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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15153#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 14 consensus length = 1319 fasta sequence
[CTTGCTTAGCTCGATTGCTTTGCTCTGATCTGGTTGATCGATCTCGTCGTCGGCGATGGAGAAGTTGCTTTCCTCCTCCGGCGCCGCCGCCGCCGTGGCGTCGCAGGGCCAGCTCCCGGACTGCTTCGTGTTCCCGGCCGACCGGCGCCCACCGGCCTCCACCGCGGCCGTGTCGCTCCCCGTCATCGACCTCTCCGGCCCCCGCGACGCCGTCCGCCGCGCCGTCCTCGACGCCGGCAAGGAGCTCGGCTTCTTCCAGGTGGTGAACCACGGCGTGCCGCCGGAGACGATGCGGGAGATGGCGGCGGTGTGCGAGGAGTTCTTCCGGCTGCCGGCGGAGGACAAGGCGGCGTTCTACTCCGACGCGGAGGAGAACCCCAACCGCCTCTTCTCCAGCACCATCTACGAGGTCGGCGACCAGCGCTACTGGCGCGACTGCCTCCGCCTCGCCTGCGGCTTCCCCGTCGCCGACGACACCAACACCCACTGGCCCGACAAGCCCCACCATCTCCGGGATGTCACGGAGAAGTTCTTCGTGGCGACGAGGGGATTGGGGATCGAGCTGCTGCGGCTGCTGTGCGAGGGGATGGGGCTCAGGCCGGACTACTTCGAGCGCGACCTCACCGCCGGCGATGTCATCATCAACGTCAACCACTACCCTCCATGCCCGGATCCGAGCCTGACGCTGGGCTTGCCGCCGCACTGCGACCGCAACCTCATCACCCTGCTCCTCCAGGGCGACGTCTTCGGCCTCCAGGTCTCCTACAATGGCGACTGGATCAACGTCGACCCCGTCCCCGACGCC-TTCGTCGTCAACTTTGGCCACCTCCTCGAGATTGCGACGAACGGAGTGCTGAAGAGCATCGAGCACAGGGCGATGACGAACTCGGCGGTGGCGAGGACGTCGGTGGCGACGTTCATGATGCCGCCGATGGACTGCCTCGTCGGACCGGCGAAGGAGCTCGTCGGAGACGGCGGCCAGCCGCAGTATCGCACCGTCACGTTCCGCGAGTTCATGCGCATCTACAAGACCGTCGGCGCGCGCCGCGACAGCGTCGAGAAGGCCTTCAAAATCTGATCCTGACAGCG-GCCGCCATGGGGGAATATGTGTATCTGTTACAGTAATTTACGAAGATGAAGCTGATTATTAGCAACCGATAAGTGTTTCATCAGCAATTATATATGTTGTTGATGTACTGATTATATGTACATCGATGTAACTGTACCTGTAACACCCTCAAGAACCTTTAAAAATCTATAAATCTAAATAAAATGTTCAAATGGATTTGATGCAAAAAAGCTATAAGCAAAGTTCAAAA]
[+] EMBL AK121818 [CTTGCTTAGCTCGATTGCTTTGCTCTGATCTGGTTGATCGATCTCGTCGTCGGCGATGGAGAAGTTGCTTTCCTCCTCCGGCGCCGCCGCCGCCGTGGCGTCGCAGGGCCAGCTCCCGGACTGCTTCGTGTTCCCGGCCGACCGGCGCCCACCGGCCTCCACCGCGGCCGTGTCGCTCCCCGTCATCGACCTCTCCGGCCCCCGCGACGCCGTCCGCCGCGCCGTCCTCGACGCCGGCAAGGAGCTCGGCTTCTTCCAGGTGGTGAACCACGGCGTGCCGCCGGAGACGATGCGGGAGATGGCGGCGGTGTGCGAGGAGTTCTTCCGGCTGCCGGCGGAGGACAAGGCGGCGTTCTACT CGACGCGGAGGAGAACCCCAACCGCCTCTTCTCCAGCACCATCTACGAGGTCGGCGACCAGCGCTACTGGCGCGACTGCCTCCGCCTCGCCTGCGGCTTCCCCGTCGCCGACGACACCAACACCCACTGGCCCGACAAGCCCCACCATCTCCGGGATGTCACGGAGAAGTTCTTCGTGGCGACGAGGGGATTGGGGATCGAGCTGCTGCGGCTGCTGTGCGAGGGGATGGGGCTCAGGCCGGACTACTTCGAGCGCGACCTCACCGCCGGCGATGTCATCATCAACGTCAACCACTACCCTCCATGCCCGGATCCGAGCCTGACGCTGGGCTTGCCGCCGCACTGCGACCGCAACCTCATCACCCTGCTCCTCCAGGGCGACGTCTTCGGCCTCCAGGTCTCCTACAATGGCGACTGGATCAACGTCGACCCCGTCCCCGACGCC TTCGTCGTCAACTTTGGCCACCTCCTCGAGATTGCGACGAACGGAGTGCTGAAGAGCATCGAGCACAGGGCGATGACGAACTCGGCGGTGGCGAGGACGTCGGTGGCGACGTTCATGATGCCGCCGATGGACTGCCTCGTCGGACCGGCGAAGGAGCTCGTCGGAGACGGCGGCCAGCCGCAGTATCGCACCGTCACGTTCCGCGAGTTCATGCGCATCTACAAGACCGTCGGCGCGCGCCGCGACAGCGTCGAGAAGGCCTTCAAAATCTGATCCTGACAGCG GCCGCCATGGGGGAATATGTGTATCTGTTACAGTAATTTACGAAGATGAAGCTGATTATTAGCAACCGATAAGTGTTTCATCAGCAATTATATATGTTGTTGATGTACTGATTATATGTACATCGATGTAACTGTACCTGTAACACCCTCAAGAACCTTTAAAAATCTATAAATCTAAATAAAATGTTCAAATG ]
