These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15208#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1322 fasta sequence [CTGACCTAAACCCTAGCTCGCCTCCTCCTCCTCCTCCTCGCCGCCGCCGCCGCCGCCGTCGCCGTCGAGCACCACCCGAGCAGCCATGGCGAATCCGGCAGCAGCAGCAGGGCCGTCGGGGGGAGCGAGGTCGTTCCTGCAGGCCGTGTCGACCGTCACCGAGGAGGCGCCGTCGCCGCTCCGCGTCGTGCAGATGGAGGGCCTGGCTGTCCTGAAGATCATTAAGCACTGTGAGGAGTTTGCACCTGCTCTAGTTACAGGCCAACTGCTTGGTTTGGATGTTGGCAGTGTTCTGGAAGTAACGAACTGTTTTCCTTTCCCAATGAGAGAAGATGATG-AAGAGGCAGATGCAG-ATGGTGCAAATTATCAGC-TTGA-GATGATGAGGTGC-TTGAGGG-AGGTTAATG-TTG-ACAAT-AACACTG-TTGGAT-GGTATCAATCTT-GCTTGCTTGGATCTTTTCAGACTGTGGAACTGATTGAAACGTTTATGAACTATCAGGAGAATATCCGGAGATGTGTGTGCATCGTTTATGACCCATCTAGGTCAAATCAGGGGGTTCTAGCTCTCAAGGCCTTGAAACTCACAGATTCATTCATGGATCTTTACCGTAACAATGGTTTAACTGGAGAGAAGTTAAGAGAGAAGAAATTGTCATGGGTTGATATTTTTGAGGAGATACCGATTAAAGTTTCCAACTCTGCACTTGTCAGTGCCTTCATGACGGAGCTGGAACCTGAATCACCTGTTTCACAGTGTGATTTTGACCGCCTTAAATTGTCAACTGCTCCATTCATGGAAAGGAACTTGGAATTTCTGATTGGCTGCATGGATGATCTTTCATCAGAGCAGAACAAGTTCCAATATTACTATCGCAATGTCTCAAGACAGCAGTCACAGCAGCAGGCATGGCTCCAAAAGAGAAGGCAAGAGAATATGGCAAGAAAAGCTGCTGGAGAGGAGCCATTGCCAGAAGAAGACCCATCCAATCCCATTTTCAAGCCGATTCCTGAGCCGTCACGTTTGGAGGGTTATCTTGTAACCAATCAGATCTCCAGTTACTGCAACCATATTAATGGGGTTGCTGGTCAGAATTTCAACAGGCTCTACTTAATGAAGGCCTTGCAGGAGGACTAGATGGCTAGGTGATGAGTGGCAACTGTTATGATATTTGACTTGCTAGATGTCAATTTTGCCTTGTGCTTTATGCCTATTAT-ACCTTTTGCCAAGAAAAGCCAGAGCCTATTGTACCAATCTTACGGATACAAAGTCCGCAGTATGATAAATTGATTTTATCGCTTGGTTGGGTCAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU067891 [CTGACCTAAACCCTAGCTCGCCTCCTCCTCCTCCTCCTCGCCGCCGCCGCCGCCGCCGTCGCCGTCGAGCACCACCCGAGCAGCCATGGCGAATCCGGCAGCAGCAGCAGGGCCGTCGGGGGGAGCGAGGTCGTTCCTGCAGGCCGTGTCGACCGTCACCGAGGAGGCGCCGTCGCCGCTCCGCGTCGTGCAGATGGAGGGCCTGGCTGTCCTGAAGATCATTAAGCACTGTGAGGAGTTTGCACCTGCTCTAGTTACAGGCCAACTGCTTGGTTTGGATGTTGGCAGTGTTCTGGAAGTAACGAACTGTTTTCCTTTCCCAATGAGAGAAGATGATG AAGAGGCAGATGCAG ATGGTGCAAATTATCAGC TTGA GATGATGAGGTGC TTGAGGG AGGTTAATG TTG ACAAT AACACTG TTGGAT GGTATCAATCTT GCTTGC ] [+] EMBL AK103713 [ CCCTAGCTCGCCTCCTCCTCCTCCTCCTCGCCGCCGCCGCCGCCGCCGTCGCCGTCGAGCACCACCCGAGCAGCCATGGCGAATCCGGCAGCAGCAGCAGGGCCGTCGGGGGGAGCGAGGTCGTTCCTGCAGGCCGTGTCGACCGTCACCGAGGAGGCGCCGTCGCCGCTCCGCGTCGTGCAGATGGAGGGCCTGGCTGTCCTGAAGATCATTAAGCACTGTGAGGAGTTTGCACCTGCTCTAGTTACAGGCCAACTGCTTGGTTTGGATGTTGGCAGTGTTCTGGAAGTAACGAACTGTTTTCCTTTCCCAATGAGAGAAGATGATG AAGAGGCAGATGCAG ATGGTGCAAATTATCAGC TTGA GATGATGAGGTGC TTGAGGG AGGTTAATG TTG ACAAT AACACTG TTGGAT GGTATCAATCTT GCTTGCTTGGATCTTTTCAGACTGTGGAACTGATTGAAACGTTTATGAACTATCAGGAGAATATCCGGAGATGTGTGTGCATCGTTTATGACCCATCTAGGTCAAATCAGGGGGTTCTAGCTCTCAAGGCCTTGAAACTCACAGATTCATTCATGGATCTTTACCGTAACAATGGTTTAACTGGAGAGAAGTTAAGAGAGAAGAAATTGTCATGGGTTGATATTTTTGAGGAGATACCGATTAAAGTTTCCAACTCTGCACTTGTCAGTGCCTTCATGACGGAGCTGGAACCTGAATCACCTGTTTCACAGTGTGATTTTGACCGCCTTAAATTGTCAACTGCTCCATTCATGGAAAGGAACTTGGAATTTCTGATTGGCTGCATGGATGATCTTTCATCAGAGCAGAACAAGTTCCAATATTACTATCGCAATGTCTCAAGACAGCAGTCACAGCAGCAGGCATGGCTCCAAAAGAGAAGGCAAGAGAATATGGCAAGAAAAGCTGCTGGAGAGGAGCCATTGCCAGAAGAAGACCCATCCAATCCCATTTTCAAGCCGATTCCTGAGCCGTCACGTTTGGAGGGTTATCTTGTAACCAATCAGATCTCCAGTTACTGCAACCATATTAATGGGGTTGCTGGTCAGAATTTCAACAGGCTCTACTTAATGAAGGCCTTGCAGGAGGACTAGATGGCTAGGTGATGAGTGGCAACTGTTATGATATTTGACTTGCTAGATGTCAATTTTGCCTTGTGCTTTATGCCTATTAT