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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15247#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 798 fasta sequence
[CTCTCTCTCTCTACAGCGACGGCGGCGGCGGCGGCGAGGTGAGAGGAAGGAGAAGGGGATCGA-GGAGGAGGAGGCAAGCGCAGCCACCATGGGAGTGATGGAGAAGCTCAAGATCTTCGCGGTGAAGG-AGCC-CGTCGTCACCGCCTCCTGCCTCATCGCCGGATTCGGTCTTTTTCTTCCAGCAGTTGTCAGACCAATGTTGGATTCTTGGGAGACAGCAAAACAAGTTCCTCCACCTGCGCTGAATGATGTTGTTGCAGGCGTCACCGGCAAGAAAAAGGAGTGACTTGGCATCTTTTCCAC-TTGCTAATGTTGTCGCAACGATTTCTCTTTG-TTTTGACTCCGGATGGGAAGCCTCTCTCAGTCCAGATGATTAGGATCATCCATTCATATGTCCAGCACAGTGTGAAAACAGTACTAC-ATGT-GAT-CGGC---AA-AAT-AATCGTGTTGTACCTGAACTTACTTTCAACATAATGAAA-TTAATGCTGCAATTTTCAGCTTTGAG-CTTGCAAAAAAAAGANGNNCGAGCGGGCGCGCCCCAAACAACACCCGAGCCGGCCCGGTGGCGCTAGCCGCTCATAGATCCATACTTTACGATAAGTGCAGTGCTTATTACATGTGACACGACAACTGTCCTACACCTAATCCTGCACCATCCATTGCCTGGCGTAATCAAGTTCACATTCGCCTTGATTCCAAAGGCGAAGATTCCATCAANATGACAGCTACTCATCACTTCTCACTCACTTCGACATACAAAAGTGCGCTCCTCCCATCACCTCGCGACTCCCATCACTCTCA]
[+] EMBL CA752982 [CTCTCTCTCTCTACAGCGACGGCGGCGGCGGCGGCGAGGTGAGAGGAAGGAGAAGGGGATCGA GGAGGAGGAGGCAAGCGCAGCCACCATGGGAGTGATGGAGAAGCTCAAGATCTTCGCGGTGAAGG AGCC CGTCGTCACCGCCTCCTGCCTCATCGCCGGATTCGGTCTTTTTCTTCCAGCAGTTGTCAGACCAATGTTGGATTCTTGGGAGACAGCAAAACAAGTTCCTCCACCTGCGCTGAATGATGTTGTTGCAGGCGTCACCGGCAAGAAAAAGGAGTGACTTGGCATCTTTTCCAC TTGCTAATGTTGTCGCAACGATTTCTCTTTG TTTTGACTCCGGATGGGAAGCCTCTCTCAGTCCAGATGATTAGGATCATCCATTCATATGTCCAGCACAGTGTG AAACAGTACTAC ATGT GAT CCGCCAGAATAAT AATCGTGTCGTACCTGAACTTACCTTCACCATAATGAAA TAACTGCTGCAATNNTCAGCCTTGAGCCCTGCAAAAACAAGANGNNCGAGCGGGCGCGCCCCAAACAACACCCGAGCCGGCCCGGTGGCGCTAGCCGCTCATAGATCCATACTTTACGATAAGTGCAGTGCTTATTACATGTGACACGACAACTGTCCTACACCTAATCCTGCACCATCCATTGCCTGGCGTAATCAAGTTCACATTCGCCTTGATTCCAAAGGCGAAGATTCCATCAANATGACAGCTACTCATCACTTCTCACTCACTTCGACATACAAAAGTGCGCTCCTCCCATCACCTCGCGACTCCCATCACTCTCA]
