These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15234#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1178 fasta sequence [CATTTCCATCTCCGTCGAGCACCCAGCCCCTTCCTCCTCCTCCTCCTCCTCCTCGTCGTTCCGCCTCCGGCCATGGCCGCCGCGCTGTCCGCCGTCGTCTCCGCCAAGCTCGGCTGCCCGCCGGCGGCGGCGCTCGGTAGCTGGAAGGGAAGCAGAATTTCAAGCAGAAACCTGGTCTCCATGAAGACGATGACAGCGAGGAGAGGCCTCGTCTCCCTCAGATCCCCTCGCTTCCGCGTCAGCTGCGCGGTAACTCGCTCGCTAGTGATGCAATGCAAATGGCCTTTAATTTCTTTCATTCTTTCTTTGCCTGAATGTTCAATGATGCAATGCAACGGGCCTTTCTTTCTTTATCTAAATGTTAACGATACAATACAATGGGCATTTCTTTCTCTGTCTGAATGTTCAATGATGCAATGCAATGGCCTTTCTTTCTTTGTCTGAATGTTAACGATGCAATGCAACGGGCATTTCTTTCTTTGTCTGAATGTTCAATGATGCAATGCAATGTGCCTTTCTTTCTTTGTCTGAATGTTAACTATGCAATGCAATGGGGCATTTCTATTGTGTTGTCTGAATGTTTTTCTGAACCTGACGAGATTTTAGGCGAAGGCGGAGACGGTGGGGAAGGTGATGCAGATAGTGAAGCAGCAGCTGGCGCTGGGGGAGGAGGCGAAGCTGGCGCCGGAGTCGCAGTTCACGGAGCTGGGAGCGGACTCGCTGGACACGGTGGAGATCGTGATGGCGCTGGAGGAGGAGTTCGGGATCACCGTGGAGGAGGACAACGCCCAGAGCATCACCACCATCCAGGACGCCGCCGACCTCATCGACAAGCTCGTCGCCGGCGGCGGCGGCAAG-CCCCCCGCCGCCGCCTGAATCTGATCTTCTTCTTCTTCTTCTTCTTGCTCTGAAACCATCGCCACTTCTGTTTGATGAAGAAGAGACGTCAGTCTAGCTAGCTCGAGTAGCACATTTGTCATCAGAGAGAAGTTGATTCTTTGCGCTTCTAGTCATCGATCGGTGTGTATTTGCGTGTAATTTCGAACAATTTTGTCACTTAGGTTGCTCGATTGATTGCTACTACTAGTACTAGTTTACTTATGTACTTTTGCTGCCGTTTTTTTTTTGTTCGGTACAATTTTAAATTTTAGATGATGGGGTTTTCATAAAAAAAAGAA] [+] EMBL CF333667 [CATTTCCATCTCCGTCGAGCACCCAGCCCCTTCCTCCTCCTCCTCCTCCTCCTCGTCGTTCCGCCTCCGGCCATGGCCGCCGCGCTGTCCGCCGTCGTCTCCGCCAAGCTCGGCTGCCCGCCGGCGGCGGCGCTCGGTAGCTGGAAGGGAAGCAGAATTTCAAGCAGAAACCTGGTCTCCATGAAGACGATGACAGCGAGGAGAGGCCTCGTCTCCCTCAGATCCCCTCGCTTCCGCGTCAGCTGCGCGGTAACTCGCTCGCTAGTGATGCAATGCAAATGGCCTTTAATTTCTTTCATTCTTTCTTTGCCTGAATGTTCAATGATGCAATGCAACGGGCCTTTCTTTCTTTATCTAAATGTTAACGATACAATACAATGGGCATTTCTTTCTCTGTCTGAATGTTCAATGATGCAATGCAATGGCCTTTCTTTCTTTGTCTGAATGTTAACGATGCAATGCAACGGGCATTTCTTTCTTTGTCTGAATGTTCAATGATGCAATGCAATGTGCCTTTCTTTCTTTGTCTGAATGTTAACTATGCAATGCAATGGGGCATTTCTATTGTGTTGTCTGAATGTTTTTCTGA ] [+] EMBL CF334833 [CATTTCCATCTCCGTCGAGCACCCAGCCCCTTCCTCCTCCTCCTCCTCCTCCTCGTCGTTCCGCCTCCGGCCATGGCCGCCGCGCTGTCCGCCGTCGTCTCCGCCAAGCTCGGCTGCCCGCCGGCGGCGGCGCTCGGTAGCTGGAAGGGAAGCAGAATTTCAAGCAGAAACCTGGTCTCCATGAAGACGATGACAGCGAGGAGAGGCCTCGTCTCCCTCAGATCCCCTCGCTTCCGCGTCAGCTGCGCGGTAACTCGCTCGCTAGTGATGCAATGCAAATGGCCTTTAATTTCTTTCATTCTTTCTTTGCCTGAATGTTCAATGATGCAATGCAACGGGCCTTTCTTTCTTTATCTAAATGTTAACGATACAATACAATGGGCATTTCTTTCTCTGTCTGAATGTTCAATGATGCAATGCAATGGCCTTTCTTTCTTTGTCTGAATGTTAACGATGCAATGCAACGGGCATTTCTTTCTTTGTCTGAATGTTCAATGATGCAATGCAATGTGCCTTTCTTTCTTTGTCTGAATGTTAACTATGCAATGCAATGG ] [+] EMBL CA753974 [ gaCCCTTCCTCCTCCTCCTCCTCCTCCTCGTCGTTCCGCCTCCGGCCATGGCCGCCGCGCTGTCCGCCGTCGTCTCCGCCAAGCTCGGCTGCCCGCCGGCGGCGGCGCTCGGTAGCTGGAAGGGAAGCAGAATTTCAAGCAGAAACCTGGTCTCCATGAAGACGATGACAGCGAGGAGAGGCCTCGTCTCCCTCAGATCCCCTCGCTTCCGCGTCTGCTGCGCGGTAACTCGCTCGCTAGTGATGCAATGCAAATGGCCTTTAATTTCTTTCATTCTTTCTTTGCCTGAATGTTCAATGATGCAATGCAACGGGCCTTTCTTTCTTTATCTAAATGTTAACGATACAATACAATGGGCATTTCTTTCTCTGTCTGAATGTTCAATGATGCAATGCAATGGCCTTTCTTTCTTTGTCTGAATGTTAACGATGCAATGCAACGGGCATTTCTTTCTTTGTCTGAATGTTCAATGATGCAATGCAATGTGCCTTTCTTTCTTTGTCTGAATGTTAACTATGCAATGCAATGGGGCATTTCTATTGTGTTGTCTGAATGTTTTTCTGAACCTGACGAGATTTTAGGCGAAGGCGGAGACGGT ] [-] EMBL CB674712 [ ATACAATACAATGGGCATTTCTTTCTCTGTCTGAATGTTCAATGATGCAATGCAATGGCCTTTCTTTCTTTGTCTGAATGTTAACGATGCAATGCAACGGGCATTTCTTTCTTTGTCTGAATGTTCAATGATGCAATGCAATGTGCCTTTCTTTCTTTGTCTGAATGTTAACTATGCAATGCAATGGGGCATTTCTATTGTGTTGTCTGAATGTTTTTCTGAACCTGACGAGATTTTAGGCGAAGGCGGAGACGGTGGGGAAGGTGATGCAGATAGTGAAGCAGCAGCTGGCGCTGGGGGAGGAGGCGAAGCTGGCGCCGGAGTCGCAGTTCACGGAGCTGGGAGCGGACTCGCTGGACACGGTGGAGATCGTGATGGCGCTGGAGGAGGAGTTCGGGATCACCGTGGAGGAGGACAACGCCCAGAGCATCACCACCATCCAGGACGCCGCCGACCTCATCGACAAGCTCGTCGCCGGCGGCGGCGGCAAG CCCCCCGCCGCCGCCTGAATCTGATCTTCTTCTTCTTCTTCTTCTTGCTCTGAAACCATCGCCACTTCTGTTTGATGAAGAAGAGACGTCAGTCTAGCTAGCTCGAGTAGCACATTTGTCATCAGAGAGAAGTTGATTCTTTGCGCTTCTAGTCATCGATCGGTGTGTATTTGCGTGTAATTTCGAACAATTTTGTCACTTAGGTTGCTCGATTGATTGCTACTACTAGTACTAGTTTACTTATGTACTTTTGCTGCCGTTTTTTTTTTGTTCGGTACAATTTTAAATTTTAGATGATGGGGTTTTCATAAAAAAAAGA ] [-] EMBL CF291323 [ GGTGATGCAGATAGTGAAGCAGCAGCTGGCGCTGGGGGAGGAGGCGAAGCTGGCGCCGGAGTCGCAGTTCACGGAGCTGGGAGCGGACTCGCTGGACACGGTGGAGATCGTGATGGCGCTGGAGGAGGAGTTCGGGATCACCGTGGAGGAGGACAACGCCCAGAGCATCACCACCATCCAGGACGCCGCCGACCTCATCGACAAGCTCGTCGCCGGCGGCGGCGGCAAGCCCCCCCGCCGCCGCCTGAATCTGATCTTCTTCTTCTTCTTCTTCTTGCTCTGGAACCATCGCCACTTCTGTTTGATGAAGAAGAGACGTCAGTCTAGCTAGCTCGAGTAGCACATTTGTCATCAGAGAGAAGTTGATTCTTTGCGCTTCTAGTCATCGATCGGTGTGTATTTGCGTGTAATTTCGAACAATTTTGTCACTTAGGTTGCTCGATTGATTGCTACTACTAGTACTAGTTTACTTATGTACTTTTGCTGCCGTTTTTTTTTTGTTCGGTACAATTTTAAATTTTAGATGATGGGGTTTTCATAAAAAAAAAAA] [+] EMBL BE230691 [ GAGGCGAAGCTGGCGCCTGAGTCGCAGTTCACGGAGCTGGGAGCGGACTCGCTGGACACGGTGGAGATCGTGATGGCGCTGGAGGAGGAGTTCGGGATCACCGTGGAGGAGGACAATGCCCAGAGCATCACCACCATCCAGGACGCCGCCGACCTCATCGACAAGCTCGTCGCCGGCGGCGGCGGTAAG CCCCCCGCCGCCGCCTGAATCTGATCTTCTTCTTCTTCTTCTTCTTGCT ] [-] EMBL CF309409 [ CGCCGACCTCATAGACAAGCTAGTCGCCGGCGGCGGCGGCAAG CCCCCTGCCGCCGCATGAATCTGATCTTCTTCTTCTTCTTCTTCTTGCTATGAAACCATCGCCATTTCTGTTTGATGAAGAACACACGTCAGTCTAGCTAGCTGGAGTAGCACATTTGTCATCAGACAGAAGTTGATTCTTTGCGCTTCTAGTGATCGATCGGTG GCATTTGCGTGTAATTTCGAACAATTTTGT ] consensusID : consensus_15234#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 858 fasta sequence [CATTTCCATCTCCGTCGAGCACCCAGCCCCTTCCTCCTCCTCCTCCTCCTCCTCGTCGTTCCGCCTCCGGCCATGGCCGCCGCGCTGTCCGCCGTCGTCTCCGCCAAGCTCGGCTGCCCGCCGGCGGCGGCGCTCGGTAGCTGGAAGGGAAGCAGAATTTCAAGCAGAAACCTGGTCTCCATGAAGACGATGACAGCAAGGAGAGGCCTCGTCTCCCTCAGATCCCCTCGCTTCCGCGTCTTCTGCGCGGCGAAGGCGGAGACGG-TG-GGGAAGGTGATGCAGATAGTGAAGCAGCAGCTGGCGCTGGGGGAGGAGGCGAAGCTGG-CGCCGGAGTCGCAGTTCACGGAGCTGGGAGCGGACTCGCTGGACACGGTGGAGATCGTGATGGCGCTGGAGGAGGAGTTCGGGATCACCGTGGAGGAGGACAACGCCCAGAGCATCACCACCATCCAGGACGCCGCCGACCTCATCGACAAGCTCGTCGCCGGCGGCGGCGGC-AAG--CCCCCCGCCGCCGCCTGA-ATCTGATCTTCTTCTTCTTCTTCTTCTTGCTCTGAAACCATCGCCACTTCTGTTTGATGAAGAAGAGACGTCAGTCTAGCT-AGC-TCGAGTAGCACATTTGTCATCAGAGAGAAGTTGATTCTTTGCGCTTCTAGTCATCGATCGGTGTGTATTTGCGTGTAATTTCGAACAATTTTGTCACTTAGGTTGCTCGATTGATTGCTACTACTAGTACTAGTTTACTTATGTACTTTTGCTGCCGTTTTTTTTTTGTTCGGTACAATTTTAAATTTTAGATGATGGGGTTTTCATAAAGCAAAGTAATGTCTGCCTGGCCAAATTATAATTTGGTTATTGTCT] [+] EMBL