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Oryza sativa
cluster # 15216 cluster # 15216       Sequences # 20       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_15216#0 length = 766 sequences # 18  
consensus_15216#1 length = 527 sequences # 1  
consensus_15216#2 length = 442 sequences # 1  

consensusID : consensus_15216#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 18
consensus length = 766
fasta sequence
                              [CCCATCTCATCTCTCGCTCGCTCGCTCGCTCGCCGCTACGCCTCACGATTCCGACGACTCCGACGCCGGTAGGGTCATAACACCC-TCCTAGACGCCGGCG-ACGACGAGGGT-GGTTGGGTTGTGGATAGCGGC-TGCGACGACGAGGGCGCTCTCCTGACCG-CCGGCGTGGGGTG-CCCCAGCTCCACCACCGGCGACGACTCCTCCTCCGCCGCGAGCGCTCCCCCAGCCTGCTTCTTTTGCGGGGGTAGCCGGGGCTCCGGCCTCGGCGGCTTTCAAAGCCCCCTTCCTCACAAC-AGGATCCAAAATCCCGTCCTAGAGTTCTTCTACCTCCCCTTCCAAAACTTCCTCTTTTGGCATCCTTGATTCAATTTCCCTTCCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCGATTTCTTCTTCTTGCTTTAGATTTCTTATCCTTCTTCTTGTTGCTAATCTCGATCGATCCATCTATCCATCCAAACAACCTCATTCTTTTTTCCTTTGATTTGATTCTTCGCTGCTAACGCCACCGAAACAGACAACAGATTTACAGCAAAAGAAAAAAAAAGAAGGAAGGCTAACCTTTTTCTGTGGATTTTAGCGTTCTCCGGTTTGTGACGAGATGCCTGCGCTCGCCGTGGACGCCGCTGCACCTGTCGCGCACGCCTTCGCGTGCG-ACGCGGCGCGC-TTCC-CCGCGCCGCTGCTGGGCC-CCGCCGCCGCGGCTGCGGCGGTGGCGGAGAAGCCGACCGCCGCAGCTATTCCTT]

