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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15235#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 681 fasta sequence
[ACTGCTCATCGATTTCTCTTCCTGACGGCGACAATGGCGTCGAAGAACAGCAAGCTCTCGGTGTTCTCGGTGCCGGTGGCGCTGGTGGCGCTGATGGTGGTG-TTGGTCGGC-CCGTCGTTCGCGACGGCTGCGGCCGGCGAGGAGTACTAC-GCGGCGTCGCGCGCGC-G-CGGATGGGTGCGAGCCGGG-GCAGGGCGTGGTG-CCCA-AGGACCCGCTGCCGGGGTGCCGGGCGTACCTGCTG-C-GCGGTG-CGGCG-GCGGCGA-CCCGCCGGGGGT-TCGGGC-GCGGTG-CTGCCA-CCA-GCTG-AGGGAGG-TGGC-GGCGC-GCTG-CC-GCTGCGA-CGC-G-CTGC-GC-GCCATGGTGG-AGGTGCTCGTCG-AGGAGG-AGGAGGCGCCGCTGGCGTGCAAGA-AGGGGGCCATGGCC-GCCATCGC-CGAGGGGCTCCCCGGGCG-CGA-CGA-GTGCGACCTCGACACGCGC-GCCGACGACGGCGGATCGCGCCGTTGCCA-C-TTGGTGATTAATTGATATCTGATGCTGTTTAATGATAAATAATA-ATCGCCATTGTTATATTCTAGATTATTTATTTATCAAACGAATAAAATGATTATGGTCGCGTGCTATGCTTGTTCTTGCAACGGTGTGTAATTATCATGTGATGGG-CAATAAAGAG-CAGGTGATGAGTAGTATTTCATA--AAAAAAATGTTTGAAAAA]
[+] EMBL AK107696 [ACTGCTCATCGATTTCTCTTCCTGACGGCGACAATGGCGTCGAAGAACAGCAAGCTCTCGGTGTCGTCGGTGGCGGTGGCGCTGGTGGCGCTGATGGTGGTG GTGGTCGGCGCCGTCG TCGCGACGGCTGCGGGCGGCGAGGAGTACTACGGCGGCGTCGCGCGCGCGG CGGATGGGTGCGAGCCGGG GCAGGGCGTGGTG CCCA AGGACCCGCTGCCGGGGTGCCGGGCGTACCTGCTG CGGCGGTG CGGCG GCGGCGA CCCGCCGGGGGT GCGGGC GCGGTG CTGCCA CCA GCTG AGGGAGG TGGC GGCGC GCTG CC GCTGCGA CGC G CTGC GC GCCATGGTGG AGGTGCTCGTCG AGGAGG AGGAGGCGCCGCTGGCGTGCAAGA AGGGGGCCATGGCC GCCATCGC CGAGGGGCTCCCCGGGCG CGA CGA GTGCGACCTCGACACGCGC GCCGACGACGGCGGATCGCGCCGTTGCCA C TTGGTGATTAATTGATATCTGATGCTGTTTAATGATAAATAATA ATCGCCATTGTTATATTCTAGATTATTTATTTATCAAACGAATAAAATGATTATG ]
[+] EMBL BI796687 [ TCTCTTCCTG CGGCGAC ATGGC TCGAAGAACA CAAGCTCTCGGTG TCTCGGTGC GTGGCCCT GTGGC CTGAT GT GTG TT GTC GC CCGTCGTCCGC GCT CGGC GCGAGGAGTACTAC GCGGCGTCGCGCGC C G CGGATGGGTGCGAGCCGGG GCAGGGCGTGGTG CCCA AGGACCCGCT CCGGGGTGCCGGGCGTACCTGCTG CGGCGGTT C GC GCGGCGA CCC CCGGGGGTGTCGGGC GCGGTG CTGCCA CCA GCTG AGGGAGG T GC GGCGC GCTG CC GCTGCGA CGC G CTGC GC GCCATGGTGG AGGTGCTCGTCG AGGAGG AGGAGGCGCCGCTGGCGTGCAAGA AGGGGGCCATGGCC GCCATCGC CGAGGGGCTCCCCGGGCG CGA CGA GTGCGACCTCGACACGCGC GCCGACGACGGCGGATCGCGCCGTTGCCA C TTGGTGATTAATTGATATCTGATGCTGTTTAATGATAAATAATA ATCGCC TTGTTATATTCTAGATTATTTATTTATC AACGAATAAAATGATTATGGTCGCGTGCTATGCTTGTTCTTGCAAaaaa ]
[+] EMBL BI799652 [ TTCTCGGTGCCGGTGGCGCTGGTGGCGCTGATGTTGTTGTTTGTTCGGC CCGTCGTTCGCGCCGTCTGCGGCCGGCGAGGAGTACTAC GCGGCGTCGCGCGCGC GCCGGATGGGTGCGAGCCGGGCCCAGGGCGTGGTGCCCCA AGGACCCGCTGCCGGGGTGCCGGGCGTACCTGCTG C GCGGTG CGGCG GCGGCGA CCCGCCGGGGTT CCGGGC GCGGTG CTGCCA CCA GCTG AGGGAGG TGGC GGCGC GCTG CC GCTGCGA CGC G CTGC GC GCCATGGTGG AGGTGCTCGTCG AGGAGG AGGAGGCGCCGCTGGCGTGCAAGA AGGGGGCCAT GCC GCCATCGC CGAGGGGCTCCCCGGGCG CGA CGA GTGCGACCTCGACACGCGC GCCGACGACGGCGGATCGCGCCGTTGCCA C TTGGTGATTAATTGATATCTGATGCTGTTTAATGATAAATAATA ATCGCCATTGTTATATTCTAGATTATTTATTTATC AACGAATAAAATGATTATGGTCGCGTGCTATGCTTGTTCTTGCAACGGTGTGTAATTATCATGTGATGGG CAATAAAGAG CAGGTGATGAGTAGTATTTCATA AAAAA ]
