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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15206#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 763 fasta sequence
[TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACAACACGAGACAGAAAATGGCACCTTCCAAGGTCAGCCTCGCCGCCGTGCTCGCCGTGGCCATCTCGCTGGCCATGGCGGCCACCACCACCACCTCGGCGCAGAACACGCCGCAGGACTACGTCAACCTGCACAAC-AGCGCGCGGCGCGGGGA-C-GGCGTC-GG--CCCG-GTG-AGC-TGGGACCCCAAGG-TCG--CCA-GCTTCGCGC-AGAGCTACGC-GGCCAAG-CGCG-CCGGCGA-CTGCC-GGCTG-C-A-GCACTCCGGCGGGCCGTACGGCGA-GAACATCTTCTGGGGCTCGGCGGGGCGCGCCT-GGAGCGCCG-CCGAC-GCGGT-GGCGTCGTGGGTGGGCGAGAAGAAGAACTACCACTACGACACCAACACGTGCGACCC-GGGCAAGGTGTGCGGCCAC-TACACCCAGGTGGTGTGGCGCAAGTCGGTGCGC-A-TCGGCTGCGCCCGCGTCGTGTGCGCGGCGAACCGC-GGCGTGTTCATCACCTGCAACTACGACCCCCCGGGCAACTTCAACGGCGAGCGCCCGTTCCTCACCCTCGACGCCGCGGCCAAGTAGACGACCACTCACTCGTACACAGTCGTGTTGAACTGCATGCTATGTCGCTGCCGCAGTACATTTCATCGATGTTTGTGACTCTGGGATCGACG-TCCGTGAACAATAAAGCATGTAATGATCTTAATAATAAATAATTTCTTGGTNAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAA]
[+] EMBL CA755277 [TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACAACACGAGACAGAAAATGGCACCTTCCAAGGTCAGCCTCGCCGCCGTGCTCGCCGTGGCCATCTCGCTGGCCATGGCGGCCACCACCACCACCTCGGCGCAGAACACGCCGCAGGACTACGTCAACCTGCACAAC AGCGCGCGGCGCGCGGA C GGCGTC GG CCCG GTG AGC TGGGACCCCAAGG TCG CCA GCTTCGCGC AGAGCTACGC GGCCAAG CGCG CCGGCGA CTGCC GGCTG C A GCACTCCGGCGGGCCGTACGGCGA GAACATCTTCTGGGGCTCGGCGGGGCGCGCCT GGAGCGCCG CCGAC GCGGT GGCGTCGTGGGTGGGCGAGAAGAAGAACTACCACTACGACACCAACACGTGCGACCC GGGCAAGGTGTGCGGCCAC TACACCCAGGTGGTGTGGCGCAAGTCGGTGCGC A TCGGCTGCGCCCGCGTCGTGTGCGCGGCGAACCGC GGCGTGTTCATCACCTGCAACTACGACCCCCCGGGCAACTTCAACGGCGAGCGCCCGTTCCTCACCCTCGACGCCGCGGCCAAGTAGACGACCACTCACTCGTACACAGTCGTGTTGAACTGCATGCTATGTCGCTGCCGCAGTACATTTCATCGATGTTTGTGACTCTGGGATCGACG TCCGTGAACAATAAAGCATGTAATGATCTTAATAATAAATAATTTCTTGGTNAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAA]
[+] EMBL OSR23324A [ ACAGAAAATGGCACCTTCCAAGGTCAGCCTCGCCGCCGTGCTNGCCGTGGCCATCTCGCTGGCCATGGCGGCCACCACCACCACCTCGGCGCAGAACACGCCGCAGGACTACGTCAACCTGCACAAC AGCGCGCGGCG GGGNAGCTGGCGTC GG CCCG GTG AGC TGGGACCCCAAGG TCG CCA GCTTCGCGC AGAGCTACGN GGCCAAG CGCG CCGGCGA CTGCC GCTTG C ANGCACTCCGGCGGGCCGTACGGCGATGAACATC ]
[+] EMBL AU070895 [ GAAAATGGCACCTTCCAAGGTCAGCCTCGCCGCCGTGCTCGCCGTGGCCATCTCGCTGGCCATGGCGGCCACCACCACCACCTCGGCGCAGAACACGCCGCAGGACTACGTCAACCTGCACAAC AGCGCGCGGCG GGGNA C GGCGTC GG CCCG GTG AGC TGGGACCCCAAGG TCG CCA GCTTCGCGC AGAGCTACGC GGCCAAG CGCG CCGGCGA CTGCC GGCTGNC A GCACTCCGGCGGGCCGTACGGCGA GAACATCTTCTGGGGCTCGGCGGGGCGCGCCT GGAGCGCCG CCGAC GCGGT GGCGTCGTGGGTGGGCGAGAAGAAGAACTACCACTACGACACCAACACGTGCGACCCGGGGCAAGGTGTGCGGCCACTTACACCCAGGTGGTGTGGCGCAAGTCGGTGCGC A TCGGCTGCGCCCGCGTCGTGTGCGCGGCGAACCGC GGCGTGTTCATCACCTGCAACTACGACCCCCCGGGCAACTTCAACGGCGAGCGCCCGTTCCTCACCNTCGACGCCGCGGCCAAGTAGACGACCACTCACTCGTACACAGTCGTGTTGAACTGCATGCTATGTCGCTGCCGCAGTACATTTCATCGATGTTTGTGANTCTGGGATCGACGTTCCGTGAACAATAAAGNATGTAATGAT ]