CF334613 [CATTTCCATCTCCGTCGAGCACCCAGCCCCTTCCTCCTCCTCCTCCTCCTCCTCGTCGTTCCGCCTCCGGCCATGGCCGCCGCGCTGTCCGCCGTCGTCTCCGCCAAGCTCGGCTGCCCGCCGGCGGCGGCGCTCGGTAGCTGGAAGGGAAGCAGAATTTCAAGCAGAAACCTGGTCTCCATGAAGACGATGACAGCGAGGAGAGGCCTCGTCTCCCTCAGATCCCCTCGCTTCCGCGTCTGCTGCGCGGCGAAGGCGGAGACGG TG GGGAAGGTGATGCAGATAGTGAAGCAGCAGCTGGCGCTGGGGGAGGAGGCGAAGCTGG CGCCTGAGTCGCAGTTCACGGAGCTGGGAGCGGACTCGCTGGACACGGTGGAGATCGTGATGGCGCTGGAGGAAGAGTTCGGGATCACCGTGGAGGAAGACAACGCCCAGAGCATCACCACCATCCAGGACGCCGCCGA ] [+] EMBL CF298797 [ ATTTCCATCTCCGTCGAGCACCCAGCCCCTTCCTCCTCCTCCTCCTCCTCCTCGTCGTTCCGCCTCCGGCCATGGCCGCCGCGCTGTCCGCCGTCGTCTCCGCCAAGCTCGGCTGCCCGCCGGCGGCGGCGCTCGGTAGCTGGAAGGGAAGCAGAATTTCAAGCAGAAACCTGGTCTCCATGAAGACGATGACAGCGAGGAGAGGCCTCGTCTCCCTCAGATCCCCTCGCTTCCGCGTCTGCTGCGCGGCGAAGGCGGAGACGG TG GGGAAGGTGATGCAGATAGTGAAGCAGCAGCTGGCGCTGGGGGAGGAGGCGAAGCTGG CGCCTGAGTCGCAGTTCACGGAGCTGGGAGCGGACTCGCTGGACACGGTGGAGATCGTGATGGCGCTGGAGGAGGAGTTCGGGATCACCGTGGAGGAGGACAACGCCCAGAGCATCACCACCATCCAGGACGCCGCCGA ] [+] EMBL AK120212 [ TCTCCGTCGAGCACCCAGCCCCTTCCTCCTCCTCCTCCTCCTCCTCGTCGTTCCGCCTCCGGCCATGGCCGCCGCGCTGTCCGCCGTCGTCTCCGCCAAGCTCGGCTGCCCGCCGGCGGCGGCGCTCGGTAGCTGGAAGGGAAGCAGAATTTCAAGCAGAAACCTGGTCTCCATGAAGACGATGACAGCAAGGAGAGGCCTCGTCTCCCTCAGATCCCCTCGCTTCCGCGTCTTCTGCGCGGCGAAGGCGGAGACGG TG GGGAAGGTGATGCAGATAGTGAAGCAGCAGCTGGCGCTGGGGGAGGAGGCGAAGCTGG CGCCGGAGTCGCAGTTCACGGAGCTGGGAGCGGACTCGCTGGACACGGTGGAGATCGTGATGGCGCTGGAGGAGGAGTTCGGGATCACCGTGGAGGAGGACAACGCCCAGAGCATCACCACCATCCAGGACGCCGCCGACCTCATCGACAAGCTCGTCGCCGGCGGCGGCGGC AAG CCCCCCGCCGCCGCCTGA ATCTGATCTTCTTCTTCTTCTTCTTCTTGCTCTGAAACCATCGCCACTTCTGTTTGATGAAGAAGAGACGTCAGTCTAGCT AGC TCGAGTAGCACATTTGTCATCAGAGAGAAGTTGATTCTTTGCGCTTCTAGTCATCGATCGGTGTGTATTTGCGTGTAATTTCGAACAATTTTGTCACTTAGGTTGCTCGATTGATTGCTACTACTAGTACTAGTTTACTTATGTACTTTTGCTGCCGTTTTTTTTTTGTTCGGTACAATTTTAAATTTTAGATGATGGGGTTTTCATAAAGCAAAGTAATGTCTGCCTGGCCAAATTATAATTTGGTTATTGTCT] [+] EMBL CF291322 [ AGCACCCAGCCCCTTCCTCCTCCTCCTCCTCCTCCTCGTCGTTCCGCCTCCGGCCATGGCCGCCGCGCTGTCCGCCGTCGTCTCCGCCAAGCTCGGCTGCCCGCCGGCGGCGGCGCTCGGTAGCTGGAAGGGAAGCAGAATTTCAAGCAGAAACCTGGTCTCCATGAAGACGATGACAGCAAGGAGAGGCCTCGTCTCCCTCAGATCCCCTCGCTTCCGCGTCTTCTGCGCGGCGAAGGCGGAGACGG GGNGNGAAGGTGATGCANATAGTGAAGCAGCAGCTGGCGCTGGGGGAGGAGGCGAAGCTGG CGCCGGAGTCGCAGTTCACGGAGCTGGGAGCGGACTCGCTGGACACGGTGGAGATCGTGATGGCGCTGGAGGAGGAGTTCGGGATCACCGTGGAGGAGGACAACGCCCAGAGCATCACCACCATCCAGGACGCCG ] [+] EMBL CB647076 [ TTCCTCCTCCTCCTCCTCCTCCTCGTCGTTCCGCCTCCGGCCATGGCCGCCGCGCTGTCCGCCGTCGTCTCCGCCAAGCTCGGCTGCCCGCCGGCGGCGGCGCTCGGTAGCTGGAAGGGAAGCAGAATTTCAAGCAGAAACCTGGTCTCCATGAAGACGATGACAGCAAGGAGAGGCCTCGTCTCCCTCAGATCCCCTCGCTTCCGCGTCTTCTGCGCGGCGAAGGCGGAGACGG TG GGGAAGGTGATGCAGATAGTGAAGCAGCAGCTGGCGCTGGGGGAGGAGGCGAAGCTGG CGCCGGAGTCGCAGTTCACGGAGCTGGGAGCGGACTCGCTGGACACGGTGGAGATCGTGATGGCGCTGGAGGAGGAGTTCGGGATCACCGTGGAGGAGGACAACGCCCAGAGCATCACCACCATCCAGGACGCCGCCGACCTCATCGACAAGCTCGTC ] [-] EMBL CB647077 [ CCTCCTCCTCCTCTTCTTCCTTGT GTTCCGCCTCCGGCCATGGCCGCCGCGCTGTCCGCCGTCGTCTCCGCCAAGCTCGGCTGCCCGCCGGCGGCGGCGCTCGGTAGCTGGAAGGGAAGCAGAATTTCAAGCAGAAACCTGGTCTCCATGAAGACGATGACAGCAAGGAGAGGCCTCGTCTCCCTCAGATCCCCTCGCTTCCGCGTCTTTTGCGCGGCGAAGGCGGAGACGG