These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15213#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1095 fasta sequence [ATTTCTTCAACCATTCTCCTCCTACTGCTTCCTCTTTCTTCTTCTTCTTCTGCTCTTTCTTCTTCCTTTGGCACTGGAGGCGGCCAGGCTGTCCTCGGCACTGCAGGCGCTGCGGCCGGTTGCACGGCTGCAGGCGAGCTCGCGGTGGGACGGCCAGCTCCGAGCAGTGCAGTGTGCCGACTAGAGTCGCCGAGGTGAGCTGTGGTAAGAGCCGATTTCGGAGACGACACCATATATCAGGTTCTGCTTCCTCCCATTATATTCCATTTTTGATGCGTATCGTGATGCCTATCTTGTCACTTAGAGTGAAACACAAGTAGCAATGGGGGACGGAAATGAGGTCATTGACATTTCATCAGATAGTGACGATGGTGATGCCTATCTTCCGATTTTATCCTTTTTTCGTAGCATTACACCTACTAACAAGTTTGGATTAAACACGAGCAGAACAAGTACAAATTGAGATAAACAAGATTTATCAAAGCGTGCGCCGTTCAACTATTACAACAGGACAATATGGACCTCGTACTTTCTCTGGATTCGACAAGTACTGCTGGTATGGAAATGATGTCACATTAACAAAAAGTATGCATCTTCAAATTGCTCACGTTGCCGCAGTAAATTTGCCGCTGTCAAGAGAACCCTTATGACCAATGCGAAAATGACCTTTGCAGTCCAGTTTAGCGAGCGGTACATAAACAAGTACATTGGGAGTCCAATTGATGATCTGATGGTGTCTATGGCTGGAACAACACAGTCATATCAAATGAGGCTGAAGAGGTCCAAGGACAGTAGGGCAATGCTGACCACTGGATGGAACCAACTGATTGATGCAAAAGCATTCGATGAGGGTGATGTTTGTCTTTTCCATTTCAAGGAGGTTGACGACGTTCTTGTTCTGAAGGTTCATGTTCTCAAGTAGTGTGGTGGATGAAAATCACCATTTTGTCTGGCAATATGTAATGCCATCCAAATTCGTATGATGTAAAGCTAGTTAAGACCTTATTATGTGGTTGACCTTTCCAGTACAATCTTATTATGTGCTAGTTAAGACTTGATTATGTGGGTCAACTATCTGTTAATGGATGCTTGTCA] [+] EMBL CF328886 [ATTTCTTCAACCATTCTCCTCCTACTGCTTCCTCTTTCTTCTTCTTCTTCTGCTCTTTCTTCTTCCTTTGGCACTGGAGGCGGCCAGGCTGTCCTCGGCACTGCAGGCGCTGCGGCCGGTTGCACGGCTGCAGGCGAGCTCGCGGTGGGACGGCCAGCTCCGAGCAGTGCAGTGTGCCGACTAGAGTCGCCGAGGTGAGCTGTGGTAAGAGCCGATTTCGGAGACGACACCATATATCAGGTTCTGCTTCCTCCCATTATATTCCATTTTTGATGCGTATCGTGATGCCTATCTTGTCACTTAGAGTGAAACACAAGTAGCAATGGGGGACGGAAATGAGGTCATTGACATTTCATCAGATAGTGACGATGGTGATGCCTATCTTCCGATTTTATCCTTTTTTCGTAGCATTACACCTACTAACAAGTTTGGATTAAACACGAGCAGAACAAGTACAAATTGAGATAAACAAGATTTATCAAAGCGTGCGCCGTTCAACTATTACAACAGGACAATATGGACCTCGTACTTTCTCTGGATTCGACAAGTACTGCTGGTATGGAAATGATGTCACATTAACAAAAAGTATGCACCTTCAAATTGCTCACGTTGCCGCAGTAAAT ] [+] EMBL CB663510 [ TCCTACTGCTTCCTCTTTCTTCTTCTTCTTCTGCTCTTTCTTCTTCCTTTGGCACTGGAGGCGGCCAGGCTGTCCTCGGCACTGCAGGCGCTGCGGCCGGTTGCTCGGCTGCAGGCGAGCTCGCGGTGGGACGGCCAGCTCCGAGCAGAGCAGTGTGCCGACTACAGTCGCCGAGGTGAGCTGTGGCAACAGCCGATTTCGGAGACGACACCATATATCAGGTTCTGCTTCCTCCCATTATATTCCATTTTTGATGCGTATCGCGATGCCTATCTTGTCACTTACAGTGAAACACAAGTAGCAATGGGGGACGGAAATGAGGTCATTGACATTTCATCATATAGTGACGATGGTGATGCCTATCTTCCGATTTTATCCTTTTTTCCTAGCATTACACCTACTAACAAGTTTGGATTAAACACGAGCAGAACAAGTACAAATTGAGATAAACAATATTTATCAAAGCGTGCGCCGTTCTACTATTACAACAGGACTATATGGACCTCGTACTTTCTCTGGATTCGACAAGTACTGCTGGTATGGAAATGATGTCACATTAACAAAAAGTATGCATCTTCAAATTGCTCACGTTGCCGCAGTAAATTTGCCGCTGTCAAGAGAA ] [+] EMBL CF335738 [ TCTTCTTCTTCTGCTCTTTCTTCTTCCTTTGGCACTGGAGGCGGCCAGGCTGTCCTCGGCACTGCAGGCGCTGCGGCCGGTTGCACGGCTGCAGGCGAGCTCGCGGTGGGACGGCCAGCTCCGAGCAGTGCAGTGTGCCGACTAGAGTCGCCGAGGTGAGCTGTGGTAAGAGCCGATTTCGGAGACGACACCATATATCAGGTTCTGCTTCCTCCCATTATATTCCATTTTTGATGCGTATCGTGATGCCTATCTTGTCACTTAGAGTGAAACACAAGTAGCAATGGGGGACGGAAATGAGGTCATTGACATTTCATCAGATAGTGACGATGGTGATGCCTATCTTCCGATTTTATCCTTTTTTCGTAGCATTACACCTACTAACAAGTTTGGATTAAACACGAGCAGAACAAGTACAAATTGAGATAAACAAGATTTATCAAAGCGTGCGCCGTTCAACTATTACAACAGGACAATATGGACCTCGTACTTTCTCTGGATTCGACAAGTACTGCTGGTATGGAAATGATGTCACATTAACAAAAAGTATGCATCTTCAAATT ] [+] EMBL CF331822 [ TCTTCTTCTTCTGCTCTTTCTTCTTCCTTTGGCACTGGAGGCGGCCAGGCTGTCCTCGGCACTGCAGGCGCTGCGGCCGGTTGCACGGCTGCAGGCGAGCTCGCGGTGGGACGGCCAGCTCCGAGCAGTGCAGTGTGCCGACTAGAGTCGCCGAGGTGAGCTGTGGTAAGAGCCGATTTCGGAGACGACACCATATATCAGGTTCTGCTTCCTCCCATTATATTCCATTTTTGATGCGTATCGTGATGCCTATCTTGTCACTTAGAGTGAAACACAAGTAGCAATGGGGGACGGAAATGAGGTCATTGACATTTCATCAGATAGTGACGATGGTGATGCCTATCTTCCGATTTTATCCTTTTTTCGTAGCATTACACCTACTAACAAGTTTGGATTAAACACGAGCAGAACAAGTACAAATTGAGATAAACAAGATTTATCAAAGCGTGCGCCGTTCAACTATTACAACAGGACAATATGGACCTCGTACTTTCTCTGGATTCGACAAGTACTGCTGGTATGGAAATGATGTCACATTAACAAAAAGTATGCATCTTCAAA ] [-] EMBL CB663511 [ ATGCGTATCGTGATGCCTATCTTGTCACTTAGAGTGAAACACAAGTAGCAATGGGGGACGGAAATGAGGTCATTGACATTTCATCAGATAGTGACGATGGTGATGCCTATCTTCCGATTTTATCCTTTTTTCGTAGCATTACACCTACTAACAAGTTTGGATTAAACACGAGCAGAACAAGTACAAATTGAGATAAACAAGATTTATCAAAGCGTGCGCCGTTCAACTATTACAACAGGACAATATGGACCTCGTACTTTCTCTGGATTCGACAAGTACTGCTGGTATGGAAATGATGTCACATTAACAAAAAGTATGCATCTTCAAATTGCTCACGTTGCCGCAGTAAATTTGCCGCTGTCAAGAGAACCCTTATGACCAATGCGAAAATGACCTTTGCAGTCCAGTTTAGCGAGCGGTACATAAACAAGTACATTGGGAGTCCAATTGATGATCTGATGGTGTCTATGGCTGGAACAACACAGTCATATCAAATGAGGCTGAAGAGGTCCAAGGACAGTAGGGCAATGCTGACCACTGGATGGAACCAACTGATTGATGCAAAAGCATTCGATGAGGGTGATGTTTGTCTTTTCCATTTCAAGGAGGTTGACGACGTTCTTGTTCTGAAGGTTCATGTTCTCAAGTAGTGTGGTGGATGAAAATCACCATTTTGTCTGGCAATATGTAATGCCATCCAAATTCGTATGATGTAAAGCTAGTTAAGACCTTATTATGTGGTTGACCTTTCCAGTACAATCTTATTATGTGCTAGTTAAGACTTGATTATGTGGGTCAACTATCTGTTAATGGATGCTTGTCA] [+] EMBL BE229379 [ CAAAAAGTATGCATCTTCAAATTGCTCACGTTGCCGCAGTAAATTTGCCGCTGTCAAGAGAACCCTTATGACCAATGCGAAAATGACCTTTGCAGTCCAGTTTAGCGAGCGGTACATAAACAAGTACATTGGGAGTCCAATTGATGATCTGATGGTGTCTATGGCTGGAACAACACAGTCATATCAAATGAGGCTGAAGAGGTCCAAGGACAGTAGGGCAATGCTGACCACTGGATGGAACCAACTGATTGATGCAAAAGCATTCGATGAGGGTGATGTTTGTCTTTTCCATTTCAAGGAGGTTGACGACGTTCTTGTTCTGAAGGTTCATGTTCTCAAGTAGTGTGGTGGATGAAAATCACCATTTTGTCTGGCAATATGTAATGCCATCCAAATTCGTATGATGTAAAGCTAGTTAAGMCCTTATTATGTGG TGACC TTCCAGTAC ] consensusID : consensus_15213#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1022 fasta sequence [TGGAAGGTGAGCAGCCAACTCAGTTCGTCCCTTTATTTCTTCAACCATTCTCCTCCTACTGCTTCCTCTTTCTTCTTCTTCTTCTGCTCTTTCTTCTTCCTTTGGCACTGGAGGCGGCCAGGCTGTCCTCGGCACTGCAGGCGCTGCGGCCGGTTGCACGGCTGCAGGCGAGCTCGCGGTGGGACGGCCAGCTCCGAGCAGTGCAGTGTGCCGACTAGAGTCGCCGAGGTGAGCTGTGAGTGAAACACAAGTAGCAATGGGGGACGGAAATGAGGTCATTGACATTTCATCAGATAGTGACGATGGTGATGCCTATCTTCCGATTTTATCCTTTTTTCGTAGCATTACACCTACTAACAAGTTTGGATTAAACACGAGCAGAACAAGTACAAATTGAGATAAACAAGATTTATCAAAGCGTGCGCCGTTCAACTATTACAACAGGACAATATGGACCTCGTACTTTCTCTGGATTCGACAAGTACTGCTGGTATGGAAATGATGTCACATTAACAAAAAGTATGCATCTTCAAATTGCTCACGTTG-CCGCAGTAAATTTG-CCGCTGTCAAGAGAACCCTTATGACCAATGCGAAAATGACCTTTGCAGTCCAGTTTAGCGAGCGGTACATAAACAAGTACATTGGGAGTCCAATTGATGATCTGATGGTGTCTATGGCTGGAACAACACAGTCATATCAAATGAGGCTGAAGAGGTCCAAGGACAGTAGGGCAATGTTGACCACTGGATGGAACCAACTGATTGATGCAAAAGCATTCGATGAGGGTGATGTTTGTCTTTTCCATTTCAAGGAGGTTGACGACGTTCTTGTTTTGAAGGTTCATGTTCTCAAGTAGTGTGGTGGATGAAAATCACCATTTTGTCTGGCAATATGTAGTGCCATCCAAATTCGTATGATGTAAAGCTAGTTAAGCCCTTATTATGTGGTTGACCTTTCCAGTACAATCTTATTATGTGCTAGTTAAGACTTGATTATGTGGGTCAAAAAAAAAAAAAAAAAAA] [+] EMBL