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Oryza sativa
cluster # 15144 cluster # 15144       Sequences # 20       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_15144#0 length = 1248 sequences # 16  
consensus_15144#1 length = 1053 sequences # 4  

consensusID : consensus_15144#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 16
consensus length = 1248
fasta sequence
                              [CGAATTCCCCTTGGACCTGACTGGACTGAAGGAGTAGAAACTCTTCTCCCATTCCATTCGGCATCCGCTTCTCGGTGGGCAACGCGACGGCGGCGGAAAGCCAAGGCCAACGATGCAGCGCCTCTCCCGCTTCGTCCCCTCCTCCTCCAGGAGAGTCACTGACCTAAAGGATGCTCTCTGGAGTGGTTCTTTGACTTTCCAACATGCTCTTTCAACATTTGCAGCAGACGAGAACACATCTGGTAGAAAATTTGCAAGCTACACCGTGTTCAAGGGAAAGGCTGCACTTTCTATGCAACCCATACTGCCAAGCTTCAGCAAACTGGAATCTGGAGGATCTCGTGTGAACAAAAATGGATCGGTGATGTTGACTTTTTTCCCGGCTGTGGGACAAAGGAAATATGATTATTCAAAGAAACAGCTCTTTGCTCTGTCACCTACTGAAGTCGGAAGCTTGATAAGTCTTGGGCCTGCTGAATCTTGTGAATTTTTCCATGATCCCTCCATGAAATCAAGTCATGAAGGCCAAGTGAAAA-AATCGTTGTCAGTCACTCCTCTCGGCAATGACAGTGGATACTTTCTGAATATAACTGTTCTGAACAACTTGCAGAAGACAACTGAGCGACTTTCACTCCCAATCTCAAAAGCTGAGTTTACAGTTATGCGCACAGCATTGAGTTTCGCATTGCCGCACATCTTGGGCTGGGACCAGGCCTTGACTAATCACCAGCCAAGTCCATCACCAGCTAGCAAGCCCAGGGTGGAGCGCCCACA-CCCAGA-TTCAGAGTGGGAAAGGTGAAGCTCCCTTGTAGGCACCAGCAGCATGGAGGGATTTGAACATCATCGCTACCAAAATTTGGATGCTGTTGCACTTTCTCCACGAAATCGAATTAGGAGATATCTATTAGATTCATGGAGCTAAAGATCGAATGTCACAGATTGAGCACACCATGAAGGGTTGTGTTTGTTCAATGCATGTTTGAACTTCACCAGGCCTACTAGTTGCAAAATTCTACTCCAGTTAGCTATGCATTGCGTTTGACACCTTGTGCCTTTTGAATGTGTGACTTATGTTATTTGCAAAATGGTGGAGTCTTACAAAACTACTCAAACGTAGTTGAGTGGTTATGGCTTTAAAAAGCTAAACAAAAAACATATCTGTTTGTTAAGGCTCAAACTTTTTATTCCACTGCATCTTAAACTCACATTCATTTCCTTTTGAATGTGACTTATGTTATTTGCAAAAAA]