[+] EMBL AK062712             [CCCATCTCATCTCTCGCTCGCTCGCTCGCTCGCCGCTACGCCTCACGATTCCGACGACTCCGACGCCGGTAGGGTCATAACACCC TCCTAGACGCCGGCG ACGACGAGGGT GGTTGGGTTGTGGATAGCGGC TGCGACGACGAGGGCGCTCTCCTGACCG CCGGCGTGGGGTG CCCCAGCTCCACCACCGGCGACGACTCCTCCTCCGCCGCGAGCGCTCCCCCAGCCTGCTTCTTTTGCGGGGGTAGCCGGGGCTCCGGCCTCGGCGGCTTTCAAAGCCCCCTTCCTCACAAC AGGATCCAAAATCCCGTCCTAGAGTTCTTCTACCTCCCCTTCCAAAACTTCCTCTTTTGGCATCCTTGATTCAATTTCCCTTCCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCGATTTCTTCTTCTTGCTTTAGATTTCTTATCCTTCTTCTTGTTGCTAATCTCGATCGATCCATCTATCCATCCAAACAACCTCATTCTTTTTTCCTTTGATTTGATTCTTCGCTGCTAACGCCACCGAAACAGACAACAGATTT                                                                                                                                                                                                                           ]
[+] EMBL OS0402A              [              CGCTCGCTCGCTCGCTCGCCGCTACGCCTCACGATTCCGACGACTCCGACGCCGGTAGGGTCATAACACCC TCCTAGACGCCGGCG ACGACGAGGGT GGTTGGGTTGTGGATAGCGGC TGCGACGACGAGGGCGCTCTCCTGACCG CCGGCGTGGGGTG CCCCAGCTCCACCACCGGCGACGACTCCTCCTCCGCCGCGAGCGCTCCCCCAGCCTGCTTCTTTTGCGGGGGTAGCCGGGGCTCCGGCCTCGGCGGCTTTCAAAGCCCCCTTCCTCACAAC AGGATCCAAAATCCCGTCCTAGAGTTCTTCTACCTCCCCTTCCAAAACTTCCTCTTTTGGCATCCTTGATTCAATTTCCCTTCCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCGATTTCTTCTTCTTGCTTTAGATTTCTTATCCTTCTTCTTGTTGCTAATCTCGATCGATCCATCTATCCATCCAAACAACCTCATTCTTTTTTCCTTTGATTTGATTCTTCGCTGCTAACGCCACCGAAACAGACAACAGATTTACAGCAAAAGAAAAAAAAAGAAGGAAGGCTAACCTTTTTCTGTGGATTTTAGCGTTCTCCGGTTTGTGACGAGATGCCTGCGCTCGCCGTGGACGCCGCTGCACCTGTNGCGCACGCCTTCGCGTGGA ANGCGGCGGGCTTTNC CCGgg                                                                    ]
[+] EMBL AU078197             [              CGCTCGCTCGCTCGCTCGCCGCTACGCCTCACGATTCCGACGACTCCGACGCCGGTAGGGTCATAACACCC TCCTAGACGCCGGCG ACGACGAGGGT GGTTGGGTTGTGGATAGCGGC TGCGACGACGAGGGCGCTCTCCTGACCG CCGGCGTGGGGTG CCCCAGCTCCACCACCGGCGACGACTCCTCCTCCGCCGCGAGCGCTCCCCCAGCCTGCTTCTTTTGCGGGGGTAGCCGGGGCTCCGGCCTCGGCGGCTTTCAAAGCCCCCTTCCTCACAAC AGGATCCAAAATCCCGTCCTAGAGTTCTTCTACCTCCCCTTCCAAAACTTCCTCTTTTGGCATCCTTGATTCAATTTCCCTTCCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCGATTTCTTCTTCTTGCTTTAGATTTCTTATCCTTCTTCTTGTTGCTAATCTCGATCGATCCATCTATCCATCCAAACAACCTCATTCTTTTTTCCTTTGATTTGATTCTTCGCTGCTAACGCCACCGAAAC                                                                                                                                                                                                                                        ]
[+] EMBL AU064184             [              CGCTCGCTCGCTCGCTCGCCGCTACGCCTCACGATTCCGACGACTCCGACGCCGGTAGGGTCATAACACCC TCCTAGACGCCGGCG ACGACGAGGGT GGTTGGGTTGTGGATAGCGGC TGCGACGACGAGGGCGCTCTCCTGACCG CCGGCGTGGGGTG CCCCAGCTCCACCACCGGCGACGACTCCTCCTCCGCCGCGAGCGCTCCCCCAGCCTGCTTCTTTTGCGGGGGTAGCCGGGGCTCCGGCCTCGGCGGCTTTCAAAGCCCCCTTCCTCACAAC AGGATCCAAAATNCCGTCCTAGAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL AU078195             [               GCTCGCTCGCTCGCTCGCCGCTACGCCTCACGATTCCGACGACTCCGACGCCGGTAGGGTCATAACACCC TCCTAGACGCCGGCG ACGACGAGGGT GGTTGGGTTGTGGATAGCGGC TGCGACGACGAGGGCGCTCTCCTGACCG CCGGCGTGGGGTG CCCCAGCTCCACCACCGGCGACGACTCCTCCTCCGCCGCGAGCGCTCCCCCAGCCTGCTTCTTTTGCGGGGGTAGCCGGGGCTCCGGCCTCGGCGGCTTTCAAAGCCCCCTTCCTCACAAC AGGATCCAAAATCCCGTCCTAGAGTTCTTCTACCTCCCCTTCCAAAACTTCCTCTTTTGGCATCCTTGATTCAATTTCCCTTCCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCGATTTCTTCTTCTTGCTTTAGATTTCTTATCCTTCTTCTTGTTGCTAATCTCGATCGATCCATCTATCCATCCAAACAACCTCATTCTTTTTTCCTTTGATTTGATTCTTCGCTGCTAACGCCACCGAAACAGACAACAGATTTACAGCAAAAAAA                                                                                                                                                                                                               ]
[+] EMBL OSC22701             [                CTCGCTCGCTCGCTCGCCGCTACGCCTCACGATTCCGACGACTCCGACGCCGGTAGGGTCATAACACCC TCCTAGACGCCGGCG ACGACGAGGGT GGTTGGGTTGTGGATAGCGGC TGCNACGACGAGGGCGCTCTCCTGACCN CCGGCGTGGGGTG CCCCAGCTCCACCACCGGNGACGACTCCTCCTCCGCNGCGAGCNCTCCCNCAGCNTGCTTCTTTTNCNGGGGTAGCCGGGGCTCCGGCCTCGGCGGCTTTCAAAGCCCCCTTCCTCACAAC ANGATCCAAAATACCNTCCTAGAGTTCTTCTACCTCCCCTTCCAAAACTTCCTCTTTTGGCATCCTTGATTCAATT                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL C29142               [        tcttncgtnTCGCTCGCTCGCTCGCCGCTACGCCTCACGATNATAACGACTCCNACGCCGGTAGGGTCATAACACCC TCCTAGACGCCGGCN ACGACGAGGGT GGTTGGGTTGTGGATAGCGGC TGCAACGACGAGGGCGCTCTCCTGACCG CCGGCGTGGGGTG CCCCAGCTCCACCACCGGCGACGACTCCTCCTCCGACGCGAGCGCTCCCCCAGCCTGCTTCTTTTGCGGGGGTAGNCGGGGCTCCGGCCTCGGCGGCTTTCAAAG CCCCTTCCTCACAAC A                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL C96968               [                  CGCTCGCTCGCTCGCCGCTACGCCTCACGATTCCGACGACNCCGACGCCGGTAGGGTCATAACACCC TCCTAGACGCCGGCG ACGACGAGGGT GGTTGGGTTGTGGATAGCGGC TGCGACGACGAGGGCGCTCTCCTGACCG CCGGCGTGGGGTN CCCCAGCTCCACCACCGGCGACGACNCCTCCTCCGCCGCGAGCGCNCCCCCAGCCTGCTTCTTTTGCGGGGGTAGCCGGGGCTCCGGCCTCGGCGGCTTTCAAAGCCCCCTTCCTCACAAC AGGATCCAAAATCCCGTCCTAGAGTTCTTCTACCTCCCCTTCCAAAACTTCCTCTT                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AU182149             [                    CTCGCTCGCTCGCCGCTACGCCTCACGATTCCGACGACTCCGACGCCGGTAGGGTCATAACACCC TCCTAGACGCCGGCG ACGACGAGGGT GGTTGGGTTGTGGATAGCGGC TGCGACGACGAGGGCGCTCTCCTGACCG CCGGCGTGGGGTG CCCCAGCTCCACCACCGGCGACGACTCCTCCTCCGCCGCGAGCGCTCCCCCAGCCTGCTTCTTTTGCGGGGGTAGCCGGGGCTCCGGCCTCGGCGGCTTTCAAAGCCCCCTTCCTCACAAC AGGATCCAAAATCCCGTCCTAGAGTTCTTCTACCTCCCCTTCCAAAACTTCCTCTTTTGGCATCCTTGATTCAATTTCCCTTCCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCGATTTCTTCTTCTTGCTTTAGATTTCTTATCCTTCT                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL C73860               [                                                            CGACGCCGGTAGGGTCATAACACCC TCCTAGACGCCGGCG ACGACGAGGGT GGTTGGGTTGTGGATAGCGGC TGCGACGACGAGGGCGCTCTCCTGACCG CCGGCGTGGGGTG CCCCAGCTCCACCACCGGCGACGACTCCTCCTCCGCCGCGAGCGCTCCCCCAGCCTGCTTCTTTTGCGGGGGTAGCCGGGGCTCCGGCCTCGGCGGCTTTCAAAGCCCCCTTCCTCACAACAAGGNTCCAAAAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL AU078186             [                                                                        GGTCATAACACCCTTCNTAGACGCCGGCGAACGACGAGGGTGGGTTGGGTTGTGGATAGCGGCTTGCGACGACGAGGGCGCTCTCNTGACCGCCCGGCGTGGGGTG CCCCAGCTCCACCACCGGCGACGACTCCTCCTCCGCCGCGAGCGCTCCNNCAGCCTGCTTCTTTTGCGGGGGTAGCCGGGGCTCCGGCCTCGGCGGCTTTCAAAGCCCCNTTCCTCACAAC AGGATCCAAAATCCCGTCCTAGAGTTCTTCTACCTCCCCTTCCAAAACTTCCTCTTTTGGNATCCTTGATTCAATTTCCCTTCCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCGATTTCTTCTTCTTGCTTTAGATTTCTTATCCTTCTTCTTGTTGCTAATCTCGATCGATCCATCTATCNATCCAAACAACCTCATTCTTTTTTCCTTTGATTTGATTCTTCGCTG TAACGCCACCGAAACAGACAACAGATTTACAGCAAAAGAAAAAAAAAGAAGGAAGGCTAACCTTTTTCTGTGGATTTTAGCGTTCTCCGGTTTGTGACGAGATGCCTGCGCTCGCCGTGGACGCCGCTGCACCTGTC NNNACGCCTTCGCGTGCGNAC CGGCGCGC TTCCNCCGCGCCGCTGCTGGGCCTCCGNCGCCGCGGCTGCGGCGGTGGCGGA                          ]