[+] EMBL AK060318 [ CTTAGCTCGATTGCTTTGCTCTGATCTGGTTGATCGATCTCGTCGTCGGCGATGGAGAAGTTGCTTTCCTCCTCCGGCGCCGCCGCCGCCGTGGCGTCGCAGGGCCAGCTCCCGGACTGCTTCGTGTTCCCGGCCGACCGGCGCCCACCGGCCTCCACCGCGGCCGTGTCGCTCCCCGTCATCGACCTCTCCGGCCCCCGCGACGCCGTCCGCCGCGCCGTCCTCGACGCCGGCAAGGAGCTCGGCTTCTTCCAGGTGGTGAACCACGGCGTGCCGCCGGAGACGATGCGGGAGATGGCGGCGGTGTGCGAGGAGTTCTTCCGGCTGCCGGCGGAGGACAAGGCGGCGTTCTACTCCGACGCGGAGGAGAACCCCAACCGCCTCTTCTCCAGCACCATCTACGAGGTCGGCGACCAGCGCTACTGGCGCGACTGCCTCCGCCTCGCCTGCGGCTTCCCCGTCGCCGACGACACCAACACCCACTGGCCCGACAAGCCCCACCATCTCCGGGATGTCACGGAGAAGTTCTTCGTGGCGACGAGGGGATTGGGGATCGAGCTGCTGCGGCTGCTGTGCGAGGGGATGGGGCTCAGGCCGGACTACTTCGAGCGCGACCTCACCGCCGGCGATGTCATCATCAACGTCAACCACTACCCTCCATGCCCGGATCCGAGCCTGACGCTGGGCTTGCCGCCGCACTGCGACCGCAACCTCATCACCCTGCTCCTCCAGGGCGACGTCTTCGGCCTCCAGGTCTCCTACAATGGCGACTGGATCAACGTCGACCCCGTCCCCGACGCC TTCGTCGTCAACTTTGGCCACCTCCTCGAGATTGCGACGAACGGAGTGCTGAAGAGCATCGAGCACAGGGCGATGACGAACTCGGCGGTGGCGAGGACGTCGGTGGCGACGTTCATGATGCCGCCGATGGACTGCCTCGTCGGACCGGCGAAGGAGCTCGTCGGAGACGGCGGCCAGCCGCAGTATCGCACCGTCACGTTCCGCGAGTTCATGCGCATCTACAAGACCGTCGGCGCGCGCCGCGACAGCGTCGAGAAGGCCTTCAAAATCTGATCCTGACAGCG GCCGCCATGGGGGAATATGTGTATCTGTTACAGTAATTTACGAAGATGAAGCTGATTATTAGCAACCGATAAGTGTTTCATCAGCAATTATATATGTTGTTGATGTACTGATTATATGTACATCGATGTAACTGTACCTGTAACACCCTCAAGAACCTTTAAAAATCTATAAATCTAAATAAAATGTTCAAATG ]
[+] EMBL OSC29222 [ CTTTGCTCTGATCTGGTTGATCGATCTCGTCGTCGGCGATGGAGAAGTTGCTTTCCTCCTCCGGNGCCGCC CCGCCGTGGCGTCGCAGGGCCAGCTCCCGGACTGCTTCGTGTTCCCGGCCGACCGNCGCCCACCGGCCTCCACCGNGNCCGTGTCGNTCCCCGTNATCGACCTCTCCGGCCCNCACNACGTCG ]
[+] EMBL CB661729 [ TGCTCTGATCTGGTTGATCGATCTCGTCGTCGGCGATGGAGAAGTTGCTTTCCTCCTCCGGCGCCGCCGCCGCCGTGGCGTCGCAGGGCCAGCTCCCGGACTGCTTCGTGTTCCCGGCCGACCGGCGCCCACCGGCCTCCACCGCGGCCGTGTCGCTCCCCGTCATCGACCTCTCCGGCCCCCGCGACGCCGTCCGCCGCGCCGTCCTCGACGCCGGCAAGGAGCTCGGCTTCTTCCAGGTGGTGAACCACGGCGTGCCGCCGGAGACGATGCGGGAGATGGCGGCGGTGTGCGAGGAGTTCTTCCGGCTGCCGGCGGAGGACAAGGCGGCGTTCTACTCCGACGCGGAGGAGAACCCCAACCGCCTCTTCTCCAGCACCATCTACGAGGTCGGCGACCAGCGCTACTGGCGCGACTGCCTCCGCCTCGCCTGCGGCTTCCCCGTCGCCGACGACACCAACACCCACTGGCCCGACAAGCCCCACCATCTCCGGGATGTCACGGAGAAGTTCTTCGTGGCGACGAGGGGATTGGGGATCGAGCTGCTGCGGCTGCTGTGCGAGGGGATGGGGCTCAGGCCGGACTACTTCGAGCGCGACCTCACCGCCGGCGATGTCATCATCAACGTCAACCACTACCCTCCATGCCCGGATCCGAGCCTGACGCTGGGCTTGCCGCCGCACTGCGACCGCAACCTCATCACCCTGCTCCTCCAGGGCGACGTCTTCGGCCTCCAGGTCTCCTACAATGGCGACTGG ]
[+] EMBL CB671507 [ GATCTGGTTGATCGATCTCGTCGTCGGCGATGGAGAAGTTGCTTTCCTCCTCCGGCGCCGCCGCCGCCGTGGCGTCGCAGGGCCAGCTCCCGGACTGCTTCGTGTTCCCGGCCGACCGGCGCCCACCGGCCTCCACCGCGGCCGTGTCGCTCCCCGTCATCGACCTCTCCGGCCCCCGCGACGCCGTCCGCCGCGCCGTCCTCGACGCCGGCAAGGAGCTCGGCTTCTTCCAGGTGGTGAACCACGGCGTGCCGCCGGAGACGATGCGGGAGATGGCGGCGGTGTGCGAGGAGTTCTTCCGGCTGCCGGCGGAGGACAAGGCGGCGTTCTACTCCGACGCGGAGGAGAACCCCAACCGCCTCTTCTCCAGCACCATCTACGAGGTCGGCGACCAGCGCTACTGGCGCGACTGCCTCCGCCTCGCCTGCGGCTTCCCCGTCGCCGACGACACCAACACCCACTGGCCCGACAAGCCCCACCATCTCCGGGATGTCACGGAGAAGTTCTTCGTGGCGACGAGGGGATTGGGGATCGAGCTGCTGCGGCTGCTGTGCGAGGGGATGGGGCTCAGGCCGGACTACTTCGAGCGCGACCTCACCGCCGGCGATGTCATCATCAACGTCAACCACTACCCTCCATGCCCGGATCCGAGCCTGACGCTGGGCTTGCCGCCGCACTGCGACCGCAACCTCATCACCCTGCTCCTCCAGGGCGACGTCTTCGGCCTCCAGGTCTCCTACAATGGCGACTGGATCAACGTCGACCCCGTCCC ]
