cluster # 15146

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Oryza sativa
cluster # 15146 cluster # 15146 Sequences # 20 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_15146#0 length = 1469 sequences # 12

consensus_15146#1 length = 1230 sequences # 8

consensusID : consensus_15146#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 1469
fasta sequence

                              [GCTAGCTCTTTGTAGCTAGCTAGTCCTCCTGCTACCTAGGGGGGCGACGCCGCCGGACGGGGAGGAGGCCATGG-CGTTCCACGGTCACCTCCCGCACGAGATGACCATGCAGGCGCTCGGCGCGGACGACGCGGC-GGTGGCGGCGGCGGCGGCGGCGGGTGGGGTCGGGGCAGGCGGGGCGCCGGCGTGGATGAGGTACAACGACGGGAGCTTCCTGCACCTGCAGACCACGTCGGACTCGTCGGCGTCGCCGTCTGGCGCTGCGGCTGCGGCGGCGGCTGCGGCGGCGGCGGCGGCGGCCGGGGTGCAGCAGTGGATGGGTGGAGGCGGCGGCGGCGAGGACGCGGTGGCGGCCGCGATGGGCGGCGGCGGCGAGGCGGACGCGGCGCGGTGC-AAGGCGGAGATACTGGCGCACCCGCTGTACGAGCAGCTGCTGTCGGCGCACGTGGCGTGCCTCCG-CATCGCCACCCCGGTCGACCAGCTCCCCCGCATCGACGCGCAGCTCGCGCAGTCGCAGGGCGTC-GTCGCCAAGTACTCCGCCCTCGCCGCCG-CCGCCGCCGGGGACGACGGCCGCGAGCTCGACCAGTTCATGACGCACTACGTCTTGCTATTATGTTCGTTTAAAGAGCAGCTACAGCAGCATGTCCGTGTTCATGCCATGGAAGCAGTAATGGCATGCTGGGAACTTGAACAAAACCTTCAGAGTTTGACAGGTGCCTCGCCCGGTGAAGGCACGGGAGCAACCATGTCAGATGGTG-AAGATGATCAGG-CAGATAGCGAGG-CAA-ACATGTATGATCCAAGCTTGGATGGAGCGGATAACATGGGTTTCGGCCTTCCCACAGAAAGCGAGCGATCCCTAATGGAGCGTGTCCGTCAAGAGCTAAAGCATGAACTAAAGAAGGGTTACAAAGAGAAGGTGATTGA-ATAAGAGAAGAAATTCTTCGGAAG-GGAGAG-GGGGAAG-TAC--GGAGAAGCGACTTCTACGTTAAAAGCTTGGTGGCAGTCTCATGCAAAGTGGCCATATCCAACAGAGGAAGACAAGGCACGGCTAGTCCAAGAAACAGGGCTACAGCTAAAGCAGATCAACAACTGGTTCATCAACCAAAGGAAAAGAAACTGGCACAGTAACCCATCTTCCTCCACCAGCGTCAAAACCAAACGCAAGAGTAATGCAGGTGATAACAATTCGTAGCAGATGATCGCCGAGGGCTGAACACTATGCTGGGTTACAGGGCAGGAGGAATTCATCCAAAGCAATAGGAGGACAATTGCTTAGATCAGGAAATGTTCTGCAAGATCAGGATCAGGAGCCGTATATTAGAGAACCAGTTATATTTTATAGACAAAACTAATTGCAAGTAAACATATATAGTTCTGTAAGCGCTTGATTTGAAGAAAAGGGGAAATTTTTCCAAAGGGGTTGTATAAAAGGGCAAAATTTATATTTCAGTTTCTAAAAAAAAAAAAAAAGA]