[+] EMBL BI797442 [ GGCGAGGAGTACTACGGCGGCGTCGCGCGC C G CGGATGGGTGCGAGCCGGG GCAGGGCGTGGTG CCCA AGGACCCGCTGCC GGGTGCCGGGCGTACCTGCTG C GGCGTG C GCG GCGGCGA CCCGCCGGGGG TCGGGC GCGGTG CTGCCA CCA GCTG AGGGAGG TGGC GGCGC GCTG CC GCTGCGA CGC GTCTGC GC GCCATGGTGG AGGTGCTCGTCG AGGAGG AGGAGGCGCCGCTGGCGTGCAAGA AGGGGGCCAT GCC GCCATCGC CGAGGGGCTCCCCGGGCG CGACCGA GTGCGACCTCGACACGCGC GCCGACGACGGCGGATCGCGCCGTTGCCA C TTGGTGATTAATTGATATCTGATGCTGTTTAATGATAAATAATA ATCGCCATTGTTATATTCTAGATTATTTATTTATCAAACGAATAAAATGATTATGGTCGCGTGCTATGCTTGTTCTTGCAACGGTGTGTAATTATCATGTGATGGGCCAATAAAGAGCCAGGTGATGAGTAGTA AAA AAAAAA ]
[+] EMBL BI796860 [ cGCGAGGAGTACTAC GC GCGTCGCGCGCGCGG CGGAT GGTGCGA CCGGG GCAGGGCGTGGTG CCCA AGGACCCGCTGCC GGGTGCCGGGCGTACCTGCT C GCGGT C GCG GCGGCGA CCCGCCGGGGGT GCGGGC CGGTT CTGCCA CCA GCTG AGGGAGG T GC GGCGC GCTG CC GCTGCGA CGC G CTGC GCTGCCATGGTGG AGGTGCTCGTCG AGGAGG AGGAGGCGCCGCTGGCGTGCAAGA AGGGGGCCATGCCA GCCATCGC CGAGGGGCTCCCCGGGCG CGA CGA GTGCGACCTCGACACGCGC GCCGACGACGGCGGATCGCGCCGTTGCCA CATTGGTGATTAATTGATATCTGATGCTGTTTAATGATAAATAATA ATCGCCATTGTTATATTCTAGATTATTTATTTATCAAACGAATAAAATGATTATGGTCGCGTGCTATGCTTGTTCTTGCAACGGTGTGTAATTATCATGTGATGGG CAATAAAGAG CAGGTGATGAGTAGTATTTCATATTAAAAAAA ]
[+] EMBL BI795088 [ GGCTTCGCGCGCGC G CGGATGGGTGCGAGCCGGG GCAGGGCGTGGTG CCCA AGGACCCGCT CCGGGGTTCCGGGCGTACCTTCTG C GCGGTGTCGGC GCGGCGA CCCGCCGGGGGT GCGGGCAGCGGTG CTGCCA CCA GCTG AGGGAGG TGGCAGGCGC GCTG CCAGCTGCGA CGCAG CTGCAGC GCCATGGTGG AGGTGCTCGTCG AGGAGG AGGAGGCGCCGCTGGCGTGCAAGA AGGGGGCCATGGCC GCCATCGC CGAGGGGCTCCCCGGGCG CGA CGA GTGCGACCTCGACACGCGC GCCGACGACGGCGGATCGCGCCGTTGCCA C TTGGTGATTAATTGATATCTGATGCTGTTTAATGATAAATAATA ATCGCCATTGTTATATTCTAGATTATTTATTTATCAAACGAATAAAATGATTATGGTCGCGTGCTATGCTTGTTCTTGCAACGGTGTGTAATTATCATGTGATGGG CAATAAAGAG CCGGTGATGAGTAGTATTTCATATTTTTACCTTGTTTGAAAAA]
[+] EMBL BI796361 [ CGC C G CGGATGGGTGCGA CC GG GCAGGGCGTGGTG CCCA AGGACCCGCTGCCGGGGTGCCGGGCGTACCTGCTG C GCGGTG C GC GCGGCGA CCC CCGGGG TCGGGC GCGGTG CTGCCA CCA GCTG AGGGAGG T GC GGCGC GCTG CC GCTGCGA CGC GTCTGC GC GCCATGGTGG AGGTGCTCGTCG AGGAGG AGGAGGCGCCGCTGGCGTGCAAGA A GGGGCCAT GCC GCCATCGC CGAGGGGCTCCCCGGGCG CGA CGA GTGCGACCTCGACACGCGC GCCGACGACGGCGGATCGC CCGTTGCCACC TTGGTGATTAATTGATATCTGATGCTGTTTAATGATAAATAATA ATCGCCATTGTTATATTCTAGATTATTTATTTATCAAACGAATAAAATGATTATGGTCGCGTGCTATGCTTGTTCTTGCAACGGTGTGTAATTATCATGTGAT GG CAATAAAGA CAGGTGATGAGTAGTAaaaa ]
[+] EMBL BI797704 [ G CCCATAGGACCCGCTGCCGGGGTGCCGGGCGTACCTGCTGTCGGCGGTG CGGCGTGCGGCGATCCCGCCGGGGGTGTCGGGC TCGGTGTCTGCCATCCATGCTGTAGGGAGGTTGGC GGCGC GCTG CC GCTGCGA CGCAG CTGC GC GCCATGGTGGTAGGTGCTCGTCGTAGGAGGTAGGAGGCGCCGCTGGCGTGCAAGATAGGGGGCCATGGCCAGCCATCGC CGAGGGGCTCCCCGGGCG CGA CGA GTGCGACCTCGACACGCGC GCCGACGACGGCGGATCGCGCCGTTGCCA C TTGGTGATTAATTGATATCTGATGCTGTTTCATGATAAATAATATATCGCCATTGTTATATTCTAGATTATTTATTTATCAAACGGATAAAATGATTATGGTCGCGTGCTATGCTTGTTCTTGCAACGGTGTGTAATTATCATGTGATGGGCCAATAAAGAG CAGGTGATGAGTAGTATTTCCCA AAAAAAAaa ]