TG GGGAAGGTGATGCAGATAGTGAAGCAGCAGCTGGCGCTGGGGGAGGAGGCGAAGCTGG CGCCGGAGTCGCAGTTCACGGAGCTGGGAGCGGACTCGCTGGACACGGTGGAGATCGTGATGGCGCTGGAGGAGGAGTTCGGGATCACCGTGGAGGAGGACAACGCCCAGAGCATCACCACCATCCAGGACGCCGCCGACCTCATCGACAAGCTCGTCGCCGGCGGCGGCGGC AAG CCCCCCGCCGCCGCCTGA ATCTGATCTTCTTCTTCTTCTTCTTCTTGCTCTGAAACCATCGCCACTTCTGTTTGATGAAGAAGAGACGTCAGTCTAGCT AGC TCGAGTAGCACATTTGTCATCAGAGAGAAGTTGATTCTTTGCGCTTCTAGTCATCGATCGGTGTGTATTTGCGTGTAATTTCGAACAATTTTGTCACTTAGGTTGCTCGATTGATTGCTACTACTAGTACTAGTTTACTTATGTACTTTTGCTGCCGAGGGTTTTTTGTTCGGTACAATTTT ] [+] EMBL CB679333 [ CCTCCTTCTCCTCGTCGTTCCGCCTCCGGCCATGGCCGCCGCGCTGTCCGCCGTCGTCTCCGCCAAGCTCGGCTGCCCGCCGGCGGCGGCGCTCGGTAGCTGGAAGGGAAGCAGAATTTCAAGCAGAAACCTGGTCTCCATGAAGACGATGACAGCAAGGAGAGGCCTCGTCTCCCTCAGATCCCCTCGCTTCCGCGTCTTCTGCGCGGCGAAGGCGGAGACGG TG GGGAAGGTGATGCAGATAGTGAAGCAGCAGCTGGCGCTGGGGGAGGAGGCGAAGCTGG CGCCGGAGTCGCAGTTCACGGAGCTGGGAGCGGACTCGCTGGACACGGTGGAGATCGTGATGGCGCTGGAGGAGGAGTTCGGGATCACCGTGGAGGAGGACAACGCCCAGAGCATCACCACCATCCAGGACGCCGCCGACCTCATCGACAAGCTC ] [+] EMBL OSC111811 [ CTCCTCCTCGTCGTTCCGCCTCCGGCCATGGCCGCCGCGCTGTCCGCCGTCGTCTCCGCCAAGCTCGGCTGCCCGCCGGCGG GGCGCTCGGTAGCTGGAAGGGAAGCAGAATTTCAAGCAGAAACCTGGTCTCCATGAAGACGATGACAGCAAGGAGAGGCCTCGTCTCCCTCAGATCCCCTCGCTTCCGCGTCTTCTGCGCGGCGAAGGCGGAGACGGTTG GGGAAGGTGATGCAGATAGTNAAGCAGCAGCTGGCGCTGGGGGAGGAGGCGAAG TGGCCGCCGGAGTCGCAGTTCACGGAGCTGGGAGCGGACTCGCTGGACATGGTGGAGATCGTTATGGCGCTTGAGGAGGAGTTCGGGATCACCGTTGAGGAGG ] [+] EMBL OSS12593A [ GAGGCCTCGTCTCCCTCAGATCCCCTCGCTTCCGCGTCTTCTGCGCGGCGAAGGCGGAGACGG TG GGGAAGGTGATGCAGATAGTGAAGCAGCAGCTGGCGCTGGGGGAGGAGGCGAA NTGGNCGCCGGAGTCGCAGTTCACGGAGCTGGGAGCGGACTCGCTGGACACGGTGGAGATCGTNATGGCGCTGGAGGAGGAGTTCGGGATCACCGTGGAGGAGGACAACGCCCAGAGCATCACCACCATCCAGGACGCCGCCGACCTCATCGACAAGCTCGTCGCCNGC GNGGCGGCAAAG CCCCCCGCCGCTGCCTGATNTCTAATCTTCTTCTTCTTCTTCTTCTTGCTCTGAAACCATCGCCACTTCTGTTTNATGAAGAAGAGACGTCA TTTAGCTAAGCTTCGAG ] [-] EMBL CF333666 [ GTGATGCAGATAGTGAACCACCAGCTGGCGCTGGGGGAGGAGGCGAAGCTGG CGCCTGAGTCGCAGTTCACGGAGCTGGGAGCGGACTCGCTGGACACGGTGGAGATCGTGATGGCGCTGGAGGAGGAGTTCGGGATCACCGTGGAGGAGGACAACGCCCAGAGCATCACCACCATCCA GACGCCGCCGACCTCATCGACAAGCTCGTCGCCGGCGGCGGCGGC AAGCCCCCCCCGCCGCCGCCTGA ATACGATCTTCTTCTTCTTCTTCTTCTTGCTCTGAAACCATCGCCACTTCTGTTTGATGAAGAAGAGACGTCAGTCTAGCT AGC TCGAGTAGCACATTTGTCATCAGAGAGAAGTTGATTCTTTGCGCTTCTAGTGATCGATCGGTGTGTATTTGCGTGTAATTTCGAACAATTTTGTCACTTAGGTTGCTCGATTGATTGCTACTACTAGTACTAGTTTACTTATGTACTTTTGCTGCCGTTTTTTTTTTGTTCGGTACAATTTTAAATTTTAGATGATGGGGTTTTCATAAAGCAAAaaaaa ] consensusID : consensus_15234#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 658 fasta sequence [TTTTTTAAAAGATGGTTTACCACTCTTACAATTCTTAGCACACTGTTGCACTACTCTTTGAAGGTTTCCTTGTGCTCTTTCCAGTGTATGACCAAAATTAAAAACCGGGAATTTCAATCCCTTCTTTAATAACATGTCCCATATGTGACCTATGGCGCCATGCATGTCCTACAGGTTTATCTTGTGCAATCTAGTTTCTATTGCCAAACTGCCAATGTCATCTTTACATAAGAATTATTCCAGAAGTGGGCTCATGTAGATGTAATTAACTCCAGCTCTGGTTAATCTGTCAGTGCAAACCTCTTTGTGACGTGCACCACTCTATCTGAAAACTTGCAGGGAAGCAGAATTTCAAGCAGAAACCTGGTCTCCATGAAGACGATGACAGCGAGGAGAGGCCTCGTCTCCCTCAGATCCCCTCGCTTCCGCGTCTGCTGCGCGGCGAAGGCGGAGACGGGGGGGGAAAGGTGATGCAGATAGTGAAGCAGCAGCTGGCGCTGGGGGAGGAGGCGAAGCTGGCGCCTGAGTCGCAGTTCACGGAGCTGGGAGCGGACTCGCTGGACACGGTGGAGATCGTGATGGCGCTGGAGGAGGAGTTCGGGATCACCGTGGAGGAGGACAACGCCCAGAGCATCACCACCATCCAGGACGCCGCCGA] [+] EMBL