[+] EMBL CB666681             [GCTAGCTCTTTGTAGCTAGCTAGTCCTCCTGCTACCTAGGGGGGCGACGCCGCCGGACGGGGAGGAGGCCATGG CGTTCCACGGTCACCTCCCGCACGAGATGACCATGCAGGCGCTCGGCGCGGACGACGCGGC GGTGGCGGCGGCGGCGGCGGCGGGTGGGGTCGGGGCAGGCGGGGCGCCGGCGTGGATGAGGTACAACGACGGGAGCTTCCTGCACCTGCAGACCACGTCGGACTCGTCGGCGTCGCCGTCTGGCGCTGCGGCTGCGGCGGCGGCTGCGGCGGCGGCGGCGGCGGCCGGGGTGCAGCAGTGGATGGGTGGAGGCGGCGGCGGCGAGGACGCGGTGGCGGCCGCGATGGGCGGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL CB625958             [         agGTAGCTAGCTAGTCCTCCTGCTACCTAGGGGGGCGACGCCGCCGGACGGGGAGGAGGCCATGG CGTTCCACGGTCACCTCCCGCACGAGATGACCATGCAGGCGCTCGGCGCGGACGACGCGGC GGTGGCGGCGGCGGCGGCGGCGGGTGGGGTCGGGGCAGGCGGGGCGCCGGCGTGGATGAGGTACAACGACGGGAGCTTCCTGCACCTGCAGACCACGTCGGACTCGTCGGCGTCGCCGTCTGGCGCTGCGGCTGCGGCGGCGGCT         GCGGCGGCGGCCGGGGTGCAGCAGTGGATGGGTGGAGGCGGCGGCGGCGAGGACGCGGTGGCGGCCGCGATGGGCGGCGGCGGCNAGGCGGACGCGGCGCGGTGC AAGGCGGAGATACTGGCGCACCCGCTGTACGAGCAGCTGCTGTCGGCGCACGTGGCGTGCCTCCG CATCGCCACCCCGGTCGACCAGCTCCCCCGCATCGACGCGCAGCTCGCGCAGTCGCAGGGCGTC GTCGCCAAGTACTCCGCCCTCGCCGCCG CCGCCGCCGGGGACGACGGCCGCGAGCTCGACCAGTTCATGACGCACTACGTCTTGCTATTATGTTCGTTTAAAGAGCAGCTACAGCAGCATGTCCGTGTTCATGCCATGGAAGCAGTAATGGCATGCTG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CB641057             [                            CTGCTACCTAGGGGGGCGACGCCGCCGGACGGGGAGGAGGCCATGG CGTTCCACAGTCACCTCCCGCACGAGATGACCATGCATGCGCTCGGCGCGGACGACGCGGC GGTGGCGGCGGCGGCGGCGGCGGGTGGGGTCTGGGCAGGCGGGGCGCCCGCGTGGATGAAGTACAACGACGGGAGCTTCCTGCACCTGCAGACCACGTCGGACTCGTCGGCGTCGCCGTCTGGCGCTGCGGCTGCGGCGGCGGCTGCGGCGGCGGCGGCGGCGGCCCGGGTGCATCAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CB644215             [                                        GGGGCGACCCCGCCGGACGGGGAGGAGGCCATGGTCGTTCCACGGTCACCTCCCGCACGAGATGACCATGCAGGCGCTCGGCGCGGACGACGCGGC GGTGGCGGCGGCGGCGGCGGCGGGTGGGGTCGGGGCAGGCGGGGCGCCGGCGTGGATGAGGTACAACGACGGGAGCTTCCTGCACCTGCAGACCACGTCGGACTCGTCGGCGTCGCCGTCTGGCGCTGCGGCTGCGGCGGCGGCTGCGGCGGCGGCGGCGGCGGCCGGGGTGCAACAGTGGATGGGTGGAGGCGGCGGCGGCGAGGACGCGGTGGCGGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AU173856             [                                                        ACGGGGAGGAGGCCATGG CGTTCCACGGTCACCTCCCGCACGAGATGACCATGCAGGCGCTCGGCGCGGACGACGCGGCAGGTGGCGGCGGCGGCGGNGGCGGGTGGGGTCGGGGCAGGCGGGGCGCCGGCGTGGATGAGGTACAACGACGGGAGCTTNCTGCACCTGNAGACCACGTCGGACTCGTCGGCGTCGCCGTCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL AU167016             [                                                        ACGGGGAGGAGGCCATGG CGTTCCACGGTCACCTCCCGCACGAGATGACCATGCAGGCGCTCGGCGCGGACGACGCGGC GGTGGCGGCGGCGGCGGCGGCGGGTGGGGTCGGGGCAGGCGGGGCGCCGGCGTGGATGAGGTACAACGACGGGAGCTTCCTGCACCTGCAGACCACGTCGGACTCGTCGGCGTCGCCGTCTGGCGCTGCGGCTGCGGCGGCGGCTGCGGCGGCGGCGGCGGCGGNCGGGGTGCAGCAGTGGATGGGTGGAGGCGGCGGCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL AU083508             [                                                                                         CTCCCGCACGAGATGACCATGCAGGCGCTCGGCGCGGACGACGCGGC GGTGGCGGCGGCGGCGGCGGCGGGTGGGGTCGGGGCAGGCGGGGCGCCGGCGTGGATGAGGTACAACGACGGGAGCTTCCTGCACCTGCAGACCACGTCGGACTCGTCGGCGTCGCCGTCTGGCGCTGCGGCTGCGGCGGCGGCTGCGGCGGCGGCGGCGGCGGCCGGGGTGCAGCAGTGGATGGGTGGAGGCGGCGGCGGCGAGtgta                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CB681932             [                                                                                                                                                                                        CGGCGTGGATGAGGTACAACGACGGGAGCTTCCTGCACCTGCAGACCACGTCGGACTCGTCGGCGTCGCCGTCTGGCGCTGCGGCTGCGGCGGCGGCTGCGGCGGCGGCGGCGGCGGCCGGGGTGCAGCAGTGGATGGGTGGAGGCGGCGGCGGCGAGGACGCGGTGGCGGCCGCGATGGGCGGCGGCGGCAATGCCGACGC CCTGGGAGC CAGGCTGAGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BU667006             [                                                                                                                                                                                                                                                                                                                                                                             CGGCGGCGGCGAGGCGGACGCGGCGCGGTGC AAGGNGGAGATACTGGCGCACCCGCTGTACGAGCAGCTGCTGTCGGCGCACGTGGCGTGCCTCCGACATCGCCACCCCGGTCGACCAGCTCCCCCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BM422250             [                                                                                                                                                                                                                                                                                                                                                                               GCGGCGGCGAGGCGGACGCGGCGCGGTGCGAAGGCGGAGATACTGGCGCACCCGCTGTACGAGCAGCTGCTGTCGGCGCACGTGGCGTGCCTCCG CATCGCCACCCCGGTCGA CAGCTCCCCCGCATCGACGCGCAGCTCGCGCAGTCGCAGGGCGTCAGTCGCCAAGTACTCCGGCCTCGGCGCCGNCCGCCGCCGGGGACGACGGCCGCGAGCTCGACCAGTTCATGACGCACTACGTCTTGCTATTATGTTCGTTTAAAGAGCAGCTACAGCAGCATGTCCGTGTTCATGCCATGGAAGCNGTAATGGCATGCTGGGAACTTGAACAAAACCTTCAGAGTTTGACAGGTGCCTCGCCCGGTGAAGGCACGGGAGCAACCATGTCAGATGGTGCAAGATGATCAGGCCAGATAGCGAGGCCAACACATGTATGATCCAAGCTTGGATGGAGCGGATAACATGGGTTTCGGCCTTCCCACAGAAAGCGAGCGAT CCTAATGGAGCGTGT CGTCAAGAGCTAAAGCATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL BI810555             [                                                                                                                                                                                                                                                                                                                                                                                CGGCGGCGAGGCGGACGCGGCGCGGTGC AAGGCGGAGATACTGGCGCACCCGCTGTACGAGCAGCTGCTGTCGGCGCACGTGGCGTGCCTCCG CATCGCCACCCCGGTCGACCAGCTCCCCCGCATCGACGCGCAGCTCGCGCAGTCGCAGGGCGTC GTCGCCAAGTACTCCGCCCTCGCCGCCG CCGCCGCCGGGGACGACGGCCGCGAGCTCGACCAGTTCATGACGCACTACGTCTTGCTATTATGTTCGTTTAAAGAGCAGCTACAGCAGCATGTCCGTGTTCATGCCATGGAAGCAGTAATGGCATGCTGGGAACTTGAACAAAACCTTCAGAGTTTGACAGGTGCCTCGCCCGGTGAAGGCACGGGAGCAACCATGTCAGATGGTG AAGATGATCAGG CAGATAGCGAGG CAA ACATGTATGATCCAAGCTTGGATGGAGCGGATAACATGGGTTTCGG CTTCCCACAGAAAGCGAGCGATCCCTAATGGAGCGTGTCCGTCAAGAGCTAAAG ATGAACTAAAGAAGGGTTACAAAGAGAAGGTGATTGA ATAAGAGAAGAAATTCTTCGGAAG GGAGAG GGGGAAG TAC  GGAGAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CB681933             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CATGCTGGGAACTTGAACAAAACCTTCAGAGTTTGACAGGTGCCTCGCCCGGTGAAGGCACGGGAGCAACCATGTCAGACGGTG AAGATGATCAGG CAGATAGCGAGG CAA ACATGTATGATCCAAGCTTGGATGGAGCGGATAACATGGGTTTCGGCCTTCCCACAGAAAGCGAGCGATCCCTAATGGAGCGTGTCCGTCAAGAGCTAAAGCATGAACTAAAGCAGGGTTACAAAGAGAAGCTGATTGACATAAGAGAAGAAATTCTTCGCAAGCGAAGAGCGGGAAAGCTACCGGGAGACACGACTTCTACGTTAAAAGCTTGGTGGCAGTCTCATGCAAAGTGGCCATATCCAACAGAGGAAGACAAGGCACGGCTAGTCCAAGAAACAGGGCTACAGCTAAAGCAGATCAACAACTGGTTCATCAACCAAAGGAAAAGAAACTGGCACAGTAACCCATCTTCCTCCACCAGCGTCAAAACCAAACGCAAGAGTAATGCAGGTGATAACAATTCGTAGCAGATGATCGCCGAGGGCTGAACACTATGCTGGGTTACAGGGCAGGAGGAATTCATCCAAAGCAATAGGAGGACAATTGCTTAGATCAGGAAATGTTCTGCAAGATCAGGATCAGGAGCCGTATATTAGAGAACCAGTTATATTTTATAGACAAAACTAATTGCAAGTAAACATATATAGTTCTGTAAGCGCTTGATTTGAAGAAAAGGGGAAATTTTTCCAAAGGGGTTGTATAAAAGGGCAAAATTTATATTTCAGTTTCTAAAAAAAAAAAAAAAGA]