[+] EMBL BI797608 [ gtgttC GGCGCTTCTGTCC GCTGCGATCGC G CTGC GCTGCCATGGTGG AGGTGCTCGTCG AGGAGG AGGAGGCGCCGCTGGCGTGCAAGA AGGGGTCCATGGCCTGCCATCGCTCGAGGGGCTCCCCGGGCGTCGA CGATGTGCGACCTCGACACGCGCTGCCGACGACGGCGGATCGCGCCGTTGCCA C TTGGTGATTAATTGATATCTGATGCTGTTTAATGATAAATAATA ATCGCCATTGTTATATTCTAGATTATTTATTTATCAAACGAATAAAATGATTATGGTCGCGTGCTATGCTTGTTCTTGCAACGGTGTGTAATTATCATGTGATGGG CAATAAAGAG CAGGTGATGAGTAGTATTTCATA AAAA ]
[+] EMBL AU101345 [ GCTG CC GCTGCGA CGC G CTGC GC GCCATGGTGG AGGTGCTCGTCG AGGAGG AGGAGGCGCCGCTGGCGTGCAAGA AGGGGGCCATGGCC GCCATCGC CGAGGGGCTCCCCGGGCG CGA CGA GTGCGACCTCGACACGCGC GCCGACGACGGCGGATCGCGCCGTTGCCA C TTGGTGATTAATTGATATCTGATGCTGTTTAATGATAAATAATA ATCGCCATTGTTATATTCTAGATTATTTATTTATCAAACGAATAAAATGATTATGGTCGCGTGCTATGCTTGTTCTTGCAACGGTGTGTAATTATCATGTGATGGG CAATAAAGAG CAGGTGATGAGTAGTATTTCAAA AAAAA ]
[+] EMBL BI796593 [ CGTCG AGGAGG AGGAGGCGCCGCTGGCGTGCAAGA AGGGGGCCATGGCC GCCATCGC CGAGGGGCTCCCCGGGCG CGA CGA GTGCGACCTCGACACGCGC GCCGACGACGGCGGATCGCGCCGTTGCCA C TTGGTGATTAATTGATATCTGATGCTGTTTAATGATAAATAATA ATCGCCATTGTTATATTCTAGATTATTTATTTATC AACGAATAAAATGATTATGGTCGCGTGCTATGCTTGTTCTTGCAAaa ]
consensusID : consensus_15235#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 586 fasta sequence
[AANTACCNNGNAANGGAANAAGNGGTTCNNCGGGGGNNCCNTTAGAAAAANNATCCCCGGGNAAAGATTGCAAGAGNTTNNNNGCGNGNGNATAGAANACCCGGNCANGNNNNNNCCCANGACCNAAGCCGGGGGCCNGGNANACCTAATACCGACGGNGCGGCGGCGGNGACCCCCCGGGGGGNGCGGGNGCGGTGCTGCCACCAGCNTGAGGGAGGTGGCGGCGCGCTNCCCGNTGNGACGCGCTGCGCGCCATGGTGGAGGTGCTCGTCGAGGAGGAGGAGGCCCCGCTGGCGTGCAAGAAGGGGNCCATGGCCGCCATCGCCGAGGGGCTCCCCGGGCGCGACGAGTGCGACCTCGACA-CGC--GCGCCGACGACGGC-GGATCGCGCCGTTGCCACTTGGTGATTAATTGATATCTGATGCTGTTTAATGATAAATAATAATC-GC-CATTGTTATATTCTAGATTATTTATTTATCA-AAC-GAATAAAATGATTATGGTCGCGTGCTATGCTTGTTCTTGCAACGGTGTGTAATTATCATGTGATGGGCAATAAAGAGCAGGTGATGAGTAGTAAAAAAAAAAAAA]
[-] EMBL AA753509 [AANTACCNNGNAANGGAANAAGNGGTTCNNCGGGGGNNCCNTTAGAAAAANNATCCCCGGGNAAAGATTGCAAGAGNTTNNNNGCGNGNGNATAGAANACCCGGNCANGNNNNNNCCCANGACCNAAGCCGGGGGCCNGGNANACCTAATACCGACGGNGCGGCGGCGGNGACCCCCCGGGGGGNGCGGGNGCGGTGCTGCCACCAGCNTGAGGGAGGTGGCGGCGCGCTNCCCGNTGNGACGCGCTGCGCGCCATGGTGGAGGTGCTCGTCGAGGAGGAGGAGGCCCCGCTGGCGTGCAAGAAGGGGNCCATGGCCGCCATCGCCGAGGGGCTCCCCGGGCGCGACGAGTGCGACCTCGACA CGC GCGCCGACGACGGC GGATCGCGCCGTTGCCACTTGGTGATTAATTGATATCTGATGCTGTTTAATGATAAATAATAATC GC CATTGTTATATTCTAGATTATTTATTTATCA AAC GAATAAAATGATTATGGTCGCGTGCTATGCTTGTTCTTGCAACGGTGTGTAATTATCATGTGATGGGCAATAAAGAGCAGGTGATGAGTAGTAAAAAAAAAAAAA]
[+] EMBL BI795082 [ CGAGTGCGACCTCGACACCGCCGGCCCCGACGACGGCAGGATCGC CCGTTGCCACTTGGTGATTAATTGATATCTGATGCTGTTTAATGATAAATAATAATCAGCACATTGTTATATTCTAGATTATTTATTTATCACAACAGAATAAAATGATTATGGTCGCGTGCTATGCTTGTTCTTGCAACGGTGTGTAATTATCATGTGATGGGCAATAAAGAGCAGGTGATGAGTAGTAAAAAAAAAA ]