CF309408 [TTTTTTAAAAGATGGTTTACCACTCTTACAATTCTTAGCACACTGTTGCACTACTCTTTGAAGGTTTCCTTGTGCTCTTTCCAGTGTATGACCAAAATTAAAAACCGGGAATTTCAATCCCTTCTTTAATAACATGTCCCATATGTGACCTATGGCGCCATGCATGTCCTACAGGTTTATCTTGTGCAATCTAGTTTCTATTGCCAAACTGCCAATGTCATCTTTACATAAGAATTATTCCAGAAGTGGGCTCATGTAGATGTAATTAACTCCAGCTCTGGTTAATCTGTCAGTGCAAACCTCTTTGTGACGTGCACCACTCTATCTGAAAACTTGCAGGGAAGCAGAATTTCAAGCAGAAACCTGGTCTCCATGAAGACGATGACAGCGAGGAGAGGCCTCGTCTCCCTCAGATCCCCTCGCTTCCGCGTCTGCTGCGCGGCGAAGGCGGAGACGGGGGGGGAAAGGTGATGCAGATAGTGAAGCAGCAGCTGGCGCTGGGGGAGGAGGCGAAGCTGGCGCCTGAGTCGCAGTTCACGGAGCTGGGAGCGGACTCGCTGGACACGGTGGAGATCGTGATGGCGCTGGAGGAGGAGTTCGGGATCACCGTGGAGGAGGACAACGCCCAGAGCATCACCACCATCCAGGACGCCGCCGA] consensusID : consensus_15234#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 536 fasta sequence [GGTGGGTAAGTAATCCAGTATAGTGAAGCCATCAGCCTGGCCGCTGGGTGGAGAGAGGCCGAANCTGGCGCCTCTGAGTTCGCCAGTTCACCGGAGACTGGGACCGGACCTCGCTGGACCACCGGTGGAGATTCGTGATTGGCAGCTAGGAAGGATGGAGTTTCCGGGATCACCGTGGAAGNGAAGGACAACGCCCATGAGCTATGCACCTACCATGCCTAGGACGCCCGCTCGACCTGCATGCGGACAATGCTGCGTGCGCCGGCGGCAGAGCGCGCAAGCCCCCCGCCGCCGCCTGAATGCTGATTCTTCTTGCTTGCTGTCTTGCTTGCTGTGGCTCTGGAAACCATGCGCCACTGTGCTGGTGTTGGATGGAAGAAGAGACGTGCAGTGCTAAGTCTAGCTCGAGTAGCACATTTGGTGCATGCAGAGAGAANTTTGATTCTGTTGCGCTTCTAGTGATCGATCGGTGTGTATTTGCGTGTAATTTCGAACATTTTGTCACTTACGTTGCTCGATTGATTGCTACTACTAAA] [+] EMBL BQ907948 [GGTGGGTAAGTAATCCAGTATAGTGAAGCCATCAGCCTGGCCGCTGGGTGGAGAGAGGCCGAANCTGGCGCCTCTGAGTTCGCCAGTTCACCGGAGACTGGGACCGGACCTCGCTGGACCACCGGTGGAGATTCGTGATTGGCAGCTAGGAAGGATGGAGTTTCCGGGATCACCGTGGAAGNGAAGGACAACGCCCATGAGCTATGCACCTACCATGCCTAGGACGCCCGCTCGACCTGCATGCGGACAATGCTGCGTGCGCCGGCGGCAGAGCGCGCAAGCCCCCCGCCGCCGCCTGAATGCTGATTCTTCTTGCTTGCTGTCTTGCTTGCTGTGGCTCTGGAAACCATGCGCCACTGTGCTGGTGTTGGATGGAAGAAGAGACGTGCAGTGCTAAGTCTAGCTCGAGTAGCACATTTGGTGCATGCAGAGAGAANTTTGATTCTGTTGCGCTTCTAGTGATCGATCGGTGTGTATTTGCGTGTAATTTCGAACATTTTGTCACTTACGTTGCTCGATTGATTGCTACTACTAAA] consensusID : consensus_15234#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 358 fasta sequence [CGAGCTCGTSCAATTCGWGCASAGGTGAGTTCGGGATCACCGTGGAGGAGGACAACGCCCAGAGCATCACCACCATCCAGGACGCCGCCGACCTCATCGACAAGCTCGTCGCCGGMGGGGCGGCAAGCCCCCCGCCGCCGCCTGAATCTGATCTTCTTCTTCTTCTTCTTCTTGCTCTGAAACCATCGCCACTTCTGTTTGATGAAGAAGAGACGTCAGTCTAGCTAGCTCGAGTAGCACATTTGTCATCAGAGAGAAGTTGATTCTTTGCGCTTCTAGTCATCGAYCGGTGTGTATTTGCGTGTAATTTCGAACAATTTTGTCACTTGAGGKTYGCTCGATTGATTGCTAAAAAAAA] [+] EMBL BE229404 [CGAGCTCGTSCAATTCGWGCASAGGTGAGTTCGGGATCACCGTGGAGGAGGACAACGCCCAGAGCATCACCACCATCCAGGACGCCGCCGACCTCATCGACAAGCTCGTCGCCGGMGGGGCGGCAAGCCCCCCGCCGCCGCCTGAATCTGATCTTCTTCTTCTTCTTCTTCTTGCTCTGAAACCATCGCCACTTCTGTTTGATGAAGAAGAGACGTCAGTCTAGCTAGCTCGAGTAGCACATTTGTCATCAGAGAGAAGTTGATTCTTTGCGCTTCTAGTCATCGAYCGGTGTGTATTTGCGTGTAATTTCGAACAATTTTGTCACTTGAGGKTYGCTCGATTGATTGCTAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15234#0 