>consensus_15146#0
GCTAGCTCTTTGTAGCTAGCTAGTCCTCCTGCTACCTAGGGGGGCGACGCCGCCGGACGG
GGAGGAGGCCATGGCGTTCCACGGTCACCTCCCGCACGAGATGACCATGCAGGCGCTCGG
CGCGGACGACGCGGCGGTGGCGGCGGCGGCGGCGGCGGGTGGGGTCGGGGCAGGCGGGGC
GCCGGCGTGGATGAGGTACAACGACGGGAGCTTCCTGCACCTGCAGACCACGTCGGACTC
GTCGGCGTCGCCGTCTGGCGCTGCGGCTGCGGCGGCGGCTGCGGCGGCGGCGGCGGCGGC
CGGGGTGCAGCAGTGGATGGGTGGAGGCGGCGGCGGCGAGGACGCGGTGGCGGCCGCGAT
GGGCGGCGGCGGCGAGGCGGACGCGGCGCGGTGCAAGGCGGAGATACTGGCGCACCCGCT
GTACGAGCAGCTGCTGTCGGCGCACGTGGCGTGCCTCCGCATCGCCACCCCGGTCGACCA
GCTCCCCCGCATCGACGCGCAGCTCGCGCAGTCGCAGGGCGTCGTCGCCAAGTACTCCGC
CCTCGCCGCCGCCGCCGCCGGGGACGACGGCCGCGAGCTCGACCAGTTCATGACGCACTA
CGTCTTGCTATTATGTTCGTTTAAAGAGCAGCTACAGCAGCATGTCCGTGTTCATGCCAT
GGAAGCAGTAATGGCATGCTGGGAACTTGAACAAAACCTTCAGAGTTTGACAGGTGCCTC
GCCCGGTGAAGGCACGGGAGCAACCATGTCAGATGGTGAAGATGATCAGGCAGATAGCGA
GGCAAACATGTATGATCCAAGCTTGGATGGAGCGGATAACATGGGTTTCGGCCTTCCCAC
AGAAAGCGAGCGATCCCTAATGGAGCGTGTCCGTCAAGAGCTAAAGCATGAACTAAAGAA
GGGTTACAAAGAGAAGGTGATTGAATAAGAGAAGAAATTCTTCGGAAGGGAGAGGGGGAA
GTACGGAGAAGCGACTTCTACGTTAAAAGCTTGGTGGCAGTCTCATGCAAAGTGGCCATA
TCCAACAGAGGAAGACAAGGCACGGCTAGTCCAAGAAACAGGGCTACAGCTAAAGCAGAT
CAACAACTGGTTCATCAACCAAAGGAAAAGAAACTGGCACAGTAACCCATCTTCCTCCAC
CAGCGTCAAAACCAAACGCAAGAGTAATGCAGGTGATAACAATTCGTAGCAGATGATCGC
CGAGGGCTGAACACTATGCTGGGTTACAGGGCAGGAGGAATTCATCCAAAGCAATAGGAG
GACAATTGCTTAGATCAGGAAATGTTCTGCAAGATCAGGATCAGGAGCCGTATATTAGAG
AACCAGTTATATTTTATAGACAAAACTAATTGCAAGTAAACATATATAGTTCTGTAAGCG
CTTGATTTGAAGAAAAGGGGAAATTTTTCCAAAGGGGTTGTATAAAAGGGCAAAATTTAT
ATTTCAGTTTCTAAAAAAAAAAAAAAAGA