consensusID : consensus_15235#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 506 fasta sequence
[TGATGGTGTGGTGGTCGGCCCGTCGTCGCGGCGGCTGCGGGCGGCGAGGAGTACTACGCGGCTCGCGCGCGCGCCGGATGGGTGCGAGCCGGGGCAGGGCGTGGTGCCCAAGGACCCGCTGCCGGGGTGCCGGGCGTACCTGCTGCGGCGGTGCGGCGGCGGCGACCCGCCGGGGGTGCGGGCGCGGTGCTGCCATCCAGCTGAGGGAGGTGGCGGCGCGCTGCCGCTGCGACGCGCTGCGCGCCATGGTGGAGGTGCTCGTCGAGGAGGAGGAGGCGCCGCTGGCGTGCAAGAAGGGGGCCATGGCCGCCATCGCCGAGGGGCTCCCCGGGCGCGACGAGTGCGACCTCGACACGCGCGCCGACGACGGCGGATCGCGCCGTTGCCACTTGGTGATTAATTGATATCTGATGCTGTTTAATGATAAATAATAATCGCCATTGTTATATTCTAGATTATTTATTTATCAACGAATAAAATGATTATGGTCGCGTGCAAAAAAAAAA]
[+] EMBL BI799680 [TGATGGTGTGGTGGTCGGCCCGTCGTCGCGGCGGCTGCGGGCGGCGAGGAGTACTACGCGGCTCGCGCGCGCGCCGGATGGGTGCGAGCCGGGGCAGGGCGTGGTGCCCAAGGACCCGCTGCCGGGGTGCCGGGCGTACCTGCTGCGGCGGTGCGGCGGCGGCGACCCGCCGGGGGTGCGGGCGCGGTGCTGCCATCCAGCTGAGGGAGGTGGCGGCGCGCTGCCGCTGCGACGCGCTGCGCGCCATGGTGGAGGTGCTCGTCGAGGAGGAGGAGGCGCCGCTGGCGTGCAAGAAGGGGGCCATGGCCGCCATCGCCGAGGGGCTCCCCGGGCGCGACGAGTGCGACCTCGACACGCGCGCCGACGACGGCGGATCGCGCCGTTGCCACTTGGTGATTAATTGATATCTGATGCTGTTTAATGATAAATAATAATCGCCATTGTTATATTCTAGATTATTTATTTATCAACGAATAAAATGATTATGGTCGCGTGCAAAAAAAAAA]
[+] EMBL BI797335 [ CCATCGCCGAGGGGCTCCCCGGGCGCGACGAGTGCGACCTCGACACGCGCGCCGACGACGGCGGATCGCGCCGTTGCCACTTGGTGATTAATTGATATCTGATGCTGTTTAATGATAAATAATAATCGCCATTGTTATATTCTAaaaaaaaa ]
consensusID : consensus_15235#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 471 fasta sequence
[AGCTATGACCAATGAGTTACCGCCCAAGCTCTAATGACGACGTCACTATTAGGGAAAGCTGGTACAGCACTGCAAGGTACCAGTCCAGGAATTCACCAGGGTCAGACACCCACAGCGTCCGCGTCAGAGGAGGAGGAGGCAGCACAGCTGGCAGTGCAAGAAGGGGCCACATGGCACAGCCATCAGCACAGAGGGGCATCACACACAGGGCAGCAGACAGAGTGCAGACACATCAGACAACAGCAGCAGCACGACGACGGCGGATCGCGCCGTTGCCACTTGGTGATTAATTGATATCTGATGCTGTTTAATGATAAATAATAATCGCCCTTGTTATATTCTAGATTATTTATTTATCCAACGAATAAAATGATTATGGTCGCGTGCTATGCTTGTTCTTGCAACGGTGTGTAATTATCATGTGATGGCCAATAAAGACAGGTGATGAGTAGTATTTCAATAAAAAAAAAA]
[+] EMBL BI797331 [AGCTATGACCAATGAGTTACCGCCCAAGCTCTAATGACGACGTCACTATTAGGGAAAGCTGGTACAGCACTGCAAGGTACCAGTCCAGGAATTCACCAGGGTCAGACACCCACAGCGTCCGCGTCAGAGGAGGAGGAGGCAGCACAGCTGGCAGTGCAAGAAGGGGCCACATGGCACAGCCATCAGCACAGAGGGGCATCACACACAGGGCAGCAGACAGAGTGCAGACACATCAGACAACAGCAGCAGCACGACGACGGCGGATCGCGCCGTTGCCACTTGGTGATTAATTGATATCTGATGCTGTTTAATGATAAATAATAATCGCCCTTGTTATATTCTAGATTATTTATTTATCCAACGAATAAAATGATTATGGTCGCGTGCTATGCTTGTTCTTGCAACGGTGTGTAATTATCATGTGATGGCCAATAAAGACAGGTGATGAGTAGTATTTCAATAAAAAAAAAA]
consensusID : consensus_15235#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 437 fasta sequence