CF331286 [TGGAAGGTGAGCAGCCAACTCAGTTCGTCCCTTTATTTCTTCAACCATTCTCCTCCTACTGCTTCCTCTTTCTTCTTCTTCTTCTGCTCTTTCTTCTTCCTTTGGCACTGGAGGCGGCCAGGCTGTCCTCGGCACTGCAGGCGCTGCGGCCGGTTGCACGGCTGCAGGCGAGCTCGCGGTGGGACGGCCAGCTCCGAGCAGTGCAGTGTGCCGACTAGAGTCGCCGAGGTGAGCTGTGAGTGAAACACAAGTAGCAATGGGGGACGGAAATGAGGTCATTGACATTTCATCAGATAGTGACGATGGTGATGCCTATCTTCCGATTTTATCCTTTTTTCGTAGCATTACACCTACTAACAAGTTTGGATTAAACACGAGCAGAACAAGTACAAATTGAGATAAACAAGATTTATCAAAGCGTGCGCCGTTCAACTATTACAACAGGACAATATGGACCTCGTACTTTCTCTGGATTCGACAAGTACTGCTGGTATGGAAATGATGTCACATTAACAAAAAGTATGCATCTTCAAATTGCTCACGTTGCCCGCAGTAAATTTGCCCGCTGTCAAGAGAA ] [+] EMBL CF328939 [ TGAGCAGCCAACTCAGTTCGTCCCCTTATTTCTTCAACCATTCTCCTCCTACTGCTTCCTCTTTCTTCTTCTTCTTCTGCTCTTTCTTCTTCCTTTGGCACTGGAGGCGGCCAGGCTGTCCTCGGCACTGCAGGCGCTGCGGCCGGTTGCACGGCTGCAGGCGAGCTCGCGGTGGGACGGCCAGCTCCGAGCAGTGCAGTGTGCCGACTAGAGTCGCCGAGGTGAGCTGTGGGTGAAACACAAGTAGCAATGGGGGACGGAAATGAGGTCATTGACATTTCATCAGATAGTGACGATGGTGATGCCTATCTTCCGATTTTATCCTTTTTTCGTAGCATTACACCTACTAACAAGTTTGGATTAAACACGAGCAGAACAAGTACAAATTGAGATAAACAAGATTTATCAAAGCGTGCGCCGTTCAACTATTACAACAGGACAATATGGACCTCGTACTTTCTCTGGATTCGACAAGTACTGCTGGTATGGAAATGATGTCACATTAACAAAAAGTATGCATCTTCAAATCGCTCACGTTG CCGCAGTAAATTT ] [+] EMBL CF327021 [ TCTTCTTCTTCTGCTCTTTCTTCTTCCTTTGGCACTGGAGGCGGCCAGGCTGTCCTCGGCACTGCAGGCGCTGCGGCCGGTTGCACGGCTGCAGGCGAGCTCGCGGTGGGACGGCCAGCTCCGAGCAGTGCAGTGTGCCGACTAGAGTCGCCGAGGTGAGCTGTGAGTGAAACACAAGTAGCAATGGGGGACGGAAATGAGGTCATTGACATTTCATCAGATAGTGACGATGGTGATGCCTATCTTCCGATTTTATCCTTTTTTCGTAGCATTACACCTACTAACAAGTTTGGATTAAACACGAGCAGAACAAGTACAAATTGAGATAAACAAGATTTATCAAAGCGTGCGCCGTTCAACTATTACAACAGGACAATATGGACCTCGTACTTTCTCTGGATTCGACAAGTACTGCTGGTATGGAAATGATGTCACATTAACAAAAAGTATGCATCTTCAAATTGCTCACGTTG CCGCAGTAAATTTG CCGCTGTCAAGAGAACCCTTATGACCAATGCGAAAATGACCTTTGCAGTCCAGTTTAGCGAGCGGTACATAAACAAGTACATTGGGAGTCCAATTGATGATCTGATGGTGTCTATGGCTGGAACAACACAGTC ] [-] EMBL CF328940 [ ACGTTG CCGCAGTAAATTTG CCGCTGTCAAGAGAACCCTTATGACCAATGCGAAAATGACCTTTGCAGTCCAGTTTAGCGAGCGGTACATAAACAAGTACATTGGGAGTCCAATTGATGATCTGATGGTGTCTATGGCTGGAACAACACAGTCATATCAAATGAGGCTGAAGAGGTCCAAGGACAGTAGGGCAATGTTGACCACTGGATGGAACCAACTGATTGATGCAAAAGCATTCGATGAGGGTGATGTTTGTCTTTTCCATTTCAAGGAGGTTGACGACGTTCTTGTTTTGAAGGTTCATGTTCTCAAGTAGTGTGGTGGATGAAAATCACCATTTTGTCTGGCAATATGTAGTGCCATCCAAATTCGTATGATGTAAAGCTAGTTAAGCCCTTATTATGTGGTTGACCTTTCCAGTACAATCTTATTATGTGCTAGTTAAGACTTGATTATGTGGGTCAAAAAAAAAAAAAAAAAAA] [-] EMBL CF331823 [ CGTGG CCGCAGTAAATTTG CCGCTGTCAAGAGAACCCTTATGACCAATGTGAAAATGACCTTTGCAGTCCAGTTTAGAGAGCGGTACATAAACAAGTACATTGGGAGTCCAATTGATGATCTGATGGTGTGTATGGGTGGAACAACACAGTCATATCAAATGAGGGTGAAGAGGTCCAAGGACAGTAGGGCAATGTTGACCCCTGGATGGAACCACCTGATTGATGCAAAAGCATTCGATAAGGGTGATGTTTGTCTTTTCCATTTCAAGAAGGTTGACAACGTTCTTGTTTTGAAGGTTCATGTTTTCAAGTAGTGTGGGGGATAAAAATCACCATTTTGTGTGGCAATATGTAATGCCATCCAAATTTGTATAATGTAAAGATAGTTAAGACCCTATTATGTGGTTGACCCTTCCAGTGCAAaaaaaaa ] consensusID : consensus_15213#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 920 fasta sequence [TCTTCTTCTTCTGCTCTTTCTTCTTCCTTTGGCACTGGAGGCGGCCAGGCTGTCCTCGGCACTGCAGGCGCTGCGGCCGGTTGCACGGCTGCAGGCGAGCTCGCGGTGGGACGGCCAGCTCCGAGCAGTGCAGTGTGCCGACTAGAGTCGCCGAGGTGAGCTGTGAGTGAAACACAAGTAGCAATGGGGGACGGAAATGAGGTCATTGACATTTCATCAGATAGTGACGATGAACAAGTACAAATTGAGATAAACAAGATTTATCAAAGCGTGCGCCGTTCAACTATTACAACAGGACAATATGGACCTCGTACTTTCTCTGGATTCGACAAGTACTGCTGGTATGGAAATGATGTCACATTAACAAAAAGTATGCATCTTCAAATTGCTCACGTTGCCGCAGTAAATTTGCCGCTGTCAAGAGAACCCTTATGACCAATGCGAAAATGACCTTTGCAGTCCAGTTTAGCGAGCGGTACATAAACAAGTACATTGGGAGTCCAATTGATGATCTGATGGTGTCTATGGCTGGAACAACA-CAGTCATATCAAATGAGGCTGAAGAGGTCCAAGGACAGTAGGGCAATGCTGACCACTGGATGGAACCAACTGATTGATGCAAAAGCATTCGATGAGGGTGATGTTTGTCTTTTCCATTTCAAGGAGGTTGACGACGTTCTTGTTCTGAAGGTTCATGTTCTCAAGTAGTGTGGTGGATGAAAATCACCATTTTGTCTGGCAATATGTAATGCCATCCAAATTCGTATGATGTAAAGCTAGTTAAGACCTTATTATGTGGTTGACCTTTCCAGTACAATCTTATTATGTGCTAGTTAAGACTTGATTATGTGGGTCAACTATCTGTTAATGGATGCTTGTCAAGATGGAGGAACTAAAAATGTGTTGTTGTGTCAAAAAAAA] [+] EMBL CF277674 [TCTTCTTCTTCTGCTCTTTCTTCTTCCTTTGGCACTGGAGGCGGCCAGGCTGTCCTCGGCACTGCAGGCGCTGCGGCCGGTTGCACGGCTGCAGGCGAGCTCGCGGTGGGACGGCCAGCTCCGAGCAGTGCAGTGTGCCGACTAGAGTCGTCTAGGTGAGCTGTGAGTGAAACACAAGTAGCAATGGGGGACGGTTTTGATGTCATTGACATTTCATCAGATAGTGACGATGAACAAGTACAAATTGAGATAAACAAGATTTATCAAAGCGTGCGCCGTTCAACTATTACAACAGGACAATATGGACCTCGTACTTTCTCTGGATTCGACAAGTACTGCTGGTATGGAAATGATGTCACATTAACAAAAAGTATGCATCTTCAAATTGCTCACGTTGCCGCAGTAAATTTGCCGCTGTCAAGAGAACCCTTATGACCAATGCGAAAATGACCTTTGCAGTCCAGTTTAGCGAGCGGTACATAAACAAGTACATTGGGAGTCCAATTGATGATCTGATGG ] [+] EMBL AK070845 [ CTTCTTCTTCTGCTCTTTCTTCTTCCTTTGGCACTGGAGGCGGCCAGGCTGTCCTCGGCACTGCAGGCGCTGCGGCCGGTTGCACGGCTGCAGGCGAGCTCGCGGTGGGACGGCCAGCTCCGAGCAGTGCAGTGTGCCGACTAGAGTCGCCGAGGTGAGCTGTGAGTGAAACACAAGTAGCAATGGGGGACGGAAATGAGGTCATTGACATTTCATCAGATAGTGACGATGAACAAGTACAAATTGAGATAAACAAGATTTATCAAAGCGTGCGCCGTTCAACTATTACAACAGGACAATATGGACCTCGTACTTTCTCTGGATTCGACAAGTACTGCTGGTATGGAAATGATGTCACATTAACAAAAAGTATGCATCTTCAAATTGCTCACGTTGCCGCAGTAAATTTGCCGCTGTCAAGAGAACCCTTATGACCAATGCGAAAATGACCTTTGCAGTCCAGTTTAGCGAGCGGTACATAAACAAGTACATTGGGAGTCCAATTGATGATCTGATGGTGTCTATGGCTGGAACAACA CAGTCATATCAAATGAGGCTGAAGAGGTCCAAGGACAGTAGGGCAATGCTGACCACTGGATGGAACCAACTGATTGATGCAAAAGCATTCGATGAGGGTGATGTTTGTCTTTTCCATTTCAAGGAGGTTGACGACGTTCTTGTTCTGAAGGTTCATGTTCTCAAGTAGTGTGGTGGATGAAAATCACCATTTTGTCTGGCAATATGTAATGCCATCCAAATTCGTATGATGTAAAGCTAGTTAAGACCTTATTATGTGGTTGACCTTTCCAGTACAATCTTATTATGTGCTAGTTAAGACTTGATTATGTGGGTCAACTATCTGTTAATGGATGCTTGTCAAGATGGA ] [+] EMBL CF328786 [ TTCTTCTGCTCTTTCTTCTTCCTTTGGCACTGGAGGCGGCCAGGCTGTCCTCGGCACTGCAGGCGCTGCGGCCGGTTGCACGGCTGCAGGCGAGCTCGCGGTGGGACGGCCAGCTCCGAGCAGTGCAGTGTGCCGACTAGAGTCGCCGAGGTGAGCTGTGAGTGAAACACAAGTAGCAATGGGGGACGGAAATGAGGTCATTGACATTTCATCAGATAGTGACGATGAACAAGTACAAATTGAGATAAACAAGATTTATCAAAGCGTGCGCCGTTCAACTATTACAACAGGACAATATGGACCTCGTACTTTCTCTGGATTCGACAAGTACTGCTGGTATGGAAATGATGTCACATTAACAAAAAGTATGCATCTTCAAATTGCTCACGTTGCCGCAGTAAATTTGCCGCTGTCAAGAGAACCCTTATGACCAATGCGAAAATGACCTTTGCAGTCCAGTTTAGCGAGCGGTACATAAACAAGTACATTGGGAGTCCAA ] [-] EMBL CF277673 [ GGAAATGAGGTCATTGACATTTCATCAGATAGTGACGATGAACAAGTACAAATTGAGATAAACAAGATTTATCAAAGCGTGCGCCGTTCAACTATTACAACAGGACAATATGGACCTCGTACTTTCTCTGGATTCGACAAGTACTGCTGGTATGGAAATGATGTCACATTAACAAAAAGTATGCATCTTCAAATTGCTCACGTTGCCGCAGTAAATTTGCCGCTGTCAAGAGAACCCTTATGACCAATGCGAAAATGACCTTTGCAGTCCAGTTTAGCGAGCGGTACATAAACAAGTACATTGGGAGTCCAATTGATGATCTGATGGTGTCTATGGCTGGAACAACA CAGTCATATCAAATGAGGCTGAAGAGGTCCAAGGACAGTAGGGCAATGCTGACCACTGGATGGAACCAACTGATTGATGCAAAAGCATTCGATGAGGGTGATGTTTGTCTTTTCCATTTCAAGGAGGTTGACGACGTTCTTGTTCTGAAGGTTCATGTTCTCAAGTAGTGTGGTGGATGAAAATCACCATTTTGTCTGGCAATATGTAATGCCATCCAAATTCGTATGATGTAAAGCTAGTTAAGACCTTATTATGTGGTTGACCTTTCCAaaaaaa ] [-] EMBL CF335739 [ TACTGCTGGTATGGAAATGATGTCACATTAACAAAAAGTATGCATCTTCAAATTGCTCACGTTGCCGCAGTAAATTTGCCGCTGTCAAGAGAACCCTTATGACCAATGCGAAAATGACCTTTGCAGTCCAGTTTAGCGAGCTGTACATAAACAAGTACATTGGGAGTCCAATTGATGATCTGATGGTGTCTATGGCTGGAACAACA CAGTCATATCAAATGAGGCTGAAGAGGTCCAAGGACAGTAGGGCAATGCTGACCACTGGATGGAACCAACTGATTGATGCAAAAGCATTCGATGAGGGTGATGTTTGTCTTTTCCATTTCAAGGAGGTTGACGACGTTCTTGTTCTGAAGGTTCATGTTCTCAAGTAGTGTGGTGGATGAAAATCACCATTTTGTCTGGCAATATGTAATGCCATCCAAATTCGTATGATGTAAAGCTAGTTAAGACCTTATTATGTGGTTGACCTTTCCAGTACAATCTTATTATGTGCTAGTTAAGACTTGATTATGTGGGTCAACTATCTGTTAATGGATGCTTGTCAAGATGGAGGAACTAAAAA ] [-] EMBL CF327022 [ TGCTGGTATGGAAATGATGTCACATTAACAAAAAGTATGCATCTTCAAATTGCTCACGTTGCCGCAGTAAATTTGCCGCTGTCAAGAGAACCCTTATGACCAATGCGAAAATGACCTTTGCAGTCCAGTTTAGCGAGCGGTACATAAACAAGTACATTGGGAGTCCAATTGATGATCTGATGGTGTCTATGGCTGGAACAACACCAGTCATATCAAATGAGGCTGAAGAGGTCCAAGGACAGTAGGGCAATGCTGACCACTGGATGGAACCAACTGATTGATGCAAAAGCATTCGATGAGGGTGATGTTTGTCTTTTTCATTTCAAGGAGGTTGACGACGTTCTTGTTCTGAAGGTTCATGTTCTCAAGTAGTGTGGTGGATGAAAATCACCATTTTGTCTGGCAATATGTAATGCCATCCAAATTCGTATGATGTAAAGCTAGTTAAGACCTTATTATGTGGTTGACCTTTCCAGTACAATCTTATTATGTGCTAGTTAAGACTTGATTATGTGGGTCAACTATCTGTTAATGGATGCTTGTCAAGATGGAGGAACTATCTATGTGTTGTTGTGTCAAAAAAAA] consensusID : consensus_15213#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 860 fasta sequence [TCTTCTTCTTCTGCTCTTTCTTCTTCCTTTGGCACTGGAGGCGGCCAGGCTGTCCTCGGCACTGCAGGCGCTGCGGCCGGTTGCACGGCTGCAGGCGAGCTCGCGGTGGGACGGCCAGCTCCGAGCAGTGCAGTGTGCCGACTAGAGTCGCCGAGGTGAGCTGTGGTAAGAGCCGATTTCGGAGACGACACCATATATCAGCATTACACCTACTAACAAGTTTGGATTAAACACGAGCAGAACAAGTACAAATTGAGATAAACAAGATTTATCAAAGCGTGCGCCGTTCAACTATTACAACAGGACAATATGGACCTCGTACTTTCTCTGGATTCGACAAGTACTGCTGGTATGGAAATGATGTCACATTAACAAAAAGTATGCATCTTCAAATTGCTCACGTTGCCGCAGTAAATTTGCCGCTGTCAAGAGAACCCTTATGACCAATGCGAAGATGACCTTTGCAGTCCAGTTTAGCGAGCGGTACATAAACAAGTACATTGGGAGTCCAATTGATGATCTGATGGTGTCTATGGCTGGAACAACACAGTCATATCAAATGAGGCTGAAGAGGTCCAAGGACAGTAGGGCAATGCTGACCACTGGATGGAACCAACTGATTGATGCAAAAGCATTCGATGAGGGTGATGTTTGTCTTTTCCATTTCAAGGAGGTTGACGACGTTCTTGTTCTGAAGGTTCATGTTATCAAGTAGTGTGGTGGATGAAAATCACCATTTTGTCTGGCAATATGTAATGCCATCCAAATTCGTATGATGTAAAGCTAGTTAAGACCTTATTATGTGGTTGACCTTTCCAGTACAATCTTATTATGTGCTAGTTAAGACTTAAAAAAAAAAA] [+] EMBL CF331212 [TCTTCTTCTTCTGCTCTTTCTTCTTCCTTTGGCACTGGAGGCGGCCAGGCTGTCCTCGGCACTGCAGGCGCTGCGGCCGGTTGCACGGCTGCAGGCGAGCTCGCGGTGGGACGGCCAGCTCCGAGCAGTGCAGTGTGCCGACTAGAGTCGCCGAGGTGAGCTGTGGTAAGAGCCGATTTCGGAGACGACACCATATATCAGCATTACACCTACTAACAAGTTTGGATTAAACACGAGCAGAACAAGTACAAATTGAGATAAACAAGATTTATCAAAGCGTGCGCCGTTCAACTATTACAACAGGACAATATGGACCTCGTACTTTCTCTGGATTCGACAAGTACTGCTGGTATGGAAATGATGTCACATTAACAAAAAGTATGCATCTTCAAATTGCTCACGTTGCCGCAGTAAATTTGCCGCTGTCAAGAGAACCCTTATGACCAATGCGAAGATGACCTTTGCAGTCCAGTTTAGCGAGCGGTACATAAACAAGTACATTGGGAGTCCAATTGATGATCTGATGGTGTCTATGGCTGGAACAACACAGTCATATCAA ] [-] EMBL CF331213 [ GTACTGCTGGTATGGAAATGATGTCACATTAACAAAAAGTATGCATCTTCAAATTGCTCACGTTGCCGCAGTAAATTTGCCGCTGTCAAGAGAACCCTTATGACCAATGCGAAGATGACCTTTGCAGTCCAGTTTAGCGAGCGGTACATAAACAAGTACATTGGGAGTCCAATTGATGATCTGATGGTGTCTATGGCTGGAACAACACAGTCATATCAAATGAGGCTGAAGAGGTCCAAGGACAGTAGGGCAATGCTGACCACTGGATGGAACCAACTGATTGATGCAAAAGCATTCGATGAGGGTGATGTTTGTCTTTTCCATTTCAAGGAGGTTGACGACGTTCTTGTTCTGAAGGTTCATGTTATCAAGTAGTGTGGTGGATGAAAATCACCATTTTGTCTGGCAATATGTAATGCCATCCAAATTCGTATGATGTAAAGCTAGTTAAGACCTTATTATGTGGTTGACCTTTCCAGTACAATCTTATTATGTGCTAGTTAAGACTTAAAAAAAAAAA] [-] EMBL CF328887 [ TACTGCTGGTATGGAAATGATGTCACATTAACAAAAAGTATGCACCTTCAAATTGCTCACGTTGCCGCAGTAAATTTGCCGCTGTCAAGAGAACCCTTATGACCAATGCGAAAATGACCTTTGCAGTCCAGTTTAGCGAGCGGTACATAAACAAGTACATTGGGAGTCCAATTGATGATCTGATGGTGTCTATGGCTGGAACAACACAGTCATATCAAATGAGGCTGAAGAGGTCCAAGGACAGTAGGGCAATGCTGACCACTGGATGGAACCAACTGATTGATGCAAAAGCATTCGATGAGGGTGATGTTTGTCTTTTCCATTTCAAGGAGGTTGACGACGTTCTTGTTCTGAAGGTTCATGTTCTCAAGTAGTGTGGTGGATGAAAATCACCATTTTGTCTGGCAATATGTAATGCCATCCAAATTCGTATGATGTAAAGCTAGTTAAGACCTTATTATGTGGTTGACCTTTCCAGTACAATCTTATTATGTGCTAGTTAAGACTTAAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15213#1 TGGAAGGTGAGCAGCCAACTCAGTTCGTCCCTTTATTTCTTCAACCATTCTCCTCCTACT 60 consensus_15213#3 ------------------------------------------------------------ consensus_15213#0 ----------------------------------ATTTCTTCAACCATTCTCCTCCTACT 26 consensus_15213#2 ------------------------------------------------------------ consensus_15213#1 GCTTCCTCTTTCTTCTTCTTCTTCTGCTCTTTCTTCTTCCTTTGGCACTGGAGGCGGCCA 120 consensus_15213#3 -------------TCTTCTTCTTCTGCTCTTTCTTCTTCCTTTGGCACTGGAGGCGGCCA 47 consensus_15213#0 GCTTCCTCTTTCTTCTTCTTCTTCTGCTCTTTCTTCTTCCTTTGGCACTGGAGGCGGCCA 86 consensus_15213#2 -------------TCTTCTTCTTCTGCTCTTTCTTCTTCCTTTGGCACTGGAGGCGGCCA 47 *********************************************** consensus_15213#1 GGCTGTCCTCGGCACTGCAGGCGCTGCGGCCGGTTGCACGGCTGCAGGCGAGCTCGCGGT 180 consensus_15213#3 GGCTGTCCTCGGCACTGCAGGCGCTGCGGCCGGTTGCACGGCTGCAGGCGAGCTCGCGGT 107 consensus_15213#0 GGCTGTCCTCGGCACTGCAGGCGCTGCGGCCGGTTGCACGGCTGCAGGCGAGCTCGCGGT 146 consensus_15213#2 GGCTGTCCTCGGCACTGCAGGCGCTGCGGCCGGTTGCACGGCTGCAGGCGAGCTCGCGGT 107 ************************************************************ consensus_15213#1 GGGACGGCCAGCTCCGAGCAGTGCAGTGTGCCGACTAGAGTCGCCGAGGTGAGCTGTGA- 239 consensus_15213#3 GGGACGGCCAGCTCCGAGCAGTGCAGTGTGCCGACTAGAGTCGCCGAGGTGAGCTGTG-- 165 consensus_15213#0 GGGACGGCCAGCTCCGAGCAGTGCAGTGTGCCGACTAGAGTCGCCGAGGTGAGCTGTGGT 206 consensus_15213#2 GGGACGGCCAGCTCCGAGCAGTGCAGTGTGCCGACTAGAGTCGCCGAGGTGAGCTGTGA- 