These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15152#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1197 fasta sequence [TTCCTCGAGCACTGTTGGCCTACTGGATATCGATAGAAAGGCGCCGCGCGTGCTCCTCCTCCTCCTCCTCCGATTCCAATCCAATCCAATCCGATTCAGAAGTAGAGCGAGCGGCGGCTGCGGCGATGGCGGTGGCGGCGGTGCGGGCGGCGGCGGCGGACGCGGCGGTGACGTTCCTGTGGGTGCTGTGCGTGTCGACGCTGGGGGCGTCGACG-GCGGCGGTGACGTCGTACCTCCGCATCCACGAGGGGATCCACTACGCGCTCCTCGTCACCGTCTCCCTCCTCTCCGTGCTCCTCTTCGCCTTCAACCTCCTCTGCGACGCCCTCGGCGGCGCCAGC-TTCAACCCCACCGCCCTCGCCGCCTTCCACGCCGCCGGCCTCTCCTCCCCCCGCCACTCCTCCCTCTTCCCCCTCGCCCTCCGCTTCCCCGCCCAGGCCGCGGGTGCGGTGGGTGGGGCGATGGCGATCTCGGAGCTGATGCCGGAGCAGTACAAGCACATGCTCGGGGGGCCATCGCTCAAGGTGGATCTCCACACGGGTGCCGCCGCCGAGCTGGTGCTCACCTTCGTCATCACCTTGGCCGTGCTCTGGATCATCGT-CAAGGGGCCCCGTAATCCCATCGTCAAGACCTGGATGCTCTCCATCTCCACCGTTTGCCTCGTCCTCACCGGCGCTGCCTACACTGGCCCATCCATGAACCCTGCCAATGCGTTTGGCTGGGCATATGTGAACAATCGCCACAACACATGGGAGCAATTCTACGTCTACTGGATATGCCCTTTTGTTGGCGCTGTTCTTGCTGCCTGGGTCTT-CAGGGCCGTGTTCCCACCACCGGCACCTAAACCTAAGGCCAAGAAAGCATGAGGAAATCAAGCACAAACTTCAACTCAGGAGTTGGTACAGATGTTGGGTTTGAAGAACCCAACATTATTTATTAGCTAGAATGGTACAAGGAATAATCCTTTCCACCATATTTAATTCAAAGTAATTTAGGTAATTAGCTTCGGAACACTGACAAACCCAAGAGCATGCACATTAATTTGATTGGACGACCTGAATGTAATTTCAATCATTCATTGGTCTTGTTTGCTCTTGAACTGGTGGATGGTATGAATGGATATTATAAATTTATCAGTAAAAA-------AAAAAAAAAAAAAAAGGCCACATGTGCTCGAGCTGCAGGTCGCGGCCGCTAGAC] [+] EMBL AK109424 [TTCCTCGAGCACTGTTGGCCTACTGGATATCGATAGAAAGGCGCCGCGCGTGCTCCTCCTCCTCCTCCTCCGATTCCAATCCAATCCAATCCGATTCAGAAGTAGAGCGAGCGGCGGCTGCGGCGATGGCGGTGGCGGCGGTGCGGGCGGCGGCGGCGGACGCGGCGGTGACGTTCCTGTGGGTGCTGTGCGTGTCGACGCTGGGGGCGTCGACG GCGGCGGTGACGTCGTACCTCCGCATCCACGAGGGGATCCACTACGCGCTCCTCGTCACCGTCTCCCTCCTCTCCGTGCTCCTCTTCGCCTTCAACCTCCTCTGCGACGCCCTCGGCGGCGCCAGC TTCAACCCCACCGCCCTCGCCGCCTTCCACGCCGCCGGCCTCTCCTCCCCCCGCCACTCCTCCCTCTTCCCCCTCGCCCTCCGCTTCCCCGCCCAGGCCGCGGGTGCGGTGGGTGGGGCGATGGCGATCTCGGAGCTGATGCCGGAGCAGTACAAGCACATGCTCGGGGGGCCATCGCTCAAGGTGGATCTCCACACGGGTGCCGCCGCCGAGCTGGTGCTCACCTTCGTCATCACCTTGGCCGTGCTCTGGATCATCGT CAAGGGGCCCCGTAATCCCATCGTCAAGACCTGGATGCTCTCCATCTCCACCGTTTGCCTCGTCCTCACCGGCGCTGCCTACACTGGCCCATCCATGAACCCTGCCAATGCGTTTGGCTGGGCATATGTGAACAATCGCCACAACACATGGGAGCAATTCTACGTCTACTGGATATGCCCTTTTGTTGGCGCTGTTCTTGCTGCCTGGGTCTT CAGGGCCGTGTTCCCACCACCGGCACCTAAACCTAAGGCCAAGAAAGCATGAGGAAATCAAGCACAAACTTCAACTCAGGAGTTGGTACAGATGTTGGGTTTGAAGAACCCAACATTATTTATTAGCTAGAATGGTACAAGGAATAATCCTTTCCACCATATTTAATTCAAAGTAATTTAGGTAATTAGCTTCGGAACACTGACAAACCCAAGAGCATGCACATTAATTTGATTGGACGACCTGAATGTAATTTCAATCATTCATTGGTCTTGTTTGCTCTTGAACTGGTGGATGGTATGAATGGATATTATAAATTTATCAGTAAAAA