[GAACAGCAAGCTCTCGGTGTCGTCGGTGGCGGTGGCGCTGGTGGCGCTGATGGTGGTGGTGGTCGGCGCCGTCGTCGCGGCGGCTGCGGGCGGCGAGGAGTACTACGGCGGCGTCGCGCGCGCGGCGGATGGGTGCGAGCCGGGGCAGGGCGTGGTGCCCAAGGACCCGCTGCCGGGGTGCCGGGCGTACCTGCTGCGGCGGTGCGGCGGCGGCGACCCGCGGGGGGTGCGGGCGCGGTGCTTGCCACCAGCTTGAGGGAGGTGGCGGCGCGCTTGCCGTTGCGACGCGCTTGCGCGCCAATGGTTGGAGGTGCTTCGTCGAGGAGGAGGAGGCGCCGTTGGCGTTGCAAAGAAGGGGGCAATTGGCCGCATTTGCCCAAGGGGTTTCCCGGGCGCNACGAGTTCGACCTTGACAAGGGCGCCGACGACGGNGATTC]
[+] EMBL OSC919 [GAACAGCAAGCTCTCGGTGTCGTCGGTGGCGGTGGCGCTGGTGGCGCTGATGGTGGTGGTGGTCGGCGCCGTCGTCGCGGCGGCTGCGGGCGGCGAGGAGTACTACGGCGGCGTCGCGCGCGCGGCGGATGGGTGCGAGCCGGGGCAGGGCGTGGTGCCCAAGGACCCGCTGCCGGGGTGCCGGGCGTACCTGCTGCGGCGGTGCGGCGGCGGCGACCCGCGGGGGGTGCGGGCGCGGTGCTTGCCACCAGCTTGAGGGAGGTGGCGGCGCGCTTGCCGTTGCGACGCGCTTGCGCGCCAATGGTTGGAGGTGCTTCGTCGAGGAGGAGGAGGCGCCGTTGGCGTTGCAAAGAAGGGGGCAATTGGCCGCATTTGCCCAAGGGGTTTCCCGGGCGCNACGAGTTCGACCTTGACAAGGGCGCCGACGACGGNGATTC]
consensusID : consensus_15235#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 390 fasta sequence
[CAGGGCGTACACTGCTGCAGGCGGTGCGTGCGGCAGCGACCCGCCAGGGGGTTCTGGGCAGCAGGTGCTGCCACCAGCTGAGGGAGTTGCAGGCAGCTGCTGCCGCTGCGACGCGCTGCGCGCCATGGTGGAGGTGCTCGTCGAGGAGGAGGAGGCCCGCTGGCGTGCAAGAAGGGGCCATGCCGCCATCGCACGAGGGGCTCCCCGGGCGCGACGAGTGCGACCTCGACACGCGCGCCGACGACGGCGGATCGCCCCGTTCCCACTTGGTGATTAATTGATATCTGATCTGTTTAATGATAAATAATAATCCCCATTGTTATATTCTAGATTATTTATTTATCACCGAATAAAATCATTATGTTCCCGTCTATGCTTGTTCTTCCAAAA]
[+] EMBL BI798488 [CAGGGCGTACACTGCTGCAGGCGGTGCGTGCGGCAGCGACCCGCCAGGGGGTTCTGGGCAGCAGGTGCTGCCACCAGCTGAGGGAGTTGCAGGCAGCTGCTGCCGCTGCGACGCGCTGCGCGCCATGGTGGAGGTGCTCGTCGAGGAGGAGGAGGCCCGCTGGCGTGCAAGAAGGGGCCATGCCGCCATCGCACGAGGGGCTCCCCGGGCGCGACGAGTGCGACCTCGACACGCGCGCCGACGACGGCGGATCGCCCCGTTCCCACTTGGTGATTAATTGATATCTGATCTGTTTAATGATAAATAATAATCCCCATTGTTATATTCTAGATTATTTATTTATCACCGAATAAAATCATTATGTTCCCGTCTATGCTTGTTCTTCCAAAA]
consensusID : consensus_15235#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 366 fasta sequence
[TTGTTGGTCCCCCCTTCTCGCGCCGTCTGCGGCCGCGAGGTTTACTACGCGTTTTCGCGCGCCGCCGGATGGGTCCGACCGGCGACCAGGGCGTGGTCCCCAAGCACCCGCTCCCGGGTCCCGGGCGTACCTGCTCGCGTCGCGCGCGACCCCCGGGGTCGGGCCGGTCTCCCACCACTGAGGGAGTGCCGGCGCCTCCCGTTGCGACGCCTGCGCCCATGTTGGAGGTGCTCTTCGAGGAGGAGGAGGCCCCCTGGCGTCCAAGAAGGGGCCCATGCCCCTTTCCCGAGGGGTTCCCCGGGCGCGACGAGTGCGACCTCGACACGCGCCCCGACGACGCCGGTTCGCCCCGTTCCCACCTGGGGG]
[+] EMBL BI800285 [TTGTTGGTCCCCCCTTCTCGCGCCGTCTGCGGCCGCGAGGTTTACTACGCGTTTTCGCGCGCCGCCGGATGGGTCCGACCGGCGACCAGGGCGTGGTCCCCAAGCACCCGCTCCCGGGTCCCGGGCGTACCTGCTCGCGTCGCGCGCGACCCCCGGGGTCGGGCCGGTCTCCCACCACTGAGGGAGTGCCGGCGCCTCCCGTTGCGACGCCTGCGCCCATGTTGGAGGTGCTCTTCGAGGAGGAGGAGGCCCCCTGGCGTCCAAGAAGGGGCCCATGCCCCTTTCCCGAGGGGTTCCCCGGGCGCGACGAGTGCGACCTCGACACGCGCCCCGACGACGCCGGTTCGCCCCGTTCCCACCTGGGGG]
consensusID : consensus_15235#7 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 320 fasta sequence
[GGGCACAACTGGCACAGCACATCAGGCACGAGGGGCTCCACCACGAGGCGCGACGAGTGCAGACACATCGACACGCGCAGCACAGACAGACGGCAGGATCAGCAGCCAGTTGCCACTTGGTGATTAATTGATATCTTGATGCTGTTTAATGATAAATAATAATCGCCATTGTTATATTCTAGATTATTTATTTATCAAACGGAATAAAATGATTATGGTCGCGTGCTATGCTTGTTCTTGCAACGGTGTGTAATTATCATGTGATGGGCAATAAAGAGCAGGTGATGAGTAGTATTTCAAAAAAAAAATAAAAAAAAAAA]