consensusID : consensus_15146#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 1230
fasta sequence

                              [CCCCCTTTGCAGGGCTTTTTGCCTACCCTCCTCTTCCTCTACACCTCATACTCCTAGCTCTCTACCTCTCTAGCTAGCTAGCTATAGGTAGCTAGCTAGTCCTCCTGCTACCTAGGGGGGCGACGCCGCCGCCGCCGGGGACGACGGCCGCGAGCTCGACCAGTTCATGACGCACTACGTCTTGCTATTATGTTCGTTTAAAGAGCAGCTACAGCAGCATGTCCGTGTTCATGCTATG-GAAGCAGTAATGGCATGCTGGGAACTTGAACAAAACCTTCAGAGTTTGACAGGTGCCTCGCCCGGTGAAGGCACGGGAGCAACCATGTCAGACGGTGAAGATGATCAGGCAGATAGCGAGGCAAACATGTATGATCCAAGCTTGGATGGAGCGGATAACATGGGTTTCGGCCTTCCCACAGAAAGCGAGCGATCCCTAATGGAGCGTGTCCGTCAAGAGCTAAAGCATGAACTAAAGCAGGGTTACAAAGAGAAGCTGATTGACATAAGAGAAGAAATTCTTCGCAAGCGAAGAGCGGGAAAGCTACCGGGAGACACGACTTCTACGTTAAAAGCTTGGTGGCAGTCTCATGCAAAGTGGCCATATCCAACAGAGGAAGACAAGGCACGGCTAGTCCAAGAAACAGGGCTACAGCTAAAGCAGATCAACAACTGGTTCATCAACCAAAGG-AAAAGAAACTGGCACAGTAACCCATCTTCCTCCACCAGCGTCAAAACCAAACGCAAG--------AGGTGATAACAATTCGTAGCAGATGATCGCCGAGGGCTGAACACTATGCTGGGTTACAGGGCAGGAGGAATTCATCCAAAGCAATAGGAGGACAATTGCTTAGATCAGGAAATGTTCTGCAAGATCAGGATCAGGAGCCGTATATTAGAGAACCAGTTATATTTTATAGACAAAACTAATTGCAAGTAAACATATATAGTTCTGTAAGCGCTTGATTTGAAGAAAAGGGGAAATTTTTCCAAAGGGGTTGTATAAAATGGCGAAATTTATATTTCAGTTTCTAGATACCACTGGGTAATACTGCTCATAGCACTGGTGTTGATGTTTTTGTTCTCCATGCGTCGTAGACAAGCGGTTGAACCGTCCGCTTCAGACGATTTTTTTCACAC-GTATATATGTATGTATTGCTGTGGGTTTATTTAAAAAATCTATTGTGTTCTGCTGCACTCTGTGTGCTTAATCAGTTAATCACTTATATAAAAAAA]