[+] EMBL CF295030             [CGAATTCCCCTTGGACCTGACTGGACTGAAGGAGTAGAAACTCTTCTCCCATTCCATTCGGCATCCGCTTCTCGGTGGGCAACGCGACGGCGGCGGAAAGCCAAGGCCAACGATGCAGCGCCTCTCCCGCTTCGTCCCCTCCCCCTCCAGGAGAGTCACTGACCTAAAGGATGCTCTCTGGAGTGGTTCTTTGACTTTCCAACATGCTCTTTCAACATTTGCAGCAGACGAGAACACATCTGGTAGAAAATTTGCAAGCTACACCGTGTTCAAGGGAAAGGCTGCACTTTCTATGCAACCCATACTGCCAAGCTTCAGCAAACTGGAATCTGGAGGATCTCGTGTGAACAAAAATGGATCGGTGATGTTGACTTTTTTCCCGGCTGTGGGACAAAGGAAATATGATTATTCAAAGAAACAGCTCTTTGCTCTGTCACCTACTGAAGTCGGAAGCTTGATAAGTCTTGGGCCTGCTGAATCTTGTGAATTTTTCCATGATCCCTCCATGAAATCAAGTCATGAAGGCCAAGTGAAAA AATCGTTGTCAGTCACTCCTCTCGGCAATGACAGTGGATACTTTCTGAATATAACTGTTCTGAACAACTTGCAGAAGACAACTGAGCGACTTTCACTCCCAATCTCAAAAGCTGAGTTTACAGTTATGCGCACAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CF279071             [                                                CCATTCCATTCGGCATACATTCCTCGGTGGGCAACGCGACGGCGGCGGAAAGCCAAGGCCAACGATGCAGCGCCTCTCCCGCTTCGTCCCCTCCTCCTTCTTTAGAGTCACTGACCTAAAGGATGCTCTCTGGAGTGGTTCTTTGACTTT TTTTTTGCTCTTTCAACATTTGTTGCAGACGAGAACACATCTGG ATAAATTTTGCAAGCTACACCGTGTTCAAGGGAAAGGCTGCACTTTCTATGCAACCCATACTGCCAAGCTTCAGCAAACTGGAATCTGGAGGATCTCGTGTGAACAAAAATGGATCGGAGATGTTGACTTTTTTCCCGGCTGTGGGACAAAGGAAATATGATTATTCAAAGAAACAGCTCTTTGCTCTGTCACCTACTGAAGTCGGAAGCTTGATAAGTCTTGGGCCTGCTGAATCTTGTGAATTTTTCCATGATCCCTCCATGAAATCAAGTCATGAAGGCCAAGTGAAAA AATCGTTGTCAGTCACTCCTCTCGGCAATGACAGTGGATACTTTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CF333998             [                                                CCATTCCATTCGGCATCCGCTTCTCGGTGGGCAACGCGACGGCGGCGGAAAGCCAAGGCCAACGATGCAGCGCCTCTCCCGCTTCGTCCCCTCCTCCTCCAGGAGAGTCACTGACCTAAAGGATGCTCTCTGGAGTGGTTCTTTGACTTTCCGACATGCTCTTTCAACATTTGCAGCAGACGAGAACACATCTGGTAGAAAATTTGCAAGCTACACCGTGTTCAAGGGAAAGGCTGCACTTTCTATGCAACCCATACTGCCAAGCTTCAGCAAACTGGAATCTGGAGGATCTCGTGTGAACAAAAATGGATCGGTGATGTTGACTTTTTTCCCGGCTGTGGGACAAAGGAAATATGATTATTCAAAGAAACAGCTCTTTGCTCTGTCACCTACTGAAGTCGGAAGCTTGATAAGTCTTGGGCCTGCTGAATCTTGTGAATTTTTCCATGATCCCTCCATGAAATCAAGTCATGAAGGCCAAGTGAAAANAATCGTTGTCAGTCACTCCTCTCGGCAATGACAGTGGATACTTTCTGAATATAACTGTTCTGAACAACTTGCAGAAGACAACTGAGCGACTTTCAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL CF280222             [                                                CCATTCCATTCGGCATCCGCTTCTCGGTGGGCAACGCGACGGCGGCGGAAAGCCAAGGCCAACGATGCAGCGCCTCTCCCGCTTCGTCCCCTCCTCCTCCAGGAGAGTCACTGACCTAAAGGATGCTCTCTGGAGTGGTTCTTTGACTTTCCAACATGCTCTTTCAACATTTGCAGCAGACGAGAACACATCTGGTAGAAAATTTGCAAGCTACACCGTGTTCAAGGGAAAGGCTGCACTTTCTATGCAACCCATACTGCCAAGCTTCAGCAAACTGGAATCTGGAGGATCTCGTGTGAACAAAAATGGATCGGTGATGTTGACTTTTTTCCCGGCTGTGGGACAAAGGAAATATGATTATTCAAAGAAACAGCTCTTTGCTCTGTCACCTACTGAAGTCGGAAGCTTGATAAGTCTTGGGCCTGCTGAATCTTGTGAATTTTTCCATGATCCCTCCATGAAATCAAGTCATGAAGGCCAAGTGAAAA AATCGTTGTCAGTCACTCCTCTCGGCAATGACAGTGGATACTTTCTGAATATAACTGTTCTGAACAACTTGCAGAAGACAACTGAGCGACTTTCACTCCCAATCTCAAAAGCTGAGTTTACAGTTATGCGCACAGCATTGAGTTTCGCATTGCCGCACATCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AK099479             [                                                       ATTCGGCATCCGCTTCTCGGTGGGCAACGCGACGGCGGCGGAAAGCCAAGGCCAACGATGCAGCGCCTCTCCCGCTTCGTCCCCTCCTCCTCCAGGAGAGTCACTGACCTAAAGGATGCTCTCTGGAGTGGTTCTTTGACTTTCCAACATGCTCTTTCAACATTTGCAGCAGACGAGAACACATCTGGTAGAAAATTTGCAAGCTACACCGTGTTCAAGGGAAAGGCTGCACTTTCTATGCAACCCATACTGCCAAGCTTCAGCAAACTGGAATCTGGAGGATCTCGTGTGAACAAAAATGGATCGGTGATGTTGACTTTTTTCCCGGCTGTGGGACAAAGGAAATATGATTATTCAAAGAAACAGCTCTTTGCTCTGTCACCTACTGAAGTCGGAAGCTTGATAAGTCTTGGGCCTGCTGAATCTTGTGAATTTTTCCATGATCCCTCCATGAAATCAAGTCATGAAGGCCAAGTGAAAA AATCGTTGTCAGTCACTCCTCTCGGCAATGACAGTGGATACTTTCTGAATATAACTGTTCTGAACAACTTGCAGAAGACAACTGAGCGACTTTCACTCCCAATCTCAAAAGCTGAGTTTACAGTTATGCGCACAGCATTGAGTTTCGCATTGCCGCACATCTTGGGCTGGGACCAGGCCTTGACTAATCACCAGCCAAGTCCATCACCAGCTAGCAAGCCCAGGGTGGAGCGCCCACA CCCAGA TTCAGAGTGGGAAAGGTGAAGCTCCCTTGTAGGCACCAGCAGCATGGAGGGATTTGAACATCATCGCTACCAAAATTTGGATGCTGTTGCACTTTCTCCACGAAATCGAATTAGGAGATATCTATTAGATTCATGGAGCTAAAGATCGAATGTCACAGATTGAGCACACCATGAAGGGTTGTGTTTGTTCAATGCATGTTTGAACTTCACCAGGCCTACTAGTTGCAAAATTCTACTCCAGTTAGCTATGCATTGCGTTTGACACCTTGTGCCTTTTGAATGTGTGACTTATGTTATTTGCAAAATGGTGGAGTCTTACAAAACTACTCAAACGTAGTTGAGTGGTTATGGCTTTAAAAAGCTAAACAAAAAACATATCTGTTTGTTAAGGCTCAAAC                                                                      ]
[+] EMBL CF332157             [                                                          CGGCATCCGCTTCTCGGTGGGCAACGCGACGGCGGCGGAAAGCCAAGGCCAACGATGCAGCGCCTCTCCCGCTTCGTCCCCTCCTCCTCCAGGAGAGTCACTGACCTAAAGGATGCTCTCTGGAGTGGTTCTTTGACTTTCCAACATGCTCTTTCAACATTTGCAGCAGACGAGAACACATCTGGTAGAAAATTTGCAAGCTACACCGTGTTCAAGGGAAAGGCTGCACTTTCTATGCAACCCATACTGCCAAGCTTCAGCAAACTGGAATCTGGAGGATCTCGTGTGAACAAAAATGGATCGGTGATGTTGACTTTTTTCCCGGCTGTGGGACAAAGGAAATATGATTATTCAAAGAAACAGCTCTTTGCTCTGTCACCTACTGAAGTCGGAAGCTTGATAAGTCTTGGGCCTGCTGAATCTTGTGAATTTTTCCATGATCCCTCCATGAAATCAAGTCATGAAGGCCAAGTGAAAA AATCGTTGTCAGTCACTCCTCTCGGCAATGACAGTGGATACTTTCTG ATATAACTGTTCTGAAC ACTTGCAGAAGA AACTGAGCGACTTTCACTCCCAATCTCAAAAGCTGAGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL CF321619             [                                                          CGGCATCCGCTTCTCGGTGGGCAACGCGACGGCGGCGGAAAGCCAAGGCCAACGATGCAGCGCCTCTCCCGCTTCGTCCCCTCCTCCTCCAGGAGAGTCACTGACCTAAAGGATGCTCTCTGGAGTGGTTCTTTGACTTTCCAACATGCTCTTTCAACATTTGCAGCAGACGAGAACACATCTGGTAGAAAATTTGCAAGCTACACCGTGTTCAAGGGAAAGGCTGCACTTTCTATGCAACCCATACTGCCAAGCTTCAGCAAACTGGAATCTGGAGGATCTCGTGTGAACAAAAATGGATCGGTGATGTTGACTTTTTTCCCGGCTGTGGGACAAAGGAAATATGATTATTCAAAGAAACAGCTCTTTGCTCTGTCACCTACTGAAGTCGGAAGCTTGATAAGTCTTGGGCCTGCTGAATCTTGTGAATTTTTCCATGATCCCTCCATGAAATCAAGTCATGAAGGCCAAGTGAAAA AATCGTTGTCAGTCACTCCTCTCGGCAATGACAGTGGATACTTTCTGAATATAACTGTTCTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CF328462             [                                                               TCCGCTTCTCGGTGGGCAACGCGACGGCGGCGGAAAGCCAAGGCCAACGATGCAGCGCCCCTCCCGCTTCGTCCCCTCCTCCTCCAGGAGAGTCACTGACCTAAAGGATGCTCTCTGGAGTGGTTCTTTGACTTTCCAACATGCTCTTTCAACATTTGCAGCAGACGAGAACACATCTGGTAGAAAATTTGCAAGCTACACCGTGTTCAAGGGAAAGGCTGCACTTTCTATGCAACCCATACTGCCAAGCTTCAGCAAACTGTAATCTGGAGGATCTCGTGTGAACAAAAATGGATCGGTGATGTTGACTTTTTTCCCGGCTGTGGGACAAAGGAAATATGATTATTCAAAGAAACAGCTCTTTGCTCTGTCACCTACTGAAGTCGGAAGCTTGATAAGTCTTGGGCCTGCTGAATCTTGTGAATTTTTCCATGATCCCTCCATGAAATCAAGTCATGAAGGCCAAGTGAAAA AATCGTTGTCAGTCACTCCTCTCGGCAATGACAGTGGATACTTTCTGAATATAACTGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL AK061569             [                                                                