[+] EMBL C99051               [                                                                                                                             GGATAGCGGC TGCGACGACGAGGGCGCTCTCCTGACCG CCGGCGTGGGGTG CCCCAGCTCCACCACCGGCGACGACTCCTCCTCCGCCGCGAGCGCTCCCCCAGCCTGCTTCTTTTGCGGGGGTAGCCGGGGCTCCGGCCTCGGCGGCTTTCAAAGCCCCCTTCCTCACAAC AGGATCCAAAATCCCGTCCTAGAGTTCTTCTACCTCCCCTTCCAAAACTTCCTCTTTTGGCATCCTTGATTCAATTTCCCTTCCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCGATTTCTTCTTCTTGCTTTAGATTTCTTATCCTTCTTCTTGTTGCTAATCTCGATCGATCCATCTATCCATCCAAACAACCTCATTCTTTTTTCCTTTGATTTGATTCTTCGCT NTAACGCCACCGAAACAGACAACAGATTTACAGCAAAAGAAAAAA                                                                                                                                                                                                           ]
[+] EMBL AU078185             [                                                                                                                                                   GGGCGCTCTCCTGACCG CCGGCGTGGGGTGCCCCCAGCTCCACAACCGGCGACGACTCCTCCTCCGCCGCGAGCGCTCCCCCAGCCTGCTTCTTTTGCGGGGGTAGCCGGGGCTCCGGCNTCGGCGGCTTTCAAAGCCCCCTTCNTCACAAC AGGATCCAAAATCCCGTCCTAGAGTTCTTCTACCTCCCCTTCCAAAACTTCCTCTTTTGGCATCCTTGATTCAATTTCCCTTCCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCGATTTCTTCTTCTTGCTTTAGATTTCTTATCCTTCTTCTTGTTGCTAATCTCGATCGATCCATCTATCCATCCAAACAACCTNATTCTTTNTTCCTTTGATTTGATTCTTCGCTG TAACGCCACCGAAACAGACAACAGATTTACAGCAAAAGAAANANAAAGAAGGAAGGCTAACCTTTTTCTGTGGATTTTAGCGTTCTCCGGTTTGTGACGAGATGCCTGCGCTCGCCGTGGACGCCGCTGCACCTGTACNANACGCCTTCGCGTGCGCAC CGGCGCGC TTCC CCGCGCCGCTGCTGGGCCNCCGCCGCCGCGGCTGCGGCGGTGGCGGA                          ]
[+] EMBL C96969               [                                                                                                                                                                                                                                   CCNAGCCTGCTTCTTTTGCGGGGGTAGCCGGGGCTCCGGCCTCGGCGGCTTTCAAAGCCCCCTTCCTNACAAC AGGATCCAAAATCCCGTCCTAGAGTTCTTCTACCTCCCCTTCCAAAACTTCCTCTTTTGGCATCCTTGATTCAATTTCCCTTCCCTTTCTTTCTTTCTTTCTTTCTTNCTTTCGATTTCTTCTTCTTGCTTTAGATTTCTTATCCTTCTTCTTGTTGCTAATCTCGATCGATCCATCTATCCATCCAAACAACCTCATTCTTTTTTCCTTTGATTTGATTCTTCGCT CTAACGCCACCGANACAGNCNACAGATTTACAGC                                                                                                                                                                                                                      ]
[+] EMBL AU078209             [                                                                                                                                                                                                                                                                                           GCCCCCTTCCTCACAAC AGGATCCAAAATCCCGTCCTAGAGTTCTTCTACCTCCCCTTCCAAAACTTCCTCTTTTGGCATCCTTGATTCAATTTCCCTTCCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCGATTTCTTCTTCTTGCTTTAGATTTCTTATCCTTCTTCTTGTTGCTAATCTCGATCGATCCATCTATCCATCCAAACAACCTCATTCTTTTTTCCTTTGATTTGATTCTTCGCTGCTAACGCCACCGAAACAGACAACAGATTTACAGCAAAAGAAAAAAAAAGAAGGAAGGCTAACCTTTTTCTGTGGATTTTAGCGTTCTCCGGTTTGTGACGAGATGCCTGCGCTCGCCGTGGACGCCGCTGCACCTGTCGCGCACGCCTTCGCGTGCG ACGCGGCGCGC TTCC CCGCGCCGCTGCTGGGCC CCGCCGCCGCGGCTGCGGCGGTGGCGGA                          ]
[-] EMBL CB965128             [                                                                                                                                                                                                                                                                                                                      AATCCCGTCCTAGAGTTCTTCTACCTCCCCTTCCAAAACTTCCTCTTTTGGCATCCTTGATTCAATTTCCCTTCC    CTTTCTTTCTTTCTTTCTTTCTTTCGATTTCTTCTTCTTGCTTTAGATTTCTTATCCTTCTTCTTGTTGCTAATCTCGATCGATCCATCTATCCATCCAAACAACCTCATTCTTTTTTCCTTTGATTTGATTCTTCGCTGCTAACGCCACCGAAACAGACAACAGATTTACAGCAAAAGAAAAAAAAA AAGGAAGGCTAACCTTTTTCTGTGGATTTTAGCGTTCTCCGGTTTGTGACGAGATGCCTGCGCTCGCCGTGGACGCCGCTGCACCTGTCGCGCACGCCTTCGCGTGCG ACGCGGCGCGC TTCC CCGCGCCGCTGCTGGGCC CCGCCGCCGCGGCTGCGGCGGTGGCGGAG                         ]
[-] EMBL CB964551             [                                                                                                                                                                                                                                                                                                                      AATCCCGTCCTAGAGTTCTTCTACCTCCCCTTCCGAAACTTCCTCTTTTGGCATCCTTGATTCAATTTCCCTTCC    CTTTCTTTCTTTCTTTCTTTCTTTCGATTTCTTCTTCTTGCTTTAGATTTCTTATCCTTCTTCTTGTTGCTAATCTCGATCGATCCATCTATCCATCCAAACAACCTCATTCTTTTTTCCTTTGATTTGATTCTTCGCTGCTAACGCCACCGAAACAGACAACAGATTTACAGCAAAAGAAAAAAAAA AAGGAAGGCTAACCTTTTTCTGTGGATTTTAGCGTTCTCCGGTTTGTGACGAGATGCCTGCGCTCGCCGTGGACGCCGCTGCACCTGTCGCGCACGCCTTCGCGTGCG ACGCGGCGCGC TTCC CCGCGCCGCTGCTGGGCC CC CC CCGC GCT CGGCGGTGGCGGAGAAGCCGACCGCCGCAGCTATTCCTT]
[+] EMBL AU182150             [                                                                                                                                                                                                                                                                                                                                TAGAGTTNTTNTACCTCCCCTTCCAAAACTTCCTCTTTTGGCATCCTTGATTCAATTTCCCTTCCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCGATTTCTTCTTCTTGCTTTAGATTTCTTATCCTTCTTCTTGTTGCTAATCTCGATCGATCCATCTATCCATCCAAACAACCTCATTCTTTTTTCCTTTGATTTGATTCTTCGCTGCTAACGCCACCGAAACAGACAACAGATTTACAGCAAAAGAAAAAAAAAGAAGGAAGGCTAACCTTTTTCTGTGGATTTTAGCGTTCTCCGGTTTGTGACGAGATGCCTGCGCTCGCCGTGGACGCCGCTGCACCTGTCGCGCACGCCTTCGCGTGCG ACGCGGCGCGC TTCC CCGCGCCGCTGCTGGGCC CCGCCGCCGCGGCTGCGGCGGTGGCGGA                          ]