[+] EMBL CB641601 [ GGTTGATCGATCTCGTCGTCGGCGATGGAGAAGTTGCTTTCCTCCTCCGGCGCCGCCGCCGCCGTGGCGTCGCAGGGCCAGCTCCCGGACTGCTTCGTGTTCCCGGCCGACCGGCGCCCACCGGCCTCCACCGCGGCCGTGTCGCTCCCCGTCATCGACCTCTCCGGCCCCCGCGACGCCGTCCGCCGCGCCGTCCTCGACGCCGGCAAGGAGCTCGGCTTCTTCCAGGTGGTGAACCACGGCGTGCCGCCGGAGACGATGCGGGAGATGGCGGCGGTGTGCGAGGAGTTCTTCCGGCTGCCGGCGGAGGACAAGGCGGCGTTCTACTCCGACGCGGAGGAGAACCCCAACCGCCTCTTCTCCAGCACCATCTACGAGGTCGGCGACCAGCGCTACTGGCGCGACTGCCTCCGCCTCGCCTGCGGCTTCCCCGTCGCCGACGACACCAACACCCACTGGCCCGACAAGCCCCACCATCTCCGGGATGTCACGGAGAAGTTCTTCGTGGCGACGAGGGGATTGGGGATCGAGCTGCTGCGGCTGCTGTGCGAGGGGATGGGGCTCAGGCCGGACTACTTCGAGCGCGACCTCACCGCCGGCGATGTCATCATCAACGTCAACCACTACCCTCCATGCCCGGATCCGAGCCTGACGCTGGGCTTGCCGCCGCACTGCGACCGCAACCTCATCACCCTGCTCCTCCAGGGCGACGTCTTCGGCCTCCAGGTCTCCTACAATGGCGACTGGATCAACGTCGACCCCGTCCCCGACGCC TTCGTC ]
[+] EMBL CA753907 [ GTCGTCGGCGATGGAGAAGTTGCTTTCCTCCTCCGGCGCCGCCGCCGCCGTGGCGTCGCAGGGCCAGCTCCCGGACTGCTTCGTGTTCCCGGCCGACCGGCGCCCACCGGCCTCCACCGCGGCCGTGTCGCTCCCCGTCATCGACCTCTCCGGCCCCCGCGACGCCGTCCGCCGCGCCGTCCTCGACGCCGGCAAGGAGCTCGGCTTCTTCCAGGTGGTGAACCACGGCGTGCCGCCGGAGACGATGCGGGAGATGGCGGCGGTGTGCGAGGAGTTCTTCCGGCTGCCGGCGGAGGACAAGGCGGCGTTCTACTCCGACGCGGAGGAGAACCCCAACCGCCTCTTCTCCAGCACCATCTACGAGGTCGGCGACCAGCGCTACTGGCGCGACTGCCTCCGCCTCGCCTGCGGCTTCCCCGTCGCCGACGACACCAACACCCACTGGCCCGACNAGCCCCACCATCTCCGGGATGTCACGGAGAAGTTCTTCGTGGCGACGAGGGGATTGGGGATCGAGCTGCTGCGGCTGCTGTGCGAGGGGATGGGGCTCAGGCCGGACTACTTCGAGCGCGACCTCACCGCCGGCGATGTCATCATCAACG ]
[-] EMBL CB641602 [ GAAGTTCTTCGTGGCGACGAGGGGATTGGGGATCGAGCTGCTGCGGCTGCTGTGCGAGGGGATGGGGCTCAGGCCGGACTACTTCGAGCGCGACCTCACCGCCGGCGATGTCATCATCAACGTCAACCACTACCCTCCATGCCCGGATCCGAGCCTGACGCTGGGCTTGCCGCCGCACTGCGACCGCAACCTCATCACCCTGCTCCTCCAGGGCGACGTCTTCGGCCTCCAGGTCTCCTACAATGGCGACTGGATCAACGTCGACCCCGTCCCCGACGCC TTCGTCGTCAACTTTGGCCACCTCCTCGAGATTGCGACGAACGGAGTGCTGAAGAGCATCGAGCACAGGGCGATGACGAACTCGGCGGTGGCGAGGACGTCGGTGGCGACGTTCATGATGCCGCCGATGGACTGCCTCGTCGGACCGGCGAAGGAGCTCGTCGGAGACGGCGGCCAGCCGCAGTATCGCACCGTCACGTTCCGCGAGTTCATGCGCATCTACAAGACCGTCGGCGCGCGCCGCGACAGCGTCGAGAAGGCCTTCAAAATCTGATCCTGACAGCG GCCGCCATGGGGGAATATGTGTATCTGTTACAGTAATTTACGAAGATGAAGCTGATTATTAGCAACCGATAAGTGTTTCATCAGCAATTATATATGTTGTTGATGTACTGATTATATGTACATCGATGTAACTGTACCTGTAACACCCTCAAGAACCTTTAAAAATCTATAAATCTAAAT ]
[-] EMBL AU057711 [ CGACCGCAACCTCATCACCCTGCTCCTCCAGGGCGACGTCTTCGGCCTCCAGGTCTCCTACAATGGCGACTGGATCAACGTCGACCCCGTCCCCGACGCC TTCGTCGTCAACTTTGGCCACCTCCTCGAGATTGCGACGAACGGAGTGCTGAAGAGCATCGAGCACAGGGCGATGACGAACTCGGCGGTGGCGAGGACGTCGGTGGCGACGTTCATGATGCCGCCGATGGACTGCCTCGTCGGACCGGCGAAGGAGCTCGTCGGAGACGGCGGCCAGCCGCAGTATCGCACCGTCACGTTCCGCGAGTTCATGCGCATCTACAAGACCGTCGGCGCGCGCCGCGACAGCGTCGAGAAGGCCTTCAAAATCTGATC ]
[+] EMBL BI810870 [ CCACGACGCCTTTCGTCGTCAACTTTGGCCACCTCCTCGAGATTGCGACGAACGGAGTGCTGAAGAGCATCGAGCACAGGGCGATGACGAACTCGGCGGTGGCGAGGACGTCGGTGGCGACGTTCATGATGCCGCCGATGGACTGCCTCGTCGGACCGGCGAAGGAGCTCGTCGGAGACGGCGGCCAGCCGCAGTATCGCACCGTCACGTTCCGCGAGTTCATGCGCATCTACAAGACCGTCGGCGCGCGCCGCGACAGCGTCGAGAAGGCCTTCAAAATCTG ]
[-] EMBL CF311319 [ CC TTCGTCGTCAACTTTGGCCACCTCCTCGAGATTGCGACGATCGGAGTGCTCAAGAGCATCGAGCACAGGGCGATGACGAACTCGTCGGTGGCGAGTACGTCGGTGGCGACGTTCATGATGCCTCCTATGGAATGCCTCGTCGGACCGGCAAAGGAGCTTGTCGGAGTCGGCGGCCACCCGCAGTATCGCACCGTCACGTTCCGGGAGTTCATGCGCATCTACAAGACTGTCGGCGCGCACCGCGACAGCGTAGAGAAGGCCTTCAAAATCTGATCCTGACAGCGAGCCGCCATGGGGGAATATGTGTATCTGTTACAGTAATTTTGTAAGATGAAGCTGATTATTCGCAACCGATAAGTGTTTCATCAGCAATTATATATGTTGTTGATGTACTGATTATATGTTCATCGATGTAACTGTACCTGTAACACCCTCAAGAACCTTTAAAAATCTATAAATGTAAATAAAATGTTCAAATGGATTTGATGCAAAAAAa ]