CCGCTTCTCGGTGGGCAACGCGACGGCGGCGGAAAGCCAAGGCCAACGATGCAGCGCCTCTCCCGCTTCGTCCCCTCCTCCTCCAGGAGAGTCACTGACCTAAAGGATGCTCTCTGGAGTGGTTCTTTGACTTTCCAACATGCTCTTTCAACATTTGCAGCAGACGAGAACACATCTGGTAGAAAATTTGCAAGCTACACCGTGTTCAAGGGAAAGGCTGCACTTTCTATGCAACCCATACTGCCAAGCTTCAGCAAACTGGAATCTGGAGGATCTCGTGTGAACAAAAATGGATCGGTGATGTTGACTTTTTTCCCGGCTGTGGGACAAAGGAAATATGATTATTCAAAGAAACAGCTCTTTGCTCTGTCACCTACTGAAGTCGGAAGCTTGATAAGTCTTGGGCCTGCTGAATCTTGTGAATTTTTCCATGATCCCTCCATGAAATCAAGTCATGAAGGCCAAGTGAAAA AATCGTTGTCAGTCACTCCTCTCGGCAATGACAGTGGATACTTTCTGAATATAACTGTTCTGAACAACTTGCAGAAGACAACTGAGCGACTTTCACTCCCAATCTCAAAAGCTGAGTTTACAGTTATGCGCACAGCATTGAGTTTCGCATTGCCGCACATCTTGGGCTGGGACCAGGCCTTGACTAATCACCAGCCAAGTCCATCACCAGCTAGCAAGCCCAGGGTGGAGCGCCCACA CCCAGA TTCAGAGTGGGAAAGGTGAAGCTCCCTTGTAGGCACCAGCAGCATGGAGGGATTTGAACATCATCGCTACCAAAATTTGGATGCTGTTGCACTTTCTCCACGAAATCGAATTAGGAGATATCTATTAGATTCATGGAGCTAAAGATCGAATGTCACAGATTGAGCACACCATGAAGGGTTGTGTTTGTTCAATGCATGTTTGAACTTCACCAGGCCTACTAGTTGCAAAATTCTACTCCAGTTAGCTATGCATTGCGTTTGACACCTTGTGCCTTTTGAATGTGTGACTTATGTTATTTGCAAAATGGTGGAGTCTTACAAAACTACTCAAACGTAGTTGAGTGGTTATGGCTTTAAAAAGCTAAACAAAAAACATATCTGTTTGTTAAGGCTCAAACTTTTTATTCCACTGCA                                                      ]
[+] EMBL AK104768             [                                                                CCGCTTCTCGGTGGGCAACGCGACGGCGGCGGAAAGCCAAGGCCAACGATGCAGCGCCTCTCCCGCTTCGTCCCCTCCTCCTCCAGGAGAGTCACTGACCTAAAGGATGCTCTCTGGAGTGGTTCTTTGACTTTCCAACATGCTCTTTCAACATTTGCAGCAGACGAGAACACATCTGGTAGAAAATTTGCAAGCTACACCGTGTTCAAGGGAAAGGCTGCACTTTCTATGCAACCCATACTGCCAAGCTTCAGCAAACTGGAATCTGGAGGATCTCGTGTGAACAAAAATGGATCGGTGATGTTGACTTTTTTCCCGGCTGTGGGACAAAGGAAATATGATTATTCAAAGAAACAGCTCTTTGCTCTGTCACCTACTGAAGTCGGAAGCTTGATAAGTCTTGGGCCTGCTGAATCTTGTGAATTTTTCCATGATCCCTCCATGAAATCAAGTCATGAAGGCCAAGTGAAAA AATCGTTGTCAGTCACTCCTCTCGGCAATGACAGTGGATACTTTCTGAATATAACTGTTCTGAACAACTTGCAGAAGACAACTGAGCGACTTTCACTCCCAATCTCAAAAGCTGAGTTTACAGTTATGCGCACAGCATTGAGTTTCGCATTGCCGCACATCTTGGGCTGGGACCAGGCCTTGACTAATCACCAGCCAAGTCCATCACCAGCTAGCAAGCCCAGGGTGGAGCGCCCACA CCCAGA TTCAGAGTGGGAAAGGTGAAGCTCCCTTGTAGGCACCAGCAGCATGGAGGGATTTGAACATCATCGCTACCAAAATTTGGATGCTGTTGCACTTTCTCCACGAAATCGAATTAGGAGATATCTATTAGATTCATGGAGCTAAAGATCGAATGTCACAGATTGAGCACACCATGAAGGGTTGTGTTTGTTCAATGCATGTTTGAACTTCACCAGGCCTACTAGTTGCAAAATTCTACTCCAGTTAGCTATGCATTGCGTTTGACACCTTGTGCCTTTTGAATGTGTGACTTATGTTATTTGCAAAATGGTGGAGTCTTACAAAACTACTCAAACGTAGTTGAGTGGTTATGGCTTTAAAAAGCTAAACAAAAAACATATCTGTTTGTTAAGGCTCAAACTTTTTATTCCACTGCA                                                      ]
[-] EMBL CF328461             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GTCATGAAGGCCAAGTGAAAA AATCGTTGTCAGTCACTCCTCTCGGCAATGACAGTGGATACTTTCTGAATATAACTGTTCTGAACAACTAGCAGAAGACAACTGAGCGACTTTCACTCCCAATCTCAAAAGCTGAGTTTACAGTTATGCGCACAGCATTGAGTTTCGCATTGCCGCACATCTTGGGCTGGGACCAGGCCTTGACTAATCACCAGCCAAGTCCATCACCAGCTAGCAAGCCCAGGGTGGAGCGCCCACA CCCAGA TTCAGAGTGGGAAAGGTGAAGCTCCCTTGTAGGCACCAGCAGCATGGAGGGATTTGAACATCATCGCTACCAAAATTTGGATGCTGTTGCACTTTCTCCACGAAATCGAATTAGGAGATATCTATTAGATTCATGGAGCTAAAGATCGAATGTCACAGATTGAGCACACCATGAAGGGTTGTGTTTGTTCAATGCATGTTTGAACTTCACCAGGCCTACTAGTTGCAAAATTCTACTCCAGTTAGCTAaaaaa                                                                                                                                                                                                                       ]
[+] EMBL AA751552             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   acGAGAA TGAGCGACTTTCACTCCCAATCTCAAAAGCTGAGTTTACAGTTATGCGCACAGCATTGAGTTTCGCATTGCCGCACATCTTGGGCTGGGACCAGGCCTTGACTAATCACCAGCCAAGTCCATCACCAGCTAGCAAGCCCAGGGTGGAGCGCCCACA CCCAGA TTCAGAGTGGGAAAGGTGAAGCTCCCTTGTAGGCACCAGCAGCATGGAGGGATTTGAACATCATCGCTACCAAAATTTGGATGCTGTTGCACTTTCTCCACGAAATCGAATTAGGAGATATCTATTAGATTCATGGAGCTAAAGATCGAATGTCACAGATTGAGCACACCATGAAGGGTTGTGTTTGTTCAATGCATGTTTGAACTTCACCAGGCCTACTAGTTGCAAAATTCTACTCCAGTTAGCTATGCATTGCGTTTGACACCTTGTGCCTTTTGAATGTGTGACTTATGTTATTTGCAAAATGGTGGAGTCTTACAAAACTACTCAAACGTAGTTGAGTGGTTATGGCTTTAAAAAGCTAAACAAAAAACATATCTGTTTGTTAAGGCTCAAACTTTTTATTCCACTGCATCTTAAACTCA                                           ]
[-] EMBL CF328880             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GTTTACAGTTATGCGCACAGCATTGAGTTTCGCATTGCCGCACATCTTGGGCTGGGACCAGGCCTTGACTAATCACCAGCCAAGTCCATCACCAGCTAGCAAGCCCAGGGTGGAGCGCCCACA CCCAGATTTCAGAGTGGGAAAGGTGAAGCTCCCTTGTAGGCACCAGCAGCATGGAGGGATTTGAACATCATCGCTACCAAAATTTGGATGCTGTTGCACTTTCTCCACGAAATCGAATTAGGAGATATCTATTAGATTCATGGAGCTAAAGATCGAATGTCACAGATTGAGCACACCATGAAGGGTTGTGTTTGTTCAATGCATGTTTGAACTTCACCAGGCCTACTAGTTGCAAAATTCTACTCCAGTTAGCTATGCATTGCGTTTGACACCTTGTGCCTTTTGAATGTGTGACTTATGTTATTTGCAAAATGGTGGAGTCTTACAAAACTACTCAAACGTAGTTGAGTGGTTATGGCTTTAAAAAGCTAAACAAAAAACATATCTGTTTGTTAAGGCTCAAAaaaa                                                                   ]
[-] EMBL CF332158             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AGTCCATCACCAGCTAGCAAGCCCAGGGTGGAGCGCCCACA CCCAGA TTCAGAGTGGGAAAGGTGAAGCTCCCTTGTAGGCACCAGCAGCATGGAGGGATTTGAACATCATCGCTACCAAAATTTGGATGCTGTTGCACTTTCTCCACGAAATCGAATTAGGAGATATCTATTAGATTCATGGAGCTAAAGATCGAATGTCACAGATTGAGCACACCATGAAGGGTTGTGTTTGTTCAATGCATGTTTGAACTTCACCAGGCCTACTAGTTGCAAAATTCTACTCCAGTTAGCTATGCATTGCGTTTGACACCTTGTGCCTTTTGAATGTGTGACTTATGTTATTTGCAAAATGGTGAAGTCTTACAAAACTACTCAAACGTAGTTGAGTGGTTATGGCTTTAAAAAGCTAAACAAAAAACATATCTGTTTGTTAAGGCTCAAACTTTTTATTCCACTGCATCTTAAACTCACATTCATTTCCTTTTGAATGTGACTTATGTTATTTGCAAAAAA]
[-] EMBL CF279070             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          TGGAGCGCCCACACCCCAGA TTCAGAGTGGGAAGGGTGAAGCTCCCTTGTAGGCACCAGCAGCATGGAGGGATTTGAACATCATCGCTACCAAAATTTGGATGCTGTTGCACTTTCTCCACGAAATCGAATTAGGAGATATCTATTAGATTCATGGAGCTAAAGATCGAATGTCACAGATTGAGCACACCATGAAGGGTTGTGTTTGTTCAATGCATGTTTGAACTTCACCAGGCCTACTAGTTGCAAAATTCTACTCCAGTTAGCTATGCATTGCGTTTGACACCTTGTGCCTTTTGAATGTGTGACTTATGTTATTTGCAAAATGGTGGAGTCTTACAAAACTACTCAAACGTAGTTGAGTGGTTATGGCTTTAAAAAGCTAAACAAAAAACATATCTGTTTGTTAAGGCTCAAACTTTTTATTCCACTGCATCTTAAACTCACATTCATTTCCTTTTGAATGTGACTTAcaaaaa          ]
[-] EMBL CF281821             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AGAGTGGGAAAGGTGAAGCTCCCTTGTAGGCACCAGCAGCATGGAGGGATTTGAACATCATCGCTACCAAAATTTGGATGCTGTTGCACTTTCTCCACGAAATCGAATTAGGAGATATCTATTAGATTCATGGAGCTAAAGATCGAATGTCACAGATTGAGCACACCATGAAGGGTTGTGTTTGTTCAATGCATGTTTGAACTTCACCAGGCCTACTAGTTGCAAAATTGCACTCCAGTTAGCTATGCATTGCGTTTGACACCTTGTGCCTTTTGAATGTGTGACTTATGTTATTTGCAAAATGGTGGAGTCTTACAAAACTACTCAAACGTAGTTGAGTGGTTATGGCTTTAAAAAGCTAAACAAAAAACATATCTGTTTGTTAAGGCTCAAACTTTTTATTCCAaaaaaaaaa                                                  ]