>consensus_15216#0 CCCATCTCATCTCTCGCTCGCTCGCTCGCTCGCCGCTACGCCTCACGATTCCGACGACTC CGACGCCGGTAGGGTCATAACACCCTCCTAGACGCCGGCGACGACGAGGGTGGTTGGGTT GTGGATAGCGGCTGCGACGACGAGGGCGCTCTCCTGACCGCCGGCGTGGGGTGCCCCAGC TCCACCACCGGCGACGACTCCTCCTCCGCCGCGAGCGCTCCCCCAGCCTGCTTCTTTTGC GGGGGTAGCCGGGGCTCCGGCCTCGGCGGCTTTCAAAGCCCCCTTCCTCACAACAGGATC CAAAATCCCGTCCTAGAGTTCTTCTACCTCCCCTTCCAAAACTTCCTCTTTTGGCATCCT TGATTCAATTTCCCTTCCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCGATTTCTTCTTCT TGCTTTAGATTTCTTATCCTTCTTCTTGTTGCTAATCTCGATCGATCCATCTATCCATCC AAACAACCTCATTCTTTTTTCCTTTGATTTGATTCTTCGCTGCTAACGCCACCGAAACAG ACAACAGATTTACAGCAAAAGAAAAAAAAAGAAGGAAGGCTAACCTTTTTCTGTGGATTT TAGCGTTCTCCGGTTTGTGACGAGATGCCTGCGCTCGCCGTGGACGCCGCTGCACCTGTC GCGCACGCCTTCGCGTGCGACGCGGCGCGCTTCCCCGCGCCGCTGCTGGGCCCCGCCGCC GCGGCTGCGGCGGTGGCGGAGAAGCCGACCGCCGCAGCTATTCCTT