AAAAAAAAAAAAAAAGGCCACATGTGCTCGAGCTGCAGGTCGCGGCCGCTAGAC] [+] EMBL AK069381 [ CTCCTCCTCCTCCTCCGATTCCAATCCAATCCAATCCGATTCAGAAGTAGAGCGAGCGGCGGCTGCGGCGATGGCGGTGGCGGCGGTGCGGGCGGCGGCGGCGGACGCGGCGGTGACGTTCCTGTGGGTGCTGTGCGTGTCGACGCTGGGGGCGTCGACG GCGGCGGTGACGTCGTACCTCCGCATCCACGAGGGGATCCACTACGCGCTCCTCGTCACCGTCTCCCTCCTCTCCGTGCTCCTCTTCGCCTTCAACCTCCTCTGCGACGCCCTCGGCGGCGCCAGC TTCAACCCCACCGCCCTCGCCGCCTTCCACGCCGCCGGCCTCTCCTCCCCCCGCCACTCCTCCCTCTTCCCCCTCGCCCTCCGCTTCCCCGCCCAGGCCGCGGGTGCGGTGGGTGGGGCGATGGCGGTCTCGGAGCTGATGCCGGAGCAGTACAAGCACATGCTCGGGGGGCCATCGCTCAAGGTGGATCTCCACACGGGTGCCGCCGCCGAGCTGGTGCTCACCTTCGTCATCACCTTGGCCGTGCTCTGGATCATCGT CAAGGGGCCCCGTAATCCCATCGTCAAGACCTGGATGCTCTCCATCTCCACCGTTTGCCTCGTCCTCACCGGCGCTGCCTACACTGGCCCATCCATGAACCCTGCCAATGCGTTTGGCTGGGCATATGTGAACAATCGCCACAACACATGGGAGCAATTCTACGTCTACTGGATATGCCCTTTTGTTGGCGCTGTTCTTGCTGCCTGGGTCTT CAGGGCCGTGTTCCCACCACCGGCACCTAAACCTAAGGCCAAGAAAGCATGAGGAAATCAAGCACAAACTTCAACTCAGGAGTTGGTACAGATGTTGGGTTTGAAGAACCCAACATTATTTATTAGCTAGAATGGTACAAGGAATAATCCTTTCCACCATATTTAATTCAAAGTAATTTAGGTAATTAGCTTCGGAACACTGACAAACCCAAGAGCATGCACATTAATTTGATTGGACGACCTGAATGTAATTTCAATCATTCATTGGTCTTGTTTGCTCTTGAACTGGTGGATGGTATGAATGGATATTATAA ] [+] EMBL AK106185 [ CAATCCAATCCAATCCGATTCAGAAGTAGAGCGAGCGGCGGCTGCGGCGATGGCGGTGGCGGCGGTGCGGGCGGCGGCGGCGGACGCGGCGGTGACGTTCCTGTGGGTGCTGTGCGTGTCGACGCTGGGGGCGTCGACG GCGGCGGTGACGTCGTACCTCCGCATCCACGAGGGGATCCACTACGCGCTCCTCGTCACCGTCTCCCTCCTCTCCGTGCTCCTCTTCGCCTTCAACCTCCTCTGCGACGCCCTCGGCGGCGCCAGC TTCAACCCCACCGCCCTCGCCGCCTTCCACGCCGCCGGCCTCTCCTCCCCCCGCCACTCCTCCCTCTTCCCCCTCGCCCTCCGCTTCCCCGCCCAGGCCGCGGGTGCGGTGGGTGGGGCGATGGCGATCTCGGAGCTGATGCCGGAGCAGTACAAGCACATGCTCGGGGGGCCATCGCTCAAGGTGGATCTCCACACGGGTGCCGCCGCCGAGCTGGTGCTCACCTTCGTCATCACCTTGGCCGTGCTCTGGATCATCGT CAAGGGGCCCCGTAATCCCATCGTCAAGACCTGGATGCTCTCCATCTCCACCGTTTGCCTCGTCCTCACCGGCGCTGCCTACACTGGCCCATCCATGAACCCTGCCAATGCGTTTGGCTGGGCATATGTGAACAATCGCCACAACACATGGGAGCAATTCTACGTCTACTGGATATGCCCTTTTGTTGGCGCTGTTCTTGCTGCCTGGGTCTT CAGGGCCGTGTTCCCACCACCGGCACCTAAACCTAAGGCCAAGAAAGCATGAGGAAATCAAGCACAAACTTCAACTCAGGAGTTGGTACAGATGTTGGGTTTGAAGAACCCAACATTATTTATTAGCTAGAATGGTACAAGGAATAATCCTTTCCACCATATTTAATTCAAAGTAATTTAGGTAATTAGCTTCGGAACACTGACAAACCCAAGAGCATGCACATTAATTTGATTGGACGACCTGAATGTAATTTCAATCATTCATTGGTCTTGTTTGCTCTTGAACTGGTGGATGGTATGAATGGATATTATAAATTTATCAGTAAtta g ] [+] EMBL AU101339 [ CCAATCCAATCCGATTCAGAAGTAGAGCGAGCAGCGGCTGCGGCGATGGCGGTGGCGGCGGTGCGGGCGGCGGCGGCGGACGCGGCGGTGACGTTCCTGTGGGTGCTGTNCGTATCGACGCTGGGGGCGT