These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15190#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1605 fasta sequence [CATCCCATCCCATCCCATCGCACCGCGCAAAACCCTAACCCAAAGGCAAGGGAGAAGAGGAGCGGACGCCATGGATGCTTCTCGCGTTGGCGAGCTCCGCACTTTCGTGGAGGCCTGCAAGAAGGACCCCTCCCTCCTCGCCGACCCCAACCTCGCCTTCTTCCGCGACTACCTCGAGAGCCTGGGCGCCCACCTCCCCGCCGCCGCCTTCACCAAGGCCACCCCCAAGCCCA---AGCCGTCCTCCATGGATGACATCGACGATGAATACGACGACGACGACGACGACGATCTCAACATGAGGGATGCCACTCCGGAGCCGGACGAGC-TTGACCA-GGACATCGTCGAGTCCGATC-TTGAACTTGAAGGAGACATTGTCGAATCTGACCATCAGGACCCTCCGCAAAAGATGGGAGATCCTTCTATTGATGTCACCGAGGAAAATCGTGATGCCTCACAGGAGGCCAAAAGCAAGGCCATGGAAGCAATGTCAGAAGGGAAACTGGAAGAAGCTATTGACCATCTTACAAAGGCAATACTGCTCAATCCACTCTCAGCTATCATGTATGGTACTAGAGCTTCTGTGTTTATCAAAATGAAGAAACCTGTTGCTGCCATCCGTGATGCAAATGCTGCTCTAGAGATTAACCCAGACTCTGCAAAAGGCTACAAAACTCGTGGAATGGCTTATGCTATGCTTGGAAAATGGGAGGAAGCTGCCCATGATCTTCACACAGCATCGAACATGGATTATGATGATGAGATCAATGCTGTGCTCAAGAAGGTGGAGCCTAATGCACACAAGATAATGGAACATCGCAGGAAATATGAACGGCTGCGAAAAGAGAGGGAAGAAAAGAGAGCTGAGCGTGACCGATTCCATCGACGTGCAGAAGCACAGGCTGCTTATGACAAGGCCAAGCGGAAGGAGCAAT-CATCAAGTCGCTCAT-CGGGAGGTGCATCT-CCCAGGGGGGGCTT-CCCAGGAGGGATGCCTGGTGGAGGTTTCC-CAGGAGGAATG-CCTGGTGG-AGGTTT-CCCAGGTGGTATGCCTGGTGGAGGTTTCCCAGGTGGGATGCCTGGTGGCTTCCCTGGGGGTGCTATG-CCTGGAGGTGTTCCTGGGAATGTCGATATGAGTAAAATTCTGAATGACCCTGATCTGATGGCAGCATTTGGTGACCCTGAGGTTATGGCAGCTCTTCAAGATGTGATGAACAATCCTGCCAGCTTTGCGAGGCACCAAGCCAACCCCAAGGTGGGCCCCATCATTGCAAAGATGATGGCGAAATTCAATGGGTCCCAGTAAACGTTTTGAGTGAGCTGATGGTATGAGTAAATTGTTATTTGGCAATATGGTGTCAAGTGTTTTGTGATGAGCAAAAGCACGTTGGACGGTCTCTTGTTAGGTGCTACTCTTTTTTGTGAATGTGGTATTAAACGGTGGATGTATATGCAGAAATACTTTTCATCGGGCTGCTAACTCTATATTACTTCTTTTAGAGGTGCGACAATGAGGATTTGGAGATATGATTTGTTGACAGTTGTCGCATTCATTCATCTATCTGTTTGTGCATTGTGTTGGGTGGATAGCTCTACTTGTGTTGTGTTTAGGGC] [+] EMBL OSS14829A [CATCCCATCCCATCCCATCGCACCGCGCAAAACCCTAACCCAAAGGCAAGGGAGAAGAGGAGCGGACGCCATGGATGCTTCTCGCGTTGGCGAGCTCCGCACTTTCGTGGAGGCCTGCAAGAAGGACCCCTCCCTCCTCGNCGACCCCAACCTCGNCTTCTTCCGCGACTACCTCGAGAGCCTGGGCGNCCACCTCCNCGNCGGCGGCTTNACCAAGGCCACCCCCAAG ] [+] EMBL CB655254 [ TCCCATCCCATCGCACCGCGCAAAACCCTAACCCAAAGGCAAGGGAGAAGAGGAGCGGACGCCATGGATGCTTCTCGCGTTGGCGAGCTCCGCACTTTCGTGGAGGCCTGCAAGAAGGACCCCTCCCTCCTCGCCGACCCCAACCTCGCCTTCTTCCGCGACTACCTCGAGAGCCTGGGCGCCCACCTCCCCGCCGCCGCCTTCACCAAGGCCACCCCCAAGCCCA AGCCGTCCTCCATGGATGACATCGACGATGAATACGACGACGACGACGACGACGATCTCAACATGGGGGATGCCACTCCGGAGCCGGACGAGC TTGACCA GGACATCGTCGAGTCCGATC TTGAACTTGAAGGAGACATTGTCGAATCTGACCATCAGGACCCTCCGCAAAAGATGGGAGATCCTTCTATTGATGTCACCGAGGAAAATCGTGATGCCTCACAGGAGGCCAAAAGCAAGGCCATGGAAGCAATGTCAGAAGGGAAACTGGAAGAAGCTATTGACCATCTTACAAAGGCAATACTGCTCAATCCACTCTCAGCTATCATGTATGGTACTAGAGCTTCTGTGTTTATCAAAATGAAGAAACCTGTTGCTGCCATCCGTGATGCAAATGCTGCTCTAGAGATTAACCCAGACTCTGCAAAAGGCTACAAAACTCGTGGAATGGCTTATGCTATGCTTGGAAAATGGGAGGAAGCTGCCCATGATCTTCACACAGCATCGAACATGGATTATGATGATGAGATCA ] [+] EMBL AU062386 [ GCACCGCGCAAAACCCTAACCCAAAGGCAAGGGAGAAGAGGAGCGGACGCCATGGATGCTTCTCGCGTTGGCGAGCTCCGCACTTTCGTGGAGGCCTGCAAGAAGGACCCCTCCCTCCTCGCCGACCCCAACCTCGCCTTCTTCCGCGACTACCTCGAGAGCCTGGGCGCCCACCTCCCCGNCGNCGNCTTCACCAAGGCCACCCCCAAGCCCA AGCCGTCCTCCATGGATGACATCGACGATGAATACGACGACGACGACGACGACGATCTCAACATGAGGGATGNCANTTCGGAGCCGGACGAGC TTGACCA GGACATCGTCGAGTCCGATC TTGAACTTGAAGGAGACATTGTCGAATTTGACCATNAGGACCTTNCGTAAAAGAT ] [+] EMBL AK102264 [ GCGCAAAACCCTAACCCAAAGGCAAGGGAGAAGAGGAGCGGACGCCATGGATGCTTCTC