These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15180#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1664 fasta sequence [CGAACTTAAAATCGCAGTCGCACCCCGGCGCCGATCGCAAGGTCCACCTCCTCCCCTCTCCACTCCTTCTAGAACCTTCTCGACCCCGCCATGCGCCCCGCGGTCGCCGCCGCCCTCCTCCTCGTCGCCGCCGCCGTCGCGGCCT-CGCCGGTTTCCGCCCTCTACTCCGCCGGCTCTCCCGTCCTCCAGTTCAACCCCAACAACTTCAAATCCAAGGTGCTGAACTCGAATGGGGTGGTGCTGGTGGAGTTCTTCGCGCCGTGGTGCGGGCACTGCCAGCAGCTGACGCCGATTTGGGAGAAGGCCGCGGGCGTCCTCAAGGGCGTCGCCACGGTCGCCGCGCTCGACGCCGACGCGCACAAGGAGCTCGCGCAGGAATATGGAATAAGAGGATTTCCAACTATTAAGGTGTTTGTTCCTGGAAAGCCTCCAGTAGATTATCAAGGAGCAAGAGATGTAAAGCCAATTGTTGAATTTGCTCTTTCACAGGTCAAGGCTCTTCTTAGAGATCGGTTGAATGGAAAGACATCAGCAGGTTCAGGTGGCAAGAAATCAGGTGGTTCAAGTGAGAAAACTGAACCAAGTGCGTCAATAGAATTAAATTCTCAAAACTTCGATAAACTTGTCACCAAAAGCAAGGATCTTTGGATTGTTGAGTTCTTTGCACCATGGTGTGGGCACTGCAAGAAATTGGCACCTGAATGGAAAAAGGCTGCAAAGAACTTGAAGGGCCAAGTGAAGCTAGGTCATGTGGATTGTGATGCTGAAAAGTCTTTGATGAGCAAGTACAAGGTAGAAGGCTTTCCTACTATTTTGGTATTTGGTGCCGATAAGGAGAGCCCATTCCCTTACCAGGGGGCTAGAGTTGCCTCTGCTATCGAGTCCTTTGCATTGGAGCAGTTGGAAGCCAATGCTGCTCCACCTGAAGTTTCTGAGTTGACTGGCCCAGACGNCAT-GGAAGAGGAAATGTGCTTNT-CTGCCATTTGCTNTGTATCTNTCCTTCCAGATATCTTGGATTCAAAGG-CCGAAGGAAGAAAC-AAGTACCTTGA-GCTGCTA-TTATCTGTTGCTGAGAAATTTAAAAAGAGTCCATACAGTTTTGTCTGGACAGCTGCTGGGAAGCAAGCTGATCTTGAGAAGCAAGTTGGAGTTGGTGGTTATGGCTATCCAGCGATGGTTGCTCTCAACGTG-AAAAAAGGCGCATATGCTCCACTCCGTAGTGCTTTCCAGCTTG-ATGAAATAACTGAGTTTGTGAAGGAAGCA-GGGCGCGGTGGGAAGGGTAATCTTCCTTTGGACGGTACCCCAACGATAGTCCAATCTGAACCA-TGGGACGGCAAAGATGGTGAGGTTATTGAAGAGGACGAATTCTCCCTTGAGGAGCTGATGGCCGACAACTCT-CCAGTAAATGACGAGTTGTGATTCTGATAATTCCGG--AAATGATGTT-AGAGTTGATTA-GCCAGACTGTAAATCTGAGTAACACTAATGCTTCACTCGTGTCAACTGTACAATTTGGGCGGGACAATTTTCAGAATGCTCCTTTGGTGTTATTACAGTACATTTTAGTTGAAGAAAAACATCGTTTGTGGTCTTTTAGGAGGGATGCTTTTCTCTGGGAAAT-AAAACTACTTCGTAATCTAAAAAAAAAAAAAAAAAAAAACTCGAGACTA] [+] EMBL AK062254 [CGAACTTAAAATCGCAGTCGCACCCCGGCGCCGATCGCAAGGTCCACCTCCTCCCCTCTCCACTCCTTCTAGAACCTTCTCGACCCCGCCATGCGCCCCGCGGTCGCCGCCGCCCTCCTCCTCGTCGCCGCCGCCGTCGCGGCCT CGCCGGTTTCCGCCCTCTACTCCGCCGGCTCTCCCGTCCTCCAGTTCAACCCCAACAACTTCAAATCCAAGGTGCTGAACTCGAATGGGGTGGTGCTGGTGGAGTTCTTCGCGCCGTGGTGCGGGCACTGCCAGCAGCTGACGCCGATTTGGGAGAAGGCCGCGGGCGTCCTCAAGGGCGTCGCCACGGTCGCCGCGCTCGACGCCGACGCGCACAAGGAGCTCGCGCAGGAATATGGAATAAGAGGATTTCCAACTATTAAGGTGTTTGTTCCTGGAAAGCCTCCAGTAGATTATCAAGGAGCAAGAGATGTAAAGCCAATTGTTGAATTTGCTCTTTCACAGGTCAAGGCTCTTCTTAGAGATCGGTTGAATGGAAAGACATCAGCAGGTTCAGGTGGCAAGAAATCAGGTGGTTCAAGTGAGAAAACTGAACCAAGTGCGTCAATAGAATTAAATTCTCAAAACTTCGATAAACTTGTCACCAAAAGCAAGGATCTTTGGATTGTTGAGTTCTTTGCACCATGGTGTGGGCACTGCAAGAAATTGGCACCTGAATGGAAAAAGGCTGCAAAGAACTTGAAGGGCCAAGTGAAGCTAGGTCATGTGGATTGTGATGCTGAAAAGTCTTTGATGAGCAAGTACAAGGTAGAAGGCTTTCCTACTATTTTGGTATTTGGTGCCGATAAGGAGAGCCCATTCCCTTACCAGGGGGCTAGAGTTGCCTCTGCTATCGAGTCCTTTGCATTGGAGCAGTTGGAAGCCAATGCTGCTCCACCTGAAGTTTCTGAGTTGACTGGCCCAGACGCCAT GGAAGAG ] [+] EMBL OSC104752 [ CCACTCCTTCTAGAACCTTCTCGACCCCGCCATGCGCCCCGCGGTCGCCGCCGCCCTCCTCCTCGTCGCCGCCGCCGTCGCGGNCTACGCCGGTTTCCGCCCTCTACTCCGCCGGCTCTCCCGTNCTCCAGTTCAACCCCAACAACTTCAAATCCAAGGTGCTGAACTCGAATGGGGTGGTGCTGGTGGAGTTCTTCGAGCCGTGGTGCGGGCACTGCCAGCAGCTGACGNCGATTTGGGAGAAGGCAGNGGGCGTCCTCAAGGGAGT ] [+] EMBL OSS4357A [ ATGGTGTGGGCACTGCAAGAAATTGGCACCTGAATGGAAAAAGGCTGCAAAGAACTTGAAGGGCCAAGTGAAGCTAGGTCATGTGGATTGTGATGCTGAAAAGTCTTTGATGAGCAAGTACAAGGTAGAAGGCTTTCCTACTATTTTGGTATTTGGTGCCGATAAGGAGAGCCCATTCCCTTACCAGGGGGCTAGAGTTGCCTCTGCTATCGAGTCCTTTGCATTGGAGCAGTTNGAAGCCAATGCTGCTCCACCTGAAGTTTCTGAGTTGACTGGCCCAGACGNCATGGGAAGA GAAATGTGCTTNTGCTGCCATTTGCTNTGTATCTNTCCTTCCAGATATCTTGGATTCAAAGGCCCGAGGTAAGAAACAAAGTACCTTGAGGCTGCTANTTATCctg ] [+] EMBL OSS14110A [ ATGGTGTGGGCACTGCAAGAAATTGGCACCTGAATGGAAAAAGGCTGCAAAGAACTTGAAGGGCCAAGTGAAGCTAGGTCATGTGGATTGTGATGCTGAAAAGTCTTTGATGAGCAAGTACAAGGTAGAAGGCTTTCCTACTATTTTGGTATTTGGTGCCGATAAGGAGAGCCCATTCCCTTACCAGGGGGCTAGAGTTGCCTCTGCTATCGAGTCCTTTGCATTGGAGCAGTTGGAAGCCAATGCTGCTCCACCTGAAGTTTCTGAGTTGACTGGCCCAGACGNCAT GGAAGAG ] [+] EMBL AU092093 [ CTTCCAGATATCTTGGATTCAAAGG CCGAAGGAAGAACC AAGTACCTTGA GCTGCTA TTATCTGTTGCTGAGAAATTTAAAAAGAGTCCATACAGTTTTGTCTGGACAGCTGCTGGGAAGCAAGCTGATCTTGAGAAGCAAGTTGGAGTTGGTGGTTATGGCTATCCAGCGATGGTTGCTCTCAACGTG AAAAAAGGCGCATATGCTCCACTCCGTAGTGCTTTCCAGCTTG ATGAAATAACTGAGTTTGTGAAGGAAGCA GGGCNCGGTGGGAAGGGTAATCTTCCTTTGGACGGTACCCCAACGATAGTCCAATCTGAACCA TGGGACGGCAAAGATGGTGAGGTTATTGAAGAGGACGAATTCTCCCTTGAGGAGCTGATGGCCGACAACTCT CCAGTAAATGACGAGTTGTGATTCTGATAATTCCGG AAATGATGTT AGAGTTGATTA GCCAGACTGTAAATCTGAGTAACACTAATGCTTCACTCGTGTCAACTGTACAATTTGGGCGGGACAATTTTCAGAATGCTCCTTTGGTGTTATTACAGTACATTTTAGTTGAAGAAAAACATCGTTTGTGGTCTTTTAGGAGGGATGCTTTTCTCTGGGAAAT AAAACTACTTCGTAATCTAAAAAAAAAAAAAAAAA ] [-] EMBL CB656586 [ TCCAGATATCTTGGATTCAAAGG CCGAAGGAAGAAAC AAGTACCTTGA GCTGCTA TTATCTGTTGCTGAGAAATTTAAAAAGAGTCCATACAGTTTTGTCTGGACAGCTGCTGGGAAGCAAGCTGATCTTGAGAAGCAAGTTGGAGTTGGTGGTTATGGCTATCCAGCGATGGTTGCTCTCAACGTG AAAAAAGGCGCATATGCTCCACTCCGTAGTGCTTTCCAGCTTG ATGAAATAACTGAGTTTGTGAAGGAAGCA GGGCGCGGTGGGAAGGGTAATCTTCCTTTGGACGGTACCCCAACGATAGTCCAATCTGAACCA TGGGACGGCAAAGATGGTGAGGTTATTGAAGAGGACGAATTCTCCCTTGAGGAGCTGATGGCCGACAACTCT CCAGTAAATGACGAGTTGTGATTCTGATAATTCCGG AAATGATGTT AGAGTTGATTA GCCAGACTGTAAATCTGAGTAACACTAATGCTTCACTCGTGTCAACTGTACAATTTGGGCGGGACAATTTTCAGAATGCTCCTTTGGTGTTATTACAGTACATTTTAGTTGAAGAAAAACATCGTTTGTGGTCTTTTAGGAGGGAGGCTTTTCTCTGGGAAAT AAAACTACTTCGTAA ] [+] EMBL OSC26961 [ gtncacanTCCAGATATCTTGGATTCAAAGG CCGAAGGAAGAAAC AAGTACCTTGA GCTGCTA TTATCTGTTGCTGAGAAATTTAAAAAGAGTCCATACAGTTTTGTCTGGNCAGCTGNTGGGAAGCAAGCTGATCTTGAGAAGCAAGTTGGAGTTGGTGGTTATGGCTATCCAGCGATGGTTGCTNTNAACGTGn ] [+] EMBL C73336 [ TTTTNTNTGGACAGCTGCTGGGAAGCAAGCTGATCTTNAGAAGCAAGTTGGAGTTGGTGGTTATGGCTATCCAGCGATGGTTGCTCTCAACGTG AAAAAAGGCGCATATGCTCCACTCCGTAGTGCTTTCCAGCTTG ATGAAATAACTGANTTTGTGAAGGAAGCA GGGCGCGGTGGGAAGGGTAATCTTCCTTTGGACGGTACCCCAACGATAGTCCAATCTGAACCA TGGGACGGCAAAGATGGTGAGGTTATTGAAGAGGACGAATTCTCCCTTGAGGAGCTGATGGCCGACAACTCT