consensusID : consensus_15216#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 527
fasta sequence
                              [AGTCCNAAAATACCCGGTCCTATGAGTTGCTTGTACCTGGCCCCTTGCCAAAACTTGCCTGCTTGTTGGGCATGCCTTGGATTGCAATTTGCCCTGTGCCCTTTGCGTGTGCTGTGTGCTGTTGCTGTGTGCTTTGCGATTTGCTTCTTGCTTGGCTTTAGATTAGATTGTGTTATGCCTTGCTTGTGGGGGGTAATGTGCGTGCGATGCCATGCTATCCATGCCCAAACAACCTGCATTGCTGTGTTTGCCTGTGGTTTGGATGTGCTTGCGCTAGCTAAACGCCACCGAGAACAGACAACANGATTTACAGCAAAAAGAAAAANAAAAAAGGAAGGCTAACCTTTTGTCTGTGGATTTTAGCGTTCTCACGGTTTGTGACGAGATGCCTGCGCGTCGCCGTGGACGCCGCTGCACCTGTCGCGCACGCCTTCGCGTGCGACGCGGCGCGCTTCCCCGCGCCGCTGCTGGGCCCCGCCGCCGCGGCTGCGGCGGTGGCGGAGAAGCCGACGTAGCCGCAGTATTCC]