[+] EMBL CB685002             [CCCCCTTTGCAGGGCTTTTTGCCTACCCTCCTCTTCCTCTACACCTCATACTCCTAGCTCTCTACCTCTCTAGCTACCTAGCTATAGGTAGCTAGCTAGTCCTCCTGCTACCTAGGGGGGCGACGCCGCCGCCGCCGGGGACGACGGCCGCGAGCTCGACCAGTTCATGACGCACTACGTCTTGCTATTATGTTCGTTTAAAGAGCAGCTACAGCAGCATGTCCGTGTTCATGCTATG GAAGCAGTAATGGCATGCTGGGAACTTGAACAAAACCTTCAGAGTTTGACAGGTGCCTCGCCCGGTGAAGGCACGGGAGCAACCATGTCAGACGGTGAAGATGATCAGGCAGATAGCGAGGCAAACATGTATGATCCAAGCTTGGATGGAGCGGATAACATGGGTTTCGGCCTTCCCACAGAAAGCGAGCGATCCCTAATGGAGCGTGTCCGTCAAGAGCTAAAGCATGAACTAAAGCAGGGTTACAAAGAGAAGCTGATTGACATAAGAGAAGAAATTCTTCGCAAGCGAAGAGCGGGAAAGCTACCGGGAGACACGACTTCTACGTTAAAAGCTTGGTGGCAGTCTCATGCAAAGTGGCCATATCCAACAGAGGAAGACAAGGCACGGCTAGTCCAAGAAACAGGGCTACAGCTAAAGCAGATCAACAACTGGTTCATCAACCAAAGGAAAAAGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AK111645             [                                                       AGCTCTCTACCTCTCTAGCTAGCTAGCTATAGGTAGCTAGCTAGTCCTCCTGCTACCTAGGGGGGCGACGCCGCCGCCGCCGGGGACGACGGCCGCGAGCTCGACCAGTTCATGACGCACTACGTCTTGCTATTATGTTCGTTTAAAGAGCAGCTACAGCAGCATGTCCGTGTTCATGCTATG GAAGCAGTAATGGCATGCTGGGAACTTGAACAAAACCTTCAGAGTTTGACAGGTGCCTCGCCCGGTGAAGGCACGGGAGCAACCATGTCAGACGGTGAAGATGATCAGGCAGATAGCGAGGCAAACATGTATGATCCAAGCTTGGATGGAGCGGATAACATGGGTTTCGGCCTTCCCACAGAAAGCGAGCGATCCCTAATGGAGCGTGTCCGTCAAGAGCTAAAGCATGAACTAAAGCAGGGTTACAAAGAGAAGCTGATTGACATAAGAGAAGAAATTCTTCGCAAGCGAAGAGCGGGAAAGCTACCGGGAGACACGACTTCTACGTTAAAAGCTTGGTGGCAGTCTCATGCAAAGTGGCCATATCCAACAGAGGAAGACAAGGCACGGCTAGTCCAAGAAACAGGGCTACAGCTAAAGCAGATCAACAACTGGTTCATCAACCAAAGG AAAAGAAACTGGCGCAGTAACCCATCTTCCTCCACCAGCGTCAAAACCAAACGCAAG        AGGTGATAACAATTCGTAGCAGATGATCGCCGAGGGCTGAACACTATGCTGGGTTACAGGGCAGGAGGAATTCATCCAAAGCAATAGGAGGACAATTGCTTAGATCAGGAAATGTTCTGCAAGATCAGGATCAGGAGCCGTATATTAGAGAACCAGTTATATTTTATAGACAAAACTAATTGCAAGTAAACATATATAGTTCTGTAAGCGCTTGATTTGAAGAAAAGGGGAAATTTTTCCAAAGGGGTTGTATAAAATGGCGAAATTTATATTTCAGTTTCTAGATACCACTGGGTAATACTGCTCATAGCACTGGTGTTGATGTTTTTGTTCTCCATGCGTCGTAGACAAGCGGTTGAACCGTCCGCTTCAGACGATTTTTTTCACAC GTATATATGTATGTATTGCTGTGGGTT                                                                     ]
[+] EMBL AU173437             [                                                                  TCTCTAGCTAGCTAGCTATAGGTAGCTAGCTAGTCCTCCTGCTACCTAGGGGGGCGA   CGCCGCCGCCGGGGACGACGGCCGCGAGCTCGACCAGTTCATGACGCACTACGTCTTGCTATTATGTTCGTTTAAAGAGCAGCTACAGCAGCATGTCCGTGTTCATGCTATG GAAGCAGTAATGGCATGCTGGGAACTTGAACAAAACCTTCAGAGTTTGACAGGTGCCTCGCCCGGTGAAGGCACGGGAGCAACCATGTCAGACGGTGAAGATGATCAGGCAGATAGCGAGGCAAACATGTATGATCCAAGCTTGGATGGAGCGGATAACATGGGTTTCGGCCTTCCCACAGAAAGCGAGCGATCCCTAATGGAGCGTGTCCGTCAAGAGCTAAAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL CB644219             [                                                                                                                                                                                                                              CCGTGTTCATGCTATG GAAGCAGTAATGGCATGCTGGGAACTTGAACAAAACCTTCAGAGTTTGACAGGTGCCTCGCCCGGTGAAGGCACGGGAGCAACCATGTCAGACGGTGAAGATGATCAGGCAGATAGCGAGGCAAACATGTATGATCCAAGCTTGGATGGAGCGGATAACATGGGTTTCGGCCTTCCCACAGAAAGCGAGCGATCCCTAATGGAGCGTGTCCGTCAAGAGCTAAAGCATGAACTAAAGCAGGGTTACAAAGAGAAGCTGATTGACATAAGAGAAGAAATTCTTCGCAAGCGAAGAGCGGGAAAGCTACCGGGAGACACGACTTCTACGTTAAAAGCTTGGTGGCAGTCTCATGCAAAGTGGCCATATCCAACAGAGGAAGACAAGGCACGGCTAGTCCAAGAAACAGGGCTACAGCTAAAGCAGATCAACAACTGGTTCATCAACCAAAGG AAAAGAAACTGGCACAGTAACCCATCTTCCTCCACCAGCGTCAAAACCAAACGCAAGAGTAATGCAGGTGATAACAATTCGTAGCAGATGATCGCCGAGGGCTGAACACTATGCTGGGTTACAGGGCAGGAGGAATTCATCCAAAGCAATAGGAGGACAATTGCTTAGATCAGGAAATGTTCTGCAAGATCAGGATCAGGAGCCGTATATTAGAGAACCAGTTATATTTTATAGACAAAACTAATTGCAAGTAAACATATATAGTTCTGTAAGCGCTTGATTTGAAGAAAAGGGGAAATTTTTCCAAAGGGGTTGTATA                                                                                                                                                                                                                                        ]
[+] EMBL CF293202             [                                                                                                                                                                                                                                     CATGGACTGAGGAGTAGAAATTGCATGCTGGGAACTTGAACAAAACCTTCAGAGTTTGACAGGTGCCTCGCCCGGTGAAGGCACGGGAGCAACCATGTCAGACGGTGAAGATGATCAGGCAGATAGCGAGGCAAACATGTATGATCCAAGCTTGGATGGAGCGGATAACATGGGTTTCGGCCTTCCCACAGAAAGCGAGCGATCCCTAATGGAGCGTGTCCGTCAAGAGCTAAAGCATGAACTAAAGCAGGGTTACAAAGAGAAGCTGATTGACATAAGAGAAGAAATTCTTCGCAAGCGAAGAGCGGGAAAGCTACCGGGAGACACGACTTCTACGTTAAAAGCTTGGTGGCAGTCTCATGCAAAGTGGCCATATCCAACAGAGGAAGACAAGGCACGGCTAGTCCAAGAAACAGGGCTACAGCTAAAGCAGATCAACAACTGGTTCATCAACCAAAGG AAAAGAAACTGGCACAGTAACCCATCTTCCTCCACCAGCGTCAAAACCAAACGCAAGAGTAATGCAGGTGATAACAATTCGTAGCAGATGATCGCCGAGGGCTGAACA                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL BI810489             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GGT GCAGTCTCATGCAAAGTGGCCATATCCAACAGAGGAAGACAAGGCACGGCTAGTCCAAGAAACAGGGCTACAGCTAAAGCAGATCAACAACTGGTTCATCAACCAAAGG AAAAGAAACTGGCACAGTAACCCATCTTCCTCCACCAGCGTCAAAACC AACGCAAG        AGGTGATAACAATTCGTAGCAGATGATC CCGAGGGCTGAACACTATGCTGGGTTACAGGGCAGGAGGAATTCATCCAAAGCAATAGGAGGACAATTGCTTAGATCAGGAAATGTTCTGCAAGATCAGGATCAGGAGCCGTATATTAGAGAACCAGTTATATTTTATAGACAAAACTAATTGCAAGTAAACATATATAGTTCTGTAAGCGCTTGATTTGAAGAAAAGGGGAAATTTTTCCCAAGGGGTTGTAAAAAAaaaa                                                                                                                                                                                                                                 ]
[-] EMBL CF293203             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GGTGATAACAATTCGTAGCAGATGATCGCCGAGGGCTGAACACTATGCTGGGTTACAGGGCAGGAGGAATTCATCCAAAGCAATAGGAGGACAATTGCTTAGATCAGGAAATGTTCTGCAAGATCAGGATCAGGAGCCGTATATTAGAGAACCAGTTATATTTTATAGACAAAACTAATTGCAAGTAAACATATATAGTTCTGTAAGCGCTTGATTTGAAGAAAAGGGGAAATTTTTCCAAAGGGGTTGTATAAAATGGCGAAATTTATATTTCAGTTTCTAGATACCACTGGGTAATACTGCTCATAGCGCTGGTGTTGATGTTTTTGTTCTCCATGCGTCGTAGGCAAGCGGTTGAACCGTCCGCTTCAGACGATTTTTTTCACAC GTATATATGTATGTAATGCTGTGGGTTTATTTAAAAAA                                                          ]
[+] EMBL AU173438             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TGGGTTACAGGGCAGGAGGAATTCATCCAAAGCAATAGGAGGACAATTGCTTAGATCAGGAAATGTTCTGCAAGATCAGGATCAGGAGCCGTATATTAGAGAACCAGTTATATTTTATAGACAAAACTAATTGCAAGTAAACATATATAGTTCTGTAAGCGCTTGATTTGAAGAAAAGGGGAAATTTTTCCAAAGGGGTTGTATAAAATGGCGAAATTTATATTTCAGTTTCTAGATACCACTGGGTAATACTGCTCATAGCACTGGTGTTGATGTTTTTGTTCTCCATGCGTCGTAGACAAGCGGTTGAACCGTCCGCTTCAGACGATTTTTTTCACACGGTATATATGTATGTATTGCTGTGGGTTTATTTAGCTTATCTATTGTGTTCTGCTGCACTCTGTGTGCTTAATCAGTTAATCACTTATATAAAAAAA]