CCAGTAAATGACGAGTTGTNATTCTNATAATTCCGGGAAAATGATGTTAAGAGTTGATTAGGCCAGACTGTAAATCTGAGTAACACTAATGCTTCACTCGTGTCAACTGTACAATTTNGGCGGGGCAATTTCCAGAATGCT ] [+] EMBL BM421594 [ TTATGGCTATCCAGCGAT GTTGCTCTCAACGTG AAAAAAGGCGCATATGCTCCACTCCGTAGTGCTTTCCAGCTTG ATGAAATAACTGAGTTTGTGAAGGAAGCACGGGCGCGGTGGGAAGGGTAATCTTCCTTTGGACGGTACCCC ACGATAGTCCCATCTGAACCACTGGGACGGCAAAGATGGTGAGGTTATTGAAGAGGACGAATTCTCCCTTGAGGAGCTGATGGCCGACAACTCT CCAGTAAATGACGAGTTGTGATTCTGATAATTCCGG AAATGATGTT AGAGTTGATTA GCCAGACTGTAAATCTGAGTAACACTAATGCTTCACTCGTGTC ACTGTAC ATTTGGGCGGGAC ATTTTCAGAATGCTCCTTTGGTGTTATTACAGTATATTTTAGTTGAAGAAAAACCTTGTTTGTGGTCTTTTAGGAGGGATGCTTTTATCTGGGAAAT AAAAaaaaaa ] [+] EMBL AU165134 [ ttCGTGTAAGTATGGATCCGATGCTCCACTCCATGCTGCTTTCCATCTTGCATCTATCCTCTGACTTTGTGAATGAAGCT GGGCGCGGTGGGAAGGGTAATCTTCCTTTGGACGGTACCCCAACGATAGTCCAATCTGAACCA TGGGACGGCAAAGATGGTGAGGTTATTGAAGAGGACGAATTCTCCCTTGAGGAGCTGATGGCCGACAACTCT CCAGTAAATGACGAGTTGTGATTCTGATAATTCCGG AAATGATGTT AGAGTTGATTA GCCAGACTGTGGATCTGAGTAACACTATTGCTTCACTCGTGTCAACTGTACAATTTGGGCGGGACGATTTTCACAATGCTCCTTTGGTGTTATTACACTACATTTTAGTTGAAGAAAAACATCGTTTGTGGTCTTTTAGGAGGGATGCTTTTCTCTGGGAAGT TAAACTACTTCGTAATCTAAAAA ] [-] EMBL CF325626 [ CAAAGATGGTGAGGTTATTGAAGAGGACGAATTCTCCCTTGAGGAGCTGATGGCCGACAACTCT CCAGTAAATGACGAGTTGTGATTCTGATAATTCCGG AAATGATGTT AGAGTTGATTA GCCAGACTGTAAATCTGAGTAACACTAATGCTTCACTCGTGTCAACTGTACAATTTGGGCGGGACAATTTTCAGAATGCTCCTTTGGTGTTATTACAGTACATTTTAGTTGAAGAAAAACATCGTTTGTGGTCTTTTAGGAGGGATGCTTTTCTCTGGGAAAT AAAACTACTTCGTAATCTAGAAAAAAAAAAAAAAAAAAACTCGAGACTA] [+] EMBL BI797629 [ GGACGAATTCTCCCTTGAGGAGCTGATGGCCGACAACTCTCCCAGTAAATGACGAGTTGTGATTCTGATAATTCCGG AAATGATGTT AGAGTTGATTA GCCTGACTGTAAATCTGAGTAACACTAATGCTTCACTCGTGTC ACTGTAC ATTTGGGCGGGAC ATTTTCAGAATGCTCCTTTGGTGTTATTACAGTATATTTTAGTTGAAGAAAAAC TTGTTTGTGGTCTTTTAGGAGGGATGCTTTTATCTGGGAAAT AAAACTACTTCGTAATCTAAAAA ] [+] EMBL BI795453 [ GGAGCTGATGGCCGACAACTCT CCAGTAAATGACGAGTTGTGATTCTGATAATTCCGG AAATGATGTT AGAGTTGATTA GCCAGACTGTAAATCTGAGTAACACTAATGCTTCACTCGTGTCAACTGTAC ATTTGGGCGGGACAATTTTCAGAATGCTCCTTTGGTGTTATTACAGTATATTTTAGTTGAAGAAAAAC TTGTTTGTGGTCTTTTAGGAGGGATGCTTTTATCTGGGAAATCAAAACTACTTCGTAATCTAAAAAA ] consensusID : consensus_15180#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1106 fasta sequence [CGACGTGGAGGCTCTCCATTGGTCCGCACACGCGTCCGTCCGTCTTCCTCGCGAGCGAACTTAAAATCGCAGTCGCACCCCGGCGCCGATCGCAAGGTCCACCTCCTCCCCTCTCCACTCCTTCTAGAACCTTCTCGACCCCGCCATGCGCCCCGCGGTCGCCGCCGCCCTCCTCCTCGTCGCCGCCGCCGTCGCGGCCTCGCCGGTTTCCGCCCTCTACTCCGCCGGCTCTCCCGTCCTCCAGTTCAACCCCAACAACTTCAAATCCAAGGTGCTGAACTCGAATGGGGTGGTGCTGGTGGAGTTCTTCGCGCCGTGGTGCGGGCACTGCCAGCAGCTGACGCCGATTTGGGAGAAGGCCGCGGGCGTCCTCAAGGGCGTCG-CACGGTCGCCGCGCTCGACGCCGACGCGCACAAGGAGCTCGCGCAGGAATAT-GGAATAAGAGGATTTCCAACTATTAAGGTGTTTGTT-CCTGGAAAGCCTCCAGTAGATTATCAAGG-AGCAAGAGATGTAAAGCCAA-TTGTT-GAATTTGCTCTTTCACAGGTCAAGGCTCTTCTTAGAGATCGGTTGAATGGAAAGACATCAGCAGGTTCAGGTGGCAAGAAATCAGGTGGTTCAAGTGAGAAAACTGAACCAAGTGCGTCAATAGAATTAAATTCTCAAAACTTCGATAAACTTGTCACCAAAAGCAAGGATCTTTGGATTGTTGAGTTCTTTGCACCATGGTGTGGGCACTGCAAGAAATTGGCACCTGAATGGAAAAAGGCTGCAAAGAACTTGAAGGGCCAAGTGAAGCTAGGTCATGTGGATTGTGATGCTGAAAAGTCTTTGATGAGCAAGTACAAGGTAGAAGGCTTTCCTACTATTTTGGTATTTGGTGCCGATAAGGAGAGCCCATTCCCTTACCAGGGGGCTAGAGTTGCCTCTGCTATCGAGTCCTTTGCATTGGAGCAGTTGGAAGCCAATGCTGCTCCACCTGAAGTTTCTGAGTTGACTGGCCCAGTAAGTTTTCGTGATATTAACAAAGTTATCCTTTTGTGGAGACAATGGTCTGGGATTGATGTTTTGACGAGGTGGTTTGGCTTCTGTAGGACGCCATGGAAGAG] [+] EMBL AK072941 [CGACGTGGAGGCTCTCCATTGGTCCGCACACGCGTCCGTCCGTCTTCCTCGCGAGCGAACTTAAAATCGCAGTCGCACCCCGGCGCCGATCGCAAGGTCCACCTCCTCCCCTCTCCACTCCTTCTAGAACCTTCTCGACCCCGCCATGCGCCCCGCGGTCGCCGCCGCCCTCCTCCTCGTCGCCGCCGCCGTCGCGGCCTCGCCGGTTTCCGCCCTCTACTCCGCCGGCTCTCCCGTCCTCCAGTTCAACCCCAACAACTTCAAATCCAAGGTGCTGAACTCGAATGGGGTGGTGCTGGTGGAGTTCTTCGCGCCGTGGTGCGGGCACTGCCAGCAGCTGACGCCGATTTGGGAGAAGGCCGCGGGCGTCCTCAAGGGCGTCGCCACGGTCGCCGCGCTCGACGCCGACGCGCACAAGGAGCTCGCGCAGGAATAT GGAATAAGAGGATTTCCAACTATTAAGGTGTTTGTT CCTGGAAAGCCTCCAGTAGATTATCAAGG AGCAAGAGATGTAAAGCCAA TTGTT GAATTTGCTCTTTCACAGGTCAAGGCTCTTCTTAGAGATCGGTTGAATGGAAAGACATCAGCAGGTTCAGGTGGCAAGAAATCAGGTGGTTCAAGTGAGAAAACTGAACCAAGTGCGTCAATAGAATTAAATTCTCAAAACTTCGATAAACTTGTCACCAAAAGCAAGGATCTTTGGATTGTTGAGTTCTTTGCACCATGGTGTGGGCACTGCAAGAAATTGGCACCTGAATGGAAAAAGGCTGCAAAGAACTTGAAGGGCCAAGTGAAGCTAGGTCATGTGGATTGTGATGCTGAAAAGTCTTTGATGAGCAAGTACAAGGTAGAAGGCTTTCCTACTATTTTGGTATTTGGTGCCGATAAGGAGAGCCCATTCCCTTACCAGGGGGCTAGAGTTGCCTCTGCTATCGAGTCCTTTGCATTGGAGCAGTTGGAAGCCAATGCTGCTCCACCTGAAGTTTCTGAGTTGACTGGCCCAGTAAGTTTTCGTGATATTAACAAAGTTATCCTTTTGTGGAGACAATGGTCTGGGATTGATGTTTTGACGAGGTGGTTTGGCTTCTGTAGGACGCCATGGAAGAG] [+] EMBL AU101462 [ ACTCCTTCTAGAACCTTCTCGACCCCGCCATGCGCCCCGCGGTCGCCGCCGCCCTCCTCCTCGTCGCCGCCGCCGTCGCGGCGTCGCCGGTTTCCGCCCTCTACTCCGCCGGCTCTCCCGTCCTCCAGTTCAACCCCAACAACTTCAAATCCAAGGTGCTGAACTCGAATGGGGTGGTGCTGGTGGAGTTCTTCGCGCCGTGGTGCGGGCACTGNCAGCAGCTGACGCCGATTTGGGAGAAGGCCGCGGGCGTCCTCAAGGGCGTCG CACGGTCGCCGCGCTCGACGNCGACGCGCACAAGGAGCTCGCGCAGGAATAT GGAATAAGAGGATTTNCAACTATTAAGGTGTTTGTT CCTGGGAAGCCTNCAGTAGATTATCAAGG AGCAAGAGATTTNAAGCCAATTTGTT GAATT ] [+] EMBL C93612 [ CTCCTTCTAGAACCTTCTCGACCCCGCCATGCGCCCCGCGGTCGCCGCCGCCCTCCTCCTCGTNGCCGCCGCCGTCGCGGACTCGCCGGTTTCCGCCCTCTACTCCGCCGGCTCTCCCGTCCTCCAGTTCAACCCCAACAACTTCAAATCCAAGGTGCTGAACTCGAATGGGGTGGTGCTGGTGGAGTTCTTCGCGCCGTGGTGCGGGCACTGCCAGCAGCTGACGCCGATTTGGGAGAAGGCCGCGGGCGTCCTCAAGGGCGTCG CACGGTCGCCGCGCTCGACGCNGACGCGCACAAGGAGCTCGCGCAGGAATAT GGAATAAGAGGATTTCCAACTATTAAGGTGTTTGTTNCTTGGAAAGGCTCCAGTAGATTATCAAGGTGGCAAGAGATGTAAAGCCAA TTTTTNGAA ] [+] EMBL C28486 [ TCNACCCCGCCAT NGCCCCG GGTCGCCGCCNCCCTCCTCCTCGTCGCCNCCNCCGT CGGATNCGCCGNTTTCCGCCCTCTACTCCGCCGGCTCTCCCNTCCTCCAGTTCAACCCCAACAACTTCAAATCCAAGGTGCTGAACTCGAATGGGGTGGTGCTGGTGGAGTTCTTCGCGCCGTGGTGNGNGCACTG CAGCAGCTGACGCCGATTTGGGAGAAGGCCGC GGNGTCCTCAAGGGCGTCG CACGGTCGCCGCGCTCGACGACGACGCGCACAAGGAGCTCGCGCAGGAATATGGGAATAAGAGGATTTCCAACTATTAAGGTGTTTGTT