CGTTGGCGAGCTCCGCACTTTCGTGGAGGCCTGCAAGAAGGACCCCTCCCTCCTCGCCGACCCCAACCTCGCCTTCTTCCGCGACTACCTCGAGAGCCTGGGCGCCCACCTCCCCGCCGCCGCCTTCACCAAGGCCACCCCCAAGCCCA AGCCGTCCTCCATGGATGACATCGACGATGAATACGACGACGACGACGACGACGATCTCAACATGAGGGATGCCACTCCGGAGCCGGACGAGC TTGACCA GGACATCGTCGAGTCCGATC TTGAACTTGAAGGAGACATTGTCGAATCTGACCATCAGGACCCTCCGCAAAAGATGGGAGATCCTTCTATTGATGTCACCGAGGAAAATCGTGATGCCTCACAGGAGGCCAAAAGCAAGGCCATGGAAGCAATGTCAGAAGGGAAACTGGAAGAAGCTATTGACCATCTTACAAAGGCAATACTGCTCAATCCACTCTCAGCTATCATGTATGGTACTAGAGCTTCTGTGTTTATCAAAATGAAGAAACCTGTTGCTGCCATCCGTGATGCAAATGCTGCTCTAGAGATTAACCCAGACTCTGCAAAAGGCTACAAAACTCGTGGAATGGCTTATGCTATGCTTGGAAAATGGGAGGAAGCTGCCCATGATCTTCACACAGCATCGAACATGGATTATGATGATGAGATCAATGCTGTGCTCAAGAAGGTGGAGCCTAATGCACACAAGATAATGGAACATCGCAGGAAATATGAACGGCTGCGAAAAGAGAGGGAAGAAAAGAGAGCTGAGCGTGACCGATTCCATCGACGTGCAGAAGCACAGGCTGCTTATGACAAGGCCAAGCGGAAGGAGCAAT CATCAAGTCGCTCAT CGGGAGGTGCATCT CCCAGGGGGGGCTT CCCAGGAGGGATGCCTGGTGGAGGTTTCC CAGGAGGAATG CCTGGTGG AGGTTT CCCAGGTGGTATGCCTGGTGGAGGTTTCCCAGGTGGGATGCCTGGTGGCTTCCCTGGGGGTGCTATG CCTGGAGGTGTTCCTGGGAATGTCGATATGAGTAAAATTCTGAATGACCCTGATCTGATGGCAGCATTTGGTGACCCTGAGGTTATGGCAGCTCTTCAAGATGTGATGAACAATCCTGCCAGCTTTGCGAGGCACCAAGCCAACCCCAAGGTGGGCCCCATCATTGCAAAGATGATGGCGAAATTCAATGGGTCCCAGTAAACGTTTTGAGTGAGCTGATGGTATGAGTAAATTGTTATTTGGCAATATGGTGTCAAGTGTTTTGTGATGAGCAAAAGCACGTTGGACGGTCTCTTGTTAGGTGCTACTCTTTTTTGTGAATGTGGTATTAAACGGTGGATGTATATGCAGAAATACTTTTCATCGGGCTGCTAACTCTATATTACTTCTTTTAGAGGTGCGACAATGAGGATTTGGAGATATGATTTGTTGACAGTTGTCGCA ] [+] EMBL OSC1233A [ TAACCCAAAGGCAAGGGAGAAGAGGAGCGGACGCCATGGATGCTTCTCGCGTTGGCGAGCTCCGCACTTTCGTGGAGGCCTGCAAGAAGGACCCCTCCCTCCTCGCCGACCCCAACCTCGCCTTCTTCCGCGACTACCTCGAGAGCCTGGGCGCCCACCTCCCCGCCGCCGCCTTCACCAAGGNCACCCCCAAGCCCA AGCCGTCCTCCATGGATGACATCGACGATGAATACGACGACGACGACGACGACGATCTCAACATGAGGGATGCCACTCCGGAGCCGGACGAGCTTTTACCA GGACATCGTCGAGTCCGATC TTNAACTT ] [+] EMBL OSC594 [ AGGCAAGGGAGAAGAGGAGCGGACG CATGGATGCTTCTCGCGTTGGCNTCNTCCGCACTTTCGTGGAGGCCTGCAAGAAGGACCCCTCCCTCCTCGCCGACCCCAACCTCGCCTTCTTCCGCGACTACCTCGAGAGCCTGGGCGCCCACCTCCCCGCCGCCGCCTTCACCAAGGCCACCCCCAAGCCCA AGCCGTCCTCCATGGATGACATCGACGATGAATACGACGACGACGACGACGACGATCTCAACATGAGGGATGCCACTCCGGAGCCGGACGAGC TTGACCAGGGACATCGTCGAGTCCGATCTTTGAACTTGAAGGAGACATTGTCGAATCTGACCATCAGGACCCTCCGCAAAAGATGGGAGATCCTTCTATTGATGTAACCGAGGAAAATCGTGATGCCTCACAGGAGGCAAAAAGCAAGG CATGGAAG ] [+] EMBL C28402 [ AGGGAGAAGAGGAGCGGACGCCATGGATGCTTCTNGCGTTGGCGAGCTCCGCACTTTCGTGGAGGCCTGCAAGAAGGACCCCTCCCTCCTCGCCGACCCCAACCTCGCCTTCTTCCGCGACTACCTCGAGAGCCTGGGCGCCCACCTCCCCGCCGCCGCCTTCACCAAGGCCACCCCCAAGCCCA AGCNGTCCTCCATGGATGANATCGACGATGAATACGACGACGACGACGACGACGATCTCAACATGAGGGATGCCACTCCGGAGCCGGACGAGC TTNACCA GGACATCGTCGAGTCCGATC TTGAACTTGAAGGAGACATTGTCGAATCTGACCATCAGGACCCTCCG AAAANATGGGAGATCCTTCTATT ] [+] EMBL CF319522 [ TGGATGCTTCTCGCGTTGGCGAGCTCCGCACTTTCGTGGAGGCCTGCAAGAAGGACCCCTCCCTCCTCGCCGACCCCAACCTCGCCTTCTTCCGCGACTACCTCGAGAGCCTGGGCGCCCACCTTCCCGCCGCCGCCTTCACCAAAGCCACCCCCAAGCCCAAGCAGCCGTCCTCCATGGATGACATCGACGATGAATACGACGACGACGACGACGACGAT ] [+] EMBL C97941 [ GATC TTGAACTTGAAGGAGACATTGTCGAATCTGACCATCAGGACCCTCCGCAAAAGATGGGAGATCCTTCTATTGATGTCACCGAGGAAAATCGTGATGCCTCACAGGAGGCCAAAAGCAAGGCCATGGAAGCAATGTCAGAAGGGAAACTGGAAGAAGCTATTGACCATCTTACAAAGGCAATACTGCTCAATCCACTCTCAGCTATCATGTATGGTACTAGAGCTTCTGTGTTTATCAAAATGAAGAAACCTGTTGCTGCCATCCGTGATGCAAATGCTGCTCTAGAGATTAACCCAGACTCTGCAAAAGGCTACAAAACTCGTGGAATGGCTTATGCTATGCTTGGAAAATGGGAGGAAGCTGCCCATGATCTTCACACAGCATCGAACATGGATTATGATGATGAGATCAATGCTGTGCTCAAGAAGGTGGAGCCTAATGCACACAAGATAATGGAACATCGCAGGAAATATGAACGGCTGCGAAAAGAGAGGGAAG ] [+] EMBL AU096719 [ GAGGGNAGAAAAGAGANCTGAGCNTGACCGATTCCATCGACGTGCAGAAGCACAGGCTGCTTATGACAAGGCCAAGCGGAAGGAGCAATCCATCAAGTCGCTCATCCGGGAGGTGCATCT CCCAGGGGGGGCTTCCCCAGGAGGGATGCCTGGTGGAGGTTTCC CAGGAGGAATG CCTGGTGG AGGTTT CCCAGGTGGTATGCCTGGTGGAGGTTTCCCAGGTGGGATGCCTGGTGGCTTCCCTGGGGGTGCTATGCCCTGGAGGTGTTCCTGGGAATGTCGATATGAGTAAAATTCTGAATGACCCTGATCTGATGGCAGCATTTGGTGACCCTGAGGTTATGGCAGCTCTTCAAGATGTGATGAACAATCCTGCCAGCTTTGCGAGGCACCAAGCCAACCCCAAGGTGGGCCCCATCATTGCAAAGATGATGGCGAAATTCAATGGGTCCCAGTAAACGTTTTGAGTGAGCTGATGGTATGAGTAAATTGTTATTTGGCAATATGGTGTCAAGTGTTTTGTGATGAGCAAAAGCACGTTGGACGGTCTCTTGTTAGGTGCTACTCTTTTTTGTGAATGTGGTATTAAACGGTGGATGTATATGCAGAAATACTTTTCATCGGGCTGCTAACTCTATATTACTTCTTTTAGAGGTGCGACAAaaa ] [+] EMBL AU092928 [ atc CATCAAGTCGCTCAT CGGGAGGTNCATCTCCCCAGGGGGGGCTT CCCAGGAGGGATGCCTGGTGGAGGTTCCCACAGGAGGAATGCCCTGGTGGAAGGTTTCCCCAGGTGGTATNCCTGGTGGANGTTTCCCAGGTGGGATGCCTGGTGGCTTCCCTGGGGGTGCTATG CCTGGAGGTGTTCCTGGGAATGTCGANATGNGTAAAATTCTGAATGACCCTNATCTGATGGCAGCATTTGNTGACCCTGAGGTTATGGCAGCTCTTCAAGATNTGATGAACAATCCTGCCAGCTTTGCGANGCACCAAGCCAACCCCNAGGTGGGCCCCATCATTGCAAAGATGATGGCGAAATTCAATGGGTCCCAGTAAACGTTTTGAGTGAGCTGATGGTATGAGTAAATTGTTATTTGGCAATATGGTGTCAAGTGTTTTGTGATGAGCAAAAGCACGTTGGACGGTCTCTTGTTAGGTGCTACTCTTTTTTGTGAATGTGGTATTAAACGGTGGATGTATATGCAGAAATACTTTTCATCGGGCTGCTAACTCTATATTACTTCTTTTAGAGGTGCGACAATGAGGATTTGGAGAaaaa ] [-] EMBL CF319523 [ GCTCAT CGGGAGGTGCATCT CCCAGGGGGGGCTT CCCAGGAGGGATGCCTGGTGGAGGTTTCC CAGGAGGAATG CCTGGTGG AGGTTT CCCAGGTGGTATGCCTGGTGGAGGTTTCCCAGGTGGGATGCCTGGTGGCTTCCCTGGGGGTGCTATG CCTGGAGGTGTTCCTGGGAATGTCGATATGAGTAAAATTCTGAATGACCCTGATCTGATGGCAGCATTTGGTGACCCTGAGGTTATGGCAGCTCTTCAAGATGTGATGAACAATCCTGCCAGCTTTGCGAGGCACCAAGCCAACCCCAAGGTGGGCCCCATCATTGCAAAGATGATGGCGAAATTCAATGGGTCCCAGTAAACGTTTTGAGTGAGCTGATGGTATGAGTAAATTGTTATTTGGCAATATGGTGTCAAGTGTTTTGTGATGAGCAAAAGCACGTTGGACGGTCTCTTGTTAGGTGCTACTCTTTTTTGTGAATGTGGTATTAAACGGTGGATGTATATGCAGAAATACTTTTCATCGGGCTGCTAACTCTATATTACTTCTTTTAGAGGTGCGACAATGAGGATTTGGAGATATGATTTGTTGACAaaaaaa ] [+] EMBL CF326582 [ CCTGGTGG AGGTTT CCCAGGTGGTATGCCTGGTGGAGGTTTCCCAGGTGGGATGCCTGGTGGCTTCCCTGGGGGTGCTATG CCTGGAGGTGTTCCTGGGAATGTCGATATGAGTAAAATTCTGAATGACCCTGATCTGATGGCAGCATTTGGTGACCCTGAGGTTATGGCAGCTCTTCAAGATGTGATGAACAATCCTGCCAGCTTTGCGAGGCACCAAGCCAACCCCAAGGTGGGCCCCATCATTGCAAAGATGATGGCGAAATTCAATGGGTCCCAGTAAACGTTTTGAGTGAGCTGATGGTATGAGTAAATTGTTATTTGGCAATATGGTGTCAAGTGTTTTGTGATGAGCAAAAGCACGTTGGACGGTCTCTTGTTAGGTGCTACTCTTTTTTGTGAATGTGGTATTAAACGGTGGATGTATATGCAGAAATACTTTTCATCGGGCTGCTAACTCTATATTACTTCTTTTAGAGGTGCGACAATGAGGATTTGGAGATATGATTTGTTGACAGTTGTCGCATTCATTCATCTATCTGTTTGTGCATTGTGTTGGGTGGATAGCTCTACTTGTGTTGTGTTTAGGGC] consensusID : consensus_15190#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 766 fasta sequence [AACATCGCAGGAAATATGAACGGCTGCGAAAAGAGAGGGAAGAAAAGAGAGCTGAGCGTGACCGATTCCATCGACGTGCAGAAGCACAGGCTGCTTATGACAAGGCCAAGCGGAAGGAGCAATCATCAAGTCGCTCATCGGGAGGTGCATCTCCCAGGGGGGGCTTCCCAGGAGGGATGCCTGGTGGAGGTTTCCCAGGAGGAATGCCTGGTGGAGGTTTCCCAGGTGGTATGCCTGGTGGAGGTTTCCCAGGTGGGATGCCTGGTGGCTTCCCTGGGGGTGCTATGCCTGGAGGTGTTCCTGGGAATGTCGATATGAGTAAAATTCTGAATGACCCTGATCTGATGGCAGCATTTGGTGACCCTGAGGTTATGGCAGCTCTTCAAGATGTGATGAACAATCCTGCCAGCTTTGCGAGGCACCAAGCCAACCCCAAGGTGGGCCCCATCATTGCAAAGATGATGGCGAAATTCAATGGGTCCCAGTAAACGTTTTGAGTGAGCTGATGGTATGAGTAAATTGTTATTTGGCAATATGGTGTCAAGTGTTTTGTGATGAGCAAAAGCACGTTGGACGGTCTCTTGTTAGGTGCTACTCTTTTTTTGTGAATGTGGTATTAAACGGTGGATGTATATGCAGAAATACTTTTCATCGGGCTGCTAACTCTATATTACTTCTTTTAGAGGTGCGACAATGAGGATTTGGAGATATGATTTGTTGACAGGGGTCGCATTCATTCATCTATCTGTTTGGCAAAATAAAAAGA] [-] EMBL