NACG GCGGCGGTGACGTCGTACCTTCGCATCCACGAGGGGAT CACTACGCGCTCCTCGTCACCGTCTCCCTCCTCTCCGTGCTCCTCTTCGCCTTCAACCTCCTCTTCGAAG CCTCGG GGCGCAANT TTCAACCCC ] [+] EMBL AU068196 [ CCAATCCGATTCANAAGTAGAGCGAGCGGCGGCTGCGGCGATGGCGGTGGCGGCGGTGCGGGCGGCGGCGGCGGACGCGGCGGTGACGTTCCTGTGGGTGCTGTGCGTNTCGACGCTGGGGGCGT GNGG NCGGCGGTGACGTCGTACCTCCGCATCCACGAGGGGATCCACTACGCGCTCCTCGTCACCGTCTCCCTCCTCTCCGTGCTCCTCTTCGCCTTCAACCTCCTCTGCAACGCCCTCGG GGCGCNAACTTTCAACCCCACCGCCCTCGCCGNCTTCCACGCCGNCGGCCTCT ] [+] EMBL AU162277 [ AATCCGATTCAGAAGTAGAGCGAGCGGCGGCTGCGGCGATGGCGGTGGCGGCGGTGCGGGCGGCGGCGGCGGACGCGGCGGTGACGTTCCTGTGGGTGCTGTGCGTGTCGACGCTGGGGGCGTCGACG GCGGCGGTGACGTCGTACCTCCGCATCCACGAGGGGATCCACTACGCGCTCCTCGTCACCGTCTCCCTCCTCTCCGTGCTCCTCTTCGCCTTCAACCTCCTCTGCGACGCCCTCGGCGGCGC ] [+] EMBL AU164179 [ GATTCAGAAGTAGAGCGAGCGGCGGCTGCGGCGATGGCGGTGGCGGCGGTGCGGGCGGCGGCGGCGGACGCGGCGGTGACGTTCCTGTGGGTGCTGTGCGTGTCGACGCTGGGGGCGTCGACGNGCGGCGGTGACGTCGTACCTCCGCATCCACGAGGGGATCCACTACGCGCTCCTCGTCACCGTCTCCCTCCTCTCCGTGCTCCTCTTCGCCTTCAACCTCCTCTGCNACGNCCTCGG GGCG CAGC TTCAACCCCACCGNCCTCGCCGC ] [+] EMBL AU164180 [ GATTCAGAAGTAGAGCGAGCGGCGGCTGCGGCGATGGCGGTGGCGGCGGTGCGGGCGGCGGCGGCGGACGCGGCGGTGACGTTCCTGTGGGTGCTGTGCGTGTCGACGCTGGGGGCGTCGACG GCGGCGGTGACGTCGTACCTCCGCATCCACGAGGGGATCCACTACGCGCTCCTCGTCANCGTCTCCCTCCTCTCCGTGCTCCTCTTCGNCTTCAACCTNCTCTNCGACGGCCTCGGGGGCGCAAGCTTTCAACCCCACCGGCCTCGCCGgc ] [+] EMBL C99574 [ TCATCGTACAAGGGGCCCCGTAATCCCATCGTCAAGACCTGGATGCTCTCCATCTCCACCGTTTGCCTCGTCCTCACCGGCGCTGCCTACACTGGCCCATCCATGAACCCTGCCAATGCGTTTGGCTGGGCATATGTGNACAATCGCCACAACACATGGGNGCAATTCTACGTCTACTGGATATGCCCTTTTGTTGGCGCTGTTCTTGCTGCCTGGGTCTTNCAGGGCCGTGTTCCCACCACCGGCACCTAAACCTAAGGCCAAGAAAGCATGAGGAAATCAAGCACAAACTTCAACTCAGGAGTTGGTACAGATGTTGGGTTTGAAGAACCCAACATTATTTATTAGCTAGAATGGTACAAGGAATAATCCTTTCCACCATATTTAATTCAAAGTAATTTAGGTAATTAGCTTCGGAACACTGACAAACCCAAGAGCATGCACATTAATTTGATTGGACGACCTGAATGTAATTTCAATCATTCATTGGTCTTGTTTGCTCTTGAACTGGTGGATGGTATGAATGGATATTATAAATTTATCAGTAAAAA A ] [+] EMBL AU092450 [ CCTACACTGGCCCATCCATGAACCCTGCCAATGCGTTTGGCTGGGCATATNTGAACAATCGCCACAACACATGGGAGCAATTCTACGTCTACTGGATATNCCCTTTTGTTGGCGCTGTTCTTGCTGCCTGGGTCTT CAGGGCCGTGTTCCCACCACCGGCACCTAAACCTAAGGCCAAGAAAGCATGAGGAAATCAAGCACAAACTTCAACTCAGGAGTTGGTACAGATGTTGGGTTTGAAGAACCCAACATTATTTATTAGCTAGAATGGTACAAGGAATAATCCTTTCCACCATATTTAATTCAAAGTAATTTAGGTAATTAGCTTCGGAACACTGACAAACCCAAGAGCATGCACATTAATTTGATTGGACGACCTGAATGTAATTTCAATCATTCATTGGTCTTGTTTGCTCTTGAACTGGTGGATGGTATGAATGGATATTATAAATTTATCAGTAAAAA ] [+] EMBL AU068197 [ CATGGGAGCAATTCTACGTCTACTGGATATGCCCTTTTGTTGGCGCTGTTCTTGCTGCCTGGGTCTT CAGGGCCGTGTTCCCACCACCGGCACCTAAACCTAAGGCCAAGAAAGCATGAGGAAATCAAGCACAAACTTCAACTCAGGAGTTGGTACAGATGTTGGGTTTGAAGAACCCAACATTATTTATTAGCTAGAATGGTACAAGGAATAATCCTTTCCACCATATTTAATTCAAAGTAATTTAGGTAATTAGCTTCGGAACACTGACAAACCCAAGAGCATGCACATTAATTTGATTGGACGACCTGAATGTAATTTCAATCATTCATTGGTCTTGTTTGCTCTTGAACTGGTGGATGGTATGAATGGATATTATAAATTTATCAGTAATTAGTTTGTGAAAAAAAAAAAAAA ] [+] EMBL AU166053 [ TTTTGTTGGCGCTGTTCTTGCTGCCTGGGTCTT CAGGGCCGTGTTCCCACCACCGGCACCTAAACCTAAGGCCAAGAAAGCATGAGGAAATCAAGCNCAAACTTCAACTCAGGAGTTGGTACANATGTTGGGTTTGAAGAACCCAACATTATTTATTAGCTAGAATGGTACAAGGAATAATCCTTTCCNCCATATTTAATTCAAAGTAATTTAGGTAATTAGCTTCGGAACACTGACAAACCCAAGAGCATGCNCATTAATTTGATTGGACGACCTGAATGTAATTTCAATCATTCATTGGTCTTGTTTGCTCTTGAACTGGTGGATGGTATGAATGGATATTATAAATTTATCAGTAAAAA AAAAAAAAAAAAAAAaaaaaa ] consensusID : consensus_15152#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1153 fasta sequence [TAGGAGCGTAGCTATATCGATAGAAAGGCGCCGCGCGTGCTCCTCCTCCTCCTCCGATTCCAATCCAATCCAATCCGATTCAGAAGTAGAGCGAGCGGCGGCTGCGGCGATGGCGGTGGCGGCGGTGCGGGCGGCGGCGGCGGACGCGGCGGTGACGTTCCTGTGGGTGCTGTGCGTGTCGACGCTGGGGGCGTCGACGGCGGCGGTGACGTCGTACCTCCGCATCCACGAGGGGATCCACTACGCGCTCCTCGTCACCGTCTCCCTCCTCTCCGTGCTCCTCTTCGCCTTCAACCTCCTCTGCGACGCCCTCGCCGCCTTCCACGCCGCCGGCCTCTCCTCCCCCCGCCACTCCTCCCTCTTCCCCCTCGCCCTCCGCTTCCCCGCCCAGGCCGCGGGTGCGGTGGGTGGGGCGATGGCGATCTCGGAGCTGATGCCGGAGCAGTACAA-GCACATGCTC-GGGGGGCCATC-GCTCAAGGTGGATCTCCACACGGGTGCCGCCGCC-GAGCTGGTGCTCACCTTCGTCATCACCTTGGCCGTGCTCTGGATCATCGTCAAGGGGCCCCGTAATCCCATCGTCAAGACCTGGATGCTCTCCATCTCCACCGTTTGCCTCGTCCTCACCGGCGCTGCCTACACTGGCCCATCCATGAACCCTGCCAATGCGTTTGGCTGGGCATATGTGAACAATCGCCACAACACATGGGAGCAATTCTACGTCTACTGGATATGCCCTTTTGTTGGCGCTGTTCTTGCTG-CCTGGGTCTTCAGGGCCGTGTTCCCACCACCGGCACCTAAACCTAAGGCCAAGAAAGCATGAGGAAATCAAGCACAAACTTCAACTCAGGAGTTGGTACAGATGTTGGGTTTGAAGAACCCAACATTATTTATTAGCTAGAATGGTACAAGGAATAATCCTTTCCACCATATTTAATTCAAAGTAATTTAGGTAATTAGCTTCGGAACACTGACAAACCCAAGAGCATGCACATTAATTTGATTGGACGACCTGAATGTAATTTCAATCATTCATT-GGTCTTG-TTTGC-TCTTGAACTGGTGGATGGTATGAATGGATATTATAAATTTATCAGTAATTAGTTTGTGTGTTCTTGTATTCTCTACAAAAAAAAAAAAAAAAAATAAAAAAAAAAAA] [+] EMBL AK106173 [TAGGAGCGTAGCTATATCGATAGAAAGGCGCCGCGCGTGCTCCTCCTCCTCCTCCGATTCCAATCCAATCCAATCCGATTCAGAAGTAGAGCGAGCGGCGGCTGCGGCGATGGCGGTGGCGGCGGTGCGGGCGGCGGCGGCGGACGCGGCGGTGACGTTCCTGTGGGTGCTGTGCGTGTCGACGCTGGGGGCGTCGACGGCGGCGGTGACGTCGTACCTCCGCATCCACGAGGGGATCCACTACGCGCTCCTCGTCACCGTCTCCCTCCTCTCCGTGCTCCTCTTCGCCTTCAACCTCCTCTGCGACGCCCTCGCCGCCTTCCACGCCGCCGGCCTCTCCTCCCCCCGCCACTCCTCCCTCTTCCCCCTCGCCCTCCGCTTCCCCGCCCAGGCCGCGGGTGCGGTGGGTGGGGCGATGGCGATCTCGGAGCTGATGCCGGAGCAGTACAA