[-] EMBL BU673179             [AGTCCNAAAATACCCGGTCCTATGAGTTGCTTGTACCTGGCCCCTTGCCAAAACTTGCCTGCTTGTTGGGCATGCCTTGGATTGCAATTTGCCCTGTGCCCTTTGCGTGTGCTGTGTGCTGTTGCTGTGTGCTTTGCGATTTGCTTCTTGCTTGGCTTTAGATTAGATTGTGTTATGCCTTGCTTGTGGGGGGTAATGTGCGTGCGATGCCATGCTATCCATGCCCAAACAACCTGCATTGCTGTGTTTGCCTGTGGTTTGGATGTGCTTGCGCTAGCTAAACGCCACCGAGAACAGACAACANGATTTACAGCAAAAAGAAAAANAAAAAAGGAAGGCTAACCTTTTGTCTGTGGATTTTAGCGTTCTCACGGTTTGTGACGAGATGCCTGCGCGTCGCCGTGGACGCCGCTGCACCTGTCGCGCACGCCTTCGCGTGCGACGCGGCGCGCTTCCCCGCGCCGCTGCTGGGCCCCGCCGCCGCGGCTGCGGCGGTGGCGGAGAAGCCGACGTAGCCGCAGTATTCC]


>consensus_15216#1 AGTCCNAAAATACCCGGTCCTATGAGTTGCTTGTACCTGGCCCCTTGCCAAAACTTGCCT GCTTGTTGGGCATGCCTTGGATTGCAATTTGCCCTGTGCCCTTTGCGTGTGCTGTGTGCT GTTGCTGTGTGCTTTGCGATTTGCTTCTTGCTTGGCTTTAGATTAGATTGTGTTATGCCT TGCTTGTGGGGGGTAATGTGCGTGCGATGCCATGCTATCCATGCCCAAACAACCTGCATT GCTGTGTTTGCCTGTGGTTTGGATGTGCTTGCGCTAGCTAAACGCCACCGAGAACAGACA ACANGATTTACAGCAAAAAGAAAAANAAAAAAGGAAGGCTAACCTTTTGTCTGTGGATTT TAGCGTTCTCACGGTTTGTGACGAGATGCCTGCGCGTCGCCGTGGACGCCGCTGCACCTG TCGCGCACGCCTTCGCGTGCGACGCGGCGCGCTTCCCCGCGCCGCTGCTGGGCCCCGCCG CCGCGGCTGCGGCGGTGGCGGAGAAGCCGACGTAGCCGCAGTATTCC



consensusID : consensus_15216#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 442
fasta sequence
                              [AATCCCGTCCTAGAGTGTCTTCTACCTCCCCGTTCCACAACTTCCTCTTTTGGCATCCTTGAGTCAATTGTCCCTGTCCCTGTCGGTCCTGTCGGTCTTTCTTTCGATTTCGTGTTCTTGCTTTAGATGTCTTATCCGTTCTTCTTGTTGCTAATCTCGATCGATCCAGTCTATCCATCCGGACCACCGTCATTCTTTTTTCCTCTGATTTGATTCTTCGCTGCTAACGCCACCGAAACAGACTACAGATTTACAGCTAAAGGCACGAAGAAAGGAAGGCTAACCTTTTTCTGTGGATTTTAGCGTTCTCCGGTTTGTGACGAGATGCCTGCGCTCGCCGTGGACGCCGCTGCACCTGTCGGCGCACGCCTTCGCGTGCGACGTCGGCGCGCTTCCCCGCGCCGCTGCTGGGCCCACCCGCCACGCTCCGCGGTGCGGAGAA]