ACCTTTTGCCAAGAAAAGCCAGAGCCTATTGTACCAATCTTACGGATACAAAGTCCGCAGTATGATAAATT ] [+] EMBL AU075644 [ GCTCGCCTCCTCCTCCTCCTCCTCGCCGCCGCCGCCGCCGCCGTCGCCGTCGAGCACCACCCGAGCAGCCATGGCGAATCCGGCAGCAGCAGCAGGGCCGTCGGGGGGAGCGAGGTCGTTCCTGCAGGCCGTGTCGACCGTCACCGAGGAGGCGCCGTCGCCGCTCCGCGTCGTGCAGATGGAGGGCCTGGCTGTCCTGAAGATCATTAAGCACTGTGAGGAGTTTGCACCTGCTCTAGTTACAGGCCAACTGCTTGGTTTGGATGTTGGCAGTGTTCTGGAAGTAACGAACTGTTTTCCTTTCCCAATGAGAGAAGATGATG AAGAGGCAGATGCAG ATGGTGCAAATTATCAGC TTGA GATGATGAGG ] [+] EMBL OSR22791A [ GCTCGCCTCCTCCTCCTCCTCCTCGCCGCCGCCGCCGCCGCCGTCGCCGTCGAGCACCACCCGAGCATCCATGGCGAATCCGGCAGCAGCAGCAGGGCCGTCGGGGGGAGCGAGGTCGTTCCTGCAGGCCGTGTCGACCGTCACCGAGGAGGCGCCGTCGCCGCTCCGCGTCGTGCAGATGGAGGGCCTGGCTGTCCTGAAGATCATTAAGCACTGTGAGGAGTTTGCACCTGCTCTAGTTACAGG ] [+] EMBL AU069996 [ TCCTCCTCCTCGCCGCCGCCGCCGCCGCCGTCGCCGTCGAGCACNACCCGAGCAGCCATGGCGAATCCGGCAGCAGCAGCAGGGCCGTCGGGGGGAGCGAGGTCGTTCCTGCAGGCCGTGTCGACCGTCACCGAGGAGGCGCCGTCGCCGCTCCGCGTCGTGCAGATGGAGGGCCTGGCTGTCCTGAAGATCATTAAGCACTGTGAGGAGTTTGCACCTGCTCTAGTTACAGGCCAACTGCTTGGTTTGGATGTTGGCAGTGTTCTGGAAGTAACGAACTGTTTTCCTTTCCCAATGAGAGAAGATGATGAAAGAGGCAGATGCAGAATGGTGCAAATTATCAGCTTTGANAATGATGAAGTGCNTTAAGGGAAGGTTAATGTTTGAACAATAAANACTGTTTGGATGGGTATCAAACTTNGCTT ] [+] EMBL AK061349 [ CCGTGTCGACCGTCACCGAGGAGGCGCCGTCGCCGCTCCGCGTCGTGCAGATGGAGGGCCTGGCTGTCCTGAAGATCATTAAGCACTGTGAGGAGTTTGCACCTGCTCTAGTTACAGGCCAACTGCTTGGTTTGGATGTTGGCAGTGTTCTGGAAGTAACGAACTGTTTTCCTTTCCCAATGAGAGAAGATGATG AAGAGGCAGATGCAG ATGGTGCAAATTATCAGC TTGA GATGATGAGGTGC TTGAGGG AGGTTAATG TTG ACAAT AACACTG TTGGAT GGTATCAATCTT GCTTGCTTGGATCTTTTCAGACTGTGGAACTGATTGAAACGTTTATGAACTATCAGGAGAATATCCGGAGATGTGTGTGCATCGTTTATGACCCATCTAGGTCAAATCAGGGGGTTCTAGCTCTCAAGGCCTTGAAACTCACAGATTCATTCATGGATCTTTACCGTAACAATGGTTTAACTGGAGAGAAGTTAAGAGAGAAGAAATTGTCATGGGTTGATATTTTTGAGGAGATACCGATTAAAGTTTCCAACTCTGCACTTGTCAGTGCCTTCATGACGGAGCTGGAACCTGAATCACCTGTTTCACAGTGTGATTTTGACCGCCTTAAATTGTCAACTGCTCCATTCATGGAAAGGAACTTGGAATTTCTGATTGGCTGCATGGATGATCTTTCATCAGAGCAGAACAAGTTCCAATATTACTATCGCAATGTCTCAAGACAGCAGTCACAGCAGCAGGCATGGCTCCAAAAGAGAAGGCAAGAGAATATGGCAAGAAAAGCTGCTGGAGAGGAGCCATTGCCAGAAGAAGACCCATCCAATCCCATTTTCAAGCCGATTCCTGAGCCGTCACGTTTGGAGGGTTATCTTGTAACCAATCAGATCTCCAGTTACTGCAACCATATTAATGGGGTTGCTGGTCAGAATTTCAACAGGCTCTACTTAATGAAGGCCTTGCAGGAGGACTAGATGGCTAGGTGATGAGTGGCAACTGTTATGATATTTGACTTGCTAGATGTCAATTTTGCCTTGTGCTTTATGCCTATTAT ACCTTTTGCCAAGAAAAGCCAGAGCCTATTGTACCAATCTTACGGATACAAAGTCCGCAGTATGATAAATTGA ] [+] EMBL CB630744 [ AGATGCCG ATGGTGCAAATTATCAGC TTGA GATGATGAGGTGC TTGAGGG AGGTTAATG TTG ACAAT AACACTG TTGGAT GGTATCAATCTT