[-] EMBL CF312898 [ GAACGGAGTGCTGAAGAGCATCGAGCACAGGGCGATGACGAACTCGGCGGTGGCGAGGACGTCGGNTGCGACGTTCATGATGCCGCCGATGGACTGCCTCGTCGGACCGGCGAAGGAGCTCGTCGGAGACGGCGGCCAGCCGCAGTATCGCACCGTCACGTTCCGCGAGTTCATGCGCATCTACAAGACCGTCGGCGCGCGCCGCGACAGCGTCGAGAAGGCCTTCAAAATCTGATCCTGACAGCG GCCGCCATGGGGGAATATGTGTATCTGTTACAGTAATTTACGAAGATGAAGCTGATTATTAGCAACCGATAAGTGTTTCATCAGCAATTACATATGTTGTTGATGTACTGATTATATGTACATCGATGTAACTGTACCTGTAACACCCTCAAGAACCTTTAAAAATCTATAAATCTAAATAAAATGTTCAAATGGATTTGATGCAAAAAA ]
[+] EMBL AU029825 [ ATGGGGGAATATGTGTATCTGTTACAGTAATTTACGAAGATGAAGCTGATTATTAGCAACCGATAAGTGTTTCATCAGCAATTATATATGTTGTTGATGTACTGATTATATGTACATCGATGTAACTGTACCTGTAACACCCTCAAGAACCTTTAAAAATCTATAAATCTAAATAAAATGTTCAAATGGATTTGATGCAAATTGGCTATAAGCAAAGTTCAAAA]
[+] EMBL C98991 [ AATATGTGTATCTGTTACAGTAATTTACGAAGATGAAGCTGATTATTAGCAACCGATAAGTGTTTCATCAGNAATTATATATGTTGTTGATGTACTGATTATATGTACATCGATGTAACTGTACCTGTAACACCCTCAAGAACCTTTTAAAATCTATAAATCTAAATNAAATGTTCAAATGGATTTGATGCAAATTGGCTATAAGCAAAGTTCNAAA]
consensusID : consensus_15153#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1120 fasta sequence
[TTGGTGCCGCCGGAGACGATGCGGGAGATGGCGGCGGTGTGCGAGGAGTTCTTCCGGCTGCCGGCGGAGGACAAGGCGGCGTTCTACTCCGACGCGGAGGAGAACCCCAACCGCCTCTTCTCCAGCACCATCTACGAGGTCGGCGACCAGCGCTACTGGCGCGACTGCCTCCGCCTCGCCTGCGGCTTCCCCGTCGCCGACGACACCAACACCCACTGGCCCGACAAGCCCCACCATCTCCGGTGAACCAAAAACAAAAAAAAAAATCCTCAACCAGCAGCATCAAATCACTCCCAAATCAGTTGCTGATTGGATTTAATTTGATCCTAATTGCGTTGCAAGGGATGTCACGGAGAAGTTCTTCGTGGCGACGAGGGGATTGGGGATCGAGCTGCTGCGGCTGCTGTGCGAGGGGATGGGGCTCAGGCCGGACTACTTCGAGCGCGACCTCACCGCCGGCGATGTCATCATCAACGTCAACCACTACCCTCCATGCCCGGATCCGAGCCTGACGCTGGGCTTGCCGCCGCACTGCGACCGCAACCTCATCACCCTGCTCCTCCAGGGCGACGTCTTCGGCCTCCAGGTCTCCTACAATGGCGACTGGATCAACGTCGACCCCGTCCCCGACGCCTTCGTCGTCAACTTTGGCCACCTCCTCGAGATTGCGACGAACGGAGTGCTGAAGAGCATCGAGCACAGGGCGATGACGAACTCGGCGGTGGCGAGGACGTCGGTGGCGACGTTCATGATGCCGCCGATGGACTGCCTCGTCGGACCGGCGAAGGAGCTCGTCGGAGACGGCGGCCAGCCGCAGTATCGCACCGTCACGTTCCGCGAGTTCATGCGCATTTACAAGACCGTCGGCGCGCGCCGCGACAGCGTCGAGAAGGCCTTCAAAATCTGATCCTGACAGCGGCCGCCATGGGGGAATATGTGTATCTGTTACAGTAATTTACGAAGATGAAGCTGATTATTAGCAACCGATAAGTGTTTCATCAGCAATTATATATGTTGTTGATGTACTGATTATATGTACATCGATGTAACTGTACCTGTAACACCCTCAAGAACCTTTAAAAATCTATAAATCTAAATAAAATGTTCAAAAAAAAAAGGA]
[+] EMBL CF311318 [TTGGTGCCGCCGGAGACGATGCGGGAGATGGCGGCGGTGTGCGAGGAGTTCTTCCGGCTGCCGGCGGAGGACAAGGCGGCGTTCTACTCCGACGCGGAGGAGAACCCCAACCGCCTCTTCTCCAGCACCATCTACGAGGTCGGCGACCAGCGCTACTGGCGCGACTGCCTCCGCCTCGCCTGCGGCTTCCCCGTCGCCGACGACACCAACACCCACTGGCCCGACAAGCCCCACCATCTCCGGTGAACCAAAAACAAAAAAAAAAATCCTCAACCAGCAGCATCAAATCACTCCCAAATCAGTTGCTGATTGGATTTAATTTGATCCTAATTGCGTTGCAAGGGATGTCACGGAGAAGTTCTTCGTGGCGACGAGGGGATTGGGGATCGAGCTGCTGCGGCTGCTGTGCGAGGGGATGGGGCTCAAGCCGGACTACTTCGAGCGCGACCTCACCGCCGGCGATGTCATCATCAACGTCAACCACTACCCTCCATGCCCGGATCCGAGCCTGACGCTGGGCTTGCCGCCGCACTGCGACCGCAACCTCATCACCCTGCTCCTTCAGGGCGACGTCTTCGGCCTCCAGGTCTCCTACAATGGCGACTGGATCAACGTCGACCCCGTCCCCGACGCCTTCG ]
[+] EMBL CF312897 [ TGGCGGCGGTGTGCGAGGAGTTCTTCCGGCTGCCGGCGGAGGACAAGGCGGCGTTCTACTCCGACGCGGAGGAGAACCCCAACCGCCTCTTCTCCAGCACCATCTACGAGGTCGGCGACCAGCGCTACTGGCGCGACTGCCTCCGCCTCGCCTGCGGCTTCCCCGTCGCCGACGACACCAACACCCACTGGCCCGACAAGCCCCACCATCTCCGGTGAACCAAAAACAAAAAAAAAAATCCTCAACCAGCAGCATCAAATCACTCCCAAATCAGTTGCTGATTGGATTTAATTTGATCCTAATTGCGTTGCAAGGGATGTCACGGAGAAGTTCTTCGTGGCGACGAGGGGATTGGGGATCGAGCTGCTGCGGCTGCTGTGCGAGGGGATGGGGCTCANGCCGGACTACTTCGAGCGCGACCTCACCGCCGGCGATGTCATCATCAACGTCAACCACTACCCTCCATGCCCGGATCCGAGCCTGACGCTGGGCTTGCCGCCGCACTGCGACCGCAACCTCATCACCCTGCTCCTCCAGGGCGACGTCTTCGGCCTCCAGGTCTCCTACAATGG ]