>consensus_15144#0 CGAATTCCCCTTGGACCTGACTGGACTGAAGGAGTAGAAACTCTTCTCCCATTCCATTCG GCATCCGCTTCTCGGTGGGCAACGCGACGGCGGCGGAAAGCCAAGGCCAACGATGCAGCG CCTCTCCCGCTTCGTCCCCTCCTCCTCCAGGAGAGTCACTGACCTAAAGGATGCTCTCTG GAGTGGTTCTTTGACTTTCCAACATGCTCTTTCAACATTTGCAGCAGACGAGAACACATC TGGTAGAAAATTTGCAAGCTACACCGTGTTCAAGGGAAAGGCTGCACTTTCTATGCAACC CATACTGCCAAGCTTCAGCAAACTGGAATCTGGAGGATCTCGTGTGAACAAAAATGGATC GGTGATGTTGACTTTTTTCCCGGCTGTGGGACAAAGGAAATATGATTATTCAAAGAAACA GCTCTTTGCTCTGTCACCTACTGAAGTCGGAAGCTTGATAAGTCTTGGGCCTGCTGAATC TTGTGAATTTTTCCATGATCCCTCCATGAAATCAAGTCATGAAGGCCAAGTGAAAAAATC GTTGTCAGTCACTCCTCTCGGCAATGACAGTGGATACTTTCTGAATATAACTGTTCTGAA CAACTTGCAGAAGACAACTGAGCGACTTTCACTCCCAATCTCAAAAGCTGAGTTTACAGT TATGCGCACAGCATTGAGTTTCGCATTGCCGCACATCTTGGGCTGGGACCAGGCCTTGAC TAATCACCAGCCAAGTCCATCACCAGCTAGCAAGCCCAGGGTGGAGCGCCCACACCCAGA TTCAGAGTGGGAAAGGTGAAGCTCCCTTGTAGGCACCAGCAGCATGGAGGGATTTGAACA TCATCGCTACCAAAATTTGGATGCTGTTGCACTTTCTCCACGAAATCGAATTAGGAGATA TCTATTAGATTCATGGAGCTAAAGATCGAATGTCACAGATTGAGCACACCATGAAGGGTT GTGTTTGTTCAATGCATGTTTGAACTTCACCAGGCCTACTAGTTGCAAAATTCTACTCCA GTTAGCTATGCATTGCGTTTGACACCTTGTGCCTTTTGAATGTGTGACTTATGTTATTTG CAAAATGGTGGAGTCTTACAAAACTACTCAAACGTAGTTGAGTGGTTATGGCTTTAAAAA GCTAAACAAAAAACATATCTGTTTGTTAAGGCTCAAACTTTTTATTCCACTGCATCTTAA ACTCACATTCATTTCCTTTTGAATGTGACTTATGTTATTTGCAAAAAA