[+] EMBL AU184870 [ GAAAATGGCACCTTCCAAGGTCAGCCTCGCCGCCGTGCTCGCCGTGGCCATCTCGCTGGCCATGGCGGCCACCACCACCACCTCGGCGCAGAACACGCCGCAGGACTACGTCAACCTGCACAAC AGCGCGCGGCGCGCGGA C GGCGTC GG CCCG GTG AGC TGGGACCCCAAGG TCG CCA GCTTCGCGC AGAGCTACGC GGCCAAG CGCG CCGGCGA CTGCC GGCTG C A GCACTCCGGCGGGCCGTACGGCGA GAACATCTTCTGGGGCTCGGCGGGGCGCGCCT GGAGCGCCG CCGAC GCGGT GGCGTCGTGGGTGGGCGAGAAGAAGAACTACCACTACGACACCAACACGTGCGACCC GGGCAAGGTGTGCGGCCAC TACACCCAGGTGGTGTGGCGCAAGTCGGTGCGC A TCGGCTGCGCCCGCGTCGTGTGCGCGGC ]
[+] EMBL AU070684 [ ACCTTCCAAGGTCAGCCTCGCCGCCGTGCTCGCCGTGGCCATCTCGCTGGCCATGGCGGCCACCACCACCACCTCGGCGCAGAACACGCCGCAGGACTACGTCAACCTGCACAAC AGCGCGCGGCGGGGTAA C GGCGTCGGG CCCG GTG AGC TGGGACCCCAAGG TCG CCA GCTTCGCGC AGAGCTACGCGGGNCAAG CGCG CCGGCGA CTGCC GGCTG C A GCACTCCGGCGGGCCGTACGGCGA GAACATCTTCTGGGGCTCGGNGGGGCGCGCCT NGAGCGCCG CCGACGGCGGTGGGCGTCG ]
[+] EMBL AU070767 [ CCNTCCAAGGTCAGCCTCGCCGCCGTGCTCGCCGTGGCCATCTCGCTGGCCATGGCGGCCACCACCACCACCTCGGCGCAGAACACGCCGCAGGACTACGTCAACCTGCACAAC AGCGCGCGGCG GGGNA C GGCGTC GG CCCG GTG AGC TGGGACCCCAAGG TCG CCA GCNTCGCGC AGAGCTACGC GGCCAAG CGCG CCGGCGA CNGCC GGCTG C A GCACNCCGGCGGGCCGTACGGCGA GAACATCTTCTGGGGCTCGGCGGGGCGCGCCT GGAGCGCCG CCGAC GCGGT GGCGTCGTGGGTGGGCGAGAAGAAGAACNACCACNACGACACCAACACGTGCGACCC GGGCAAGGTGTGCGGCCAC NACACCCAGGTGGTGTGGCGCAAGTCGGTGCGC A TCGGCTGCGCCCGCGTCGTGTGCGCGGCGAACCGCGGGCGTGTTCA ]
[+] EMBL AU101697 [ aAACCTGCACAACAAGC CGCGGCGCGCGGA C GGCGTC GG CCCG GTG AGC TGGGACCCCAAGG TCG CCA NTTCGCGC AGA NTACGC GGCCAAG CGCN CCGGCGA CTGCC GGCTG C A GCACTCCGGCGGGCCGTACGGCGA GAACATCTTCTGGGGCTCGGCGGGGCGCGCCT GGAGCGCCG CCGAC GCGGT GGCGTCGTGGGTGGGCGAGAAGAAGAACTACCACTACGACACCAACACGTGCGACCC GGGCAAGGTGTGCGGCCAC TACACCCAGGTGGTGTGGCGCAAGTCGGTGCGCAA TCG TGCGCCCGCGTCGTGTGCGCGGCGAACCGC GGCGTGTTCATCACCTGCAACTACGACCCCCCGGGCAACTTCAACGGCGAGCGCCCGTTCCTCACCCTCGACGCCGCGGCCAAGTAGACGACCACTCACTCGTACACAGTCGTGTTGAACTGCATGCTATGTC NTGCCGCAGTACATTTCATCGATGTTTGTGACTCTGGGATCGACG TCCGTGAACAATAAAGCATGTAATGATCTTAATAATAAAa ]
[+] EMBL AU091989 [ ntTC GGCCCCCGTTTGAAGCTTGGGACCCCAAGGTTCGGCCCANGTTTCGCGCAAGAAGTACGC GCCCAAGCCGCGCCCGGCGANTTNCCGGGTTG CAA GCACTCCGGCGGCCCTTACGGCGA GAACATCTTCTGGGGCTCGGCGGGGCGCGCCTGGGAGCGCCC GCGAC GCGGT GGCGTCGTGGGTGGGCGAGAAGAAGAACTACCACTACGACACCAACACGTGCGACCC GGGCAAGGTGTGCGGCCAC TACACCCAGGTGGTGTGGCGCAAGTCGGTGCGC A TCG TGCGCCCGCGTCGTGTGCGCGGCGAACCGC GGCGTGTTCATCACCTGCAACTACGACCCCCCGGGCAACTTCAACGGCGAGCGCCCGTTCCTCACCCTCGACGCCGCGGCCAAGTAGACGACCACTCACTCGTACACAGTCGTGTTGAACTGCATGCTATGTCG TGCCGCAGTACATTTCATCGATGTTTGTGACTCTGGGATCGACG TCCGTGAACAATAAAGCATGTAATGATCTTAATAATAAATAATTTCTTGGTATATATGCAAAAAAAA ]
[+] EMBL AU162565 [ gcCCGNCCGAC GCGGT GGCGTCGTGGGTGGGCGAGAAGAAGAACTACCACTACGACACCAACACGTGCGACCC GGGCAAGGTGTGCGGCCAN TACACCCAGGTGGTGTGGCGCAAGTCGGTGCGC ANTCG TGCGCCCGCGTCGTGTGCGCGGCGAACCGC GGCGTGTTCATCACCTGCAACTACGACCCCCCGGGCAACTTCAACGGCGAGCGCCCGTTCCTCACCCTCGACGCCGCGGCCAAGTAGACGACCACTCACTCGTACACAGTCGTGTTGAACTGCATGCTATGTCG TGCCGCAGTACATTTCATCGATGTTTGTGACTCTGGGATCGACG TCCGTGAACAATAAAGCATGTAATGATCTTAATAATAAATAATTTCTTGGTATAAAAAA ]
[+] EMBL BE040617 [ gCCC GGGCAAGGTGTGCGGCCAC TACACCCAGGTGGTGTGGCGCAAGTCGGTGCGC A TCGGCTGCGCCCGCGTCGTGTGCGCGGCGAACCGC GGCGTGTTCATCACCTGCAACTACGACCCCCCGGGCAACTTCAACGGCGAGCGCCCGTTCCTCACCCTCGACGCCGCGGCCAAGTAGACGACCACTCACTCGTACACAGTCGTGTTGAACTGCATGCTATGTCGCTGCCGCAGTACATTTCATCGATGTTTGTGACTCTGGGATCGACG TCCGTGAACAATAAAGCATGTAATGATCTTAATAATAAATAATTTCTTGGTNAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAAAAAA]