[-] EMBL CB671508 [ GGGATTGGGGATCGAGCTGCTGCGGCTGCTGTGCGAGGGGATGGGGCTCAGGCCGGACTACTTCGAGCGCGACCTCACCGCCGGCGATGTCATCATCAACGTCAACCACTACCCTCCATGCCCGGATCCGAGCCTGACGCTGGGCTTGCCGCCGCACTGCGACCGCAACCTCATCACCCTGCTCCTCCAGGGCGACGTCTTCGGCCTCCAGGTCTCCTACAATGGCGACTGGATCAACGTCGACCCCGTCCCCGACGCCTTCGTCGTCAACTTTGGCCACCTCCTCGAGATTGCGACGAACGGAGTGCTGAAGAGCATCGAGCACAGGGCGATGACGAACTCGGCGGTGGCGAGGACGTCGGTGGCGACGTTCATGATGCCGCCGATGGACTGCCTCGTCGGACCGGCGAAGGAGCTCGTCGGAGACGGCGGCCAGCCGCAGTATCGCACCGTCACGTTCCGCGAGTTCATGCGCATTTACAAGACCGTCGGCGCGCGCCGCGACAGCGTCGAGAAGGCCTTCAAAATCTGATCCTGACAGCGGCCGCCATGGGGGAATATGTGTATCTGTTACAGTAATTTACGAAGATGAAGCTGATTATTAGCAACCGATAAGTGTTTCATCAGCAATTATATATGTTGTTGATGTACTGATTATATGTACATCGATGTAACTGTACCTGTAACACCCTCAAGAACCTTTAAAAATCTATAAATCTAAATAAAATGTTCAAAAAAAAAAGGA]
[-] EMBL CB661730 [ ATCGAGCTGCTGCGGCTGCTGTGCGAGGGGATGGGGCTCAGGCCGGACTACTTCGAGCGCGACCTCACCGCCGGCGATGTCATCATCAACGTCAACCACTACCCTCCATGCCCGGATCCGAGCCTGACGCTGGGCTTGCCGCCGCACTGCGACCGCAACCTCATCACCCTGCTCCTCCAGGGCGACGTCTTCGGCCTCCAGGTCTCCTACAATGGCGACTGGATCAACGTCGACCCCGTCCCCGACGCCTTCGTCGTCAACTTTGGCCACCTCCTCGAGATTGCGACGAACGGAGTGCTGAAGAGCATCGAGCACAGGGCGATGACGAACTCGGCGGTGGCGAGGACGTCGGTGGCGACGTTCATGATGCCGCCGATGGACTGCCTCGTCGGACCGGCGAAGGAGCTCGTCGGAGACGGCGGCCAGCCGCAGTATCGCACCGTCACGTTCCGCGAGTTCATGCGCATCTACAAGACCGTCGGCGCGCGCCGCGACAGCGTCGAGAAGGCCTTCAAAATCTGATCCTGACAGCGGCCGCCATGGGGGAATATGTGTATCTGTTACAGTAATTTACGAAGATGAAGCTGATTATTAGCAACCGATAAGTGTTTCATCAGCAATGATATATGTTGTTGATGTACTGATTATATGTACATCGATGTAACTGTACCTGTAACACCCTCAAG ACCCATGAAAATCTATAAATCTAAATAAAATGTTCAAAAAAAAAAGG ]
consensusID : consensus_15153#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 571 fasta sequence
[GCCCTTTTAAANGGAGGGTTGGTTTTTANGGGGAAAACNGNCCCCCGGAAAAAAGGGAAAGGGCGNTTNGGNGATTTTTTCGGNCCCGGGGGGGAAAGGGGGGTTTAATTCGNAGGGGNGGNGAACCCCAACCGCTTTTTTTCCAGCACCATTNAAGGGGTTGGGGACCAGGGGNAAANGGGGGANGCCTTCCGCTTTGCCNGGGGGTTTCCCGNTNGCNGANGANACCAAAAACCAATGGCCCGGACAAGCCCNACNATTTCCGGGATGTCACGGAGAAGTTTTTCGTGGCGACGAGGGGATTGGGGATCGAGCTGCTGCGGCTGCTGTGCGAGGGGATGGGGCTCAGGCCGGANTACTTCGAGCGCGACCTCACCGCCGGCGATGTCATCATCAACGTCAACCACTACCCTCCATGCCCGGATCCGAGCCTGACGCTGGGCTTGCCGCCGCACTGCGACCGCAACCTCATCACCCTGCTCCTCCAGGGCGACGTCTTCGGCCTCCAGGTCTCCTACAATGGCGACTGGATCAACGTCGACCCCGTCCCCGACGCCTTCGTCGTCAACTT]
[+] EMBL AA753970 [GCCCTTTTAAANGGAGGGTTGGTTTTTANGGGGAAAACNGNCCCCCGGAAAAAAGGGAAAGGGCGNTTNGGNGATTTTTTCGGNCCCGGGGGGGAAAGGGGGGTTTAATTCGNAGGGGNGGNGAACCCCAACCGCTTTTTTTCCAGCACCATTNAAGGGGTTGGGGACCAGGGGNAAANGGGGGANGCCTTCCGCTTTGCCNGGGGGTTTCCCGNTNGCNGANGANACCAAAAACCAATGGCCCGGACAAGCCCNACNATTTCCGGGATGTCACGGAGAAGTTTTTCGTGGCGACGAGGGGATTGGGGATCGAGCTGCTGCGGCTGCTGTGCGAGGGGATGGGGCTCAGGCCGGANTACTTCGAGCGCGACCTCACCGCCGGCGATGTCATCATCAACGTCAACCACTACCCTCCATGCCCGGATCCGAGCCTGACGCTGGGCTTGCCGCCGCACTGCGACCGCAACCTCATCACCCTGCTCCTCCAGGGCGACGTCTTCGGCCTCCAGGTCTCCTACAATGGCGACTGGATCAACGTCGACCCCGTCCCCGACGCCTTCGTCGTCAACTT]
consensusID : consensus_15153#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence
[AGAGGACGAGACAAGGGGGAATATGTGTATCTGTTACAGTAATTTACGAAGATGAAGCTGATTATTAGCAACCGATAAATGTTTCATCAGCAATTATATATGTTGTTGATGTACTGATTATATGTACATCGATGTAACTGTACCTGTAACCCCCTCAAAAACCTTTAAAAATCTATAAATTTAAATAAAATGTTCAAATGGATTTGATGCAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA761190 [AGAGGACGAGACAAGGGGGAATATGTGTATCTGTTACAGTAATTTACGAAGATGAAGCTGATTATTAGCAACCGATAAATGTTTCATCAGCAATTATATATGTTGTTGATGTACTGATTATATGTACATCGATGTAACTGTACCTGTAACCCCCTCAAAAACCTTTAAAAATCTATAAATTTAAATAAAATGTTCAAATGGATTTGATGCAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15153#0 CTTGCTTAGCTCGATTGCTTTGCTCTGATCTGGTTGATCGATCTCGTCGTCGGCGATGGA 60
consensus_15153#3 ------------------------------------------------------------
consensus_15153#1 ------------------------------------------------------------
consensus_15153#2 ------------------------------------------------------------
consensus_15153#0 GAAGTTGCTTTCCTCCTCCGGCGCCGCCGCCGCCGTGGCGTCGCAGGGCCAGCTCCCGGA 120
consensus_15153#3 ------------------------------------------------------------
consensus_15153#1 ------------------------------------------------------------
consensus_15153#2 ------------------------------------------------------------
consensus_15153#0 CTGCTTCGTGTTCCCGGCCGACCGGCGCCCACCGGCCTCCACCGCGGCCGTGTCGCTCCC 180
consensus_15153#3 ------------------------------------------------------------
consensus_15153#1 ---------------------------------------------------TTGGTGCCG 9
consensus_15153#2 ------------------------------------------------------------
consensus_15153#0 CGTCATCGACCTCTCCGGCCCCCGCGACGCCGTCCGCCGCGCCGTCCTCGACGCCGGCAA 240
consensus_15153#3 ------------------------------------------------------------
consensus_15153#1 CCGGAGACGATGCGGGAGATGGCGGCGGTGTGCGAGGAGTTCTTCCGGCTGCCGGCGGAG 69
consensus_15153#2 ------------------------------------------------------------
consensus_15153#0 GGAGCTCGGCTTCTTCCAGGTGGTGAACCACGGCGTGCCGCCGGAGACGATGCGGGAGAT 300
consensus_15153#3 ------------------------------------------------------------
consensus_15153#1 GACAAGGCGGCGTTCTACTCCGACGCGGAGGAGAACCCCAACCGCCTCTTCTCCAGCACC 129
consensus_15153#2 ------------------------------------------------------------
consensus_15153#0 GGCGGCGGTGTGCGAGGAGTTCTTCCGGCTGCCGGCGGAGGACAAGGCGGCGTTCTACTC 360
consensus_15153#3 ------------------------------------------------------------
consensus_15153#1 ATCTACGAGGTCGGCGACCAGCGCTACTGGCGCGACTGCCTCCGCCTCGCCTGCGGCTTC 189
consensus_15153#2 ------------------------------------------------------------
consensus_15153#0 CGACGCGGAGGAGAACCCCAACCGCCTCTTCTCCAGCACCATCTACGAGGTCGGCGACCA 420
consensus_15153#3 ------------------------------------------------------------
consensus_15153#1 CCCGTCGCCGACGACACCAACACCCACTGGCCCGACAAGCCCCACCATCTCCGGTGAACC 249
consensus_15153#2 ------------------------------------------------------------
consensus_15153#0 GCGCTACTGGCGCGACTGCCTCCGCCTCGCCTGCGGCTTCCCCGTCGCCGACGACACCAA 480
consensus_15153#3 ------------------------------------------------------------
consensus_15153#1 AAAAACAAAAAAAAAAATCCTCAACCAGCAGCATCAAATCACTCCCAAATCAGTTGCTGA 309
consensus_15153#2 ------------------------------------------------------------