CATTTCCATCTCCGTCGAGCACCCAGCCCCTTCCTCCTCCTCCTCCTCCTCCTCGTCGTT 60 consensus_15234#4 ------------------------------------------------------------ consensus_15234#3 ------------------------------------------------------------ consensus_15234#1 ------------------------------------------------------------ consensus_15234#2 ------------------------------------------------------------ consensus_15234#0 CCGCCTCCGGCCATGGCCGCCGCGCTGTCCGCCGTCGTCTCCGCCAAGCTCGGCTGCCCG 120 consensus_15234#4 ------------------------------------------------------------ consensus_15234#3 ------------------------------------------------------------ consensus_15234#1 ------------------------------------------------------------ consensus_15234#2 ------------------------------------------------------------ consensus_15234#0 CCGGCGGCGGCGCTCGGTAGCTGGAAGGGAAGCAGAATTTCAAGCAGAAACCTGGTCTCC 180 consensus_15234#4 ------------------------------------------------------------ consensus_15234#3 ------------------------------------------------------------ consensus_15234#1 ------------------------------------------------------------ consensus_15234#2 ------------------------------------------------------------ consensus_15234#0 ATGAAGACGATGACAGCGAGGAGAGGCCTCGTCTCCCTCAGATCCCCTCGCTTCCGCGTC 240 consensus_15234#4 ------------------------------------------------------------ consensus_15234#3 ------------------------------------------------------------ consensus_15234#1 ------------------------------------------------------------ consensus_15234#2 ------------------------------------------------------------ consensus_15234#0 AGCTGCGCGGTAACTCGCTCGCTAGTGATGCAATGCAAATGGCCTTTAATTTCTTTCATT 300 consensus_15234#4 ------------------------------------------------------------ consensus_15234#3 ------------------------------------------------------------ consensus_15234#1 ------------------------------------------------------------ consensus_15234#2 ------------------------------------------------------------ consensus_15234#0 CTTTCTTTGCCTGAATGTTCAATGATGCAATGCAACGGGCCTTTCTTTCTTTATCTAAAT 360 consensus_15234#4 ------------------------------------------------------------ consensus_15234#3 ------------------------------------------------------------ consensus_15234#1 --------------------------------------------------------CATT 4 consensus_15234#2 ------------------------------------------------------------ consensus_15234#0 GTTAACGATACAATACAATGGGCATTTCTTTCTCTGTCTGAATGTTCAATGATGCAATGC 420 consensus_15234#4 ------------------------------------------------------------ consensus_15234#3 ------------------------------------------------------------ consensus_15234#1 TCCATCTCCGTCGAGCACCCAGCCCCTTCCTCCTCCTCCTCCTCCTCCTCGTCGTTCCGC 64 consensus_15234#2 ------------------------------------------------------------ consensus_15234#0 AATGGCCTTTCTTTCTTTGTCTGAATGTTAACGATGCAATGCAACGGGCATTTCTTTCTT 480 consensus_15234#4 ------------------------------------------------------------ consensus_15234#3 ------------------------------------------------------------ consensus_15234#1 CTCCGGCCATGGCCGCCGCGCTGTCCGCCGTCGTCTCCGCCAAGCTCGGCTGCCCGCCGG 124 consensus_15234#2 ------------------------------------------------------------ consensus_15234#0 TGTCTGAATGTTCAATGATGCAATGCAATGTGCCTTTCTTTCTTTGTCTGAATGTTAACT 540 consensus_15234#4 ------------------------------------------------------------ consensus_15234#3 ------------------------------------------------------------ consensus_15234#1 CGGCGGCGCTCGGTAGCTGGAAGGGAAGCAGAATTTCAAGCAGAAACCTGGTCTCCATGA 184 consensus_15234#2 ------------------------------------TTTTTTAAAAGATGGTTTACCACT 24 consensus_15234#0 ATGCAATGCAATGGGGCATTTCTATTGTGTTGTCTGAATGTTTTTCTGAACCTGACGAGA 600 consensus_15234#4 ------------------------------------------------------------ consensus_15234#3 ------------------------------------------------------------ consensus_15234#1 AGACGATGACAGCAAGGAGAGGCCTCGTCTCCCTCAGATCCCCTCGCTTCCGCGTCTTC- 243 consensus_15234#2 CTTACAATTCTTAGCACACTGTTGCACTACTCTTTGAAGGTTTCCTTGTGCTCTTTCCAG 84 consensus_15234#0 TTTTAGGCGAAGGCGGAGACGGTGGGGAAGGTGATGCAGATAGTGAAGCAGCAGCTGGCG 660 consensus_15234#4 ------------------------------------------------------------ consensus_15234#3 --------GGTGGGTAAGTAATCCAGTATAGTGAAGCCATCAGCCTGGCCGCTGGGTGGA 52 consensus_15234#1 TGCGCGGCGAAGGCGGAGACGGTGGGGAAGGTGATGCAGATAGTGAAGCAGCAGCTGGCG 303 consensus_15234#2 TGTATGACCAAAATTAA--AAACCGGGAATTTCAATCCCTTCTTTAATAACATGTCCCAT 142 consensus_15234#0 CTGGGGGAGGAGGCGAAGCTGGCGCCGGAGTCGCAGTTCACGGAGCTGGGAGCGGAC-TC 719 consensus_15234#4 ------------------------------------------------------------ consensus_15234#3 GAGAGGCCGAANCTGGCGCCTCTGAGTTCGCCAGTTCACCGGAGACTGGGACCGGACCTC 112 consensus_15234#1 CTGGGGGAGGAGGCGAAGCTGGCGCCGGAGTCGCAGTTCACGGAGCTGGGAGCGGAC-TC 362 consensus_15234#2 ATGTGACCTATGGCGCCATGCATGTCCTACAGGTTTATCTTG----TGCAATCTAGTTTC 198 consensus_15234#0 GCTGGACA--CGGTGGAGAT-CGTGAT----GGCGCTGGAGGAG-GAGTT--CGGGATCA 769 consensus_15234#4 --------------CGAGCT-CGTSCA----ATTCGWGCASAGGTGAGTT--CGGGATCA 39 consensus_15234#3 GCTGGACCACCGGTGGAGATTCGTGATTGGCAGCTAGGAAGGATGGAGTTTCCGGGATCA 172 consensus_15234#1 GCTGGACA--CGGTGGAGAT-CGTGAT----GGCGCTGGAGGAG-GAGTT--CGGGATCA 412 consensus_15234#2 TATTGCCAAACTGCCAATGT-CATCTTT---ACATAAGAATTATTCCAGAAGTGGGCTCA 254 * * * * * * *** *** consensus_15234#0 CCGTGGAGGAG---GACAACGCCCA-GAGC-AT-CACC-ACCAT--CCAGGACGCCG--C 818 consensus_15234#4 CCGTGGAGGAG---GACAACGCCCA-GAGC-AT-CACC-ACCAT--CCAGGACGCCG--C 88 consensus_15234#3 CCGTGGAAGNGAAGGACAACGCCCATGAGCTATGCACCTACCATGCCTAGGACGCCCGCT 232 consensus_15234#1 CCGTGGAGGAG---GACAACGCCCA-GAGC-AT-CACC-ACCAT--CCAGGACGCCG--C 461 consensus_15234#2 T-GTAGATGTAATTAACTCCAGCTCTGGTTAATCTGTCAGTGCAAACCTCTTTGTGACGT 313 ** ** * ** * * * ** * * * consensus_15234#0 CGACCT---CATCGACAA-GCT-CGT-CGCCGGCGGCGGCG---GCAAGCCCCCCGCCGC 869 consensus_15234#4 CGACCT---CATCGACAA-GCT-CGT-CGCCGGMGG-GGCG---GCAAGCCCCCCGCCGC 138 consensus_15234#3 CGACCTGCATGCGGACAATGCTGCGTGCGCCGGCGGCAGAGCGCGCAAGCCCCCCGCCGC 292 consensus_15234#1 CGACCT---CATCGACAA-GCT-CGT-CGCCGGCGGCGGCG---GCAAGCCCCCCGCCGC 