consensusID : consensus_15206#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 760 fasta sequence
[GTAAGAAAGCAGCTACGTTTACAAGCAGAGATGGAGGCATCCAAGCTAGCAATCTGCAGCTTGTTCGTGCTCGCCGTGGTAGCCGCTACAATGTTTCACTGCTCCGATGCCCAGAACTCGCCGCAGGACTACCTGTCGCCGCAGAACGCGGCCCGGTCCGCCGTCGGCGTGGGTCCGATGAGCTGGAGCACGAAGCTGCAGGGGTTCGCGGAGGACTACGCGAGGCAGCGGAAGGGCGACTGCCGGCTGCAGCACTCGGGCGGGCCGTACGGTGAGAACATCTTCTGGGGCTCCGCCGGCGCCGACTGGACGGCCGCGGACGCGGTGCGGTCGTGGGTGGACGAGAAGAAGTACTACAACTACGCCAGCAACAGCTGCGCCGCCGGGAAGGTGTGCGGCCACTACACGCAGGTGGTGTGGCGCGACTCCACCAACGTCGGCTGCGCCCGCGTGCGGTGCGACGCCAACCGCGGCATCTTCATCATCTGCAACTACGAGCCCCGTGGCAACATCGTTGGCCGCAGGCCCTACTGATCATACGACGTTGTTGCAACAAGCTATATATATGTGTCTAGCACGCATGCATCGTCCCTCGCTCGTTACATGCACGCGCTGTGTGTTTGTGTTATGTCTTAATTAGAGGGAGTAATAATAACATTAGTCAAATCAAATAAGTGAGTAAATGATGTACTTCAGCTTGGATTGAAATAAAGACAAAACCACGATCGATGCGTCTTGCTCTTTTCTAAAAAAAAAAAAA]
[+] EMBL AK121108 [GTAAGAAAGCAGCTACGTTTACAAGCAGAGATGGAGGCATCCAAGCTAGCAATCTGCAGCTTGTTCGTGCTCGCCGTGGTAGCCGCTACAATGTTTCACTGCTCCGATGCCCAGAACTCGCCGCAGGACTACCTGTCGCCGCAGAACGCGGCCCGGTCCGCCGTCGGCGTGGGTCCGATGAGCTGGAGCACGAAGCTGCAGGGGTTCGCGGAGGACTACGCGAGGCAGCGGAAGGGCGACTGCCGGCTGCAGCACTCGGGCGGGCCGTACGGTGAGAACATCTTCTGGGGCTCCGCCGGCGCCGACTGGACGGCCGCGGACGCGGTGCGGTCGTGGGTGGACGAGAAGAAGTACTACAACTACGCCAGCAACAGCTGCGCCGCCGGGAAGGTGTGCGGCCACTACACGCAGGTGGTGTGGCGCGACTCCACCAACGTCGGCTGCGCCCGCGTGCGGTGCGACGCCAACCGCGGCATCTTCATCATCTGCAACTACGAGCCCCGTGGCAACATCGTTGGCCGCAGGCCCTACTGATCATACGACGTTGTTGCAACAAGCTATATATATGTGTCTAGCACGCATGCATCGTCCCTCGCTCGTTACATGCACGCGCTGTGTGTTTGTGTTATGTCTTAATTAGAGGGAGTAATAATAACATTAGTCAAATCAAATAAGTGAGTAAATGATGTACTTCAGCTTGGATTGAAATAAAGACAAAACCACGATCGATGC ]
[+] EMBL CB662448 [ AGATGGAGGCATCCAAGCTAGCAATCTGCAGCTTGTTCGTGCTCGCCGTGGTAGCCGCTACAATGTTTCACTGCTCCGATGCCCAGAACTCGCCGCAGGACTACCTGTCGCCGCAGAACGCGGCCCGGTCCGCCGTCGGCGTGGGTCCGATGAGCTGGAGCACGAAGCTGCAGGGGTTCGCGGAGGACTACGCGAGGCAGCGGAAGGGCGACTGCCGGCTGCAGCACTCGGGCGGGCCGTACGGTGAGAACATCTTCTGGGGCTCCGCCGGCGCCGACTGGACGGCCGCGGACGCGGTGCGGTCGTGGGTGGACGAGAAGAAGTACTACAACTACGCCAGCAACAGCTGCGCCGCCGGGAAGGTGTGCGGCCACTACACGCAGGTGGTGTGGCGCGACTCCACCAACGTCGGCTGCGCCCGCGTGCGGTGCGACGCCAACCGCGGCATCTTCATCATCTGCAACTACGAGCCCCGTGGCAACATCGTTGGCCGCAGGCCCTACTGATCATACGACGTTGTTGCAACAAGCTATATATATGTGTCTAGCACGCATGCATCGTCCCTCGCTCGTTACATGCACGCGCTGTGTGTTTGTGTTATGTCTTAATTAGAGGGAGTAATAATAACATTAGTCAGATCAAATAAGTGAGTAAATGATGTACTTCAGCTTGGATTGAAATAAAGACAAAACCACGATCGATGCGTCTTGCTCTTTTC ]
[+] EMBL CB662446 [ AGATGGAGGCATCCAAGCTAGCAATCTGCAGCTTGTTCGTGCTCGCCGTGGTAGCCGCTACAATGTTTCACTGCTCCGATGCCCAGAACTCGCCGCAGGACTACCTGTCGCCGCAGAACGCGGCCCGGTCCGCCGTCGGCGTGGGTCCGATGAGCTGGAGCACGAAGCTGCAGGGGTTCGCGGAGGACTACGCGAGGCAGCGGAAGGGCGACTGCCGGCTGCAGCACTCGGGCGGGCCGTACGGTGAGAACATCTTCTGGGGCTCCGCCGGCGCCGACTGGACGGCCGCGGACGCGGTGCGGTCGTGGGTGGACGAGAAGAAGTACTACAACTACGCCAGCAACAGCTGCGCCGCCGGGAAGGTGTGCGGCCACTACACGCAGGTGGTGTGGCGCGACTCCACCAACGTCGGCTGCGCCCGCGTGCGGTGCGACGCCAACCGCGGCATCTTCATCATCTGCAACTACGAGCCCCGTGGCAACATCGTTGGCCGCAGGCCCTACTGATCATACGACGTTGTTGCAACAAGCTATATATATGTGTCTAGCACGCATGCATCGTCCCTCGCTCGTTACATGCACGCGCTGTGTGTTTGTGTTATGTCTTAATTAGAGGGAGTAATAATAACATTAGTCAAATCAAATAAGTGAGTAAATGATGTACTTCAGCTTGGATTGAAATAAAGACAAAACCACGATCGATGCGTCTT ]