GCACATGCTC GGGGGGCCATC GCTCAAGGTGGATCTCCACACGGGTGCCGCCGCC GAGCTGGTGCTCACCTTCGTCATCACCTTGGCCGTGCTCTGGATCATCGTCAAGGGGCCCCGTAATCCCATCGTCAAGACCTGGATGCTCTCCATCTCCACCGTTTGCCTCGTCCTCACCGGCGCTGCCTACACTGGCCCATCCATGAACCCTGCCAATGCGTTTGGCTGGGCATATGTGAACAATCGCCACAACACATGGGAGCAATTCTACGTCTACTGGATATGCCCTTTTGTTGGCGCTGTTCTTGCTG CCTGGGTCTTCAGGGCCGTGTTCCCACCACCGGCACCTAAACCTAAGGCCAAGAAAGCATGAGGAAATCAAGCACAAACTTCAACTCAGGAGTTGGTACAGATGTTGGGTTTGAAGAACCCAACATTATTTATTAGCTAGAATGGTACAAGGAATAATCCTTTCCACCATATTTAATTCAAAGTAATTTAGGTAATTAGCTTCGGAACACTGACAAACCCAAGAGCATGCACATTAATTTGATTGGACGACCTGAATGTAATTTCAATCATTCATT GGTCTTG TTTGC TCTTGAACTGGTGGATGGTATGAATGGATATTATAAATTTATCAGTAATTAGTTTGT ] [-] EMBL CB672069 [ GCCGCGGGTGCGGTGGGTGGGGCGATGGCGATCTCGGAGCTGATGCCGGAGCAGTACAA GCACATGCTC GGGGGGCCATC GCTCAAGGTGGATCTCCACACGGGTGCCGCCGCC GAGCTGGTGCTCACCTTCGTCATCACCTTGGCCGTGCTCTGGATCATCGTCAAGGGGCCCCGTAATCCCATCGTCAAGACCTGGATGCTCTCCATCTCCACCGTTTGCCTCGTCCTCACCGGCGCTGCCTACACTGGCCCATCCATGAACCCTGCCAATGCGTTTGGCTGGGCATATGTGAACAATCGCCACAACACATGGGAGCAATTCTACGTCTACTGGATATGCCCTTTTGTTGGCGCTGTTCTTGCTG CCTGGGTCTTCAGGGCCGTGTTCCCACCACCGGCACCTAAACCTAAGGCCAAGAAAGCATGAGGAAATCAAGCACAAACTTCAACTCAGGAGTTGGTACAGATGTTGGGTTTGAAGAACCCAACATTATTTATTAGCTAGAATGGTACAAGGAATAATCCTTTCCACCATATTTAATTCAAAGTAATTTAGGTAATTAGCTTCGGAACACTGACAAACCCAAGAGCATGCACATTAATTTGATTGGACGACCTGAATGTAATTTCAATCATTCATT G ] [-] EMBL CA753083 [ GAGGTGAGGCCGGAGCAGTACAAGGAACATGCTCGGGGGGGCCATCGGTTCAAGGTGGATCTCCACACGGGTGCCGCCGCCGGAGCTGGTGCTCACCTTCGTCATCACATTGGCGGTGTTTTGGATCATGGTCAAGGGGCCCCGTAATCCCATCGTCAAGACCTGAAGGTTCTCCATTTCCACCGTTGGCCTCGTCCTCACCGGCGCTGCCTACACTGGCCCATCCATGAACCCTGCCAATGCGTTTGGCTGGGCATATGTGAACAATCGCCACAACACATGGGAGCAATTCTACGTCTACTGGATATGCCCTTTTGTTGGCGCTGTTCTTGCTG CCTGGGTCTTCAGGGCCGTGTTCCCACCACCGGCACCTAAACCTAAGGCCAAGAAAGCATGAGGAAATCAAGCACAAACTTCAACTCAGGAGTTGGTACAGATGTTGGGTTTGAAGAACCCAACATTATTTATTAGCTAGAATGGTACAAGGAATAATCCTTTCCACCATATTTAATTCAAAGTAATTTAGGTAATTAGCTTCGGAACACTGACAAACCCAAGAGCATGCACATTAATTTGATTGGACGACCTCAATGTAATTTCAATCATTCATT GGTCTTG TTTGC TCTTGAACTGGTGGATGG ] [+] EMBL AU182622 [ CCGGCGCTGCCTACACTGGCCCATCCATGAACCCTGCCAATGCGTTTGGCTGGGCATATGTGAACAATCGCCACAACACATGGGAGCAATTCTACGTCTACTGGATATGCCCTTTTGTTGGCGCTGTTCTTGCTG