consensusID : consensus_15144#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1053
fasta sequence
                              [TAGAAAATTTTTTCGGCATCCGCTTCTCGGTGGGCAACGCGACGGCGGCGGAAAGCCAAGGCCAACGATGCAGCGCCTCTCCCGCTTCGTCCCCTCCTCCTCCAGGAGAGTCACTGACCTAAAGGATGCTCTCTGGAGTGGTTCTTTGACTTTCCAACATGCTCTTTCAACATTTGCAGCAGACGAGAACACATCTGGTAGAAAATTTGCAAGCTACACCGTGTTCAAGGGAAAGGCTGCACTTTCTATGCAACCCATACTGCCAAGCTTCAGCAAACTGGAATCTGGAGGATCTCGTGTGAACAAAAATGGATCGGTGATGTTGACTTTTTTCCCGGCTGTGGGACAAAGGAAATATGATTATTCAAAGAAACAGCTCTTTGCTCTGTCACCAACTGAAGTCGGAAGCTTGATAAGTCTTGGGCCTGCTGAATCTTGTGAATTTTTCCATGATCCCTCCATGAAATCAAGTCATGAAGGCCAAGTGAAAAAATCGTTGTCAGTCACTCCTCTCGGCAATGACAGTGGATACTTTCTGAATATAACTGTTCTGAACAACTTGCAGAAGACAACTGAGCGACTTTCACTCCCAATCTCAAAAGCTGAGTTTACAGTTATGCGCACAGCATTGAGTTTCGCATTGCCGCACATCTTGGGCTGGGACCAGGCCTTGATTAATCACCAGCCAAGTCCATCACCAGCTAGCAAGCCCAGGGTGGAGCGCCCACACCCAGATTCAGAGTGGGAAAGGTGAAGCTCCCTTGTAGGCACCAGCAGCATGGAGGGATTTGAACATCATCGCTACCAAAATTTGGATGCTGTTGCACTTTCTCCACGAAATCGAATTAGGAGATATCTATTAGATTCATGGAGCTAAAGATCGAATGTCACAGATTGAGCACCCCATGAAGGGTTGTGTTTGTTCAATGCATGTTTGAACTTCAAAAAACCTACTAGTTGCAAAATTCTACTCCAGTTAGCTATGCATTGCGTTTGACACCTTGTGCCTTTTGAATGTGTGACTTATGTTATTTGCAAAAAAAAAAAAAAAAA]