[+] EMBL CB662447 [ AGACGGAGGCATCCAAGCTAGCAATCTGCAGCTTGTTCGTGCTCGCCGTGGTAGCCGCTACAATGTTTCACTGCTCCGATGCCCAGAACTCGCCGCAGGACTACCTGTCGCCGCAGAACGCGGCCCGGTCCGCCGTCGGCGTGGGTCCGATGAGCTGGAGCACGAAGCTGCAGGGGTTCGCGGAGGACTACGCGAGGCAGCGGAAGGGCGACTGCCGGCTGCAGCACTCGGGCGGGCCGTACGGTGAGAACATCTTCTGGGGCTCCGCCGGCGCCGACTGGACGGCCGCGGACGCGGTGCGGTCGTGGGTGGACGAGAAGAAGTACTACAACTACGCCAGCAACAGCTGCGCCGCCGGGAAGGTGTGCGGCCACTACACGCAGGTGGTGTGGCGCGACTCCACCAACGTCGGCTGCGCCCGCGTGCGGTGCGACGCCAACCGCGGCATCTTCATCATCTGCAACTACGAGCCCCGTGGCAACATCGTTGGCCGCAGGCCCTACTGATCATACGACGTTGTTGCAACAAGCTATATATATGTGTCTAGCACGCATGCATCGTCCCTCGCTCGTTACATGCACGCGCTGTGTGTTTGTGTTATGTCTTAATTAGAGGGAGTAATAATAACATTAGTCAAATCAAATAAGTGAGTAAATGATGTACTTCAGCTTGGATTGAAATAAAGACAAAACCACGATCGATGCGTCTT ]
[+] EMBL CF309578 [ gagtagaaaACGTTGTTGCAACAAGCTATATATATGTGTCTAGCACGCATGCATCGTCCCTCGCTCGTTACATGCACGCGCTGTGTGTTTGTGTTATGTCTTAATTAGAGGGAGTAATAATAACATTAGTCAAATCAAATAAGTGAGTAAATGATGTACTTCAGCTTGGATTGAAATAAAGACAAAACCACGATCGATGCGTCTTGCTCTTTTCTAAAAAAAAAAAAA]
consensusID : consensus_15206#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 611 fasta sequence
[TCTGCAGCTTGTTCGTGCTCGCCCGTGGTACCCGCTACAATGTTTCACTGCTCCGATGCCCAGAACTCGCCGCAGGACTACCTGTCGCCGCAGAACGCGGCCCGGTCCGCCGTCGGCGGGCCGTACGGTGAGAACATCTTCTGGGGCTCCGCCGGCGCCGACTGGACGGCCCGCGGACGCGGTGCGGTCGTGGGTGGACGAGAAGAAGTACTACAACTACGCCAGCAACAGCTGCGCCGCCGGGAAGGTGTGCGGCCACTACACGCAGGTGGTGTGGCGCGACTCCACCAACGTCGGCTGCGCCCGCGTGCGGTGCGACGCCAACCGCGGCATCTTCATCATCTGCAACTACGAGCCCCGTGGCAACATCGTTGGCCGCAGGCCCTACTGATCATACGACGTTGTTGCAACAAGCTATATATATGTGTCTAGCACGCATGCATCGTCCCTCGCTCGTTACATGCACGCGCTGTGTGTTTGTGTTATGTCTTAATTAGAGGGAGTAATAATAACATTAGTCAAATCAAATAAGTGAGTAAATGATGTACTTCAGCTTGGATTGAAATAAAGACAAACCCCGATCGATGCGTCTTGCTCTTTTCTAAAAAAAA]
[+] EMBL BI799765 [TCTGCAGCTTGTTCGTGCTCGCCCGTGGTACCCGCTACAATGTTTCACTGCTCCGATGCCCAGAACTCGCCGCAGGACTACCTGTCGCCGCAGAACGCGGCCCGGTCCGCCGTCGGCGGGCCGTACGGTGAGAACATCTTCTGGGGCTCCGCCGGCGCCGACTGGACGGCCCGCGGACGCGGTGCGGTCGTGGGTGGACGAGAAGAAGTACTACAACTACGCCAGCAACAGCTGCGCCGCCGGGAAGGTGTGCGGCCACTACACGCAGGTGGTGTGGCGCGACTCCACCAACGTCGGCTGCGCCCGCGTGCGGTGCGACGCCAACCGCGGCATCTTCATCATCTGCAACTACGAGCCCCGTGGCAACATCGTTGGCCGCAGGCCCTACTGATCATACGACGTTGTTGCAACAAGCTATATATATGTGTCTAGCACGCATGCATCGTCCCTCGCTCGTTACATGCACGCGCTGTGTGTTTGTGTTATGTCTTAATTAGAGGGAGTAATAATAACATTAGTCAAATCAAATAAGTGAGTAAATGATGTACTTCAGCTTGGATTGAAATAAAGACAAACCCCGATCGATGCGTCTTGCTCTTTTCTAAAAAAAA]
consensusID : consensus_15206#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 604 fasta sequence
[GGATTCCGCATTATACAAGCAGAGATGGAGCATCCAAGCTAGCATCTGCAGCTTGTTCGTGCTCGCCGTGGTAGCCGCTACAATGTTTCACTGCTCCGATGCCCAGANNTCGCCGCAGGACTACCTGTCCCCGNGGAACGCGGCCCGGTCCCCCATCNGCGTGGGTCCGATGANCTGGANCACNAAACTGCNCGGGTTCGCGGAAGACTACCCCANGCAGCGGAANGGCGACTGCCGGCTGCAGCACTCGGGCGGGCCGTACGGTGAGAACATCTTCTGGGGCTCCNCCGGCGCCNACTGGACGGCCGCGGACCCNGTGCGGTCNTGGGTGGACCAAAAAAAATTTTNTNCTNCNCCAGCAACANCTGCCCCCCGGGAAAGTGTNCGGCCACTACACCCANGTGGTGTNGCGCGACTCCACCAACGTCCGCTGCNCCCCCCNTGCGGTGCNACACCAACNCGGGATCTTCNTCNTCTGCAACTACNAACCCCCGTGGCNACATCCTTGGGCCCANGCCCTACTGATCATACCANCTTGTTGCCACNAANCTATATATATTTTTTCTANCACGCATGCATCNTCCTCCCTCCTTANATGCACCCC]