CCTGGGTCTTCAGGGCCGTGTTCCCACCACCGGCACCTAAACCTAAGGCCAAGAAAGCATGAGGAAATCAAGCACAAACTTCAACTCAGGAGTTGGTACAGATGTTGGGTTTGAAGAACCCAACATTATTTATTAGCTAGAATGGTACAAGGAATAATCCTTTCCACCATATTTAATTCAAAGTAATTTAGGTAATTAGCTTCGGAACACTGACAAACCCAAGAGCATGCACATTAATTTGATTGGACGACCTGAATGTAATTTCAATCATTCATT GGTaaaa aaaaa ] [-] EMBL BE530904 [ TCCATGAACCCTGCCAATGCGTTTGGCTGGGCATATGTGAACAATCGCCACAACACATGGGAGCAATTCTACGTCTACTGGATATGCCCTTTTGTTGGCGCTGTTCTTGCTG CCTGGGTCTTCAGGGCCGTGTTCCCACCACCGGCACCTAAACCTAAGGCCAAGAAAGCATGAGGAAATCAAGCACAAACTTCAACTCAGGAGTTGGTACAGATGTTGGGTTTGAAGAACCCAACATTATTTATTAGCTAGAATGGTACAAGGAATAATCCTTTCCACCATATTTAATTCAAAGTAATTTAGGTAATTAGCTTCGGAACACTGACAAACCCAAGAGCATGCACATTAATTTGATTGGACGACCTCAATGTAATTTCAATCATTCATT GGTCTTG TTTGC TCTTGAACTGG ] [+] EMBL AU029632 [ TTTGGCTGGGCATATGTGAACAATCGCCACAACACATGGGAGCAATTCTACGTCTACTGGATATGCCCTTTTGTTGGCGCTGTTCTTGCTGCCCTGGGTCTTCAGGGCCGTGTTCCCACCACCGGCACCTAAACCTAAGGCCAAGAAAGCATGAGGAAATCAAGCACAAACTTCAACTCAGGAGTTGGTACAGATGTTGGGTTTGAAGAACCCAACATTATTTATTAGCTAGAATGGTACAAGGAATAATCCTTTCCACCATATTTAATTCAAAGTAATTTAGGTAATTAGCTTCGGAACACTGACAAACCCAAGAGCATGCACATTAATTTGATTGGACGACCTGAATGTAATTTCAATCATTCATT GGTCTTG TTTGC TCTTGAACTGGTGGATGGTATGAATGGATATTATAAATTTATCAGTAATTAGTTTGTGTGTTCTTGTATTCTCTACAAAAAAAAAAAAAAAAAATAAAAAAAAAAAA] [+] EMBL C74300 [ CTTTTGTTGGCGCTGTTCTTGCTG CCTGGGTCTTCAGGGCCGTGTTCCCACCACCGGCACCTAAACCTAAGGCCAAGAAAGCATGAGGAAATCAAGCACAAACTTCAACTCAGGAGTTGGTACAGATGTTGGGTTTGAAGAACCCAACATTATTTATTAGCTAGAATGGTACAAGGAATAATCCTTTCCACCATATTTAATTCAAAGTAATTTAGGTAATTAGCTTCGGAACACTGACAAACCCAAGAGCATGCACATTAATTTGATTGGACGACCTGAATGTAATTTCAATCATTCATTGGGTCTTGTTTTGCNCCTTGAACTGGTGGgat ] consensusID : consensus_15152#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 183 fasta sequence [CGANTTGCGGTTGCGGCGGTNCGGGCNGCGGCGGCGGACGGGCGGTTTTACGTTCCTGTGGGTGCTGTGCGTNTCGACGTGGGGGCCANGTCGGCGGTGACGTCGTACCTCCGCATCCACGAGGGGATCCACTACGCGCTCCTCGTCACCGTCTCCCTCCTCTCCGTGCTCCTCTTCGCCTTC] [+] EMBL C27030 [CGANTTGCGGTTGCGGCGGTNCGGGCNGCGGCGGCGGACGGGCGGTTTTACGTTCCTGTGGGTGCTGTGCGTNTCGACGTGGGGGCCANGTCGGCGGTGACGTCGTACCTCCGCATCCACGAGGGGATCCACTACGCGCTCCTCGTCACCGTCTCCCTCCTCTCCGTGCTCCTCTTCGCCTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15152#0 TTCCTCGAGCACTGTTGGCCTACTGGATATCGATAGAAAGGCGCCGCGCGTGCTCCTCCT 60 consensus_15152#1 ------------TAGGAGCGTAGCT-ATATCGATAGAAAGGCGCCGCGCGTGCTCCTCCT 47 consensus_15152#2 ------------------------------------------------------------ consensus_15152#0 CCTCCTCCTCCGATTCCAATCCAATCCAATCCGATTCAGAAGTAGAGCGAGCGGCGGCTG 120 consensus_15152#1 