CCTGG ] consensusID : consensus_15180#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 435 fasta sequence [AAGCAGGGCGCGGTGGGAAGGGTAATCTTCCTTTGGACGGTACCCCAACGATAGTCCAATCTGAACCATGGGACGGCAAAGATGGTGAGGTTATTGAAGAGGACGAATTCTCCCTTGAGGAGCTGATGGCCGACAACTCTCCAGTAAATGACGAGTTGTGATTCTGATAATTCCGGAAATGATGTTAGAGTTGATTAGCCAGACTGTAAATCTGAGTAACACTAATGCTTCACTCGTGTCAACTGTACAATTTGGGCGGGACAATTTTCAGAATGCTCCTTTGGTGTTATTACAGTACATTTTAGTTGAAGAAAAACATCTGTTTGTGGTCTTTTAGGAGGGATGCTTTTCTCTGGGAAATAAAACTACTTCTGTAATCTAGATATTTTGCCTCAACNGTGTTTTCCTTCAAATAGAAATCTATGCTTTAAAAAA] [+] EMBL AU172920 [AAGCAGGGCGCGGTGGGAAGGGTAATCTTCCTTTGGACGGTACCCCAACGATAGTCCAATCTGAACCATGGGACGGCAAAGATGGTGAGGTTATTGAAGAGGACGAATTCTCCCTTGAGGAGCTGATGGCCGACAACTCTCCAGTAAATGACGAGTTGTGATTCTGATAATTCCGGAAATGATGTTAGAGTTGATTAGCCAGACTGTAAATCTGAGTAACACTAATGCTTCACTCGTGTCAACTGTACAATTTGGGCGGGACAATTTTCAGAATGCTCCTTTGGTGTTATTACAGTACATTTTAGTTGAAGAAAAACATCTGTTTGTGGTCTTTTAGGAGGGATGCTTTTCTCTGGGAAATAAAACTACTTCTGTAATCTAGATATTTTGCCTCAACNGTGTTTTCCTTCAAATAGAAATCTATGCTTTAAAAAA] [+] EMBL AU183129 [ GGACGGTACCCCAACGATAGTCCAATNTGAACCATGGGACGGCAAAGATGGTGAGGTTATTGAAGAGGACGAATTCTCCCTTGAGGAGCTGATGGCCGACAACTCTCCAGTAAATGACGAGTTGTGATTCTGATAATTCCGGAAATGATGTTAGAGTTGATTAGCCAGACTGTAAATCTGAGTAACACTAATGCTTCACTCGTGTCAACTGTACAATTTGGGCGGGACAATTTTCAGAATGCTCCTTTGGTGTTATTACAGTACATTTTAGTTGAAGAAAAACATC GTTTGTGGTCTTTTAGGAGGGATGCTTTTCTCTGGGAAATAAAACTACTTC GTAATCTAGATATTTTGCCTCAAC GTGTTTTCCTTCAAATAGAAATCTATGCTTTAAAAAA] consensusID : consensus_15180#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 175 fasta sequence [TTGGAGCAGTTGGAAGCCAATGCTGCTCCACCTGAAGTTTCTNANTTGACTGGCCCAGACGCCATGGAAGTAGTAAANNGCTTCTNNSCCATTTGCTTTGTATCTTTCCTTCCAGATATCTTGGATTCAAAGGCCGAAGAAGAAACAAGTNCCTTGAGCTGCTATTATCTGTTGC] [+] EMBL AA750217 [TTGGAGCAGTTGGAAGCCAATGCTGCTCCACCTGAAGTTTCTNANTTGACTGGCCCAGACGCCATGGAAGTAGTAAANNGCTTCTNNSCCATTTGCTTTGTATCTTTCCTTCCAGATATCTTGGATTCAAAGGCCGAAGAAGAAACAAGTNCCTTGAGCTGCTATTATCTGTTGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15180#1 CGACGTGGAGGCTCTCCATTGGTCCGCACACGCGTCCGTCCGTCTTCCTCGCGAGCGAAC 60 consensus_15180#3 ------------------------------------------------------------ consensus_15180#0 -------------------------------------------------------CGAAC 5 consensus_15180#2 ------------------------------------------------------------ consensus_15180#1 TTAAAATCGCAGTCGCACCCCGGCGCCGATCGCAAGGTCCACCTCCTCCCCTCTCCACTC 120 consensus_15180#3 ------------------------------------------------------------ consensus_15180#0 TTAAAATCGCAGTCGCACCCCGGCGCCGATCGCAAGGTCCACCTCCTCCCCTCTCCACTC 65 consensus_15180#2 ------------------------------------------------------------ consensus_15180#1 CTTCTAGAACCTTCTCGACCCCGCCATGCGCCCCGCGGTCGCCGCCGCCCTCCTCCTCGT 180 consensus_15180#3 ------------------------------------------------------------ consensus_15180#0 CTTCTAGAACCTTCTCGACCCCGCCATGCGCCCCGCGGTCGCCGCCGCCCTCCTCCTCGT 125 