CB655255 [AACATCGCAGGAAATATGAACGGCTGCGAAAAGAGAGGGAAGAAAAGAGAGCTGAGCGTGACCGATTCCATCGACGTGCAGAAGCACAGGCTGCTTATGACAAGGCCAAGCGGAAGGAGCAATCATCAAGTCGCTCATCGGGAGGTGCATCTCCCAGGGGGGGCTTCCCAGGAGGGATGCCTGGTGGAGGTTTCCCAGGAGGAATGCCTGGTGGAGGTTTCCCAGGTGGTATGCCTGGTGGAGGTTTCCCAGGTGGGATGCCTGGTGGCTTCCCTGGGGGTGCTATGCCTGGAGGTGTTCCTGGGAATGTCGATATGAGTAAAATTCTGAATGACCCTGATCTGATGGCAGCATTTGGTGACCCTGAGGTTATGGCAGCTCTTCAAGATGTGATGAACAATCCTGCCAGCTTTGCGAGGCACCAAGCCAACCCCAAGGTGGGCCCCATCATTGCAAAGATGATGGCGAAATTCAATGGGTCCCAGTAAACGTTTTGAGTGAGCTGATGGTATGAGTAAATTGTTATTTGGCAATATGGTGTCAAGTGTTTTGTGATGAGCAAAAGCACGTTGGACGGTCTCTTGTTAGGTGCTACTCTTTTTTTGTGAATGTGGTATTAAACGGTGGATGTATATGCAGAAATACTTTTCATCGGGCTGCTAACTCTATATTACTTCTTTTAGAGGTGCGACAATGAGGATTTGGAGATATGATTTGTTGACAGGGGTCGCATTCATTCATCTATCTGTTTGGCAAAATAAAAAGA] consensusID : consensus_15190#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 534 fasta sequence [TGGAGGTTTCCCAGGTGGGATGCCTGGTGGCTTCCCTGGGGGTGCTATGCCTGGAGGTGTTCCTGGGAATGTCGATATGAGTAAAATTCTGAATGACCCTGATCTGATGGCAGCATTTGGTGACCCTGAGGTTATGGCAGCTCTTCAAGATGTGATGAACAATCCTGCCAGCTTTGCGAGGCACCAAGCCAACCCCAAGGTGGGCCCCATCATTGCAAAGATGATGGCGAAATTCAATGGGTCCCAGTAAACGTTTTGAGTGAGCTGATGGTATGAGTAAATTGTTATTTGGCAATATGGTGTCAAGTGTTTTGTGATGAGCAAAAGCACGTTGGACGGTCTCTTGTTAGGTGCTACTCTTTTTTGTGAATGTGGTATTAAACGGTGGATGTATATGCAGAAATACTTTTCATCGGGCTGCTAACTCTATATTACTTCTTTTAGAGGTGCGACAATGAGGATTTGGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL C99313 [TGGAGGTTTCCCAGGTGGGATGCCTGGTGGCTTCCCTGGGGGTGCTATGCCTGGAGGTGTTCCTGGGAATGTCGATATGAGTAAAATTCTGAATGACCCTGATCTGATGGCAGCATTTGGTGACCCTGAGGTTATGGCAGCTCTTCAAGATGTGATGAACAATCCTGCCAGCTTTGCGAGGCACCAAGCCAACCCCAAGGTGGGCCCCATCATTGCAAAGATGATGGCGAAATTCAATGGGTCCCAGTAAACGTTTTGAGTGAGCTGATGGTATGAGTAAATTGTTATTTGGCAATATGGTGTCAAGTGTTTTGTGATGAGCAAAAGCACGTTGGACGGTCTCTTGTTAGGTGCTACTCTTTTTTGTGAATGTGGTATTAAACGGTGGATGTATATGCAGAAATACTTTTCATCGGGCTGCTAACTCTATATTACTTCTTTTAGAGGTGCGACAATGAGGATTTGGAGATATGATTTGTTGACAAAAAAAAAAAAAA ] [+] EMBL AU056227 [ CCNGTAAACGTTTTGAGTGAGCTGATGGTATGAGTAAATTGTTATTTGGCAATATGGTGTCAAGTGTTTTGTGATGAGCAAAAGCACGTTGGACGGTCTCTTGTTAGGTGCTACTCTTTTTTGTGAATGTGGTATTAAACGGTGGATGTATATGCAGAAATACTTTTCATCGGGCTGCTAACTCTATATTACTTCTTTTAGAGGTGCGACAATGAGGATTTGGTGAAAAAAAAAAAAAAAAAAAAA ] [+] EMBL CF327911 [ TATGGTGTCAAGTGTTTTGTGATGAGCAAAAGCACGTTGGACGGTCTCTTGTTAGGTGCTACTCTTTTTTGTGAATGTGGTATTAAACGGTGGATGTATATGCAGAAATACTTTTCATCGGGCTGCTAACTCTATATTACTTCTTTTAGAGGTGCGACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_15190#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 480 fasta sequence [TTTCCCAGGTGGGATGCCTGGTGGCTTCCCTGGGGGTGCTATGCCTGGAGGTGTTCCTGGGAATGTCGATATGAGTAAAATTCTGAATGACCCTGATCTGATGGCAGCATTTGGTGACCCTGAGGTTATGGCAGCTCTTCAAGATGTGATGAACAATCCTGCCAGCTTTGCGAGGCACCAAGCCAACCCCAAGGTGGGCCCCATCATTGCAAAGATGATGGCGAAATTCAATGGGTCCCAGTAAACGTTTTGAGTGAGCTGATGGTATGAGTAAATTGTTATTTGGCAATATGGTGTCAAGTGTTTTGTGATGAGCAAAAGCACGTTGGACGGTCTCTTGTTAGGTGCTACTCTTTTTTGTGAATGTGGTATTAAACGGTGGATGTATATGCAGAAATACTTTTCATCGGGCTGCTAACTCTATATTACTTCTTTTAAAAAAAAAAAANTAAAACACGTCATGCCGTTACGTAGCGTATC] [+] EMBL