CCTCCT---CCGATTCCAATCCAATCCAATCCGATTCAGAAGTAGAGCGAGCGGCGGCTG 104 consensus_15152#2 ------------------------------------------------------------ consensus_15152#0 CGGCGATGGCGGTGGCGGCGGTGCGGGCGGCGGCGGCGGACGCGGCGGTG--ACGTTCCT 178 consensus_15152#1 CGGCGATGGCGGTGGCGGCGGTGCGGGCGGCGGCGGCGGACGCGGCGGTG--ACGTTCCT 162 consensus_15152#2 --CGANTTGCGGTTGCGGCGGTNCGGGCNGCGGCGGCGGACG-GGCGGTTTTACGTTCCT 57 * ***** ******** ***** ************* ****** ******** consensus_15152#0 GTGGGTGCTGTGCGTGTCGACGCTGGGGGCGTCGACGGCGGCGGTGACGTCGTACCTCCG 238 consensus_15152#1 GTGGGTGCTGTGCGTGTCGACGCTGGGGGCGTCGACGGCGGCGGTGACGTCGTACCTCCG 222 consensus_15152#2 GTGGGTGCTGTGCGTNTCGACGTGGGGGCC----ANGTCGGCGGTGACGTCGTACCTCCG 113 *************** ****** **** * * * ********************** consensus_15152#0 CATCCACGAGGGGATCCACTACGCGCTCCTCGTCACCGTCTCCCTCCTCTCCGTGCTCCT 298 consensus_15152#1 CATCCACGAGGGGATCCACTACGCGCTCCTCGTCACCGTCTCCCTCCTCTCCGTGCTCCT 282 consensus_15152#2 CATCCACGAGGGGATCCACTACGCGCTCCTCGTCACCGTCTCCCTCCTCTCCGTGCTCCT 173 ************************************************************ consensus_15152#0 CTTCGCCTTCAACCTCCTCTGCGACGCCCTCGGCGGCGCCAGCTTCAACCCCACCGCCCT 358 consensus_15152#1 CTTCGCCTTCAACCTCCTCTGCGACGCCCTCG---------------------------- 314 consensus_15152#2 CTTCGCCTTC-------------------------------------------------- 183 ********** consensus_15152#0 CGCCGCCTTCCACGCCGCCGGCCTCTCCTCCCCCCGCCACTCCTCCCTCTTCCCCCTCGC 418 consensus_15152#1 --CCGCCTTCCACGCCGCCGGCCTCTCCTCCCCCCGCCACTCCTCCCTCTTCCCCCTCGC 372 consensus_15152#2 ------------------------------------------------------------ consensus_15152#0 CCTCCGCTTCCCCGCCCAGGCCGCGGGTGCGGTGGGTGGGGCGATGGCGATCTCGGAGCT 478 consensus_15152#1 CCTCCGCTTCCCCGCCCAGGCCGCGGGTGCGGTGGGTGGGGCGATGGCGATCTCGGAGCT 432 consensus_15152#2 ------------------------------------------------------------ consensus_15152#0 GATGCCGGAGCAGTACAAGCACATGCTCGGGGGGCCATCGCTCAAGGTGGATCTCCACAC 538 consensus_15152#1 GATGCCGGAGCAGTACAAGCACATGCTCGGGGGGCCATCGCTCAAGGTGGATCTCCACAC 492 consensus_15152#2 ------------------------------------------------------------ consensus_15152#0 GGGTGCCGCCGCCGAGCTGGTGCTCACCTTCGTCATCACCTTGGCCGTGCTCTGGATCAT 598 consensus_15152#1 GGGTGCCGCCGCCGAGCTGGTGCTCACCTTCGTCATCACCTTGGCCGTGCTCTGGATCAT 552 consensus_15152#2 ------------------------------------------------------------ consensus_15152#0 CGTCAAGGGGCCCCGTAATCCCATCGTCAAGACCTGGATGCTCTCCATCTCCACCGTTTG 658 consensus_15152#1 CGTCAAGGGGCCCCGTAATCCCATCGTCAAGACCTGGATGCTCTCCATCTCCACCGTTTG 