[+] EMBL AK120879 [ TCTCTCTACAGCGACGGCGGCGGCGGCGGCGAGGTGAGAGGAAGGAGAAGGGGATCGA GGAGGAGGAGGCGAGCGCAGCCACCATGGGAGTGATGGAGAAGCTCAAGATCTTCGCGGTGAAGG AGCC CGTCGTCACCGCCTCCTGCCTCATCGCCGGATTCGGTCTTTTTCTTCCAGCAGTTGTCAGACCAATGTTGGATTCTTGGGAGACAGCAAAACAAGTTCCTCCACCTGCGCTGAATGATGTTGTTGCAGGCGTCACCGGCAAGAAAAAGGAGTGACTTGGCATCTTTTCCAC TTGCTAATGTTGTCGCAACGATTTCTCTTTG TTTTGACTCCGGATGGGAAGCCTCTCCCAGTCCAGATGATTAGGATCATCCATTCATATGTCCAGCACAGTGTGAAAACAGTACTAC ATGT GAT CGGC AA AAT AATCGTGTTGTACCTGAACTTACTTTCAACATAATGAAA TTAATGCTGCAATT ]
[+] EMBL OS1451A [ GGCGGCGGCGGCGAGGTGAGAGGAAGGAGAAGGGGATCGA GGAGGAGGAGGCAAGCGCA NCACCATGGGAGTGATGGAGAAGCTCAAGATCTTCGCGGTGAAGG AGCC CGTCGTCACCGCCTCCTGCCTCATCGCCGGATTCGGTCTTTTTCTTCCAGCAGTTGTCAGACCAATGTTGGATTCTTGGGAGACAGCAAAACAAGTTCCTCCACCTGCGCTGAATGATGTTGTTGCAGGCGTCACCGGCAAGAAAAAGGAGTTACTTGGCATCTTTTCCACTTTGCTAATGTTGTCGCAACGATTTCTCTTTGTTTTTGACTCCGGATGGGAAGC ]
[-] EMBL BI306742 [ CGGCGGCGGCGAGGTGAGAGGAAGGAGAAGGGGATCGA GGAGGAGGAGGCAAGCGCAGCCACCATGGGAGTGATGGAGAAGCTCAAGATCTTCGCGGTGAAGG AGCC CGTCGTCACCGCCTCCTGCCTCATCGCCGGATTCGGTCTTTTTCTTCCAGCAGTTGTCAGACCAATGTTGGATTCTTGGGAGACAGCAAAACAAGTTCCTCCACCTGCGCTGAATGATGTTGTTGCAGGCGTCACCGGCAAGAAAAAGGAGTGACTTGGCATCTTTTCCAC TTGCTAATGTTGTCGCAACGATTTCTCTTTG TTTTGACTCCGGATGGGAAGCCTCTCTCAGTCCAGATGATTAGGATCATCCATTCATATGTCCAGCACAGTGTGAAAACAGTACTAC ATGT GAT CGGC AA AAT AATCGTGTTGTACCTGAACTTACTTTCAACATAATGAAA TTAATGCT ]
[-] EMBL BI305918 [ GAAGGAGAAGGGGATCGA GGAGGAGGAGGCAAGCGCAGCCACCATGGGAGTGATGGAGAAGCTCAAGATCTTCGCGGTGAAGG AGCC CGTCGTCACCGCCTCCTGCCTCATCGCCGGATTCGGTCTTTTTCTTCCAGCAGTTGTCAGACCAATGTTGGATTCTTGGGAGACAGCAAAACAAGTTCCTCCACCTGCGCTGAATGATGTTGTTGCAGGCGTCACCGGCAAGAAAAAGGAGTGACTTGGCATCTTTTCCAC TTGCTAATGTTGTCGCAACGATTTCTCTTTG TTTTGACTCCGGATGGGAAGCCTCTCTCAGTCCAGATGATTAGGATCATCCATTCATATGTCCAGCACAGTGTGAAAACAGTACTAC ATGT GAT CGGC AA AAT AATCGTGTTGTACCTGAACTTACTTTCAACATAATGAAA TTAATGCTGCAATTTTCAGCTTTGAG CTTGCAAGCAAAgcg ]