GCTTGCTTGGATCTTTTCAGACTGTGGAACTGATTGAAACGTTTATGAACTATCAGGAGAATATCCGGACATGTGTGTGCATCGTTTATGACCCATCTAGGTCAAACCAGGGGGTTCTAGCTCTCAAGGCCTTGAAACTCACAGATTCATTCATGGATCTTTACCGTAACAATGGTTTAACTGGAGAGAAGTTAAGAGAGAAGAAATTGTCATGGGTTGATATTTTTGAGGAGATACCGATTAAAGTTTCCAACTCTGCACTTGTCAGTGCCTTCATGACGGAGCTGGAACCTGAATCACCTGTTTCACAGTGTGATTTTGACCGCCTTAAATTGTCAACTGCTCCATTCATGGAAAGGAACTTGGAATTTCTGATTGGCTGCATGGATGATCTTTCATCAGAGCAGAACAAGTTCCAATATTACTATCGCAATGTCTCAAGACAGCAGTCACAGCAGCAGGCATGGCTCCAAAAGAGAAGGCAAGAGAATATGGCAAGAAAAGCTGCTGGAGAGGAGCCATTGCCAGAAGAAGACCCATCCAATCCCATTTTCAAGCCGATTCCTGAGCCGTCACGTTTGGAGGGTTATCTTGTAACCAATCAGATCTCCAGTTACTGCAACCATATTAATGGGGTTGCTGGTCAGAATTTCAACAGGCTCTACTTAATGAAGGCCTTGCAGGANGACTAGATG ] [+] EMBL CA998508 [ T GCTTGCTTGGATCTTTTCAGACTGTGGAACTGATTGAAACGTTTATGAACTATCAGGAGAATATCCGGAGATGTGTGTGCATCGTTTATGACCCATCTAGGTCAAATCAGGGGGTTCTAGCTCTCAAGGCCTTGAAACTCACAGATTCATTCATGGATCTTTACCGTAACAATGGTTTAACTGGAGAGAAGTTAAGAGAGAAGAAATTGTCATGGGTTGATATTTTTGAGGAGATACCGATTAAAGTTTCCAACTCTGCACTTGTCAGTGCCTTCATGACGGAGCTGGAACCTGAATCACCTGTTTCACAGTGTGATTTTGACCGCCTTAAATTGTCAACTGCTCCATTCATGGAAAGGAACTTGGAATTTCTGATTGGCTGCATGGATGATCTTTCATCAGAGCAGAACAAGTTCCAATATTAC ] [+] EMBL CA999996 [ AACTATCAGGAGAATATCCGGAGATGTGTGTGCCTTGTTTATGACCCATCTAGGTCAAATCAGGGGGTTCTAGCTCTCAAGGCCTTGAAACTCACAGATTCATTCATGGATCTTTACCGTAACAATGGTTTAACTGGAGAGAAGTTAAGAGAGAAGAAATTGTCATGGGTTGATATTTTTGAGGAGATACCGATTAAAGTTTCCAACTCTGCACTTGTCAGTGCCTTCATGACGGAGCTGGAACCTGAATCACCTGTTTCACAGTGTGATTTTGACCGCCTTAAATTGTCAACTGCTCCATTCATGGAAAGGAACTTGGAATTTCTGATTGGCTGCATGGATGATCTTTCATCAGAGCAGAACAAGTTCCAATATTACTATCGCAATGTCTCAAGACAGCAGTCACAGCAGCAGGCATGGCTCCAAAAGAGAAGGCAAGAGAATATGGCAAGAAAAGCTGCTGGAGAGGAGCCATTGCCAGAAGAAGACCCATCCAATCCCATTTTCAAGCCGATTCCTGAGCCGTCACGTTTGGAGGGTTATCTTGTAACCAATCAGATCTCCAGTTACTGCAACCATATTAATGGGGTTGCTGGTCAGAATTTCAACAGGCTCTACTTAATGAAGGCCTTGCAGGAGGACTAGATGGCTAGGTGATGAGTGGCAACTGTTATGATATTTGACTTGCTAGATGTCAATTTTGCCTTGTGCTTTATGCCTATTAT ACCTTTTGCCAAGAAAAGCCAGAGCCTATTGTACCAATCTTACGGATACAAAGTCCGCAGTATG ] [-] EMBL CB630745 [ GGTTTATCTGGAGAGAAGTTAAGAGAGAAGAAATTGTCATGGGGGGATATTTTTGAGGGGATACCGATTAAAGTTTCCAACTCTGCACTTGTCAGTGCCTTCATGAGGGAGCTGGAACCTGAATCACCTGTTTCACAGTGTGATTTTGACCGCCTTAAATTGTCAACTGCTCCATTCATGGAAAGGAACTTGGAATTTTTGATTGGGTGCATGGATGATTTTTCATCAGAGCAGAACAAGTTCCAATATTTTTATCGCAATGTTTCAAGACAGCAGTCTCAGCAGCAGGCATGGGTCCAAAAGAGAAGGCAAGAGAATATGGCAAGAAAAGCTGTTGGAGAGGAGCCATTGCCAGAAGAAGACCCATCCAATCCCATTTTCAAGCCGATTCTTGAGCCGTCACGTTTGGGGGGTTATTTTGTAACCAATCAGATTTCCAGTTTTTGCAACCATATTAATGGGGTTGGTGGTCAGAATTTCAACAGGCTTTATTTAATGAAGGCCTTGCAGGAGGACTAGATGGGTAGGTGATGAGTGGCAACTGTTATGATATTTGACTTGCTAGATGTCAATTTTGCCTTGTGCTTTATGCCTATTAT ACCTTTTGCCAAGAAAAACCAGAGCCTATTGTACCAATTTTTCGGATACAAAGTCCGCAGTATGATAAATTGATTTTATCGC ] [+] EMBL CA757415 [ CCAACTCTGCACTTGTCAGTGCCTTCATGACGGAGCTGGAACCTGAATCACCTGTTTCACAGTGTGATTTTGACCGCCTTAAATTGTCAACTGCTCCATTCATGGAAAGGAACTTGGAATTTCTGATTGGCTGCATGGATGATCTTTCATCAGAGCAGAACAAGTTCCAATATTACTATCGCAATGTCTCAAGACAGCAGTCACAGCAGCAGGCATGGCTCCAAAAGAGAAGGCAAGAGAATATGGCAAGAAAAGCTGCTGGAGAGGAGCCATTGCCAGAAGAAGACCCATCCAATCCCATTTTCAAGCCGATTCCTGAGCCGTCACGTTTGGAGGGTTATCTTGTAACCAATCAGATCTCCAGTTACTGCAACCATATTAATGGGGTTGCTGGTCAGAATTTCAACAGGCTCTACTTAATGAAGGCCTTGCAGGAGGACTAGATGGCTAGGTGATGAGTGGCAACTGTTATGATATTTGACTTGCTAGATGTCAATTNTGCCTTGTGCTTTATGCCTATTATAACCTTTTGC ] [+] EMBL AU075643 [ CACAGTGTGATTTTGNCCGCCTTAAATTGTCAACTGCTCCATTCATGGAAAGGAACTTGGAATTTCTGATTGGCTGCATGGATGATCTTTCATCAGAGCAGAACAAGTTCCAATATTACTATCGCAATGTCTCAAGACAGCAGTCACAGCAGCAGGCATGGCTCCAAAAGAGAAGGCAAGAGAATATGGCAAGAAAAGCTGCTGGAGAGGAGCCATTGCCAGAAGAAGACCCATCCAATCCCATTTTCAAGCCGATTCCTGAGCCGTCACGTTTGGAGGGTTATCTTGTAACCAATCAGATCTCCAGTTACTGCAACCATATTAATGGGGTTGCTGGTCAGAATTTCAACAGGCTCTACTTAATGAAGG CTTGCAGGAGGACTAGATGGCTAGGTGATGAGTGGCAACTGTTATGATATTTGACTTGCTAGATGTCAATTTTGCCTTGTGCTTTATGCCTATTAT ACCTTTTGCCAAGAAAAGCCAGAGCCTATTGTACCAATCTTACGGATACAAAGTCCGCAGTATGATAAATTGATTTTATCGCTTGGTTGGGTCAAAAAAAAAAAAAAAAAAAA] [+] EMBL CA999917 [ GCCTTAAATTGTCAACTGCTCCATTCATGGAAAGGAACTTGGAATTTCTGATTGGCTGCATGGATGATCTTTCATCAGAGCAGAACAAGTTCCAATATTACTATCGCAATGTCTCAAGACAGCAGTCACAGCAGCAGGCATGGCTCCAAAAGAGAAGGCAAGAGAATATGGCAAGAAAAGCTGCTGGAGAGGAGCCATTGCCAGAAGAAGACCCATCCAATCCCATTTTCAAGCCGATTCCTGAGCCGTCACGTTTGGAGGGTTATCTTGTAACCAATCAGATCTCCAGTTACTGCAACC ] [+] EMBL CA999584 [ GCCTTAAATTGTCTACTGCTCCATTCATGGAAAGGAACTTGGAATTTCTGATTGGCTGCATGGATGATCTTTCATCACAGCAGAACAAGTTCCCATATTACTATCGCCATGCCTCCAGACAGCAGTCACAGCAGCAGGCATGGCTCCAAAAGAGAATGCAAGAGAATATGGCAAGAAAAGCTGCTGGAGAG ] [+] EMBL CB000596 [ TTAAATTGTCAACTGCTCCATTCATGGAAAGGATCCCGGAATTTCTGATTGGCTGCATGGATGATCTTTCATCAGAGCAGAACAAGTTCCAATATTACTATCGCAATGTCTCAAGACAGCAGTCACCGCAGCAGGCATGGCTCCAAAAGAGAAGGCAAGAGAATATGGCAAGAAAAGCTGCTGGAGAGGAGCCATTGCCAGAAGAAGACCCATCCAATCCCATTTTCAAGCCGATTCCTGAGCCGTCACGTTTGGAGGGTTATCTTGTAACCAATCAGATCTCCAGTTACTGCAACCATATTAATGGGGTTGCTGGTCAGAATTTCAACAGGCTCTACTTAATGAAGGCCTTGCAGGAGGACTAGATGGCTAGGTGATGAGTGGCAACTGTTATGATATTTGACTTGCTAGATGTCAATTTTGCCTTGTGCTTTATGCCTATTAT ACCTTTTGCCAAGAAAAGCCAGAGCCTATTGTACCAATCTTACGGATACAAAGTCCGCAGTATGATAAATTGATTTTATCG ] [+] EMBL CB660434 [ TCAGAGCAGAACAAGTTCCAATATTACTATCCCAATGTCTCAAGACAGCAGTCACAGCAGCAGGCATGGCTCCAAAAGAGAAGGCAAGAGAATATGGCAAGAAAAGCTGCTGGAGAGGAGCCATTGCCAGAAGAAGACCCATCCAATCCCATTTTCAAGCCGATTCCTGAGCCGTCACGTTTGGAGGGTTATCTTGTAACCAATCAGATCTCCAGTTACTGCAACCATATTAATGGGGTTGCTGGTCAGAATTTCAACAGGCTCTACTTAATGAAGGCCTTGCAGGAGGACTAGATGGCTAGGTGATGAGTGGCAACTGTTATGATATTTGACTTGCTAGATGTCAATTTTGCCTTGTGCTTTATGCCTATTAT ACCTTTTGCCAAGAAAAGCCAGAGCCTATTGTACCAATCTTACGGATACAAAGTCCGCAGTATGATAAATTGATTTTATCGCT ] consensusID : consensus_15208#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence [TGGCATAAGCTGCTGGAGAGTGAGCCATTTGCCAAGAAGAAGACCCATTCCAATCCCATTTTCAAGCCCGATTCCTGAGCCGTCCACGTTTNGGAGGGTTATCTTGTAACCAATCAGATCTCCAGTTACTGCAACCATATTAATGGGGTTGCTGGTCAGAATTTCAACAGGCTCTACTTAATGAAGGCTTGCAGGAGGACTAGATGGCTAGGTGATGAGTGGCAACTGTTATGATATTTGACTTGCTAGATGTCAATTTTGCCTTGTGCTTTATGCCTATTATACCTTTTGCCAAGAAAAGCCAGAGCCTATTGTACCAATCTTACGGATACAAAGTCCGCAGTATGATAAATTGATTTTATCGCTAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU096998 [TGGCATAAGCTGCTGGAGAGTGAGCCATTTGCCAAGAAGAAGACCCATTCCAATCCCATTTTCAAGCCCGATTCCTGAGCCGTCCACGTTTNGGAGGGTTATCTTGTAACCAATCAGATCTCCAGTTACTGCAACCATATTAATGGGGTTGCTGGTCAGAATTTCAACAGGCTCTACTTAATGAAGGCTTGCAGGAGGACTAGATGGCTAGGTGATGAGTGGCAACTGTTATGATATTTGACTTGCTAGATGTCAATTTTGCCTTGTGCTTTATGCCTATTATACCTTTTGCCAAGAAAAGCCAGAGCCTATTGTACCAATCTTACGGATACAAAGTCCGCAGTATGATAAATTGATTTTATCGCTAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_15208#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 