[+] EMBL CF294979             [TAGAAAATTTTTTCGGCATCCGCTTCTCGGTGGGCAACGCGACGGCGGCGGAAAGCCAAGGCCAACGATGCAGCGCCTCTCCCGCTTCGTCCCCTCCTCCTCCAGGAGAGTCACTGACCTAAAGGATGCTCTCTGGAGTGGTTCTTTGACTTTCCAACATGCTCTTTCAACATTTGCAGCAGACGAGAACACATCTGGTAGAAAATTTGCAAGCTACACCGTGTTCAAGGGAAAGGCTGCACTTTCTATGCAACCCATACTGCCAAGCTTCAGCAAACTGGAATCTGGAGGATCTCGTGTGAACAAAAATGGATCGGTGATGTTGACTTTTTTCCCGGCTGTGGGACAAAGGAAATATGATTATTCAAAGAAACAGCTCTTTGCTCTGTCACCAACTGAAGTCGGAAGCTTGATAAGTCTTGGGCCTGCTGAATCTTGTGAATTTTTCCATGATCCCTCCATGAAATCAAGTCATGAAGGCCAAGTGAAAAAATCGTTGTCAGTCACTCCTCTCGGCAATGACAGTGGATACTTTCTGAATATAACTGTTCTGAACAACTTGCAGAAGACAACTGAGCGACTTTCACTCCCAATCTCAAAAGCTGAGTTTACAGTTATGCGCACAGCATTGAGTTTCGCATTGCCGCACATCTTGGGCTGGGACCAGGCCTTGACTAATCACCAGCCAAGTCC                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CF294978             [                                                                                                                                                                                                                                                                                                                                                                                                                         TTGATAAGTCTTGGGCCTGCTGAATCTTGTGAATTTTTCCATGATCCCTCCATGAAATCAAGTCATGAAGGCCAAGTGAAAAAATCGTTGTCAGTCACTCCTCTCGGCAATGACAGTGGATACTTTCTGAATATAACTGTTCTGAACAACTTGCAGAAGACAACTGAGCGACTTTCACTCCCAATCTCAAAAGCTGAGTTTACAGTTATGCGCACAGCATTGAGTTTCGCATTGCCGCACATCTTGGGCTGGGACCAGGCCTTGATTAATCACCAGCCAAGTCCATCACCAGCTAGCAAGCCCAGGGTGGAGCGCCCACACCCAGATTCAGAGTGGGAAAGGTGAAGCTCCCTTGTAGGCACCAGCAGCATGGAGGGATTTGAACATCATCGCTACCAAAATTTGGATGCTGTTGCACTTTCTCCACGAAATCGAATTAGGAGATATCTATTAGATTCATGGAGCTAAAGATCGAATGTCACAGATTGAGCACCCCATGAAGGGTTGTGTTTGTTCAATGCATGTTTGAACTTCAAAAAA                                                                                                        ]
[-] EMBL CF321620             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GTCATGAAGGCCAAGTGAAAAAATCGTTGTCAGTCACTCCTCTCGGCAATGACAGTGGATACTTTCTGAATATAACTGTTCTGAACAACTTGCAGAAGACAATTGAGCGACTTTCACTCCCAATCTCAAAAGCTGAGTTTACAGTTATGCGCACAGCATTGAGTTTCGCATTGCCGCACATCTTGGGCTGGGACCAGGCCTTGATTAATCACCAGCCAAGTCCATCACCAGCTAGCAAGCCCAGGGTGGAGCGCCCACACCCAGATTCAGAGTGGGAAAGGTGAAGCTCCCTTGTAGGCACCAGCAGCATGGAGGGATTTGAACATCATCGCTACCAAAATTTGGATGCTGTTGCACTTTCTCCACGAAATCGAATTAGGAGATATCTATTAGATTCATGGAGCTAAAGATCGAATGTCACAGATTGAGCACCCCATGAAGGGTTGTGTTTGTTCAATGCATGTTTGAACTTCACCAGGCCTACTAGTTGCAAAATTCTACTCCAGTTAGCTATGCATTGCGTTTGACACCTTGTGCCTTTTGAATGTGTGACTTATGTTATTTGCAAAAAAAAAAAAAAAAA]
[-] EMBL CF280223             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GCCCACACCCAGATTCAGAGTGGGAAAGGTGAAGCTCCCTTGTAGGCACCAGCAGCATGaa                                                                                                                                                                                                                                                                              ]