[+] EMBL C27884 [ AGGAGAAGGGGATCGA GGAGGAGGAGGCAAGCGCAG CACCATGGGAGTGATGGAGAAGCTCAAGATCTTCGCGGTGAAGG AGCC CGTCGTCACCGCCTCCTGCCTCATCGCCGGATTCGGTCTTTTTCTTCCAGCAGTTGTCAGACCAATGTTGGATTCTTGGGAGACAGCAAAACAAGTTCCTCCACCTGCGCTGAATGATGTTGTTGCAGGCGTCACCGGCAAGAAAAAGGAGTGACTTGGCATCTTTTCCAC TTGCTAATGTTGTCGCAACGATTTCTCTTTG TTTTGACTCCGGATGGGAAGCCTCTCCCAGTCCAGATGATTAGGATCATCCATTCATATGTCCAGCACAGTGTGAAAACAGTACTACAATGTGGATCCGGC AA AATAAATCGTGTTGTACCTGAACTTACTTTCAACATAATGAAATTTAATGCTG ]
[+] EMBL AU161042 [ AAGGGGATCGAGGGAGGAGNAGGCAAGCGCAGCCACCATGGGAGTGATGGAGAAGCTCAAGATCTTCNCGGTGAAGGAAGCCTCGTCGTCACCGCCTCATGCCTCATCGCCGGATTCGGTCTTTTTCTTCCAGCAGTTGTCAGACCAATGTTGGATTCTTGGGAGACAGCAAAACAAGTTCCTCCACCTGCGCTGAATGATGTTGTTGCAGGCGTCACCGGCAAGAAAAAGGAGTGACTTGGCATCTTTTCCNC TTGCTAATGTTGTCGCAACGATTTCTCTTTG TTTTGACTCCGGATGGGAAGCCTCTCCCAGTCCAGATGATTAGGATCATCCATTCATATGTCCAGCACAGTGTGAAAACAGTACTAC ATGT GAT CGGC AA AAT AATCGTGTTGTACCTGAACTTACTTTCAACATAATGAAA TTAATGCTGCAATTTTCAGCTTTGAG CTTGCAAAAAAAAaaaaaa ]
[-] EMBL BI305773 [ GCAAGCGCACCCCCCATGGGAGTGATGGAGAAGCTCAAGATTTTCGCGGTGAAGG AGCC CGTTGTCCCCCCCTCCTGCCTTATCGCGGGATTGGGTTTTTTTTTTCCAGCAGTTGTCAGACCAATGTTGGATTTTTGGGAGACAGCAAAACAAGTTCCTCCCCCTGCGCTGAATAATGTTGTTGCAGGGGTCCCCGGCAAAAAAAAGGAGTGACTTGGCATTTTTTCCAC TTGCTAATGTTGTCGCAACGATTTTTTTTTG TTTTGACTCCGGATGGGAAGCCTTTTTCAGTCCAGATGATTAGGATCATCCATTCATATGTCCAGCCCAGTGTGAAAACAGTACTAC ATGT GAT CGGC AA AAT AATCGTGTTGTCCCTGAACTTACTTTCAACAAAATGAAA TTAATGCTGCAATTTTCAGCTT ]
consensusID : consensus_15247#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 529 fasta sequence
[GGAGACAGGGGATCAGAGGAGAGAGGAGGCATAGCGCACGCCAACCATAGGGAGTGNATGGAGAAGCTCNAAGATCTTTCGCNGGTGAGAGGAGCACCGTCCGTCACACGCCTTCCTAGCCTCATGCGCCGCGATATCGGTCTTTTGTCGTTCACAGCGAGTGTGTCAGGACCACATGTTGCGATATCTTGTGGAGACCAGCTAAAACAATGTTTCCTACCACCGTGCGCGTGAATGGATGTGTGTTGTCAGCGCGTCACCCGGCAAAGTAAAAAAGGAGTGTACTGTGGCATCTTTTCCAGCATTGCTAAATGTTGATCGCACACGATTTCTCTTTCGTTTTGACGCCCGGTATGGGAAGCCTCTCATCAGTCCACGATGATTACGGATCATCNCATTCATATGTCCAGCATCAGTGTGAAAACAGTACTACATGTGATCGGCAAAATAATCGTGTTGTACCTGAACTTACTTTCAACATAATGAAATTAATGCTGCATTTTCAGCTTTGAGCTTGCAAGCAAAGCGT]