consensus_15153#0 CACCCACTGGCCCGACAAGCCCCACCATCTCCGGGATGTCACGGAGAAGTTCTTCGTGGC 540
consensus_15153#3 ------------------------------------------------------------
consensus_15153#1 TTGGATTTAATTTGATCCTAATTGCGTTGCAAGGGATGTCACGGAGAAGTTCTTCGTGGC 369
consensus_15153#2 ------------------------------------------------------------
consensus_15153#0 GACGAGGGGATTGGGGATCGAGCTGCTGCGGCTGCTGTGCGAGGGGATGGGGCTCAGGCC 600
consensus_15153#3 ------------------------------------------------------------
consensus_15153#1 GACGAGGGGATTGGGGATCGAGCTGCTGCGGCTGCTGTGCGAGGGGATGGGGCTCAGGCC 429
consensus_15153#2 ------------------------------------------------------------
consensus_15153#0 GGACTACTTCGAGCGCGACCTCACCGCCGGCGATGTCATCATCAACGTCAACCACTACCC 660
consensus_15153#3 ------------------------------------------------------------
consensus_15153#1 GGACTACTTCGAGCGCGACCTCACCGCCGGCGATGTCATCATCAACGTCAACCACTACCC 489
consensus_15153#2 ------------------------------------------------------------
consensus_15153#0 TCCATGCCCGGATCCGAGCCTGACGCTGGGCTTGCCGCCGCACTGCGACCGCAACCTCAT 720
consensus_15153#3 ------------------------------------------------------------
consensus_15153#1 TCCATGCCCGGATCCGAGCCTGACGCTGGGCTTGCCGCCGCACTGCGACCGCAACCTCAT 549
consensus_15153#2 ------------------------------------------------------------
consensus_15153#0 CACCCTGCTCCTCCAGGGCGACGTCTTCGGCCTCCAGGTCTCCTACAATGGCGACTGGAT 780
consensus_15153#3 ------------------------------------------------------------
consensus_15153#1 CACCCTGCTCCTCCAGGGCGACGTCTTCGGCCTCCAGGTCTCCTACAATGGCGACTGGAT 609
consensus_15153#2 ------------------------------------------------------------
consensus_15153#0 CAACGTCGACCCCGTCCCCGACGCCTTCGTCGTCAACTTTGGCCACCTCCTCGAGATTGC 840
consensus_15153#3 ------------------------------------------------------------
consensus_15153#1 CAACGTCGACCCCGTCCCCGACGCCTTCGTCGTCAACTTTGGCCACCTCCTCGAGATTGC 669
consensus_15153#2 ------------------------------------------------------------
consensus_15153#0 GACGAACGGAGTGCTGAAGAGCATCGAGCACAGGGCGATGACGAACTCGGCGGTGGCGAG 900
consensus_15153#3 ------------------------------------------------------------
consensus_15153#1 GACGAACGGAGTGCTGAAGAGCATCGAGCACAGGGCGATGACGAACTCGGCGGTGGCGAG 729
consensus_15153#2 ------------------------------------------------------------
consensus_15153#0 GACGTCGGTGGCGACGTTCATGATGCCGCCGATGGACTGCCTCGTCGGACCGGCGAAGGA 960
consensus_15153#3 ------------------------------------------------------------
consensus_15153#1 GACGTCGGTGGCGACGTTCATGATGCCGCCGATGGACTGCCTCGTCGGACCGGCGAAGGA 789
consensus_15153#2 ------------------------------------------------------------
consensus_15153#0 GCTCGTCGGAGACGGCGGCCAGCCGCAGTATCGCACCGTCACGTTCCGCGAGTTCATGCG 1020
consensus_15153#3 ------------------------------------------------------------
consensus_15153#1 GCTCGTCGGAGACGGCGGCCAGCCGCAGTATCGCACCGTCACGTTCCGCGAGTTCATGCG 849
consensus_15153#2 ------------------------------------------------------------
consensus_15153#0 CATCTACAAGACCGTCGGCGCGCGCCGCGACAGCGTCGAGAAGGCCTTCAAAATCTGATC 1080
consensus_15153#3 ------------------------------------------------------------
consensus_15153#1 CATTTACAAGACCGTCGGCGCGCGCCGCGACAGCGTCGAGAAGGCCTTCAAAATCTGATC 909