[+] EMBL BE228379 [GGATTCCGCATTATACAAGCAGAGATGGAGCATCCAAGCTAGCATCTGCAGCTTGTTCGTGCTCGCCGTGGTAGCCGCTACAATGTTTCACTGCTCCGATGCCCAGANNTCGCCGCAGGACTACCTGTCCCCGNGGAACGCGGCCCGGTCCCCCATCNGCGTGGGTCCGATGANCTGGANCACNAAACTGCNCGGGTTCGCGGAAGACTACCCCANGCAGCGGAANGGCGACTGCCGGCTGCAGCACTCGGGCGGGCCGTACGGTGAGAACATCTTCTGGGGCTCCNCCGGCGCCNACTGGACGGCCGCGGACCCNGTGCGGTCNTGGGTGGACCAAAAAAAATTTTNTNCTNCNCCAGCAACANCTGCCCCCCGGGAAAGTGTNCGGCCACTACACCCANGTGGTGTNGCGCGACTCCACCAACGTCCGCTGCNCCCCCCNTGCGGTGCNACACCAACNCGGGATCTTCNTCNTCTGCAACTACNAACCCCCGTGGCNACATCCTTGGGCCCANGCCCTACTGATCATACCANCTTGTTGCCACNAANCTATATATATTTTTTCTANCACGCATGCATCNTCCTCCCTCCTTANATGCACCCC]
consensusID : consensus_15206#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence
[CAGGAATTCGGGAGCGAGGCACCTTCCAAGGTCAGCCTCGCCGCCGTGCTCGCCGTGGGGTCGGGCTGGCCATGGCGGCCACCACCACCACCTCGGCGCAGAACACGCCGCAGGACTACGTCAACCTGCACAACAGCGCGCGGCGCGCGGACGGCGTCGGCCCGGTGAGCTGGGACCCCAAGGTCGCCAGCTTCGCGCAGAGCTACGCGGCCAAGCGCGCCGGCGACTGCCGGCTGCAGCACTCCGGCGGGCCGTACGGCGAGAACATCTTCTGGGGCTCGGCGGGGCGCGCCTGGAGCGCCGCCGACGCGGTGGCGTTCGTGGGTGGGCGAGAAGAAGAACTACCACTACGACACCAACACGTGCGACCCGGGCAAGGTGTGCGGGCACTACACCCAGGTGGTGGTGGCGCAAGTCGGTGCGCATCGGCTGCGCCCCGCGTCGTGTGCGCCGGGAAACCGGGGGGTGTTAATCACCTGGTAACTTACGACCCCNCCGGGGCAACTTTAACGGGGGAGCGCCCGGGTTCTTAACCCTTTACCGCCGTGGGCAAGTTAGAACACACCTCACTTCTTTCACAGTCGTG]
[+] EMBL BE039211 [CAGGAATTCGGGAGCGAGGCACCTTCCAAGGTCAGCCTCGCCGCCGTGCTCGCCGTGGGGTCGGGCTGGCCATGGCGGCCACCACCACCACCTCGGCGCAGAACACGCCGCAGGACTACGTCAACCTGCACAACAGCGCGCGGCGCGCGGACGGCGTCGGCCCGGTGAGCTGGGACCCCAAGGTCGCCAGCTTCGCGCAGAGCTACGCGGCCAAGCGCGCCGGCGACTGCCGGCTGCAGCACTCCGGCGGGCCGTACGGCGAGAACATCTTCTGGGGCTCGGCGGGGCGCGCCTGGAGCGCCGCCGACGCGGTGGCGTTCGTGGGTGGGCGAGAAGAAGAACTACCACTACGACACCAACACGTGCGACCCGGGCAAGGTGTGCGGGCACTACACCCAGGTGGTGGTGGCGCAAGTCGGTGCGCATCGGCTGCGCCCCGCGTCGTGTGCGCCGGGAAACCGGGGGGTGTTAATCACCTGGTAACTTACGACCCCNCCGGGGCAACTTTAACGGGGGAGCGCCCGGGTTCTTAACCCTTTACCGCCGTGGGCAAGTTAGAACACACCTCACTTCTTTCACAGTCGTG]
consensusID : consensus_15206#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 585 fasta sequence
[TTTTTTTTTTTAGAAAAGAGCAAGACGCATCGATCGTGGTTTTGTCTTTATTTCAATCCAAGCTGAAGTACATCATTTACTCACTTATTTGATTTGACTAATGTTATTATTACTCCCTCTAATTAAGACATAACACAAACACACAGCGCGTGCATGTAACGAGCGAGGGACGATGCATGCGTGCTAGACACATATATATAGCTTGTTGCAACAACGTCGTATGATCAGTAGGGCCTGCGGCCAACGATGTTGCCACGGGGCTCGTANTTGCAGATGATGAAAAATGCCGCGGTTGGCGTCCACCGCACGCGGGCGCAGCCGAAGTTTGGTGGANTCGCGCCACACCACCTGGCNTTTANTGGCCGCACACCTTCCCCGGGGGGCAACTGTTGCTGGGGTTATTGTTATAATCCTCNCGTCCACCAANAACGCACCGNTCCGCGGCGTCANTCGGGGCCGGGGAACCCAAANAATTCTCCCTTCGGCCCCCAATNGTGAACGGGATCCCCTCCNTGCCCCNTTTCNCCGAACCTGNTTCTNNCANNCNGAACNCCAAGGAAGGCNTTTTGGAAGTTCCCGGAATNG]
[+] EMBL AA753311 [TTTTTTTTTTTAGAAAAGAGCAAGACGCATCGATCGTGGTTTTGTCTTTATTTCAATCCAAGCTGAAGTACATCATTTACTCACTTATTTGATTTGACTAATGTTATTATTACTCCCTCTAATTAAGACATAACACAAACACACAGCGCGTGCATGTAACGAGCGAGGGACGATGCATGCGTGCTAGACACATATATATAGCTTGTTGCAACAACGTCGTATGATCAGTAGGGCCTGCGGCCAACGATGTTGCCACGGGGCTCGTANTTGCAGATGATGAAAAATGCCGCGGTTGGCGTCCACCGCACGCGGGCGCAGCCGAAGTTTGGTGGANTCGCGCCACACCACCTGGCNTTTANTGGCCGCACACCTTCCCCGGGGGGCAACTGTTGCTGGGGTTATTGTTATAATCCTCNCGTCCACCAANAACGCACCGNTCCGCGGCGTCANTCGGGGCCGGGGAACCCAAANAATTCTCCCTTCGGCCCCCAATNGTGAACGGGATCCCCTCCNTGCCCCNTTTCNCCGAACCTGNTTCTNNCANNCNGAACNCCAAGGAAGGCNTTTTGGAAGTTCCCGGAATNG]