consensus_15180#2 ------------------------------------------------------------ consensus_15180#1 CGCCGCCGCCGTCGCGGCCTCGCCGGTTTCCGCCCTCTACTCCGCCGGCTCTCCCGTCCT 240 consensus_15180#3 ------------------------------------------------------------ consensus_15180#0 CGCCGCCGCCGTCGCGGCCTCGCCGGTTTCCGCCCTCTACTCCGCCGGCTCTCCCGTCCT 185 consensus_15180#2 ------------------------------------------------------------ consensus_15180#1 CCAGTTCAACCCCAACAACTTCAAATCCAAGGTGCTGAACTCGAATGGGGTGGTGCTGGT 300 consensus_15180#3 ------------------------------------------------------------ consensus_15180#0 CCAGTTCAACCCCAACAACTTCAAATCCAAGGTGCTGAACTCGAATGGGGTGGTGCTGGT 245 consensus_15180#2 ------------------------------------------------------------ consensus_15180#1 GGAGTTCTTCGCGCCGTGGTGCGGGCACTGCCAGCAGCTGACGCCGATTTGGGAGAAGGC 360 consensus_15180#3 ------------------------------------------------------------ consensus_15180#0 GGAGTTCTTCGCGCCGTGGTGCGGGCACTGCCAGCAGCTGACGCCGATTTGGGAGAAGGC 305 consensus_15180#2 ------------------------------------------------------------ consensus_15180#1 CGCGGGCGTCCTCAAGGGCGTCGC-ACGGTCGCCGCGCTCGACGCCGACGCGCACAAGGA 419 consensus_15180#3 ------------------------------------------------------------ consensus_15180#0 CGCGGGCGTCCTCAAGGGCGTCGCCACGGTCGCCGCGCTCGACGCCGACGCGCACAAGGA 365 consensus_15180#2 ------------------------------------------------------------ consensus_15180#1 GCTCGCGCAGGAATATGGAATAAGAGGATTTCCAACTATTAAGGTGTTTGTTCCTGGAAA 479 consensus_15180#3 ------------------------------------------------------------ consensus_15180#0 GCTCGCGCAGGAATATGGAATAAGAGGATTTCCAACTATTAAGGTGTTTGTTCCTGGAAA 425 consensus_15180#2 ------------------------------------------------------------ consensus_15180#1 GCCTCCAGTAGATTATCAAGGAGCAAGAGATGTAAAGCCAATTGTTGAATTTGCTCTTTC 539 consensus_15180#3 ------------------------------------------------------------ consensus_15180#0 GCCTCCAGTAGATTATCAAGGAGCAAGAGATGTAAAGCCAATTGTTGAATTTGCTCTTTC 485 consensus_15180#2 ------------------------------------------------------------ consensus_15180#1 ACAGGTCAAGGCTCTTCTTAGAGATCGGTTGAATGGAAAGACATCAGCAGGTTCAGGTGG 599 consensus_15180#3 ------------------------------------------------------------ consensus_15180#0 ACAGGTCAAGGCTCTTCTTAGAGATCGGTTGAATGGAAAGACATCAGCAGGTTCAGGTGG 545 consensus_15180#2 ------------------------------------------------------------ consensus_15180#1 CAAGAAATCAGGTGGTTCAAGTGAGAAAACTGAACCAAGTGCGTCAATAGAATTAAATTC 659 consensus_15180#3 ------------------------------------------------------------ consensus_15180#0 CAAGAAATCAGGTGGTTCAAGTGAGAAAACTGAACCAAGTGCGTCAATAGAATTAAATTC 605 consensus_15180#2 ------------------------------------------------------------ consensus_15180#1 TCAAAACTTCGATAAACTTGTCACCAAAAGCAAGGATCTTTGGATTGTTGAGTTCTTTGC 719 consensus_15180#3 ------------------------------------------------------------ consensus_15180#0 