consensus_15153#2 -----------------GCCCTTTTAAANGGAGGGTTGGTTTTTANGGGGAAAACNGNCC 43
consensus_15153#0 CTGACAGCGGCCGCCATGGGGGAATATGTGTATCTGTTACAGTAATTTACGAAGATGAAG 1140
consensus_15153#3 ---AGAGGACGAGACAAGGGGGAATATGTGTATCTGTTACAGTAATTTACGAAGATGAAG 57
consensus_15153#1 CTGACAGCGGCCGCCATGGGGGAATATGTGTATCTGTTACAGTAATTTACGAAGATGAAG 969
consensus_15153#2 CCCGGAAAAAAGGGAAAGGGCGNTTNGGNGATTTTTTCGGNCCCGGGGGGGAAAGGGGGG 103
* * * *** * * * * * * * *** * *
consensus_15153#0 CTGATTATTAGCAACCGATAAG----------TGTTTCATCAGCA--ATTATATATGTTG 1188
consensus_15153#3 CTGATTATTAGCAACCGATAAA----------TGTTTCATCAGCA--ATTATATATGTTG 105
consensus_15153#1 CTGATTATTAGCAACCGATAAG----------TGTTTCATCAGCA--ATTATATATGTTG 1017
consensus_15153#2 TTTAATTCGNAGGGGNGGNGAACCCCAACCGCTTTTTTTCCAGCACCATTNAAGGGGTTG 163
* * * * * * *** ***** *** * ****
consensus_15153#0 TTGAT-----GTACTGATTATATGTACATCGATGTAACTGTACCTGTAACACCCTCAAGA 1243
consensus_15153#3 TTGAT-----GTACTGATTATATGTACATCGATGTAACTGTACCTGTAACCCCCTCAAAA 160
consensus_15153#1 TTGAT-----GTACTGATTATATGTACATCGATGTAACTGTACCTGTAACACCCTCAAGA 1072
consensus_15153#2 GGGACCAGGGGNAAANGGGGGANGCCTTCCGCTTTGCCNGGGGGTTTCCCGNTNGCNGAN 223
** * * * * ** * * * * * * * *
consensus_15153#0 ACCTTTAAAAATCTATAAATCTAAATAAAATGTTCAAAT----GGATTTGATGCAAAAAA 1299
consensus_15153#3 ACCTTTAAAAATCTATAAATTTAAATAAAATGTTCAAAT----GGATTTGATGCAAAAAA 216
consensus_15153#1 ACCTTTAAAAATCTATAAATCTAAATAAAATGTTCAAAA----AAAAAAGGA-------- 1120
consensus_15153#2 GANACCAAAAACCAATGG-CCCGGACAAGCCCNACNATTTCCGGGATGTCACGGAGAAGT 282
***** * ** * ** * * *
consensus_15153#0 GCTATAAGCAAAGTTCAAAA---------------------------------------- 1319
consensus_15153#3 AAAAAAAAAAAAAAAAAAAA---------------------------------------- 236
consensus_15153#1 ------------------------------------------------------------
consensus_15153#2 TTTTCGTGGCGACGAGGGGATTGGGGATCGAGCTGCTGCGGCTGCTGTGCGAGGGGATGG 342
consensus_15153#0 ------------------------------------------------------------
consensus_15153#3 ------------------------------------------------------------
consensus_15153#1 ------------------------------------------------------------
consensus_15153#2 GGCTCAGGCCGGANTACTTCGAGCGCGACCTCACCGCCGGCGATGTCATCATCAACGTCA 402
consensus_15153#0 ------------------------------------------------------------
consensus_15153#3 ------------------------------------------------------------
consensus_15153#1 ------------------------------------------------------------
consensus_15153#2 ACCACTACCCTCCATGCCCGGATCCGAGCCTGACGCTGGGCTTGCCGCCGCACTGCGACC 462
consensus_15153#0 ------------------------------------------------------------
consensus_15153#3 ------------------------------------------------------------
consensus_15153#1 ------------------------------------------------------------
consensus_15153#2 GCAACCTCATCACCCTGCTCCTCCAGGGCGACGTCTTCGGCCTCCAGGTCTCCTACAATG 522
consensus_15153#0 -------------------------------------------------
consensus_15153#3 -------------------------------------------------
consensus_15153#1 -------------------------------------------------
consensus_15153#2 GCGACTGGATCAACGTCGACCCCGTCCCCGACGCCTTCGTCGTCAACTT 571
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||