[-] EMBL BU672928 [GGAGACAGGGGATCAGAGGAGAGAGGAGGCATAGCGCACGCCAACCATAGGGAGTGNATGGAGAAGCTCNAAGATCTTTCGCNGGTGAGAGGAGCACCGTCCGTCACACGCCTTCCTAGCCTCATGCGCCGCGATATCGGTCTTTTGTCGTTCACAGCGAGTGTGTCAGGACCACATGTTGCGATATCTTGTGGAGACCAGCTAAAACAATGTTTCCTACCACCGTGCGCGTGAATGGATGTGTGTTGTCAGCGCGTCACCCGGCAAAGTAAAAAAGGAGTGTACTGTGGCATCTTTTCCAGCATTGCTAAATGTTGATCGCACACGATTTCTCTTTCGTTTTGACGCCCGGTATGGGAAGCCTCTCATCAGTCCACGATGATTACGGATCATCNCATTCATATGTCCAGCATCAGTGTGAAAACAGTACTACATGTGATCGGCAAAATAATCGTGTTGTACCTGAACTTACTTTCAACATAATGAAATTAATGCTGCATTTTCAGCTTTGAGCTTGCAAGCAAAGCGT]
consensusID : consensus_15247#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 502 fasta sequence
[AGGGAAAGCGGGCGTGGTTGGATCGGCGACGAGGAGCGATGGGGGCGATGGGGAAGCTGAGGGTCTTCGTGGTGCAGGAGCCGGTCGTCGCCGCCTCCTGCCTCATCGCCGGCTTCGGTCTTTTTCTTCCAGCTGTTGTTAGGCCCATACTGGATTCATTTGAGACTGCCAAACAAGCTCCCCCAACCAACTCTCAGTGATATTATCGAACATCAGTATCTATCTCAATGCTTTTTAATTCTCCTTGTGGGGCACCTATAAAGATGAGTGGATTACTGATGTCAGTGTCGATACGTGGCAACCTTGGGTGAATAGGCTGCTACTTTTGTCCGTTTGGAGCTTGAATTGTTGAATACTTTGTGCTTCTCCCAGCGTGGAATGTTGAAAAATGAAAACACACATAGCCCTCGTGGCGATTTGATCAGTGTCTGATGTCGCAGACCTTAAAGACGTTGATCGTTGAGCTTACGCTGCGATGACATATGCTCAAAATTAATCAGAT]
[+] EMBL AK063120 [AGGGAAAGCGGGCGTGGTTGGATCGGCGACGAGGAGCGATGGGGGCGATGGGGAAGCTGAGGGTCTTCGTGGTGCAGGAGCCGGTCGTCGCCGCCTCCTGCCTCATCGCCGGCTTCGGTCTTTTTCTTCCAGCTGTTGTTAGGCCCATACTGGATTCATTTGAGACTGCCAAACAAGCTCCCCCAACCAACTCTCAGTGATATTATCGAACATCAGTATCTATCTCAATGCTTTTTAATTCTCCTTGTGGGGCACCTATAAAGATGAGTGGATTACTGATGTCAGTGTCGATACGTGGCAACCTTGGGTGAATAGGCTGCTACTTTTGTCCGTTTGGAGCTTGAATTGTTGAATACTTTGTGCTTCTCCCAGCGTGGAATGTTGAAAAATGAAAACACACATAGCCCTCGTGGCGATTTGATCAGTGTCTGATGTCGCAGACCTTAAAGACGTTGATCGTTGAGCTTACGCTGCGATGACATATGCTCAAAATTAATCAGA ]
[+] EMBL OSC19561 [ AAGCGGGCGTGGTTGGATCGGCGACGAGGAGCGATGGGGGCGATGGGGAAGCTGAGGGTCTTCGTGGTGCAGGAGCCGGTCGTCGCCGCCTCCTGCCTCATCGCCGGCTTCGGTCTTTTTCTTCCAGCTGTTGTTAGGCCCATACTGGATTCATTTGAGACTGCCAAACAAGCTCCCCCAACCAACTCTCAGTGATATTATCGAACATCAGTATCTATCTCAATGCTTTTTAATTCTCCTTGTGGGGCACCTATAAAGATGAGTGGATTACTGATGTCAGTGTCGATACGTGGCAACCTTGGGTGAATAGGCTGCTACTTTTGTCCGTTTGGAGCTTGAATTGTTGAATACTTTGTGCTTC ]