[+] EMBL BI795126 [GGGCACAACTGGCACAGCACATCAGGCACGAGGGGCTCCACCACGAGGCGCGACGAGTGCAGACACATCGACACGCGCAGCACAGACAGACGGCAGGATCAGCAGCCAGTTGCCACTTGGTGATTAATTGATATCTTGATGCTGTTTAATGATAAATAATAATCGCCATTGTTATATTCTAGATTATTTATTTATCAAACGGAATAAAATGATTATGGTCGCGTGCTATGCTTGTTCTTGCAACGGTGTGTAATTATCATGTGATGGGCAATAAAGAGCAGGTGATGAGTAGTATTTCAAAAAAAAAATAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15235#4 --------------------------------------------GAACAGCAAGCTCTCG 16
consensus_15235#6 ------------------------------------------------------------
consensus_15235#2 ------------------------------------------------------------
consensus_15235#0 ACTGCTCATCGATTTCTCTTCCTGACGGCGACAATGGCGTCGAAGAACAGCAAGCTCTCG 60
consensus_15235#5 ------------------------------------------------------------
consensus_15235#1 ------------------------------------------------------------
consensus_15235#3 ------------------------------------------------------AGCTAT 6
consensus_15235#7 ------------------------------------------------------------
consensus_15235#4 GTGTCGTCGGTGGCGGTGGCGCTGGTGGCGCTGATGGTGGTGGTGGTCGGCGCCGTCGTC 76
consensus_15235#6 ---------------------------------------TTGTTGGTC--CCCCCTTCTC 19
consensus_15235#2 -------------------------------TGATGGTG-TGGTGGTCGGC-CCGTCGTC 27
consensus_15235#0 GTGTTCTCGGTGCCGGTGGCGCTGGTGGCGCTGATGGTGGTGTTGGTCGGCCCGTCGTTC 120
consensus_15235#5 ------------------------------------------------------------
consensus_15235#1 -----------------------------AANTACCNNGNAANGGAANAAGNGGTTCNNC 31
consensus_15235#3 GACCAATGAGTTACCGCCCAAGCTCTAATGACGACGTCACTATTAGGGAAAGCTGGTACA 66
consensus_15235#7 ------------------------------------------------------------
consensus_15235#4 GCGGCGGCTGCGGGCGGCGAGGAGTACTACGGCGGCGTCGCGCGCGCGGCGGATGGGTGC 136
consensus_15235#6 GCGCCGTCTGCGGCCG-CGAGGTTTACTACG-CGTTTTCGCGCGC-CGCCGGATGGGTCC 76
consensus_15235#2 GCGGCGGCTGCGGGCGGCGAGGAGTACTACG-CGGC-TCGCGCGCGCGCCGGATGGGTGC 85
consensus_15235#0 GCGACGGCTGCGGCCGGCGAGGAGTACTACG-CGGCGTCGCGCGCGCG-CGGATGGGTGC 178
consensus_15235#5 ------------------------------------------------------------
consensus_15235#1 GGGGGNNCCNTTAGAA-AAANNATCCCCGGGNAAAGATTGCAAGAGNTTNNNNGCGNGNG 90
consensus_15235#3 GCACTGCAAGGTACCAGTCCAGGAATTCACCAGGGTCAGACACCCACAGCGTCCGCGTCA 126
consensus_15235#7 ------------------------------------------------------------
consensus_15235#4 GAGCCGGGGC----AGGGC--GTGGTGCCCAAGGACCCGCTGCCGGGGTGCCGGGCGTAC 190
consensus_15235#6 GACCGGCGACC---AGGGC--GTGGTCCCCAAGCACCCGCTCCCGGG-TCCCGGGCGTAC 130
consensus_15235#2 GAGCCGGGGC----AGGGC--GTGGTGCCCAAGGACCCGCTGCCGGGGTGCCGGGCGTAC 139
consensus_15235#0 GAGCCGGGGC----AGGGC--GTGGTGCCCAAGGACCCGCTGCCGGGGTGCCGGGCGTAC 232
consensus_15235#5 --------------------------------------------------CAGGGCGTAC 10