consensusID : consensus_15206#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 576 fasta sequence
[GCAGGAATTGGGCAGGAGCAGAAAATGGCACCTTCCAGGTCAGCCTCGCCGCCGTGCTGGCCGGGGCCATCTCGCTGGCCATGGCGGCCACCACCACCACCTCGGCGCAGAACACGCCGCAGGACTACGTCAACCTGCACAACAGCGCGCGGCGCGCGGACGGCGTCGGCCCGGTGAGCTGGGACCCCAAGGTCGCCAGCTTCGCGCAGAGCTACGCGGCCAAGCGCGCCGGCGACTGCCGGCTGCAGCACTCCGGCGGGCCGTACGGCGAGAACATCTTCTGGGGCTCGGCGGGGCGCGCCTGGAGCGCCGCCGACGCGGTGGCGTCGTGGGTGGGCGAGAAGAAGAACTACCACTACGACACCAACACGTGCGACCCGGGCAAGGTGTGCGGCCACTACACCCAGGTGGTGTGGCGCAAGTCGGTGCGCATCGGGTGGCGCCCGCGTCGTGTGCGCGGCGAACCGCGGCGTGTTCATTAACTGGAACTAACGACCCCCCGGGGCAACTTAAACGGGGAGGCGCCCGTTCCTTACCCTTGACGCCGCGGGCAAGTAGACGACCACTCACTTCTCC]
[+] EMBL BE039223 [GCAGGAATTGGGCAGGAGCAGAAAATGGCACCTTCCAGGTCAGCCTCGCCGCCGTGCTGGCCGGGGCCATCTCGCTGGCCATGGCGGCCACCACCACCACCTCGGCGCAGAACACGCCGCAGGACTACGTCAACCTGCACAACAGCGCGCGGCGCGCGGACGGCGTCGGCCCGGTGAGCTGGGACCCCAAGGTCGCCAGCTTCGCGCAGAGCTACGCGGCCAAGCGCGCCGGCGACTGCCGGCTGCAGCACTCCGGCGGGCCGTACGGCGAGAACATCTTCTGGGGCTCGGCGGGGCGCGCCTGGAGCGCCGCCGACGCGGTGGCGTCGTGGGTGGGCGAGAAGAAGAACTACCACTACGACACCAACACGTGCGACCCGGGCAAGGTGTGCGGCCACTACACCCAGGTGGTGTGGCGCAAGTCGGTGCGCATCGGGTGGCGCCCGCGTCGTGTGCGCGGCGAACCGCGGCGTGTTCATTAACTGGAACTAACGACCCCCCGGGGCAACTTAAACGGGGAGGCGCCCGTTCCTTACCCTTGACGCCGCGGGCAAGTAGACGACCACTCACTTCTCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15206#1 -----------------------GTAAGAAAGCAGCTACGTTTACAAGCAGAGATGGAGG 37
consensus_15206#2 ------------------------------------------------------------
consensus_15206#3 -----------------------------GGATTCCGCATTATACAAGCAGAGATGGAG- 30
consensus_15206#0 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACAACACGAGACAGAAAATG--GCAC 58
consensus_15206#6 --------------------------GCAGGAATTGGGCAGGAG-CAGAAAATG--GCAC 31
consensus_15206#4 --------------------------------------CAGGAATTCGGGAGCGAGGCAC 22
consensus_15206#5 ------------------------------TTTTTTTTTTTAGAAAAGAGCAAGACGCAT 30
consensus_15206#1 CATCCAAGCTAGCAATCTGCAGCTTGTTCGTGCTCGCC-GTGGTAGCCGCTACAATGTTT 96
consensus_15206#2 ---------------TCTGCAGCTTGTTCGTGCTCGCCCGTGGTACCCGCTACAATGTTT 45
consensus_15206#3 CATCCAAGCTAGCA-TCTGCAGCTTGTTCGTGCTCGCC-GTGGTAGCCGCTACAATGTTT 88
consensus_15206#0 CTTCCAAGGTCAGCCTCGCCGCCGTGCTCGCCGTGGCC-ATCTCGCTGGCCATGGCGGCC 117
consensus_15206#6 CTTCCA-GGTCAGCCTCGCCGCCGTGCTGGCCGGGGCC-ATCTCGCTGGCCATGGCGGCC 89
consensus_15206#4 CTTCCAAGGTCAGCCTCGCCGCCGTGCTCGCCGTGGG--GTCGGGCTGGCCATGGCGGCC 80
consensus_15206#5 CGATCGTGGTTTTGTCTTTATTTCAATCCAAGCTGAAGTACATCATTTACTCACTTATTT 90
*
consensus_15206#1 --CACTGCT-CCGATGCCCAGAACTCGCCGCAGGACTACCTGTCGCCGCAGAACGCGGCC 153
consensus_15206#2 --CACTGCT-CCGATGCCCAGAACTCGCCGCAGGACTACCTGTCGCCGCAGAACGCGGCC 102
consensus_15206#3 --CACTGCT-CCGATGCCCAGANNTCGCCGCAGGACTACCTGTCCCCGNGGAACGCGGCC 145
consensus_15206#0 ACCACCACCACCTCGGCGCAGAACACGCCGCAGGACTACGTCAACCTGCACAACAGCGCG 177
consensus_15206#6 ACCACCACCACCTCGGCGCAGAACACGCCGCAGGACTACGTCAACCTGCACAACAGCGCG 149
consensus_15206#4 ACCACCACCACCTCGGCGCAGAACACGCCGCAGGACTACGTCAACCTGCACAACAGCGCG 140
consensus_15206#5 GATTTGACTAATGTTATTATTACTCCCTCTAATTAAGACATAACACAAACACACAGCGCG 150
* * * * * * ** * * ** **