330 fasta sequence [GNTCNTGTTTCCGTCGTAAAGCTTCAGATGNNTTTTGNTNTTCATTCCATGGCGCTTATNCACCAGCCNTATTGANANTTGCGTTACNACTGCAGGGTTGCTGGNCAGAATTTCNACAGGCGCTACTTAATNAAGGCCTTNCAGGAGGACTAGATGGCTAGGTNATGAGTGGCAACTGTTATGATATNTGACTTGCTAGATGNCAATTTTGCCNTGTGCTTTATGCCTATTATACCNTTTGCCNANAAAAGCCAGAGCCTATTGTNCCAACCTTACGGATANNAAGTCCNCAGTATGATAAANTGATTTTATCGCTTGGTTGGGTCTNAA] [-] EMBL OSS10781A [GNTCNTGTTTCCGTCGTAAAGCTTCAGATGNNTTTTGNTNTTCATTCCATGGCGCTTATNCACCAGCCNTATTGANANTTGCGTTACNACTGCAGGGTTGCTGGNCAGAATTTCNACAGGCGCTACTTAATNAAGGCCTTNCAGGAGGACTAGATGGCTAGGTNATGAGTGGCAACTGTTATGATATNTGACTTGCTAGATGNCAATTTTGCCNTGTGCTTTATGCCTATTATACCNTTTGCCNANAAAAGCCAGAGCCTATTGTNCCAACCTTACGGATANNAAGTCCNCAGTATGATAAANTGATTTTATCGCTTGGTTGGGTCTNAA] consensusID : consensus_15208#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 307 fasta sequence [GCCGCCGNCGCCGTCGCCGTCGAGCACCACCCGAGCAGNCATGGCGAATCCGGCAGCAGCAGCAGGGCCGTCGGGGGGAGCGAGGTCGTTCCTGCAGGCCGTGTCGACCGTCACCGAGGAGGCGCCGTCGNCGCTCCGNGTCGTGCAGATGGAGGGCCTGGNTGTCCTGAAGATCATTAAGCACTGTGAGGGAGTTTGCACCTGGNTCTAAGTTACAGGGCAACTGGCTTTGGGTTTGNATTGTTTGGCAGTTGTTTCTGTGAAGTTAACGNNACTGNTTTTTCCTTTTCCCAAATGNGGAAGTANG] [+] EMBL OSC20911 [GCCGCCGNCGCCGTCGCCGTCGAGCACCACCCGAGCAGNCATGGCGAATCCGGCAGCAGCAGCAGGGCCGTCGGGGGGAGCGAGGTCGTTCCTGCAGGCCGTGTCGACCGTCACCGAGGAGGCGCCGTCGNCGCTCCGNGTCGTGCAGATGGAGGGCCTGGNTGTCCTGAAGATCATTAAGCACTGTGAGGGAGTTTGCACCTGGNTCTAAGTTACAGGGCAACTGGCTTTGGGTTTGNATTGTTTGGCAGTTGTTTCTGTGAAGTTAACGNNACTGNTTTTTCCTTTTCCCAAATGNGGAAGTANG] consensusID : consensus_15208#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 271 fasta sequence [ATGAAGGCCTTGCAGGAGGACTAGATGGCTAGGTGATGAGTGGCAACTGTTATGATATATGACTTGCTAGATGTCAATTTTGCCTTGTGCTTTATGCCTATTATACCTTTTGCCTAGATAAGCCAGAGCCTATTGTACCAATCTTACGGATACAAAGTCCTTTTTATGATAAATTGATTTTATCGCTTGGTTGGGTCTCTTATGGTGTTTAAATCTTTCAGTTAACTCAAATTGCTNTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF329289 [ATGAAGGCCTTGCAGGAGGACTAGATGGCTAGGTGATGAGTGGCAACTGTTATGATATATGACTTGCTAGATGTCAATTTTGCCTTGTGCTTTATGCCTATTATACCTTTTGCCTAGATAAGCCAGAGCCTATTGTACCAATCTTACGGATACAAAGTCCTTTTTATGATAAATTGATTTTATCGCTTGGTTGGGTCTCTTATGGTGTTTAAATCTTTCAGTTAACTCAAATTGCTNTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15208#2 ------------------------------------------------------------ consensus_15208#4 ------------------------------------------------------------ consensus_15208#1 ------------------------------------------------------------ consensus_15208#0 CTGACCTAAACCCTAGCTCGCCTCCTCCTCCTCCTCCTCGCCGCCGCCGCCGCCGCCGTC 60 consensus_15208#3 ------------------------------------------------------------ consensus_15208#2 ------------------------------------------------------------ consensus_15208#4 ------------------------------------------------------------ consensus_15208#1 ------------------------------------------------------------ consensus_15208#0 