[+] EMBL AU029459 [ TTGGATCGGCGACGAGGAGCGATGGGGGCGATGGGGAAGCTGAGGGTCTTCGTGGTGCAGGAGCCGGTCGTCGCCGCCTCCTGCCTCATCGCCGGCTTCGGTCTTTTTCTTCCAGCTGTTGTTAGGCCCATACTGGATTCATTTGAGACTGCCAAACAAGCTCCCCCAACCAACTCTCAGTGATATTATCGAACATCAGTATCTATCTCAATGCTTTTTAATTCTC ]
[-] EMBL BI305825 [ CGACGAGGAGCGATGGGGGCGATGGGGAAGCTGAGGGTCTTCGTGGTGCAGGAGCCGGTCGTCGCCGCCTCCTGCCTCATCGCCGGCTTCGGTCTTTTTCTTCCAGCTGTTGTTAGGCCCATACTGGATTCATTTGAGACTGCCAAACAAGCTCCCCCAACCAACTTTCAGTGATATTATCGAACATCAGTATCTATCTCAATGCTTTTTAATTCTCCTTGTGGGGCACCTATAAAGATGAGTGGATTACTGATGTCAGTGTCGACACGTGGCAACCTTGGGTGAATAGGCTGCTACTTTTGTCCGTTTGGAGCTTGAATTGTTGAATACTTTGTGCTTCTCCCAGCGTGGAATGTTGAAAAATGAAAACACACGTAGCCCTCGTGGCGATTTGATCAGTGTCTGATGTCGCAGACCTTAAAGACGTTGATCGTTGAGCTTACGCTGCGATGACATATGCTCAAAATTAATCAGAT]
[-] EMBL CF298389 [ GTTAGGCCCATACTGGATTCATTTGAGACTGCCAAACAAGCTCCCCCAACCAACTCTCAGTGATATTATCGAACATCAGTATCTATCTCAATGCTTTTTAATTCTCCTTGTGGGGCACCTATAAAGATGAGTGGATTACTGATGTCAGTGTCGATACGTGGCAACCTTGGGTGAATAGGCTGCTACTTTTGTCCGTTTGGAGATTGAATTGTTGAATACTTTGTGCTTCTCCCAGCGTGGAAAG TATTAAATGAAAACACACATAGCCCTCGTGGCGATTTGATCAGTGTCTGATGTCGCAGACCTTAAAGACGTTGATCGTTGAGCTTACGCTGCGATGACATATGCTCAAAATTAAT ]
[+] EMBL AU101396 [ TTAANTCTCCTTGTGGGGCACCTATAAAGATGAGTGGATTNCTGATGTCAGTGTCGATACGTGGCAACCTTGGGTGAATAGGCTGCTACTTTTGNCCGTTTGGAGCTTGAATTGTTGAATACTTTGTGCTTCTCCCAGCGTGGAATGTTGAAAANTGNACACACACATAGCCCNCGTGGCGATTTGATCAGTGTCTGATGTCGCAGACCTTAAAGACGNTGAaaaanaaan ]
consensusID : consensus_15247#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 442 fasta sequence
[GGCGTCACCGGCAAGAAAAAGGAGTGACTTGGCATCTTTTCCACTTGCTAATGTTGTCGCAACGATTTCTCTTTGTTTTGACTCCGGATGGGAAGCCTCTCCCAGTCCAGATGATTAGGATCATCCATTCATATGTCCAGCACAGTGTGAAAACAGTACTACATGTGATCGGCAAAATAATCGTGTTGTACCTGAACTTACTTTCAACATAATGAAATTAATGCTGCAATTTTCAGCTTTGAGCTTGCAAGCAAAGCGTGTGGATTGATTGGTAGCCTTAACCTATATCGTAAAATTGCTGGTGCCGATTGGTTCTGTGAAGATTTACACCAGCAGATTAGTTGTGGGCAACATTCTCTTGTGTGCAGCACTATCGTCAGTGGGCCACGCTTGCTTGAGCAAGCTGGTGAAGTCAGTACTGGGCTTGGGAAGCAAAGCCTTG]