consensus_15235#1 NATAGAANACC---CGGNCANGNNNNNNCCCANGACCNAAGCCGGGG--GCCNGGNANAC 145
consensus_15235#3 GAGGAGGAGGAGGCAGCACAGCTGGCAGTGCAAGAAGGGGCCACATGGCACAGC-CATCA 185
consensus_15235#7 ------------------------------------GGGCACAACTGGCACAGCACATCA 24
*
consensus_15235#4 -CTGCTGC-GGCGGTGCG-GCGGCGGCGACCCGC--GGGGGGTGCGGGC-GCGGTGCTTG 244
consensus_15235#6 -CTGCT--------CGCG-TCGCGCGCGACCCCC--GGGGT---CGGGC--CGGT--CTC 171
consensus_15235#2 -CTGCTGC-GGCGGTGCG-GCGGCGGCGACCCGC--CGGGGGTGCGGGC-GCGGTG-CTG 192
consensus_15235#0 -CTGCTGC-G-CGGTGCG-GCGGCGGCGACCCGC--CGGGGGTTCGGGC-GCGGTG-CTG 284
consensus_15235#5 ACTGCTGCAGGCGGTGCGTGCGGCAGCGACCCGCCAGGGGGTTCTGGGCAGCAGGTGCTG 70
consensus_15235#1 -CTAATACCGACGGNGCG-GCGGCGGNGACCCCCC-GGGGGGNGCGGGN-GCGGTG-CTG 200
consensus_15235#3 GCACAGAGGGGCATCACACACAG-GGCAGCAGACA----GAGTGCAGAC-ACATCAGACA 239
consensus_15235#7 GGCACGAGGGGCTCCAC-CACGA-GGCG--CGAC-----GAGTGCAGAC-ACATC-GACA 73
* * * * * * *
consensus_15235#4 CCACCAGCTTGAGGGAGGTGGCGGC-GCGCTTGCC-GTTGCGACGCGCTTGCGCGCCAAT 302
consensus_15235#6 CCACCA--CTGAGGGAG-TGCCGGC-GC--CTCCC-GTTGCGACGCCT----GCGCCCAT 220
consensus_15235#2 CCATCCAGCTGAGGGAGGTGGCGGC-GCG-CTGCC-GCTGCGACGCGCT-GCGCGCCATG 248
consensus_15235#0 CCACCAG-CTGAGGGAGGTGGCGGC-GCG-CTGCC-GCTGCGACGCGCT-GCGCGCCATG 339
consensus_15235#5 CCACCAG-CTGAGGGAGTTGCAGGCAGCTGCTGCC-GCTGCGACGCGCT-GCGCGCCATG 127
consensus_15235#1 CCACCAGCNTGAGGGAGGTGGCGGC-GCGCTNCCC-GNTGNGACGCGCT-GCGCGCCATG 257
consensus_15235#3 ACAGCAGCAGCACGACGACGGC-GGATC-GCGCC--GTTGCCACTTGGTGATTAATTGAT 295
consensus_15235#7 CGCGCAGCA-CAGACAGACGGCAGGATCAGCAGCCAGTTGCCACTTGGTGATTAATTGAT 132
* * * * * * * * ** **
consensus_15235#4 GGTTGGAGGTGCTTCGTCGAGGAGGAGGAGGCGCCGTTGGCGTTGCAAAGAAGGGGGCAA 362
consensus_15235#6 G-TTGGAGGTGCTCT-TCGAGGAGGAGGAGGCCCC-CTGGCGT--CCAAGAAGGGGCCCA 275
consensus_15235#2 G--TGGAGGTGCTCG-TCGAGGAGGAGGAGGCGCCGCTGGCGT--GCAAGAAGGGGGCCA 303
consensus_15235#0 G--TGGAGGTGCTCG-TCGAGGAGGAGGAGGCGCCGCTGGCGT--GCAAGAAGGGGGCCA 394
consensus_15235#5 G--TGGAGGTGCTCG-TCGAGGAGGAGGAGGC-CCGCTGGCGT--GCAAGAAGGGG-CCA 180
consensus_15235#1 G--TGGAGGTGCTCG-TCGAGGAGGAGGAGGCCCCGCTGGCGT--GCAAGAAGGGGNCCA 312
consensus_15235#3 ATCT-GATGCTGTTTAATGATAAATAATAATCGCCCTTGTTATATTCTAGATTAT--TTA 352
consensus_15235#7 ATCTTGATGCTGTTTAATGATAAATAATAATCGCCATTGTTATATTCTAGATTAT--TTA 190
* ** * * ** * * * * ** ** * *** *
consensus_15235#4 TTGGCCGCATTTGCCCAAGGGGTTTCCCGGGCGCNACGAGTTCGACCTTGACAAGGGCGC 422
consensus_15235#6 T--GCCCCTTT--CCCGAGGGGTTCCCCGGGCGCGACGAGTGCGACCTCGACACGCGCCC 331
consensus_15235#2 T-GGCCGCCATC-GCCGAGGGGCTCCCCGGGCGCGACGAGTGCGACCTCGACACGCGCGC 361
consensus_15235#0 T-GGCCGCCATC-GCCGAGGGGCTCCCCGGGCGCGACGAGTGCGACCTCGACACGCGCGC 452
consensus_15235#5 T--GCCGCCATCGCACGAGGGGCTCCCCGGGCGCGACGAGTGCGACCTCGACACGCGCGC 238