GCCGTCGAGCACCACCCGAGCAGCCATGGCGAATCCGGCAGCAGCAGCAGGGCCGTCGGG 120 consensus_15208#3 ------------------------------------------------------------ consensus_15208#2 ------------------------------------------------------------ consensus_15208#4 ------------------------------------------------------------ consensus_15208#1 ------------------------------------------------------------ consensus_15208#0 GGGAGCGAGGTCGTTCCTGCAGGCCGTGTCGACCGTCACCGAGGAGGCGCCGTCGCCGCT 180 consensus_15208#3 ------------------------------------------------------------ consensus_15208#2 ------------------------------------------------------------ consensus_15208#4 ------------------------------------------------------------ consensus_15208#1 ------------------------------------------------------------ consensus_15208#0 CCGCGTCGTGCAGATGGAGGGCCTGGCTGTCCTGAAGATCATTAAGCACTGTGAGGAGTT 240 consensus_15208#3 ------------------------------------------------------------ consensus_15208#2 ------------------------------------------------------------ consensus_15208#4 ------------------------------------------------------------ consensus_15208#1 ------------------------------------------------------------ consensus_15208#0 TGCACCTGCTCTAGTTACAGGCCAACTGCTTGGTTTGGATGTTGGCAGTGTTCTGGAAGT 300 consensus_15208#3 ------------------------------------------------------------ consensus_15208#2 ------------------------------------------------------------ consensus_15208#4 ------------------------------------------------------------ consensus_15208#1 ------------------------------------------------------------ consensus_15208#0 AACGAACTGTTTTCCTTTCCCAATGAGAGAAGATGATGAAGAGGCAGATGCAGATGGTGC 360 consensus_15208#3 ------------------------------------------------------------ consensus_15208#2 ------------------------------------------------------------ consensus_15208#4 ------------------------------------------------------------ consensus_15208#1 ------------------------------------------------------------ consensus_15208#0 AAATTATCAGCTTGAGATGATGAGGTGCTTGAGGGAGGTTAATGTTGACAATAACACTGT 420 consensus_15208#3 ------------------------------------------------------------ consensus_15208#2 ------------------------------------------------------------ consensus_15208#4 ------------------------------------------------------------ consensus_15208#1 ------------------------------------------------------------ consensus_15208#0 TGGATGGTATCAATCTTGCTTGCTTGGATCTTTTCAGACTGTGGAACTGATTGAAACGTT 480 consensus_15208#3 ------------------------------------------------------------ consensus_15208#2 ------------------------------------------------------------ consensus_15208#4 ------------------------------------------------------------ consensus_15208#1 ------------------------------------------------------------ consensus_15208#0 TATGAACTATCAGGAGAATATCCGGAGATGTGTGTGCATCGTTTATGACCCATCTAGGTC 540 consensus_15208#3 ------------------------------------------------------------ consensus_15208#2 ------------------------------------------------------------ consensus_15208#4 ------------------------------------------------------------ consensus_15208#1 ------------------------------------------------------------ consensus_15208#0 AAATCAGGGGGTTCTAGCTCTCAAGGCCTTGAAACTCACAGATTCATTCATGGATCTTTA 600 consensus_15208#3 ------------------------------------------------------------ consensus_15208#2 ------------------------------------------------------------ consensus_15208#4 ------------------------------------------------------------ consensus_15208#1 ------------------------------------------------------------ consensus_15208#0 CCGTAACAATGGTTTAACTGGAGAGAAGTTAAGAGAGAAGAAATTGTCATGGGTTGATAT 660 consensus_15208#3 ------------------------------------------------------------ consensus_15208#2 ------------------------------------------------------------ consensus_15208#4 ------------------------------------------------------------ consensus_15208#1 ------------------------------------------------------------ consensus_15208#0 TTTTGAGGAGATACCGATTAAAGTTTCCAACTCTGCACTTGTCAGTGCCTTCATGACGGA 720 consensus_15208#3 ------------------------------------------------------------ consensus_15208#2 ------------------------------------------------------------ consensus_15208#4 ------------------------------------------------------------ consensus_15208#1 ------------------------------------------------------------ consensus_15208#0 GCTGGAACCTGAATCACCTGTTTCACAGTGTGATTTTGACCGCCTTAAATTGTCAACTGC 780 consensus_15208#3 ------------------------------------------------------------ consensus_15208#2 ------------------------------------------------------------ consensus_15208#4 ------------------------------------------------------------ consensus_15208#1 ------------------------------------------------------------ consensus_15208#0 TCCATTCATGGAAAGGAACTTGGAATTTCTGATTGGCTGCATGGATGATCTTTCATCAGA 840 consensus_15208#3 ------------------------------------------------------------ consensus_15208#2 ------------------------------------------------------------ consensus_15208#4 ------------------------------------------------------------ consensus_15208#1 ------------------------------------------------------------ consensus_15208#0 GCAGAACAAGTTCCAATATTACTATCGCAATGTCTCAAGACAGCAGTCACAGCAGCAGGC 900 consensus_15208#3 ------------------------------------------------------------ consensus_15208#2 ------------------------------------------------------------ consensus_15208#4 ------------------------------------------------------------ consensus_15208#1 -----------------------------TGGCATAAGCTGCTGGAGAGTGAGCCATTTG 31 consensus_15208#0 ATGGCTCCAAAAGAGAAGGCAAGAGAATATGGCAAGAAAAGCTGCTGGAGAGGAGCCATT 960 consensus_15208#3 ------------------------------------------------------------ consensus_15208#2 --------------------GNTCNTGTTTCCGTCGTAAAGCTTCAGATGNNTTTTGNTN 40 consensus_15208#4 ------------------------------------------------------------ consensus_15208#1 