consensus_15206#1 CGGTCCGCCGTCGGCGTGGGTCCGATGAGC---TGGAGCACGAAGCTGCAGGGGTTCGCG 210
consensus_15206#2 CGGTCCGCCGTCGGCG-------------------------------------------- 118
consensus_15206#3 CGGTCCCCCATCNGCGTGGGTCCGATGANC---TGGANCACNAAACTGCNCGGGTTCGCG 202
consensus_15206#0 CGGCGCGGGGACGGCGTCGGCCCGGTGAGC---TGGGACCCCAAGGTCGCCAGCTTCGCG 234
consensus_15206#6 CGGCGCGCGGACGGCGTCGGCCCGGTGAGC---TGGGACCCCAAGGTCGCCAGCTTCGCG 206
consensus_15206#4 CGGCGCGCGGACGGCGTCGGCCCGGTGAGC---TGGGACCCCAAGGTCGCCAGCTTCGCG 197
consensus_15206#5 TG-CATGTAACGAGCGAGGGAC-GATGCATGCGTGCTAGACACATATATATAGCTTGTTG 208
* ***
consensus_15206#1 GAGGACTACGCGAGGCAGCGGAAGGGCGACTGCCGGCTGCAGCACTCGGGCGGGCCGTAC 270
consensus_15206#2 ----------------------------------------------------GGCCGTAC 126
consensus_15206#3 GAAGACTACCCCANGCAGCGGAANGGCGACTGCCGGCTGCAGCACTCGGGCGGGCCGTAC 262
consensus_15206#0 CAGAGCTACGCGGCCAAGCGCGCCGGCGACTGCCGGCTGCAGCACTCCGGCGGGCCGTAC 294
consensus_15206#6 CAGAGCTACGCGGCCAAGCGCGCCGGCGACTGCCGGCTGCAGCACTCCGGCGGGCCGTAC 266
consensus_15206#4 CAGAGCTACGCGGCCAAGCGCGCCGGCGACTGCCGGCTGCAGCACTCCGGCGGGCCGTAC 257
consensus_15206#5 CA--ACAACGTCGTATGATCAGTAGG-GCCTGCGGCCAACGATGTTGCCACGGGGCTCGT 265
** *
consensus_15206#1 GGTGAGAACATCTTCTGGGGCTCCGCCGGCGCCGACTGGACGGCC-GCGGACGCGGTGCG 329
consensus_15206#2 GGTGAGAACATCTTCTGGGGCTCCGCCGGCGCCGACTGGACGGCCCGCGGACGCGGTGCG 186
consensus_15206#3 GGTGAGAACATCTTCTGGGGCTCCNCCGGCGCCNACTGGACGGCC-GCGGACCCNGTGCG 321
consensus_15206#0 GGCGAGAACATCTTCTGGGGCTCGGCGGGGCGCGCCTGGAGCGCC-GCCGACGCGGTGGC 353
consensus_15206#6 GGCGAGAACATCTTCTGGGGCTCGGCGGGGCGCGCCTGGAGCGCC-GCCGACGCGGTGGC 325
consensus_15206#4 GGCGAGAACATCTTCTGGGGCTCGGCGGGGCGCGCCTGGAGCGCC-GCCGACGCGGTGGC 316
consensus_15206#5 ANTT-GCAGATGATGAAAAATGCCGCGGTTGGCGTCC--ACCGCACGCGGGCGCAGC--- 319
* * ** * * * * * * * ** ** * * * *
consensus_15206#1 GT-CGTGGGTGGACGAGAAGAAGTACTACAACTACGCCAGCAACAGCTGCGCCGCCGGGA 388
consensus_15206#2 GT-CGTGGGTGGACGAGAAGAAGTACTACAACTACGCCAGCAACAGCTGCGCCGCCGGGA 245
consensus_15206#3 GT-CNTGGGTGGACCAAAAAAAATTTTNTN-CTNCNCCAGCAACANCTGC-CCCCCGGGA 378
consensus_15206#0 GT-CGTGGGTGGGCGAGAAGAAGAACTACCACTACGACACCAACACGTGCGACCCGGGCA 412
consensus_15206#6 GT-CGTGGGTGGGCGAGAAGAAGAACTACCACTACGACACCAACACGTGCGACCCGGGCA 384
consensus_15206#4 GTTCGTGGGTGGGCGAGAAGAAGAACTACCACTACGACACCAACACGTGCGACCCGGGCA 376
consensus_15206#5 ---CGAAGTTTGGTGGANTCGCGCCACACCACCTGGCNTTTANTGGCCGCACACCTTCCC 376
* * * * * * ** *
consensus_15206#1 AGGTGTGCGGCCACTACACGCAGGTGGTG-TGGCGCGACTCCACCAACGTCGGCTGCGCC 447
consensus_15206#2 AGGTGTGCGGCCACTACACGCAGGTGGTG-TGGCGCGACTCCACCAACGTCGGCTGCGCC 304
consensus_15206#3 AAGTGTNCGGCCACTACACCCANGTGGTG-TNGCGCGACTCCACCAACGTCCGCTGCNCC 437
consensus_15206#0 AGGTGTGCGGCCACTACACCCAGGTGGTG-TGGCGCAAGTCGGTGCGCATCGGCTG-CGC 470
consensus_15206#6 AGGTGTGCGGCCACTACACCCAGGTGGTG-TGGCGCAAGTCGGTGCGCATCGGGTGGCGC 443
consensus_15206#4 AGGTGTGCGGGCACTACACCCAGGTGGTGGTGGCGCAAGTCGGTGCGCATCGGCTGCGCC 436
consensus_15206#5 CGGGGGGCAACTGTTGC-TGGGGTTATTGTTATAATCCTCNCGTCCACCAANAACGCA-C 434
* * * * * * ** * * * *
consensus_15206#1 CGC-GTGCGGTGCGA-CGCCAACCGCGGCATCTTCATCATCTGC-AACTA-CGAGCCCC- 502
consensus_15206#2 CGC-GTGCGGTGCGA-CGCCAACCGCGGCATCTTCATCATCTGC-AACTA-CGAGCCCC- 359