C97942 [TTTCCCAGGTGGGATGCCTGGTGGCTTCCCTGGGGGTGCTATGCCTGGAGGTGTTCCTGGGAATGTCGATATGAGTAAAATTCTGAATGACCCTGATCTGATGGCAGCATTTGGTGACCCTGAGGTTATGGCAGCTCTTCAAGATGTGATGAACAATCCTGCCAGCTTTGCGAGGCACCAAGCCAACCCCAAGGTGGGCCCCATCATTGCAAAGATGATGGCGAAATTCAATGGGTCCCAGTAAACGTTTTGAGTGAGCTGATGGTATGAGTAAATTGTTATTTGGCAATATGGTGTCAAGTGTTTTGTGATGAGCAAAAGCACGTTGGACGGTCTCTTGTTAGGTGCTACTCTTTTTTGTGAATGTGGTATTAAACGGTGGATGTATATGCAGAAATACTTTTCATCGGGCTGCTAACTCTATATTACTTCTTTTAAAAAAAAAAAANTAA ] [-] EMBL CF277404 [ ggTGCCTGGTGGCTTCCCTGGGGGTGCTATGCCTGGAGGTGTTCCTGGGAATGTCGATATGAGTAAAATTCTGAATGACCCTGATCTGATGGCAGCATTTGGTGACCCTGAGGTTATGGCAGCTCTTCAAGATGTGATGAACAATCCTGCCAGCTTTGCGAGGCACCAAGCCAACCCCAAGGTGGGCCCCATCATTGCAAAGATGATGGCGAAATTCAATGGGTCCCAGTAAACGTTTTGAGTGAGATGATGGTATGAGTAAATTGTTATTTGGCAATATGGTGTCAAGTGTTTTGTGATGAGCAAAAGCACGTTGGACGGTCTCTTGTTAGGCGCTACTCTTTTTTGTGAATGTGGTATTAAACGGTGGATGTATATGCAGAAATACTTTTCATCGGGCTGCTAACTCTATATTACGTCTTTTAAAAAAAAAAAAAAAAAACACGTCATGCCGTTACGTAGCGTATC] consensusID : consensus_15190#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 360 fasta sequence [TTATGCCACGCTCTTTCCAAGATGTGATGACCCNTCCGCCCGCTTTGCGAGGCCCCCACCCACCCCAAGGTGGCCCCCATCATGCAAAGATGATGCGAAATTCAATGGGTCCCNGTAAACGTTTTGAGTGACTGATGGTATGATAAATTGTTAGTTGCCAATAATGGTGTCCAAGTGTTTTGTGATGACCCAAAGCACGTTGGACGGTCTCTTGTTAGGTGCTACTCTTTTTTGTGAATGTGGTATTAAACGGTGGATGTATATCCAGAAATACTTTTCATCGGCTGCTAACTCTATATTACTTCTTTTAGAGGTCCCCCATGAGGATTTGGAATATGATTTGTGACGTGTCCCTTCCTC] [+] EMBL BM418648 [TTATGCCACGCTCTTTCCAAGATGTGATGACCCNTCCGCCCGCTTTGCGAGGCCCCCACCCACCCCAAGGTGGCCCCCATCATGCAAAGATGATGCGAAATTCAATGGGTCCCNGTAAACGTTTTGAGTGACTGATGGTATGATAAATTGTTAGTTGCCAATAATGGTGTCCAAGTGTTTTGTGATGACCCAAAGCACGTTGGACGGTCTCTTGTTAGGTGCTACTCTTTTTTGTGAATGTGGTATTAAACGGTGGATGTATATCCAGAAATACTTTTCATCGGCTGCTAACTCTATATTACTTCTTTTAGAGGTCCCCCATGAGGATTTGGAATATGATTTGTGACGTGTCCCTTCCTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15190#0 CATCCCATCCCATCCCATCGCACCGCGCAAAACCCTAACCCAAAGGCAAGGGAGAAGAGG 60 consensus_15190#1 ------------------------------------------------------------ consensus_15190#2 ------------------------------------------------------------ consensus_15190#3 ------------------------------------------------------------ consensus_15190#4 ------------------------------------------------------------ consensus_15190#0 AGCGGACGCCATGGATGCTTCTCGCGTTGGCGAGCTCCGCACTTTCGTGGAGGCCTGCAA 120 consensus_15190#1 ------------------------------------------------------------ consensus_15190#2 ------------------------------------------------------------ consensus_15190#3 ------------------------------------------------------------ consensus_15190#4 ------------------------------------------------------------ consensus_15190#0 GAAGGACCCCTCCCTCCTCGCCGACCCCAACCTCGCCTTCTTCCGCGACTACCTCGAGAG 180 consensus_15190#1 ------------------------------------------------------------ consensus_15190#2 ------------------------------------------------------------ consensus_15190#3 ------------------------------------------------------------ consensus_15190#4 ------------------------------------------------------------ consensus_15190#0 CCTGGGCGCCCACCTCCCCGCCGCCGCCTTCACCAAGGCCACCCCCAAGCCCAAGCCGTC 240 consensus_15190#1 ------------------------------------------------------------ consensus_15190#2 ------------------------------------------------------------ consensus_15190#3 ------------------------------------------------------------ consensus_15190#4 ------------------------------------------------------------ consensus_15190#0 CTCCATGGATGACATCGACGATGAATACGACGACGACGACGACGACGATCTCAACATGAG 300 consensus_15190#1 ------------------------------------------------------------ consensus_15190#2 ------------------------------------------------------------ consensus_15190#3 ------------------------------------------------------------ consensus_15190#4 ------------------------------------------------------------ consensus_15190#0 GGATGCCACTCCGGAGCCGGACGAGCTTGACCAGGACATCGTCGAGTCCGATCTTGAACT 360 consensus_15190#1 ------------------------------------------------------------ consensus_15190#2 ------------------------------------------------------------ consensus_15190#3 ------------------------------------------------------------ consensus_15190#4 ------------------------------------------------------------ consensus_15190#0 TGAAGGAGACATTGTCGAATCTGACCATCAGGACCCTCCGCAAAAGATGGGAGATCCTTC 420 consensus_15190#1 ------------------------------------------------------------ consensus_15190#2 ------------------------------------------------------------ consensus_15190#3 ------------------------------------------------------------ consensus_15190#4 ------------------------------------------------------------ consensus_15190#0 TATTGATGTCACCGAGGAAAATCGTGATGCCTCACAGGAGGCCAAAAGCAAGGCCATGGA 480 consensus_15190#1 ------------------------------------------------------------ consensus_15190#2 ------------------------------------------------------------ consensus_15190#3 ------------------------------------------------------------ consensus_15190#4 ------------------------------------------------------------ consensus_15190#0 AGCAATGTCAGAAGGGAAACTGGAAGAAGCTATTGACCATCTTACAAAGGCAATACTGCT 540 consensus_15190#1 ------------------------------------------------------------ consensus_15190#2 ------------------------------------------------------------ consensus_15190#3 ------------------------------------------------------------ consensus_15190#4 ------------------------------------------------------------ consensus_15190#0 CAATCCACTCTCAGCTATCATGTATGGTACTAGAGCTTCTGTGTTTATCAAAATGAAGAA 600 consensus_15190#1 ------------------------------------------------------------ consensus_15190#2 ------------------------------------------------------------ consensus_15190#3 ------------------------------------------------------------ consensus_15190#4 ------------------------------------------------------------ consensus_15190#0 ACCTGTTGCTGCCATCCGTGATGCAAATGCTGCTCTAGAGATTAACCCAGACTCTGCAAA 660 consensus_15190#1 ------------------------------------------------------------ consensus_15190#2 ------------------------------------------------------------ consensus_15190#3 ------------------------------------------------------------ consensus_15190#4 ------------------------------------------------------------ consensus_15190#0 AGGCTACAAAACTCGTGGAATGGCTTATGCTATGCTTGGAAAATGGGAGGAAGCTGCCCA 720 consensus_15190#1 ------------------------------------------------------------ consensus_15190#2 ------------------------------------------------------------ consensus_15190#3 ------------------------------------------------------------ consensus_15190#4 ------------------------------------------------------------ consensus_15190#0 TGATCTTCACACAGCATCGAACATGGATTATGATGATGAGATCAATGCTGTGCTCAAGAA 780 consensus_15190#1 ------------------------------------------------------------ consensus_15190#2 ------------------------------------------------------------ consensus_15190#3 ------------------------------------------------------------ consensus_15190#4 ------------------------------------------------------------ consensus_15190#0 GGTGGAGCCTAATGCACACAAGATAATGGAACATCGCAGGAAATATGAACGGCTGCGAAA 840 consensus_15190#1 -----------------------------AACATCGCAGGAAATATGAACGGCTGCGAAA 31 consensus_15190#2 ------------------------------------------------------------ consensus_15190#3 ------------------------------------------------------------ consensus_15190#4 ------------------------------------------------------------ consensus_15190#0 AGAGAGGGAAGAAAAGAGAGCTGAGCGTGACCGATTCCATCGACGTGCAGAAGCACAGGC 900 consensus_15190#1 AGAGAGGGAAGAAAAGAGAGCTGAGCGTGACCGATTCCATCGACGTGCAGAAGCACAGGC 91 consensus_15190#2 ------------------------------------------------------------ consensus_15190#3 ------------------------------------------------------------ consensus_15190#4 ------------------------------------------------------------ consensus_15190#0 TGCTTATGACAAGGCCAAGCGGAAGGAGCAATCATCAAGTCGCTCATCGGGAGGTGCATC 960 consensus_15190#1 TGCTTATGACAAGGCCAAGCGGAAGGAGCAATCATCAAGTCGCTCATCGGGAGGTGCATC 151 consensus_15190#2 ------------------------------------------------------------ consensus_15190#3 ------------------------------------------------------------ consensus_15190#4 ------------------------------------------------------------ consensus_15190#0 TCCCAGGGGGGGCTTCCCAGGAGGGATGCCTGGTGGAGGTTTCCCAGGAGGAATGCCTGG 1020 consensus_15190#1 TCCCAGGGGGGGCTTCCCAGGAGGGATGCCTGGTGGAGGTTTCCCAGGAGGAATGCCTGG 211 consensus_15190#2 ------------------------------------------------------------ consensus_15190#3 ------------------------------------------------------------ consensus_15190#4 ------------------------------------------------------------ consensus_15190#0 TGGAGGTTTCCCAGGTGGTATGCCTGGTGGAGGTTTCCCAGGTGGGATGCCTGGTGGCTT 1080 consensus_15190#1 TGGAGGTTTCCCAGGTGGTATGCCTGGTGGAGGTTTCCCAGGTGGGATGCCTGGTGGCTT 271 consensus_15190#2 ---------------------------TGGAGGTTTCCCAGGTGGGATGCCTGGTGGCTT 33 consensus_15190#3 ---------------------------------TTTCCCAGGTGGGATGCCTGGTGGCTT 27 consensus_15190#4 ------------------------------------------------------------ consensus_15190#0 CCCTGGGGGTGCTATGCCTGGAGGTGTTCCTGGGAATGTCGATATGAGTAAAATTCTGAA 1140 consensus_15190#1 CCCTGGGGGTGCTATGCCTGGAGGTGTTCCTGGGAATGTCGATATGAGTAAAATTCTGAA 331 consensus_15190#2 CCCTGGGGGTGCTATGCCTGGAGGTGTTCCTGGGAATGTCGATATGAGTAAAATTCTGAA 93 consensus_15190#3 CCCTGGGGGTGCTATGCCTGGAGGTGTTCCTGGGAATGTCGATATGAGTAAAATTCTGAA 87 consensus_15190#4 ------------------------------------------------------------ consensus_15190#0 TGACCCTGATCTGATGGCAGCATTTGGTGACCCTGAGGTTATGGCA-GCTCTT--CAAGA 1197 consensus_15190#1 TGACCCTGATCTGATGGCAGCATTTGGTGACCCTGAGGTTATGGCA-GCTCTT--CAAGA 388 consensus_15190#2 TGACCCTGATCTGATGGCAGCATTTGGTGACCCTGAGGTTATGGCA-GCTCTT--CAAGA 150 consensus_15190#3 TGACCCTGATCTGATGGCAGCATTTGGTGACCCTGAGGTTATGGCA-GCTCTT--CAAGA 144 consensus_15190#4 --------------------------------------TTATGCCACGCTCTTTCCAAGA 22 ***** ** ****** ***** consensus_15190#0 TGTGATGAACAATCCTGCCAGCTTTGCGAGGCACCAAGCCAACCCCAAGGTGGGCCCCAT 1257 consensus_15190#1 TGTGATGAACAATCCTGCCAGCTTTGCGAGGCACCAAGCCAACCCCAAGGTGGGCCCCAT 448 consensus_15190#2 TGTGATGAACAATCCTGCCAGCTTTGCGAGGCACCAAGCCAACCCCAAGGTGGGCCCCAT 210 consensus_15190#3 TGTGATGAACAATCCTGCCAGCTTTGCGAGGCACCAAGCCAACCCCAAGGTGGGCCCCAT 204 consensus_15190#4 TGTGATGACCCNTCC-GCCCGCTTTGCGAGGCCCCCA-CCCACCCCAAGGTGGCCCCCAT 80 ******** * *** *** ************ ** * ** ************ ****** consensus_15190#0 CATTGCAAAGATGATGGCGAAATTCAATGGGTCCCAGTAAACGTTTTGAGTGAGCTGATG 1317 consensus_15190#1 CATTGCAAAGATGATGGCGAAATTCAATGGGTCCCAGTAAACGTTTTGAGTGAGCTGATG 508 consensus_15190#2 CATTGCAAAGATGATGGCGAAATTCAATGGGTCCCAGTAAACGTTTTGAGTGAGCTGATG 270 consensus_15190#3 CATTGCAAAGATGATGGCGAAATTCAATGGGTCCCAGTAAACGTTTTGAGTGAGCTGATG 264 consensus_15190#4 CAT-GCAAAGATGATG-CGAAATTCAATGGGTCCCNGTAAACGTTTTGAGTGA-CTGATG 137 *** ************ ****************** ***************** ****** consensus_15190#0 GTATGAGTAAATTGTTATTTGGCAATA-TGGTGTC-AAGTGTTTTGTGATGAGCAAAAGC 1375 consensus_15190#1 GTATGAGTAAATTGTTATTTGGCAATA-TGGTGTC-AAGTGTTTTGTGATGAGCAAAAGC 566 consensus_15190#2 GTATGAGTAAATTGTTATTTGGCAATA-TGGTGTC-AAGTGTTTTGTGATGAGCAAAAGC 328 consensus_15190#3 GTATGAGTAAATTGTTATTTGGCAATA-TGGTGTC-AAGTGTTTTGTGATGAGCAAAAGC 322 consensus_15190#4 GTATGA-TAAATTGTTAGTTGCCAATAATGGTGTCCAAGTGTTTTGTGATGACCCAAAGC 196 ****** ********** *** ***** ******* **************** * ***** consensus_15190#0 ACGTTGGACGGTCTCTTGTTAGGTGCTACTCTTTTTT-GTGAATGTGGTATTAAACGGTG 1434 consensus_15190#1 ACGTTGGACGGTCTCTTGTTAGGTGCTACTCTTTTTTTGTGAATGTGGTATTAAACGGTG 626 consensus_15190#2 ACGTTGGACGGTCTCTTGTTAGGTGCTACTCTTTTTT-GTGAATGTGGTATTAAACGGTG 387 consensus_15190#3 ACGTTGGACGGTCTCTTGTTAGGTGCTACTCTTTTTT-GTGAATGTGGTATTAAACGGTG 381 consensus_15190#4 ACGTTGGACGGTCTCTTGTTAGGTGCTACTCTTTTTT-GTGAATGTGGTATTAAACGGTG 255 ************************************* ********************** consensus_15190#0 GATGTATATGCAGAAATACTTTTCATCGGGCTGCTAACTCTATATTACTTCTTTTAGAGG 1494 consensus_15190#1 GATGTATATGCAGAAATACTTTTCATCGGGCTGCTAACTCTATATTACTTCTTTTAGAGG 686 consensus_15190#2 GATGTATATGCAGAAATACTTTTCATCGGGCTGCTAACTCTATATTACTTCTTTTAGAGG 447 consensus_15190#3 GATGTATATGCAGAAATACTTTTCATCGGGCTGCTAACTCTATATTACTTCTTTTAAAAA 441 consensus_15190#4 GATGTATATCCAGAAATACTTTTCATCGG-CTGCTAACTCTATATTACTTCTTTTAGAGG 314 ********* ******************* ************************** * consensus_15190#0 TGCGACAATGAGG-ATTTGGAGATATGATTTGTTGACAGTTGTCGCATTCATTCATCTAT 1553 consensus_15190#1 TGCGACAATGAGG-ATTTGGAGATATGATTTGTTGACAGGGGTCGCATTCATTCATCTAT 745 consensus_15190#2 TGCGACAATGAGG-ATTTGGAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 506 consensus_15190#3 AAAAAAANTAAAACACGTCATGCCGTTACGTAGCGTATC--------------------- 480 consensus_15190#4 TCCCCCA-TGAGGATTTGGAATATGATTTGTGACGTGTCCCTTCCTC------------- 360 * * * consensus_15190#0 CTGTTTGTGCATTGTGTTGGGTGGATAGCTCTACTTGTGTTGTGTTTAGGGC 1605 consensus_15190#1 CTGTTTG-GCAAAATAAAAAGA------------------------------ 766 consensus_15190#2 AAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------------ 534 consensus_15190#3 ---------------------------------------------------- consensus_15190#4 ---------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||