612 consensus_15152#2 ------------------------------------------------------------ consensus_15152#0 CCTCGTCCTCACCGGCGCTGCCTACACTGGCCCATCCATGAACCCTGCCAATGCGTTTGG 718 consensus_15152#1 CCTCGTCCTCACCGGCGCTGCCTACACTGGCCCATCCATGAACCCTGCCAATGCGTTTGG 672 consensus_15152#2 ------------------------------------------------------------ consensus_15152#0 CTGGGCATATGTGAACAATCGCCACAACACATGGGAGCAATTCTACGTCTACTGGATATG 778 consensus_15152#1 CTGGGCATATGTGAACAATCGCCACAACACATGGGAGCAATTCTACGTCTACTGGATATG 732 consensus_15152#2 ------------------------------------------------------------ consensus_15152#0 CCCTTTTGTTGGCGCTGTTCTTGCTGCCTGGGTCTTCAGGGCCGTGTTCCCACCACCGGC 838 consensus_15152#1 CCCTTTTGTTGGCGCTGTTCTTGCTGCCTGGGTCTTCAGGGCCGTGTTCCCACCACCGGC 792 consensus_15152#2 ------------------------------------------------------------ consensus_15152#0 ACCTAAACCTAAGGCCAAGAAAGCATGAGGAAATCAAGCACAAACTTCAACTCAGGAGTT 898 consensus_15152#1 ACCTAAACCTAAGGCCAAGAAAGCATGAGGAAATCAAGCACAAACTTCAACTCAGGAGTT 852 consensus_15152#2 ------------------------------------------------------------ consensus_15152#0 GGTACAGATGTTGGGTTTGAAGAACCCAACATTATTTATTAGCTAGAATGGTACAAGGAA 958 consensus_15152#1 GGTACAGATGTTGGGTTTGAAGAACCCAACATTATTTATTAGCTAGAATGGTACAAGGAA 912 consensus_15152#2 ------------------------------------------------------------ consensus_15152#0 TAATCCTTTCCACCATATTTAATTCAAAGTAATTTAGGTAATTAGCTTCGGAACACTGAC 1018 consensus_15152#1 TAATCCTTTCCACCATATTTAATTCAAAGTAATTTAGGTAATTAGCTTCGGAACACTGAC 972 consensus_15152#2 ------------------------------------------------------------ consensus_15152#0 AAACCCAAGAGCATGCACATTAATTTGATTGGACGACCTGAATGTAATTTCAATCATTCA 1078 consensus_15152#1 AAACCCAAGAGCATGCACATTAATTTGATTGGACGACCTGAATGTAATTTCAATCATTCA 1032 consensus_15152#2 ------------------------------------------------------------ consensus_15152#0 TTGGTCTTGTTTGCTCTTGAACTGGTGGATGGTATGAATGGATATTATAAATTTATCAGT 1138 consensus_15152#1 TTGGTCTTGTTTGCTCTTGAACTGGTGGATGGTATGAATGGATATTATAAATTTATCAGT 1092 consensus_15152#2 ------------------------------------------------------------ consensus_15152#0 AAAAAAAAAAAAAAAAAAAAGGCCACATGTGCTCGAGCTGCAGGTCGCGGCCGCTAGAC- 1197 consensus_15152#1 AATTAGTTTGTGTGTTCTTGTATTCTCTACAAAAAAAAAAAAAAAAAATAAAAAAAAAAA 1152 consensus_15152#2 ------------------------------------------------------------ consensus_15152#0 - consensus_15152#1 A 1153 consensus_15152#2 - |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||