consensus_15206#3 CCCCNTGCGGTGCNA-CACCAACN-CGGGATCTTCNTCNTCTGC-AACTA-CNAACCCCC 493
consensus_15206#0 CCGCGTCGTGTGCGC-GGCGAACCGCGGCGTGTTCATCACCTGC-AACTA-CGACCCCCC 527
consensus_15206#6 CCGCGTCGTGTGCGC-GGCGAACCGCGGCGTGTTCATTAACTGG-AACTAACGACCCCCC 501
consensus_15206#4 CCGCGTCGTGTGCGCCGGGAAACCGGGGGGTGTTAATCACCTGGTAACTTACGACCCCNC 496
consensus_15206#5 CGNTCCGCGGCGTCANTCGGGGCCGGGGAACCCAAANAATTCTC---CCTTCGGCCCCCA 491
* * * * ** * * ***
consensus_15206#1 -GTGGCAACATCGTTGGCCGCAGGCCCTA-CTGATCATACGACGTTGTTGCAACAA-GCT 559
consensus_15206#2 -GTGGCAACATCGTTGGCCGCAGGCCCTA-CTGATCATACGACGTTGTTGCAACAA-GCT 416
consensus_15206#3 -GTGGCNACATCCTTGGGCCCANGCCCTA-CTGATCATACCANCTTGTTGCCACNAANCT 551
consensus_15206#0 -GGG-CAACTTCAACGGCGAG-CGCCCG--TTCCTCACCCTCGAC-GCCGCGGCCAAGT- 580
consensus_15206#6 -GGGGCAACTTAAACGGGGAGGCGCCCG--TTCCTTACCCTTGAC-GCCGCGGGCAAGT- 556
consensus_15206#4 CGGGGCAACTTTAACGGGGGAGCGCCCGGGTTCTTAACCCTTTACCGCCGTGGGCAAGTT 556
consensus_15206#5 ATNGTGAACGGGATCCCCTCCNTGCCCCNTTTCNCCGAACCTGNTTCTNNCANNCNGAAC 551
* ** **** * *
consensus_15206#1 ATATATATGTGT-CTAGCA-CGCATGCATCGTCCCTCGCTCGTTACAT-GCACGCGCTGT 616
consensus_15206#2 ATATATATGTGT-CTAGCA-CGCATGCATCGTCCCTCGCTCGTTACAT-GCACGCGCTGT 473
consensus_15206#3 ATATATATTTTTTCTANCA-CGCATGCATCNTCC-TCCCTCCTTANAT-GCACCCC---- 604
consensus_15206#0 AGACGACCACTCACTCGTA-CACAGTCGTGTTGAACTGCATGCTATGTCGCTGCCGCAGT 639
consensus_15206#6 AGACGACCACTCACTTCTC-C--------------------------------------- 576
consensus_15206#4 AGAACACACCTCACTTCTTTCACAGTCGTG------------------------------ 586
consensus_15206#5 NCCAAGGAAGGCNTTTTGGAAGTTCCCGGAATNG-------------------------- 585
*
consensus_15206#1 GTGTTTGTGTTATGTCTTAATTAGAGGGAGTAATAATAACATTAGTCAAATCAAATAAGT 676
consensus_15206#2 GTGTTTGTGTTATGTCTTAATTAGAGGGAGTAATAATAACATTAGTCAAATCAAATAAGT 533
consensus_15206#3 ------------------------------------------------------------
consensus_15206#0 ACATTTCATCGATGTTTGTGACTCTGGGATCGACGTCCGTGAACAATAAAGCATGTAATG 699
consensus_15206#6 ------------------------------------------------------------
consensus_15206#4 ------------------------------------------------------------
consensus_15206#5 ------------------------------------------------------------
consensus_15206#1 GAGTAAATGATGTACTTCAGCTTGGATTGAAATAAAGACAAAACCACGATCGATGCGTCT 736
consensus_15206#2 GAGTAAATGATGTACTTCAGCTTGGATTGAAATAAAGACAAACCC-CGATCGATGCGTCT 592
consensus_15206#3 ------------------------------------------------------------
consensus_15206#0 ATCTTAATAATAAATAATTTCTTGGTNAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAAAA 759
consensus_15206#6 ------------------------------------------------------------
consensus_15206#4 ------------------------------------------------------------
consensus_15206#5 ------------------------------------------------------------
consensus_15206#1 TGCTCTTTTCTAAAAAAAAAAAAA 760
consensus_15206#2 TGCTCTTTTCTAAAAAAAA----- 611
consensus_15206#3 ------------------------
consensus_15206#0 AAAA-------------------- 763
consensus_15206#6 ------------------------
consensus_15206#4 ------------------------
consensus_15206#5 ------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||