>consensus_15146#1
CCCCCTTTGCAGGGCTTTTTGCCTACCCTCCTCTTCCTCTACACCTCATACTCCTAGCTC
TCTACCTCTCTAGCTAGCTAGCTATAGGTAGCTAGCTAGTCCTCCTGCTACCTAGGGGGG
CGACGCCGCCGCCGCCGGGGACGACGGCCGCGAGCTCGACCAGTTCATGACGCACTACGT
CTTGCTATTATGTTCGTTTAAAGAGCAGCTACAGCAGCATGTCCGTGTTCATGCTATGGA
AGCAGTAATGGCATGCTGGGAACTTGAACAAAACCTTCAGAGTTTGACAGGTGCCTCGCC
CGGTGAAGGCACGGGAGCAACCATGTCAGACGGTGAAGATGATCAGGCAGATAGCGAGGC
AAACATGTATGATCCAAGCTTGGATGGAGCGGATAACATGGGTTTCGGCCTTCCCACAGA
AAGCGAGCGATCCCTAATGGAGCGTGTCCGTCAAGAGCTAAAGCATGAACTAAAGCAGGG
TTACAAAGAGAAGCTGATTGACATAAGAGAAGAAATTCTTCGCAAGCGAAGAGCGGGAAA
GCTACCGGGAGACACGACTTCTACGTTAAAAGCTTGGTGGCAGTCTCATGCAAAGTGGCC
ATATCCAACAGAGGAAGACAAGGCACGGCTAGTCCAAGAAACAGGGCTACAGCTAAAGCA
GATCAACAACTGGTTCATCAACCAAAGGAAAAGAAACTGGCACAGTAACCCATCTTCCTC
CACCAGCGTCAAAACCAAACGCAAGAGGTGATAACAATTCGTAGCAGATGATCGCCGAGG
GCTGAACACTATGCTGGGTTACAGGGCAGGAGGAATTCATCCAAAGCAATAGGAGGACAA
TTGCTTAGATCAGGAAATGTTCTGCAAGATCAGGATCAGGAGCCGTATATTAGAGAACCA
GTTATATTTTATAGACAAAACTAATTGCAAGTAAACATATATAGTTCTGTAAGCGCTTGA
TTTGAAGAAAAGGGGAAATTTTTCCAAAGGGGTTGTATAAAATGGCGAAATTTATATTTC
AGTTTCTAGATACCACTGGGTAATACTGCTCATAGCACTGGTGTTGATGTTTTTGTTCTC
CATGCGTCGTAGACAAGCGGTTGAACCGTCCGCTTCAGACGATTTTTTTCACACGTATAT
ATGTATGTATTGCTGTGGGTTTATTTAAAAAATCTATTGTGTTCTGCTGCACTCTGTGTG
CTTAATCAGTTAATCACTTATATAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15146#0      GCTAGCTCTTTGTAGCTAGCTAGTCCTCCTGCTACCTAGGGGGGCGACGCCGCCGGACGG 60
consensus_15146#1      ------------------------------------------------------------
                                                                                   