[-] EMBL CB966914             [AATCCCGTCCTAGAGTGTCTTCTACCTCCCCGTTCCACAACTTCCTCTTTTGGCATCCTTGAGTCAATTGTCCCTGTCCCTGTCGGTCCTGTCGGTCTTTCTTTCGATTTCGTGTTCTTGCTTTAGATGTCTTATCCGTTCTTCTTGTTGCTAATCTCGATCGATCCAGTCTATCCATCCGGACCACCGTCATTCTTTTTTCCTCTGATTTGATTCTTCGCTGCTAACGCCACCGAAACAGACTACAGATTTACAGCTAAAGGCACGAAGAAAGGAAGGCTAACCTTTTTCTGTGGATTTTAGCGTTCTCCGGTTTGTGACGAGATGCCTGCGCTCGCCGTGGACGCCGCTGCACCTGTCGGCGCACGCCTTCGCGTGCGACGTCGGCGCGCTTCCCCGCGCCGCTGCTGGGCCCACCCGCCACGCTCCGCGGTGCGGAGAA]


>consensus_15216#2 AATCCCGTCCTAGAGTGTCTTCTACCTCCCCGTTCCACAACTTCCTCTTTTGGCATCCTT GAGTCAATTGTCCCTGTCCCTGTCGGTCCTGTCGGTCTTTCTTTCGATTTCGTGTTCTTG CTTTAGATGTCTTATCCGTTCTTCTTGTTGCTAATCTCGATCGATCCAGTCTATCCATCC GGACCACCGTCATTCTTTTTTCCTCTGATTTGATTCTTCGCTGCTAACGCCACCGAAACA GACTACAGATTTACAGCTAAAGGCACGAAGAAAGGAAGGCTAACCTTTTTCTGTGGATTT TAGCGTTCTCCGGTTTGTGACGAGATGCCTGCGCTCGCCGTGGACGCCGCTGCACCTGTC GGCGCACGCCTTCGCGTGCGACGTCGGCGCGCTTCCCCGCGCCGCTGCTGGGCCCACCCG CCACGCTCCGCGGTGCGGAGAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15216#0      CCCATCTCATCTCTCGCTCGCTCGCTCGCTCGCCGCTACGCCTCACGATTCCGACGACTC 60
consensus_15216#2      ------------------------------------------------------------
consensus_15216#1      ------------------------------------------------------------
                                                                                   

consensus_15216#0      CGACGCCGGTAGGGTCATAACACCCTCCTAGACGCCGGCGACGACGAGGGTGGTTGGGTT 120
consensus_15216#2      ------------------------------------------------------------
consensus_15216#1      ------------------------------------------------------------
                                                                                   

consensus_15216#0      GTGGATAGCGGCTGCGACGACGAGGGCGCTCTCCTGACCGCCGGCGTGGGGTGCCCCAGC 180
consensus_15216#2      ------------------------------------------------------------
consensus_15216#1      ------------------------------------------------------------
                                                                                   

consensus_15216#0      TCCACCACCGGCGACGACTCCTCCTCCGCCGCGAGCGCTCCCCCAGCCTGCTTCTTTTGC 240
consensus_15216#2      ------------------------------------------------------------
consensus_15216#1      ------------------------------------------------------------
                                                                                   

consensus_15216#0      GGGGGTAGCCGGGGCTCCGGCCTCGGCGGCTTTCAAAGCCCCCTTCCTCACAACAGGATC 300
consensus_15216#2      ------------------------------------------------------------
consensus_15216#1      -------------------------------------------------------AGTCC 5
                                                                                   

consensus_15216#0      CAAAATCCC--GTCCTA-GAGT-TCTTCTACCT--CCCC-TTCCAAAACTTCCTCTTTTG 353
consensus_15216#2      ---AATCCC--GTCCTA-GAGTGTCTTCTACCT--CCCCGTTCCACAACTTCCTCTTTTG 52
consensus_15216#1      NAAAATACCCGGTCCTATGAGTTGCTTGTACCTGGCCCCTTGCCAAAACTTGCCTGCTTG 65
                          *** **  ****** ****  *** *****  **** * *** ***** *    ***