>consensus_15144#1 TAGAAAATTTTTTCGGCATCCGCTTCTCGGTGGGCAACGCGACGGCGGCGGAAAGCCAAG GCCAACGATGCAGCGCCTCTCCCGCTTCGTCCCCTCCTCCTCCAGGAGAGTCACTGACCT AAAGGATGCTCTCTGGAGTGGTTCTTTGACTTTCCAACATGCTCTTTCAACATTTGCAGC AGACGAGAACACATCTGGTAGAAAATTTGCAAGCTACACCGTGTTCAAGGGAAAGGCTGC ACTTTCTATGCAACCCATACTGCCAAGCTTCAGCAAACTGGAATCTGGAGGATCTCGTGT GAACAAAAATGGATCGGTGATGTTGACTTTTTTCCCGGCTGTGGGACAAAGGAAATATGA TTATTCAAAGAAACAGCTCTTTGCTCTGTCACCAACTGAAGTCGGAAGCTTGATAAGTCT TGGGCCTGCTGAATCTTGTGAATTTTTCCATGATCCCTCCATGAAATCAAGTCATGAAGG CCAAGTGAAAAAATCGTTGTCAGTCACTCCTCTCGGCAATGACAGTGGATACTTTCTGAA TATAACTGTTCTGAACAACTTGCAGAAGACAACTGAGCGACTTTCACTCCCAATCTCAAA AGCTGAGTTTACAGTTATGCGCACAGCATTGAGTTTCGCATTGCCGCACATCTTGGGCTG GGACCAGGCCTTGATTAATCACCAGCCAAGTCCATCACCAGCTAGCAAGCCCAGGGTGGA GCGCCCACACCCAGATTCAGAGTGGGAAAGGTGAAGCTCCCTTGTAGGCACCAGCAGCAT GGAGGGATTTGAACATCATCGCTACCAAAATTTGGATGCTGTTGCACTTTCTCCACGAAA TCGAATTAGGAGATATCTATTAGATTCATGGAGCTAAAGATCGAATGTCACAGATTGAGC ACCCCATGAAGGGTTGTGTTTGTTCAATGCATGTTTGAACTTCAAAAAACCTACTAGTTG CAAAATTCTACTCCAGTTAGCTATGCATTGCGTTTGACACCTTGTGCCTTTTGAATGTGT GACTTATGTTATTTGCAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15144#0      CGAATTCCCCTTGGACCTGACTGGACTGAAGGAGTAGAAACTCTTCTCCCATTCCATTCG 60
consensus_15144#1      ----------------------------------TAGAAAATTTT-----------TTCG 15
                                                         ****** * **           ****