512 consensus_15234#2 GCACCACTCTATCTGAAA-ACT-TGCAGGGAAGCAGAATTTCAAGCAGAAACCTGGTCTC 371 *** ** ** * * * * *** ** * * * consensus_15234#0 CGCCTGAAT-CTGAT-CTTCTT-CTTCTTCTTCTTCTTGCTCTG-------AAACCAT-C 918 consensus_15234#4 CGCCTGAAT-CTGAT-CTTCTT-CTTCTTCTTCTTCTTGCTCTG-------AAACCAT-C 187 consensus_15234#3 CGCCTGAATGCTGATTCTTCTTGCTTGCTGTCTTGCTTGCTGTGGCTCTGGAAACCATGC 352 consensus_15234#1 CGCCTGAAT-CTGAT-CTTCTT-CTTCTTCTTCTTCTTGCTCTG-------AAACCAT-C 561 consensus_15234#2 CATGAAGACGATGAC--AGCGAGGAGAGGCCTCGTCTCCCTCAG--------ATCCCCTC 421 * * *** * ** ** * * ** * consensus_15234#0 GCCACTTC------TGTTTGATG-AAGAAGAGACGT-CAGT-CTAG-----CTAGCTCGA 964 consensus_15234#4 GCCACTTC------TGTTTGATG-AAGAAGAGACGT-CAGT-CTAG-----CTAGCTCGA 233 consensus_15234#3 GCCACTGTG-CTGGTGTTGGATGGAAGAAGAGACGTGCAGTGCTAAGT---CTAGCTCGA 408 consensus_15234#1 GCCACTTC------TGTTTGATG-AAGAAGAGACGT-CAGT-CTAG-----CTAGCTCGA 607 consensus_15234#2 GCTTCCGCGTCTGCTGCGCGGCGAAGGCGGAGACGGGGGGGGAAAGGTGATGCAGATAGT 481 ** * ** * * * * ****** * * ** * * consensus_15234#0 GTAGCA-CATTTGTCAT---CAGAGAGAAGTT-GATT--CT-TTGCGCTTCTAGTCATCG 1016 consensus_15234#4 GTAGCA-CATTTGTCAT---CAGAGAGAAGTT-GATT--CT-TTGCGCTTCTAGTCATCG 285 consensus_15234#3 GTAGCA-CATTTGGTGCATGCAGAGAGAANTTTGATT--CTGTTGCGCTTCTAGTGATCG 465 consensus_15234#1 GTAGCA-CATTTGTCAT---CAGAGAGAAGTT-GATT--CT-TTGCGCTTCTAGTCATCG 659 consensus_15234#2 GAAGCAGCAGCTGGCGC-TGGGGGAGGAGGCGAAGCTGGCGCCTGAGTCGCAGTTCACGG 540 * **** ** ** * ** * * ** * * * * * consensus_15234#0 ATC--GGTGTGTATTTGCGTGTAATTTCGAACAATTT--TGTCACTTA---GGTTGCTCG 1069 consensus_15234#4 AYC--GGTGTGTATTTGCGTGTAATTTCGAACAATTT--TGTCACTTGAG-GKTYGCTCG 340 consensus_15234#3 ATC--GGTGTGTATTTGCGTGTAATTTCGAACA-TTT--TGTCACTTA---CGTTGCTCG 517 consensus_15234#1 ATC--GGTGTGTATTTGCGTGTAATTTCGAACAATTT--TGTCACTTA---GGTTGCTCG 712 consensus_15234#2 AGCTGGGAGCGGACTCGCTGGACACGGTGGAGATCGTGATGGCGCTGGAGGAGGAGTTCG 600 * * ** * * * * ** * * * * * * ** * ** * *** consensus_15234#0 ATTGATTGCTACTACTAGTACTAGTTTACTTATGTACTTTTGCTGCCGTTTTTTTTTTGT 1129 consensus_15234#4 ATTGATTGCTAAAAAAAA------------------------------------------ 358 consensus_15234#3 ATTGATTGCTACTACTAAA----------------------------------------- 536 consensus_15234#1 ATTGATTGCTACTACTAGTACTAGTTTACTTATGTACTTTTGCTGCCGTTTTTTTTTTGT 772 consensus_15234#2 G--GATCACCGTGGAGGAGGACAACGCCCAGAGCATCACCACCATCCAGGACGCCGCCGA 658 *** * consensus_15234#0 TCGGTACAATTTTAAATTTTAGATGATGGGGTTTTCATAAAAAAAAGAA----------- 1178 consensus_15234#4 ------------------------------------------------------------ consensus_15234#3 ------------------------------------------------------------ consensus_15234#1 TCGGTACAATTTTAAATTTTAGATGATGGGGTTTTCATAAAGCAAAGTAATGTCTGCCTG 832 consensus_15234#2 ------------------------------------------------------------ consensus_15234#0 -------------------------- consensus_15234#4 -------------------------- consensus_15234#3 -------------------------- consensus_15234#1 GCCAAATTATAATTTGGTTATTGTCT 858 consensus_15234#2 -------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||