consensus_15216#0      ----GCAT-CCTTGATT--CAATTTCCCTT---CCCTTTCTTTCT--------TTCTTTC 395
consensus_15216#2      ----GCAT-CCTTGAGT--CAATTGTCCCT---GTCCCTGTCGGT--------C-CTGTC 93
consensus_15216#1      TTGGGCATGCCTTGGATTGCAATTTGCCCTGTGCCCTTTGCGTGTGCTGTGTGCTGTTGC 125
                           **** *****  *  *****  ** *     *  *     *           *  *

consensus_15216#0      TTTCTTTCTTTCGATTT-CTTCTTCTT--GCTTTAGATT------TCTTATCC-TT-CTT 444
consensus_15216#2      GGTCTTTCTTTCGATTT-CGTGTTCTT--GCTTTAGATG------TCTTATCCGTT-CTT 143
consensus_15216#1      TGTGTGCTTTGCGATTTGCTTCTTGCTTGGCTTTAGATTAGATTGTGTTATGCCTTGCTT 185
                         * *   ** ****** * * **  *  *********       * **** * ** ***

consensus_15216#0      CTTGTTGCTAATCT-CGATCGAT-CCA-TCTATCCAT--CCAAACAACC-TCATTCTT-- 496
consensus_15216#2      CTTGTTGCTAATCT-CGATCGAT-CCAGTCTATCCAT--CCGGACCACCGTCATTCTT-- 197
consensus_15216#1      GTGGGGGGTAATGTGCGTGCGATGCCATGCTATCCATGCCCAAACAACCTGCATTGCTGT 245
                        * *  * **** * **  **** ***  ********  **  ** ***  ****  *  

consensus_15216#0      -TTTTCCTTTGATTTGATT----CTTCGCT-GCTAA-CGCCACCGA-AACAGACAACAG- 547
consensus_15216#2      -TTTTCCTCTGATTTGATT----CTTCGCT-GCTAA-CGCCACCGA-AACAGACTACAG- 248
consensus_15216#1      GTTTGCCTGTGGTTTGGATGTGCTTGCGCTAGCTAAACGCCACCGAGAACAGACAACANG 305
                        *** *** ** ****  *     * **** ***** ********* ******* ***  

consensus_15216#0      ATTTACAGCAAAA-GAAAAAAAAAGAAGGAAGGCTAACCTTTT-TCTGTGGATTTTAGCG 605
consensus_15216#2      ATTTACAGCTAAA-GGCACGAAGA-AAGGAAGGCTAACCTTTT-TCTGTGGATTTTAGCG 305
consensus_15216#1      ATTTACAGCAAAAAGAAAAANAAAAAAGGAAGGCTAACCTTTTGTCTGTGGATTTTAGCG 365
                       ********* *** *  *   * * ****************** ****************

consensus_15216#0      TTCTC-CGGTTTGTGACGAGATGCCTGCGC-TCGCCGTGGACGCCGCTGCACCTGTCG-C 662
consensus_15216#2      TTCTC-CGGTTTGTGACGAGATGCCTGCGC-TCGCCGTGGACGCCGCTGCACCTGTCGGC 363
consensus_15216#1      TTCTCACGGTTTGTGACGAGATGCCTGCGCGTCGCCGTGGACGCCGCTGCACCTGTCG-C 424
                       ***** ************************ *************************** *

consensus_15216#0      GCACGCCTTCGCGTGCGACG-CGGCGCGCTTCCCCGCGCCGCTGCTGGGCCCCGCCGCCG 721
consensus_15216#2      GCACGCCTTCGCGTGCGACGTCGGCGCGCTTCCCCGCGCCGCTGCTGGGCCCACCCGCCA 423
consensus_15216#1      GCACGCCTTCGCGTGCGACG-CGGCGCGCTTCCCCGCGCCGCTGCTGGGCCCCGCCGCCG 483
                       ******************** *******************************  ***** 

consensus_15216#0      CGGCTGCGGCGGTGGCGGAGAAGCCGACC--GCCGCAGCTATTCCTT 766
consensus_15216#2      CGCT--CCGCGGTG-CGGAGAA------------------------- 442
consensus_15216#1      CGGCTGCGGCGGTGGCGGAGAAGCCGACGTAGCCGCAG-TATTCC-- 527
                       **    * ****** *******                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)