consensus_15146#0      GGAGGAGGCCATGGCGTTCCACGGTCACCTCCCGCACGAGATGACCATGCAGGCGCTCGG 120
consensus_15146#1      ------------------------------------------------------------
                                                                                   

consensus_15146#0      CGCGGACGACGCGGCGGTGGCGGCGGCGGCGGCGGCGGGTGGGGTCGGGGCAGGCGGGGC 180
consensus_15146#1      ------------------------------------------------------------
                                                                                   

consensus_15146#0      GCCGGCGTGGATGAGGTACAACGACGGGAGCTTCCTGCACCTGCAGACCACGTCGGACTC 240
consensus_15146#1      ------------------------------------------------------------
                                                                                   

consensus_15146#0      GTCGGCGTCGCCGTCTGGCGCTGCGGCTGCGGCGGCGGCTGCGGCGGCGGCGGCGGCGGC 300
consensus_15146#1      ------------------------------------------------------------
                                                                                   

consensus_15146#0      CGGGGTGCAGCAGTGGATGGGTGGAGGCGGCGGCGGCGAGGACGCGGTGGCGGCCGCGAT 360
consensus_15146#1      ------------------------------------------------------------
                                                                                   

consensus_15146#0      GGGCGGCGGCGGCGAGGCGGACGCGGCGCGGTGCAAGGCGGAGATACTGGCGCACCCGCT 420
consensus_15146#1      ------------------------------------------------------CCCCCT 6
                                                                             *** **

consensus_15146#0      GTACGAGCAGCTGCTGTCGGCGCACGTGGCGTGCCTCCGCATCGCCACCCCGGTCGACCA 480
consensus_15146#1      TTGCAGG-----GCTTTTTGCCTACCC-----TCCTCTTCCTCTACACCTCATACTCCTA 56
                        * *  *     *** *  **  **        ****  * **  **** *   *  * *

consensus_15146#0      GCTCCCCCGCATCGACGCGCAGCTCGC-GCAGTCGCAGGGCGTCGTCGCCAAGTACTCCG 539
consensus_15146#1      GCTCTCT-ACCTCTCTAGCTAGCTAGCTATAGGTAGCTAGCTAGTCCTCCTGCTACCTAG 115
                       **** *   * **       **** **   **       **     * **   ***   *

consensus_15146#0      CCCT-CGCCGCCGCCGCCGCCGGGGACGACGGCCGCGAGCTCGACCAGTTCATGACGCAC 598
consensus_15146#1      GGGGGCGACGCCGCCGCCGCCGGGGACGACGGCCGCGAGCTCGACCAGTTCATGACGCAC 175
                            ** ****************************************************

consensus_15146#0      TACGTCTTGCTATTATGTTCGTTTAAAGAGCAGCTACAGCAGCATGTCCGTGTTCATGCC 658
consensus_15146#1      TACGTCTTGCTATTATGTTCGTTTAAAGAGCAGCTACAGCAGCATGTCCGTGTTCATGCT 235
                       *********************************************************** 