166 ********************************************************** consensus_15213#1 ------------------------------------------------------------ consensus_15213#3 ------------------------------------------------------------ consensus_15213#0 AAGAGCCGATTTCGGAGACGACACCATATATCAGGTTCTGCTTCCTCCCATTATATTCCA 266 consensus_15213#2 ------------------------------------------------------------ consensus_15213#1 ---------------------------------------GTGAAACACAAGTAGCAATGG 260 consensus_15213#3 --------------------------------------------------GTAAGAGCCG 175 consensus_15213#0 TTTTTGATGCGTATCGTGATGCCTATCTTGTCACTTAGAGTGAAACACAAGTAGCAATGG 326 consensus_15213#2 ---------------------------------------GTGAAACACAAGTAGCAATGG 187 *** * * consensus_15213#1 GGGACGGAAATGAGGTCATTGACATTTCATCAGATAGTGACGATGGTGATGCCTATCTTC 320 consensus_15213#3 ATTTCGGAGACGACACCAT--ATATC---------------------------------- 199 consensus_15213#0 GGGACGGAAATGAGGTCATTGACATTTCATCAGATAGTGACGATGGTGATGCCTATCTTC 386 consensus_15213#2 GGGACGGAAATGAGGTCATTGACATTT--------------------------------- 214 **** * ** *** * ** consensus_15213#1 CGATTTTATCCTTTTTTCGTAGCATTACACCTACTAACAAGTTTGGATTAAACACGAGCA 380 consensus_15213#3 --------------------AGCATTACACCTACTAACAAGTTTGGATTAAACACGAGCA 239 consensus_15213#0 CGATTTTATCCTTTTTTCGTAGCATTACACCTACTAACAAGTTTGGATTAAACACGAGCA 446 consensus_15213#2 -----------------------------------------CATCAGATAGTGACGA--T 231 * ** **** consensus_15213#1 GAACAAGTACAAATTGAGATAAACAAGATTTATCAAAGCGTGCGCCGTTCAACTATTACA 440 consensus_15213#3 GAACAAGTACAAATTGAGATAAACAAGATTTATCAAAGCGTGCGCCGTTCAACTATTACA 299 consensus_15213#0 GAACAAGTACAAATTGAGATAAACAAGATTTATCAAAGCGTGCGCCGTTCAACTATTACA 506 consensus_15213#2 GAACAAGTACAAATTGAGATAAACAAGATTTATCAAAGCGTGCGCCGTTCAACTATTACA 291 ************************************************************ consensus_15213#1 ACAGGACAATATGGACCTCGTACTTTCTCTGGATTCGACAAGTACTGCTGGTATGGAAAT 500 consensus_15213#3 ACAGGACAATATGGACCTCGTACTTTCTCTGGATTCGACAAGTACTGCTGGTATGGAAAT 359 consensus_15213#0 ACAGGACAATATGGACCTCGTACTTTCTCTGGATTCGACAAGTACTGCTGGTATGGAAAT 566 consensus_15213#2 ACAGGACAATATGGACCTCGTACTTTCTCTGGATTCGACAAGTACTGCTGGTATGGAAAT 351 ************************************************************ consensus_15213#1 GATGTCACATTAACAAAAAGTATGCATCTTCAAATTGCTCACGTTGCCGCAGTAAATTTG 560 consensus_15213#3 GATGTCACATTAACAAAAAGTATGCATCTTCAAATTGCTCACGTTGCCGCAGTAAATTTG 419 consensus_15213#0 GATGTCACATTAACAAAAAGTATGCATCTTCAAATTGCTCACGTTGCCGCAGTAAATTTG 626 consensus_15213#2 GATGTCACATTAACAAAAAGTATGCATCTTCAAATTGCTCACGTTGCCGCAGTAAATTTG 411 ************************************************************ consensus_15213#1 CCGCTGTCAAGAGAACCCTTATGACCAATGCGAAAATGACCTTTGCAGTCCAGTTTAGCG 620 consensus_15213#3 CCGCTGTCAAGAGAACCCTTATGACCAATGCGAAGATGACCTTTGCAGTCCAGTTTAGCG 479 consensus_15213#0 CCGCTGTCAAGAGAACCCTTATGACCAATGCGAAAATGACCTTTGCAGTCCAGTTTAGCG 686 consensus_15213#2 CCGCTGTCAAGAGAACCCTTATGACCAATGCGAAAATGACCTTTGCAGTCCAGTTTAGCG 471 ********************************** ************************* consensus_15213#1 