAAGCAAACATTTCACTGTCAATACGGTTCTAATAATGCTTCAGATTCTTTGCTCTGATATCATTGTCATTTATCTTGATGATGTCCTAAGAAAAGGATATGGATTGTTATCTGGTATATCCTTGTTCACTGCCACCAACATCTGTGTAAATATTCTGTGGAAGGCCTTCAGCCCCATGTCCGTCATGTATCCTGAACAAAGCCCTGAATTTGAGGGAGCTGTTATTGCCTGGGTTCATCTTCTGATGACTAGAACGGATAAATTGTCTGCAATGTCTAAAGCCTTTTACCGTCAAAACCTCCCGAATATTATCAATTTTCTAGCCACTTGCTTGTTTGTTCCACTTGCCATATTCTTCCAAGGCTTCTATATTGTACTGCCTGTCAGGACACGGCGTAATTTTCAAGCCTACTGCCACATCAAGCTCTCACATTTCTTGTATGGGCCTGTTGTCTTGCACCGTTTACTGCTCCCACTTCCTTATGTTGCCTCAAAGGTGCTGTACAAGAAATACAGTGGAAACACACTAGTGAATTTGCTTGGCAAGTGGGATGGATTGAACCATTTTGGACAGTCTATCCCTGTTGGAGGGATAGTGTACTACCTAAGGACGCCCCCTATCTTGGCTGATTTGCACAGGGACCCGTTCCATGCATTTATATATGTCGCATTCGTGCTTATTTCATGTGTGTTTATCTCAATGGGTCTTATGGTCTGTGCATCTTCAAAAGGAGTTTTCAACGGGTTTGTTGTGTTAAATATGCAGGAGGAACGAAGACTGAGGCTTGCCCAGCCCGACTCAATACATGCGAACGAAATTCGGCGTCATGTCATGAGGGCAGCTTGTGTTGGTGGTTTCTGTGCCGGTGTACTAATAATTTTCGCAGATCTCATTGGGGTGTTTTGTTCTGGGACTGGAATTATGCTTGCTGTGACTGCTTCATATCCTTATGTTGATGGCAGAGCTAGTGAGGTCGGGTCCTTTGGCTTCTGACTGATCGAGATATCTACTCCTAAATAAAGATGAGATACAGAAAGCGGCTACTTGTAACGAGAGTTAAATCCATGGATATTTATTTATTATGTAGTCTGCAAGAAGCTAATTTTTTTTTCTTTTTACAATGTATATATTTGTTATTTGCTGAAAACCGGTGTTTCAGTGAAACACACTAATCTG]

[+] EMBL CF323850             [TGAATTTCGCCGTCCCCTTGGCGGCGCCTCCTCTCCTTGCGAGTTCGCCCACCGCCTGCCTGCGCCGATCGATCTCCATAGGCGCCGTCTTCCTGCGGCTTCCGCCCGGGTTCTACCTTGGTTAACTATCAGGAAAGATGTCAAATAGGTCAAAGTTCTGGAGATTAGCAGCGCTAGTCCCTGAAGTGCAGTGTCCTGACCAGCCCATCTCTCCCCGTCAAAAATTTAAATACACGGCCATTGTACTTTTCATCTTTGTGACTGCCAGCCAAGTTCTATTGTATGGGATCCAACACCAACCTCGAACCATTGAGCCTGATCCATTACATTGGCTGCATCTGATTCTGGCGTCAAGCCGTAGTACTCTCTTGTCGCACGGGATCGTCGCTATTCTAGTACCTGAGGTTCTGGTGAAGATCTGGGTGTACCTAAAGATCATAACTCTCGATACCAGTGCACCTGAAACTGGTGTTCTTATGAATAGAGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL AK101417             [ GAATTTCGCCGTCCCCTTGGCGGCGCCTCCTCTCCTTGCGAGTTCGCCCACCGCCTGCCTGCGCCGATCGATCTCCATAGGCGCCGTCTTCCTGCGGCTTCCGCCCGGGTTCTACCTTGGTTAACTATCAGGAAAGATGTCAAATAGGTCAAAGTTCTGGAGATTAGCAGCGCTAGTCCCTGAAGTGCAGTGTCCTGACCAGCCCATCTCTCCCCGTCAAAAATTTAAATACACGGCCATTGTACTTTTCATCTTTGTGACTGCCAGCCAAGTTCTATTGTATGGGATCCAACACCAACCTCGAACCATTGAGCCTGATCCATTACATTGGCTGCATCTGATTCTGGCGTCAAGCCGTAGTACTCTCTTGTCGCACGGGATCGTCGCTATTCTAGTACCTGAGGTTCTGGTGAAGATCTGGGTGTACCTAAAGATCATAACTCTCGATACCAGTGCACCTGAAACTGGTGTTCTTATGAATAGAGCACAAAGGTTGCTGGGGATATTGGTTGCCATTCTGGGAGCTGTTAATTTCTATGTGCGAAGCAAACATTTCACTGTCAATACGGTTCTAATAATGCTTCAGATTCTTTGCTCTGATATCATTGTCATTTATCTTGATGATGTCCTAAGAAAAGGATATGGATTGTTATCTGGTATATCCTTGTTCACTGCCACCAACATCTGTGTAAATATTCTGTGGAAGGCCTTCAGCCCCATGTCCGTCATGTATCCTGAACAAAGCCCTGAATTTGAGGGAGCTGTTATTGCCTGGGTTCATCTTCTGATGACTAGAACGGATAAATTGTCTGCAATGTCTAAAGCCTTTTACCGTCAAAACCTCCCGAATATTATCAATTTTCTAGCCACTTGCTTGTTTGTTCCACTTGCCATATTCTTCCAAGGCTTCTATATTGTACTGCCTGTCAGGACACGGCGTAATTTTCAAGCCTACTGCCACATCAAGCTCTCACATTTCTTGTATGGGCCTGTTGTCTTGCACCGTTTACTGCTCCCACTTCCTTATGTTGCCTCAAAGGTGCTGTACAAGAAATACAGTGGAAACACACTAGTGAATTTGCTTGGCAAGTGGGATGGATTGAACCATTTTGGACAGTCTATCCCTGTTGGAGGGATAGTGTACTACCTAAGGACGCCCCCTATCTTGGCTGATTTGCACAGGGACCCGTTCCATGCATTTATATATGTCGCATTCGTGCTTATTTCATGTGTGTTTATCTCAATGGGTCTTATGGTCTGTGCATCTTCAAAAGGAGTTTTCAACGGGTTTGTTGTGTTAAATATGCAGGAGGAACGAAGACTGAGGCTTGCCCAGCCCGACTCAATACATGCGAACGAAATTCGGCGTCATGTCATGAGGGCAGCTTGTGTTGGTGGTTTCTGTGCCGGTGTACTAATAATTTTCGCAGATCTCATTGGGGTGTTTTGTTCTGGGACTGGAATTATGCTTGCTGTGACTGCTTCATATCCTTATGTTGATGGCAGAGCTAGTGAGGTCGGGTCCTTTGGCTTCTGACTGATCGAGATATCTACTCCTAAATAAAGATGAGATACAGAAAGCGGCTACTTGTAACGAGAGTTAAATCCATGGATATTTATTTATTATGTAGTCTGCAAGAAGCTAATTTTTTTTTCTTTTTACAATGTATATATTTGTTATTTGCTGAAAACCGGTGTTTCAGTGAAACACACTAATCTG]


>consensus_1514#0 TGAATTTCGCCGTCCCCTTGGCGGCGCCTCCTCTCCTTGCGAGTTCGCCCACCGCCTGCC TGCGCCGATCGATCTCCATAGGCGCCGTCTTCCTGCGGCTTCCGCCCGGGTTCTACCTTG GTTAACTATCAGGAAAGATGTCAAATAGGTCAAAGTTCTGGAGATTAGCAGCGCTAGTCC CTGAAGTGCAGTGTCCTGACCAGCCCATCTCTCCCCGTCAAAAATTTAAATACACGGCCA TTGTACTTTTCATCTTTGTGACTGCCAGCCAAGTTCTATTGTATGGGATCCAACACCAAC CTCGAACCATTGAGCCTGATCCATTACATTGGCTGCATCTGATTCTGGCGTCAAGCCGTA GTACTCTCTTGTCGCACGGGATCGTCGCTATTCTAGTACCTGAGGTTCTGGTGAAGATCT GGGTGTACCTAAAGATCATAACTCTCGATACCAGTGCACCTGAAACTGGTGTTCTTATGA ATAGAGCACAAAGGTTGCTGGGGATATTGGTTGCCATTCTGGGAGCTGTTAATTTCTATG TGCGAAGCAAACATTTCACTGTCAATACGGTTCTAATAATGCTTCAGATTCTTTGCTCTG ATATCATTGTCATTTATCTTGATGATGTCCTAAGAAAAGGATATGGATTGTTATCTGGTA TATCCTTGTTCACTGCCACCAACATCTGTGTAAATATTCTGTGGAAGGCCTTCAGCCCCA TGTCCGTCATGTATCCTGAACAAAGCCCTGAATTTGAGGGAGCTGTTATTGCCTGGGTTC ATCTTCTGATGACTAGAACGGATAAATTGTCTGCAATGTCTAAAGCCTTTTACCGTCAAA ACCTCCCGAATATTATCAATTTTCTAGCCACTTGCTTGTTTGTTCCACTTGCCATATTCT TCCAAGGCTTCTATATTGTACTGCCTGTCAGGACACGGCGTAATTTTCAAGCCTACTGCC ACATCAAGCTCTCACATTTCTTGTATGGGCCTGTTGTCTTGCACCGTTTACTGCTCCCAC TTCCTTATGTTGCCTCAAAGGTGCTGTACAAGAAATACAGTGGAAACACACTAGTGAATT TGCTTGGCAAGTGGGATGGATTGAACCATTTTGGACAGTCTATCCCTGTTGGAGGGATAG TGTACTACCTAAGGACGCCCCCTATCTTGGCTGATTTGCACAGGGACCCGTTCCATGCAT TTATATATGTCGCATTCGTGCTTATTTCATGTGTGTTTATCTCAATGGGTCTTATGGTCT GTGCATCTTCAAAAGGAGTTTTCAACGGGTTTGTTGTGTTAAATATGCAGGAGGAACGAA GACTGAGGCTTGCCCAGCCCGACTCAATACATGCGAACGAAATTCGGCGTCATGTCATGA GGGCAGCTTGTGTTGGTGGTTTCTGTGCCGGTGTACTAATAATTTTCGCAGATCTCATTG GGGTGTTTTGTTCTGGGACTGGAATTATGCTTGCTGTGACTGCTTCATATCCTTATGTTG ATGGCAGAGCTAGTGAGGTCGGGTCCTTTGGCTTCTGACTGATCGAGATATCTACTCCTA AATAAAGATGAGATACAGAAAGCGGCTACTTGTAACGAGAGTTAAATCCATGGATATTTA TTTATTATGTAGTCTGCAAGAAGCTAATTTTTTTTTCTTTTTACAATGTATATATTTGTT ATTTGCTGAAAACCGGTGTTTCAGTGAAACACACTAATCTG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)