consensus_15146#0      ATGGAAGCAGTAATGGCATGCTGGGAACTTGAACAAAACCTTCAGAGTTTGACAGGTGCC 718
consensus_15146#1      ATGGAAGCAGTAATGGCATGCTGGGAACTTGAACAAAACCTTCAGAGTTTGACAGGTGCC 295
                       ************************************************************

consensus_15146#0      TCGCCCGGTGAAGGCACGGGAGCAACCATGTCAGATGGTGAAGATGATCAGGCAGATAGC 778
consensus_15146#1      TCGCCCGGTGAAGGCACGGGAGCAACCATGTCAGACGGTGAAGATGATCAGGCAGATAGC 355
                       *********************************** ************************

consensus_15146#0      GAGGCAAACATGTATGATCCAAGCTTGGATGGAGCGGATAACATGGGTTTCGGCCTTCCC 838
consensus_15146#1      GAGGCAAACATGTATGATCCAAGCTTGGATGGAGCGGATAACATGGGTTTCGGCCTTCCC 415
                       ************************************************************

consensus_15146#0      ACAGAAAGCGAGCGATCCCTAATGGAGCGTGTCCGTCAAGAGCTAAAGCATGAACTAAAG 898
consensus_15146#1      ACAGAAAGCGAGCGATCCCTAATGGAGCGTGTCCGTCAAGAGCTAAAGCATGAACTAAAG 475
                       ************************************************************

consensus_15146#0      AAGGGTTACAAAGAGAAGGTGATTGA-ATAAGAGAAGAAATTCTTCGGAAG-GGAGAGGG 956
consensus_15146#1      CAGGGTTACAAAGAGAAGCTGATTGACATAAGAGAAGAAATTCTTCGCAAGCGAAGAGCG 535
                        ***************** ******* ******************** *** * **** *

consensus_15146#0      GGAAG--TAC--GGAGAAGCGACTTCTACGTTAAAAGCTTGGTGGCAGTCTCATGCAAAG 1012
consensus_15146#1      GGAAAGCTACCGGGAGACACGACTTCTACGTTAAAAGCTTGGTGGCAGTCTCATGCAAAG 595
                       ****   ***  *****  *****************************************

consensus_15146#0      TGGCCATATCCAACAGAGGAAGACAAGGCACGGCTAGTCCAAGAAACAGGGCTACAGCTA 1072
consensus_15146#1      TGGCCATATCCAACAGAGGAAGACAAGGCACGGCTAGTCCAAGAAACAGGGCTACAGCTA 655
                       ************************************************************

consensus_15146#0      AAGCAGATCAACAACTGGTTCATCAACCAAAGGAAAAGAAACTGGCACAGTAACCCATCT 1132
consensus_15146#1      AAGCAGATCAACAACTGGTTCATCAACCAAAGGAAAAGAAACTGGCACAGTAACCCATCT 715
                       ************************************************************

consensus_15146#0      TCCTCCACCAGCGTCAAAACCAAACGCAAGAGTAATGCAGGTGATAACAATTCGTAGCAG 1192
consensus_15146#1      TCCTCCACCAGCGTCAAAACCAAACGCAAG--------AGGTGATAACAATTCGTAGCAG 767
                       ******************************        **********************

consensus_15146#0      ATGATCGCCGAGGGCTGAACACTATGCTGGGTTACAGGGCAGGAGGAATTCATCCAAAGC 1252
consensus_15146#1      ATGATCGCCGAGGGCTGAACACTATGCTGGGTTACAGGGCAGGAGGAATTCATCCAAAGC 827
                       ************************************************************

consensus_15146#0      AATAGGAGGACAATTGCTTAGATCAGGAAATGTTCTGCAAGATCAGGATCAGGAGCCGTA 1312
consensus_15146#1      AATAGGAGGACAATTGCTTAGATCAGGAAATGTTCTGCAAGATCAGGATCAGGAGCCGTA 887
                       ************************************************************

consensus_15146#0      TATTAGAGAACCAGTTATATTTTATAGACAAAACTAATTGCAAGTAAACATATATAGTTC 1372
consensus_15146#1      TATTAGAGAACCAGTTATATTTTATAGACAAAACTAATTGCAAGTAAACATATATAGTTC 947
                       ************************************************************

consensus_15146#0      TGTAAGCGCTTGATTTGAAGAAAAGGGGAAATTTTTCCAAAGGGGTTGTATAAAAGGGCA 1432
consensus_15146#1      TGTAAGCGCTTGATTTGAAGAAAAGGGGAAATTTTTCCAAAGGGGTTGTATAAAATGGCG 1007
                       ******************************************************* *** 

consensus_15146#0      AAATTTATATTTCAGTTTCTAAAAAAAAAAAAAAAGA----------------------- 1469
consensus_15146#1      AAATTTATATTTCAGTTTCTAGATACCACTGGGTAATACTGCTCATAGCACTGGTGTTGA 1067
                       ********************* * *  *      *                         

consensus_15146#0      ------------------------------------------------------------
consensus_15146#1      TGTTTTTGTTCTCCATGCGTCGTAGACAAGCGGTTGAACCGTCCGCTTCAGACGATTTTT 1127
                                                                                   

consensus_15146#0      ------------------------------------------------------------
consensus_15146#1      TTCACACGTATATATGTATGTATTGCTGTGGGTTTATTTAAAAAATCTATTGTGTTCTGC 1187
                                                                                   

consensus_15146#0      -------------------------------------------
consensus_15146#1      TGCACTCTGTGTGCTTAATCAGTTAATCACTTATATAAAAAAA 1230