AGCGGTACATAAACAAGTACATTGGGAGTCCAATTGATGATCTGATGGTGTCTATGGCTG 680 consensus_15213#3 AGCGGTACATAAACAAGTACATTGGGAGTCCAATTGATGATCTGATGGTGTCTATGGCTG 539 consensus_15213#0 AGCGGTACATAAACAAGTACATTGGGAGTCCAATTGATGATCTGATGGTGTCTATGGCTG 746 consensus_15213#2 AGCGGTACATAAACAAGTACATTGGGAGTCCAATTGATGATCTGATGGTGTCTATGGCTG 531 ************************************************************ consensus_15213#1 GAACAACACAGTCATATCAAATGAGGCTGAAGAGGTCCAAGGACAGTAGGGCAATGTTGA 740 consensus_15213#3 GAACAACACAGTCATATCAAATGAGGCTGAAGAGGTCCAAGGACAGTAGGGCAATGCTGA 599 consensus_15213#0 GAACAACACAGTCATATCAAATGAGGCTGAAGAGGTCCAAGGACAGTAGGGCAATGCTGA 806 consensus_15213#2 GAACAACACAGTCATATCAAATGAGGCTGAAGAGGTCCAAGGACAGTAGGGCAATGCTGA 591 ******************************************************** *** consensus_15213#1 CCACTGGATGGAACCAACTGATTGATGCAAAAGCATTCGATGAGGGTGATGTTTGTCTTT 800 consensus_15213#3 CCACTGGATGGAACCAACTGATTGATGCAAAAGCATTCGATGAGGGTGATGTTTGTCTTT 659 consensus_15213#0 CCACTGGATGGAACCAACTGATTGATGCAAAAGCATTCGATGAGGGTGATGTTTGTCTTT 866 consensus_15213#2 CCACTGGATGGAACCAACTGATTGATGCAAAAGCATTCGATGAGGGTGATGTTTGTCTTT 651 ************************************************************ consensus_15213#1 TCCATTTCAAGGAGGTTGACGACGTTCTTGTTTTGAAGGTTCATGTTCTCAAGTAGTGTG 860 consensus_15213#3 TCCATTTCAAGGAGGTTGACGACGTTCTTGTTCTGAAGGTTCATGTTATCAAGTAGTGTG 719 consensus_15213#0 TCCATTTCAAGGAGGTTGACGACGTTCTTGTTCTGAAGGTTCATGTTCTCAAGTAGTGTG 926 consensus_15213#2 TCCATTTCAAGGAGGTTGACGACGTTCTTGTTCTGAAGGTTCATGTTCTCAAGTAGTGTG 711 ******************************** ************** ************ consensus_15213#1 GTGGATGAAAATCACCATTTTGTCTGGCAATATGTAGTGCCATCCAAATTCGTATGATGT 920 consensus_15213#3 GTGGATGAAAATCACCATTTTGTCTGGCAATATGTAATGCCATCCAAATTCGTATGATGT 779 consensus_15213#0 GTGGATGAAAATCACCATTTTGTCTGGCAATATGTAATGCCATCCAAATTCGTATGATGT 986 consensus_15213#2 GTGGATGAAAATCACCATTTTGTCTGGCAATATGTAATGCCATCCAAATTCGTATGATGT 771 ************************************ *********************** consensus_15213#1 AAAGCTAGTTAAGCCCTTATTATGTGGTTGACCTTTCCAGTACAATCTTATTATGTGCTA 980 consensus_15213#3 AAAGCTAGTTAAGACCTTATTATGTGGTTGACCTTTCCAGTACAATCTTATTATGTGCTA 839 consensus_15213#0 AAAGCTAGTTAAGACCTTATTATGTGGTTGACCTTTCCAGTACAATCTTATTATGTGCTA 1046 consensus_15213#2 AAAGCTAGTTAAGACCTTATTATGTGGTTGACCTTTCCAGTACAATCTTATTATGTGCTA 831 ************* ********************************************** consensus_15213#1 GTTAAGACTTGATTATGTGGGTCAAAAAAAAAAAAAAAAAAA------------------ 1022 consensus_15213#3 GTTAAGACTTAA-----------AAAAAAAAA---------------------------- 860 consensus_15213#0 GTTAAGACTTGATTATGTGGGTCAACTATCTGTTAATGGATGCTTGTCA----------- 1095 consensus_15213#2 GTTAAGACTTGATTATGTGGGTCAACTATCTGTTAATGGATGCTTGTCAAGATGGAGGAA 891 ********** * ** * consensus_15213#1 ----------------------------- consensus_15213#3 ----------------------------- consensus_15213#0 ----------------------------- consensus_15213#2 CTAAAAATGTGTTGTTGTGTCAAAAAAAA 920 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||