consensus_15144#0      GCATCCGCTTCTCGGTGGGCAACGCGACGGCGGCGGAAAGCCAAGGCCAACGATGCAGCG 120
consensus_15144#1      GCATCCGCTTCTCGGTGGGCAACGCGACGGCGGCGGAAAGCCAAGGCCAACGATGCAGCG 75
                       ************************************************************

consensus_15144#0      CCTCTCCCGCTTCGTCCCCTCCTCCTCCAGGAGAGTCACTGACCTAAAGGATGCTCTCTG 180
consensus_15144#1      CCTCTCCCGCTTCGTCCCCTCCTCCTCCAGGAGAGTCACTGACCTAAAGGATGCTCTCTG 135
                       ************************************************************

consensus_15144#0      GAGTGGTTCTTTGACTTTCCAACATGCTCTTTCAACATTTGCAGCAGACGAGAACACATC 240
consensus_15144#1      GAGTGGTTCTTTGACTTTCCAACATGCTCTTTCAACATTTGCAGCAGACGAGAACACATC 195
                       ************************************************************

consensus_15144#0      TGGTAGAAAATTTGCAAGCTACACCGTGTTCAAGGGAAAGGCTGCACTTTCTATGCAACC 300
consensus_15144#1      TGGTAGAAAATTTGCAAGCTACACCGTGTTCAAGGGAAAGGCTGCACTTTCTATGCAACC 255
                       ************************************************************

consensus_15144#0      CATACTGCCAAGCTTCAGCAAACTGGAATCTGGAGGATCTCGTGTGAACAAAAATGGATC 360
consensus_15144#1      CATACTGCCAAGCTTCAGCAAACTGGAATCTGGAGGATCTCGTGTGAACAAAAATGGATC 315
                       ************************************************************

consensus_15144#0      GGTGATGTTGACTTTTTTCCCGGCTGTGGGACAAAGGAAATATGATTATTCAAAGAAACA 420
consensus_15144#1      GGTGATGTTGACTTTTTTCCCGGCTGTGGGACAAAGGAAATATGATTATTCAAAGAAACA 375
                       ************************************************************

consensus_15144#0      GCTCTTTGCTCTGTCACCTACTGAAGTCGGAAGCTTGATAAGTCTTGGGCCTGCTGAATC 480
consensus_15144#1      GCTCTTTGCTCTGTCACCAACTGAAGTCGGAAGCTTGATAAGTCTTGGGCCTGCTGAATC 435
                       ****************** *****************************************

consensus_15144#0      TTGTGAATTTTTCCATGATCCCTCCATGAAATCAAGTCATGAAGGCCAAGTGAAAAAATC 540
consensus_15144#1      TTGTGAATTTTTCCATGATCCCTCCATGAAATCAAGTCATGAAGGCCAAGTGAAAAAATC 495
                       ************************************************************

consensus_15144#0      GTTGTCAGTCACTCCTCTCGGCAATGACAGTGGATACTTTCTGAATATAACTGTTCTGAA 600
consensus_15144#1      GTTGTCAGTCACTCCTCTCGGCAATGACAGTGGATACTTTCTGAATATAACTGTTCTGAA 555
                       ************************************************************

consensus_15144#0      CAACTTGCAGAAGACAACTGAGCGACTTTCACTCCCAATCTCAAAAGCTGAGTTTACAGT 660
consensus_15144#1      CAACTTGCAGAAGACAACTGAGCGACTTTCACTCCCAATCTCAAAAGCTGAGTTTACAGT 615
                       ************************************************************

consensus_15144#0      TATGCGCACAGCATTGAGTTTCGCATTGCCGCACATCTTGGGCTGGGACCAGGCCTTGAC 720
consensus_15144#1      TATGCGCACAGCATTGAGTTTCGCATTGCCGCACATCTTGGGCTGGGACCAGGCCTTGAT 675
                       *********************************************************** 

consensus_15144#0      TAATCACCAGCCAAGTCCATCACCAGCTAGCAAGCCCAGGGTGGAGCGCCCACACCCAGA 780
consensus_15144#1      TAATCACCAGCCAAGTCCATCACCAGCTAGCAAGCCCAGGGTGGAGCGCCCACACCCAGA 735
                       ************************************************************

consensus_15144#0      TTCAGAGTGGGAAAGGTGAAGCTCCCTTGTAGGCACCAGCAGCATGGAGGGATTTGAACA 840
consensus_15144#1      TTCAGAGTGGGAAAGGTGAAGCTCCCTTGTAGGCACCAGCAGCATGGAGGGATTTGAACA 795
                       ************************************************************

consensus_15144#0      TCATCGCTACCAAAATTTGGATGCTGTTGCACTTTCTCCACGAAATCGAATTAGGAGATA 900
consensus_15144#1      TCATCGCTACCAAAATTTGGATGCTGTTGCACTTTCTCCACGAAATCGAATTAGGAGATA 855
                       ************************************************************

consensus_15144#0      TCTATTAGATTCATGGAGCTAAAGATCGAATGTCACAGATTGAGCACACCATGAAGGGTT 960
consensus_15144#1      TCTATTAGATTCATGGAGCTAAAGATCGAATGTCACAGATTGAGCACCCCATGAAGGGTT 915
                       *********************************************** ************

consensus_15144#0      GTGTTTGTTCAATGCATGTTTGAACTTCACCAGGCCTACTAGTTGCAAAATTCTACTCCA 1020
consensus_15144#1      GTGTTTGTTCAATGCATGTTTGAACTTCAAAAAACCTACTAGTTGCAAAATTCTACTCCA 975
                       *****************************  *  **************************

consensus_15144#0      GTTAGCTATGCATTGCGTTTGACACCTTGTGCCTTTTGAATGTGTGACTTATGTTATTTG 1080
consensus_15144#1      GTTAGCTATGCATTGCGTTTGACACCTTGTGCCTTTTGAATGTGTGACTTATGTTATTTG 1035
                       ************************************************************

consensus_15144#0      CAAAATGGTGGAGTCTTACAAAACTACTCAAACGTAGTTGAGTGGTTATGGCTTTAAAAA 1140
consensus_15144#1      CAAAAAAAAAAA-----AAAAAA------------------------------------- 1053
                       *****      *     * ****                                     

consensus_15144#0      GCTAAACAAAAAACATATCTGTTTGTTAAGGCTCAAACTTTTTATTCCACTGCATCTTAA 1200
consensus_15144#1      ------------------------------------------------------------
                                                                                   

consensus_15144#0      ACTCACATTCATTTCCTTTTGAATGTGACTTATGTTATTTGCAAAAAA 1248
consensus_15144#1      ------------------------------------------------
                                                                       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)