consensus_15235#1 T-GGCCGCCATC-GCCGAGGGGCTCCCCGGGCGCGACGAGTGCGACCTCGACACGCGCGC 370
consensus_15235#3 TTTATCCAACG-AATAAAATGATTATGGTCGCGTGCTATGCTTGTTCTTGCAACGGTGTG 411
consensus_15235#7 TTTATCAAACGGAATAAAATGATTATGGTCGCGTGCTATGCTTGTTCTTGCAACGGTGTG 250
* * * * * *** * * ** * * *
consensus_15235#4 CGACGACGGNGATTC--------------------------------------------- 437
consensus_15235#6 CGACGACGCCGGTTCGCCCCGTTCCCACCTGGGGG------------------------- 366
consensus_15235#2 CGACGACGGCGGATCGCGCCGTTGCCACTTGGTGATTAATTGATATCTGATGCTGTTTAA 421
consensus_15235#0 CGACGACGGCGGATCGCGCCGTTGCCACTTGGTGATTAATTGATATCTGATGCTGTTTAA 512
consensus_15235#5 CGACGACGGCGGATCGCCCCGTTCCCACTTGGTGATTAATTGATATCTGAT-CTGTTTAA 297
consensus_15235#1 CGACGACGGCGGATCGCGCCGTTGCCACTTGGTGATTAATTGATATCTGATGCTGTTTAA 430
consensus_15235#3 TAATTATCATGTGATGGCCAATAAAGA-CAGGTGATGAGTAGTATTTCAATAAAAAAAAA 470
consensus_15235#7 TAATTATCATGTGATGGGCAATAAAGAGCAGGTGATGAGTAGTATTTCAAAAAAAAAATA 310
* * *
consensus_15235#4 ------------------------------------------------------------
consensus_15235#6 ------------------------------------------------------------
consensus_15235#2 TGATAAATAATAATCGCCATTGTTATATTCTAGATTATTTATTTATCAA-CGAATAAAAT 480
consensus_15235#0 TGATAAATAATAATCGCCATTGTTATATTCTAGATTATTTATTTATCAAACGAATAAAAT 572
consensus_15235#5 TGATAAATAATAATCCCCATTGTTATATTCTAGATTATTTATTTATCAC-CGAATAAAAT 356
consensus_15235#1 TGATAAATAATAATCGCCATTGTTATATTCTAGATTATTTATTTATCAAACGAATAAAAT 490
consensus_15235#3 A----------------------------------------------------------- 471
consensus_15235#7 AAAAAAAAAA-------------------------------------------------- 320
consensus_15235#4 ------------------------------------------------------------
consensus_15235#6 ------------------------------------------------------------
consensus_15235#2 GATTATGGTCGCGTGCAAAAAAAAAA---------------------------------- 506
consensus_15235#0 GATTATGGTCGCGTGCTATGCTTGTTCTTGCAACGGTGTGTAATTATCATGTGATGGGCA 632
consensus_15235#5 CATTATGTTCCCGTCTATGCTTGTTCTTCCAAAA-------------------------- 390
consensus_15235#1 GATTATGGTCGCGTGCTATGCTTGTTCTTGCAACGGTGTGTAATTATCATGTGATGGGCA 550
consensus_15235#3 ------------------------------------------------------------
consensus_15235#7 ------------------------------------------------------------
consensus_15235#4 -------------------------------------------------
consensus_15235#6 -------------------------------------------------
consensus_15235#2 -------------------------------------------------
consensus_15235#0 ATAAAGAGCAGGTGATGAGTAGTATTTCATAAAAAAAATGTTTGAAAAA 681
consensus_15235#5 -------------------------------------------------
consensus_15235#1 ATAAAGAGCAGGTGATGAGTAGTAAAAAAAAAAAAA------------- 586
consensus_15235#3 -------------------------------------------------
consensus_15235#7 -------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||