CCAAGAAGAAGACCCATTCCAATCCCATTTTCAAGCCCGATTCCTGAGCCGTCCACGTTT 91 consensus_15208#0 GCCAGAAGAAGACCCAT-CCAATCCCATTTTCAA-GCCGATTCCTGAGCCGTCAC--GTT 1016 consensus_15208#3 ------------------------------------------------GCCGCCGNCGCC 12 consensus_15208#2 TTCATTCCATGGCGCTTATNCACCAGCCNTATTGANANTTGCGTTACNACTGCAGGGTTG 100 consensus_15208#4 ------------------------------------------------------------ consensus_15208#1 NGGAGGGTTATCTTGTAACCAATCAGATCTCCAGTTACTGCAACCATATTAATGGGGTTG 151 consensus_15208#0 TGGAGGGTTATCTTGTAACCAATCAGATCTCCAGTTACTGCAACCATATTAATGGGGTTG 1076 consensus_15208#3 GTCGCCGTCGAGCACCACCCGAGCAGNCATG--GCGAATCCGGCAGCAGCAGCAGGGCCG 70 consensus_15208#2 CTGGNCAGAATTTCNACAGGCGC-TACTTAATNAAGGCCTTNCAGGAGGACTAGATGGCT 159 consensus_15208#4 ------------------------------ATGAAGGCCTTGCAGGAGGACTAGATGGCT 30 consensus_15208#1 CTGGTCAGAATTTCAACAGGCTC-TACTTAATGAAGGC-TTGCAGGAGGACTAGATGGCT 209 consensus_15208#0 CTGGTCAGAATTTCAACAGGCTC-TACTTAATGAAGGCCTTGCAGGAGGACTAGATGGCT 1135 consensus_15208#3 TCGGGGGGAGCGAGGTCGTTCCTGCAGGCCGTGTCGACCGTCACCGAGGAGGCGCCGTCG 130 * * * * ***** * * * consensus_15208#2 AGGTNATGAGTGGCAACTGTTATGATATNTGACTTGCTAGATGNCAATTTTGCCNTGTGC 219 consensus_15208#4 AGGTGATGAGTGGCAACTGTTATGATATATGACTTGCTAGATGTCAATTTTGCCTTGTGC 90 consensus_15208#1 AGGTGATGAGTGGCAACTGTTATGATATTTGACTTGCTAGATGTCAATTTTGCCTTGTGC 269 consensus_15208#0 AGGTGATGAGTGGCAACTGTTATGATATTTGACTTGCTAGATGTCAATTTTGCCTTGTGC 1195 consensus_15208#3 NCGCTCCGNGTCGTG-CAGATGGAGGGCCTGGNTGTCCTGAAGATCATTAAGCACTGTGA 189 * * ** * * * * ** * * ** * *** ** **** consensus_15208#2 TTTATGCCTATTATACCNTTTGCCNANAAAAGCCAGAGCCTATTGTNCCAACCTTACGGA 279 consensus_15208#4 TTTATGCCTATTATACCTTTTGCCTAGATAAGCCAGAGCCTATTGTACCAATCTTACGGA 150 consensus_15208#1 TTTATGCCTATTATACCTTTTGCCAAGAAAAGCCAGAGCCTATTGTACCAATCTTACGGA 329 consensus_15208#0 TTTATGCCTATTATACCTTTTGCCAAGAAAAGCCAGAGCCTATTGTACCAATCTTACGGA 1255 consensus_15208#3 GGGAGTTTGCACCTGGNTCTAAGTTACAGGGCAACTGGCTTTGGGTTTGNATTGTTTGGC 249 * * * * * ** * ** * * ** consensus_15208#2 TANNAAGTCCNCAGTAT-GATAAANTGATTTTATCGCTTGGTTGGGTCTNAA-------- 330 consensus_15208#4 TACAAAGTCCTTTTTAT-GATAAATTGATTTTATCGCTTGGTTGGGTCTCTTATGGTGTT 209 consensus_15208#1 TACAAAGTCCGCAGTAT-GATAAATTGATTTTATCGCTAAAAAAAAAAAAAAAAAAAAAA 388 consensus_15208#0 TACAAAGTCCGCAGTAT-GATAAATTGATTTTATCGCTTGGTTGGGTCAAAAAAAAAAAA 1314 consensus_15208#3 AGTTGTTTCTGTGAAGTTAACGNNACTGNTTTTTCCTTTTCCCAAATGNGGAAGTANG-- 307 ** * * *** ** * consensus_15208#2 ------------------------------------------------------------ consensus_15208#4 TAAATCTTTCAGTTAACTCAAATTGCTNTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 269 consensus_15208#1 AAA--------------------------------------------------------- 391 consensus_15208#0 AAAAAAAA---------------------------------------------------- 1322 consensus_15208#3 ------------------------------------------------------------ consensus_15208#2 -- consensus_15208#4 AA 271 consensus_15208#1 -- consensus_15208#0 -- consensus_15208#3 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||