TCAAAACTTCGATAAACTTGTCACCAAAAGCAAGGATCTTTGGATTGTTGAGTTCTTTGC 665 consensus_15180#2 ---------------------------AAGCAGGGCGCGGTGGGAAGGGTAATCTTCCTT 33 consensus_15180#1 ACCATGGTGTGGGCACTGCAAG--AAATTGGCACCTGAATGGAAAAAGGCTGCAAAGAAC 777 consensus_15180#3 ------------------------------------------------------------ consensus_15180#0 ACCATGGTGTGGGCACTGCAAG--AAATTGGCACCTGAATGGAAAAAGGCTGCAAAGAAC 723 consensus_15180#2 TGGACGGTACCCCAACGATAGTCCAATCTGAACCATGGGACGGCAAAGATGGTGAGGTTA 93 consensus_15180#1 TTGAAGGGCCAAGTGAAGCTAGGTCATGTGGATTGTGATGCTGAAAAGTCTTTGATGAGC 837 consensus_15180#3 ------------------------------------------------------------ consensus_15180#0 TTGAAGGGCCAAGTGAAGCTAGGTCATGTGGATTGTGATGCTGAAAAGTCTTTGATGAGC 783 consensus_15180#2 TTGAAGAG----GACGAATTCTCCCTTGAGGAGCTGATGGCCGACAACTCTCCAGTAAAT 149 consensus_15180#1 AAGTACAAGGTAGAAGGCTTTCCTACTATTTTGGTATTTGGTGCCGATAAGGAGAGCCCA 897 consensus_15180#3 ------------------------------------------------------------ consensus_15180#0 AAGTACAAGGTAGAAGGCTTTCCTACTATTTTGGTATTTGGTGCCGATAAGGAGAGCCCA 843 consensus_15180#2 GA---CGAGTTGTGA----TTCTGATAATTCCGGAAATGATGTTAGAGTTGATTAGCCAG 202 consensus_15180#1 TTCCCTTACCAGGGGGCTAGAGTTGCCTCTGCTATCGAGTCCTTTGCATTGGAGCAGTTG 957 consensus_15180#3 ------------------------------------------------TTGGAGCAGTTG 12 consensus_15180#0 TTCCCTTACCAGGGGGCTAGAGTTGCCTCTGCTATCGAGTCCTTTGCATTGGAGCAGTTG 903 consensus_15180#2 ACTGTAAATCTGAGTAACACTAATGCTTCACTCGTGTCAACTGTACAATTTGGGCGGGAC 262 ** * ** * consensus_15180#1 GAAGCCAATGCTGCTCCACCTGAAGTTTCTGAGTTGACTGGCCCAGTAAGTTTTCGTGAT 1017 consensus_15180#3 GAAGCCAATGCTGCTCCACCTGAAGTTTCTNANTTGACTGGCCCAG-ACGCCATGGAAGT 71 consensus_15180#0 GAAGCCAATGCTGCTCCACCTGAAGTTTCTGAGTTGACTGGCCCAG-ACGNCATGGAAGA 962 consensus_15180#2 AATTTTCAGAATGCTCCTTTGGTGTTATTACAGTACATTTTAGTTG-AAGAAAAACATCT 321 * * ****** * * * * * * * * * * consensus_15180#1 ATTAACAAAGTTATCC--------TTTTGTGG------AGACAATGG--TCTGGGATT-- 1059 consensus_15180#3 AGTAAANNGCTTCTNNSCCATTTGCTTTGTATCTTTCCTTCCAGATA--TCTTGGATT-- 127 consensus_15180#0 GGAAATGTGCTTNTCTGCCATTTGCTNTGTATCTNTCCTTCCAGATA--TCTTGGATT-- 1018 consensus_15180#2 GTTTGTGGTCTTTTAGGAGGGATGCTTTTCTCTGGGAAATAAAACTACTTCTGTAATCTA 381 ** * * * * *** ** consensus_15180#1 GATGTTTTGACG-A--GGTGGTTTGGCTTCTGTAGGACGCCATGGAAGAG---------- 1106 consensus_15180#3 CAAAGGCCGAAG-A--AGAAACAAG--TNCCTTGAGCTGCTATTATCTGTTGC------- 175 consensus_15180#0 CAAAGGCCGAAGGA--AGAAACAAG--TACCTTGAGCTGCTATTATCTGTTGCTGAGAAA 1074 consensus_15180#2 GATATTTTGCCTCAACNGTGTTTTCCTTCAAATAGAAATCTATGCTTTAAAAAA------ 435 * * * * * * * ** consensus_15180#1 ------------------------------------------------------------ consensus_15180#3 ------------------------------------------------------------ consensus_15180#0 TTTAAAAAGAGTCCATACAGTTTTGTCTGGACAGCTGCTGGGAAGCAAGCTGATCTTGAG 1134 consensus_15180#2 ------------------------------------------------------------ consensus_15180#1 ------------------------------------------------------------ consensus_15180#3 ------------------------------------------------------------ consensus_15180#0 AAGCAAGTTGGAGTTGGTGGTTATGGCTATCCAGCGATGGTTGCTCTCAACGTGAAAAAA 1194 consensus_15180#2 ------------------------------------------------------------ consensus_15180#1 ------------------------------------------------------------ consensus_15180#3 ------------------------------------------------------------ consensus_15180#0 GGCGCATATGCTCCACTCCGTAGTGCTTTCCAGCTTGATGAAATAACTGAGTTTGTGAAG 1254 consensus_15180#2 ------------------------------------------------------------ consensus_15180#1 ------------------------------------------------------------ consensus_15180#3 ------------------------------------------------------------ consensus_15180#0 GAAGCAGGGCGCGGTGGGAAGGGTAATCTTCCTTTGGACGGTACCCCAACGATAGTCCAA 1314 consensus_15180#2 ------------------------------------------------------------ consensus_15180#1 ------------------------------------------------------------ consensus_15180#3 ------------------------------------------------------------ consensus_15180#0 TCTGAACCATGGGACGGCAAAGATGGTGAGGTTATTGAAGAGGACGAATTCTCCCTTGAG 1374 consensus_15180#2 ------------------------------------------------------------ consensus_15180#1 ------------------------------------------------------------ consensus_15180#3 ------------------------------------------------------------ consensus_15180#0 GAGCTGATGGCCGACAACTCTCCAGTAAATGACGAGTTGTGATTCTGATAATTCCGGAAA 1434 consensus_15180#2 ------------------------------------------------------------ consensus_15180#1 ------------------------------------------------------------ consensus_15180#3 ------------------------------------------------------------ consensus_15180#0 TGATGTTAGAGTTGATTAGCCAGACTGTAAATCTGAGTAACACTAATGCTTCACTCGTGT 1494 consensus_15180#2 ------------------------------------------------------------ consensus_15180#1 ------------------------------------------------------------ consensus_15180#3 ------------------------------------------------------------ consensus_15180#0 CAACTGTACAATTTGGGCGGGACAATTTTCAGAATGCTCCTTTGGTGTTATTACAGTACA 1554 consensus_15180#2 ------------------------------------------------------------ consensus_15180#1 ------------------------------------------------------------ consensus_15180#3 ------------------------------------------------------------ consensus_15180#0 TTTTAGTTGAAGAAAAACATCGTTTGTGGTCTTTTAGGAGGGATGCTTTTCTCTGGGAAA 1614 consensus_15180#2 ------------------------------------------------------------ consensus_15180#1 -------------------------------------------------- consensus_15180#3 -------------------------------------------------- consensus_15180#0 TAAAACTACTTCGTAATCTAAAAAAAAAAAAAAAAAAAAACTCGAGACTA 1664 consensus_15180#2 -------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||