[+] EMBL C72453 [GGCGTCACCGGCAAGAAAAAGGAGTGACTTGGCATCTTTTCCACTTGCTAATGTTGTCGCAACGATTTCTCTTTGTTTTGACTCCGGATGGGAAGCCTCTCCCAGTCCAGATGATTAGGATCATCCATTCATATGTCCAGCACAGTGTGAAAACAGTACTACATGTGATCGGCAAAATAATCGTGTTGTACCTGAACTTACTTTCAACATAATGAAATTAATGCTGCAATTTTCAGCTTTGAGCTTGCAAGCAAAGCGTGTGGATTGATTGGTAGCCTTAACCTATATCGTAAAATTGCTGGTGCCGATTGGTTCTGTGAAGATTTACACCAGCAGATTAGTTGTGGGCAACATTCTCTTGTGTGCAGCACTATCGTCAGTGGGCCACGCTTGCTTGAGCAAGCTGGTGAAGTCAGTACTGGGCTTGGGAAGCAAAGCCTTG]
consensusID : consensus_15247#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 382 fasta sequence
[GATGGAAAAGCTCAAATTTTTTCCGGTAAAGGAGCCCTTTGTCCCCCCCTCCTCCCTTATCGCGGGATTGGGTTTTTTTTTTCCACCAGTTGTCAACCCAATGTTGGATTTTTGGGAGACAGCAAAACAAGTTCCCCCCCCTGCGTTAAAAAATGTTGTTGCAGGGGTCCCCGGCAAAAAAAAGGAGTGACTTGGCATTTTTTCCCCTTGCAAAGGTTGTCGCAACGATTTTTTTTTGTTTTGACCCCGGAGGGGAACCCTTTTTCAGTCCAAATGATTGGGTTCCCCCCTTTAAATGTCCAGCCCAGGGTGAAAACAGTACTACATGTGTTGGGCAAAAAAATGGGGTTGGCCCTGAACTTCCTTTCCACAAAATGAAATT]
[-] EMBL BI305875 [GATGGAAAAGCTCAAATTTTTTCCGGTAAAGGAGCCCTTTGTCCCCCCCTCCTCCCTTATCGCGGGATTGGGTTTTTTTTTTCCACCAGTTGTCAACCCAATGTTGGATTTTTGGGAGACAGCAAAACAAGTTCCCCCCCCTGCGTTAAAAAATGTTGTTGCAGGGGTCCCCGGCAAAAAAAAGGAGTGACTTGGCATTTTTTCCCCTTGCAAAGGTTGTCGCAACGATTTTTTTTTGTTTTGACCCCGGAGGGGAACCCTTTTTCAGTCCAAATGATTGGGTTCCCCCCTTTAAATGTCCAGCCCAGGGTGAAAACAGTACTACATGTGTTGGGCAAAAAAATGGGGTTGGCCCTGAACTTCCTTTCCACAAAATGAAATT]
consensusID : consensus_15247#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 370 fasta sequence
[GAAAGCGGGCGTGGTTGGATCGGCGACGAGGAGCGATGGGGGCGATGGGGAAGCTGAGGGTCTTCGTGGTGCAGGAGCCGGTCGTCGCCGCCTCCTGCCTCATCGCCGGCTTCGGTCTTTTTCTTCCAGCTGTTGTTAGGCCCATACTGGATTCATTTGAGACTGCCAAACAAGCTCCCCCAACCAACTCTCAGTGATGTTTTGTATTCCATAAATAAGGCAGCAAGCAGAAAGACGATGAACCCTGTAGATTGCAGTTTTGCTCACACAGTCACAACGCTTGAAATTCTNCTCTCTTTCTATTTGGTAATGGCTCTTTTAAATTATCGGGATTNTAAGGTACCGTAAGAATTCNATTTCCCTTTTCTAC]
[+] EMBL C27596 [GAAAGCGGGCGTGGTTGGATCGGCGACGAGGAGCGATGGGGGCGATGGGGAAGCTGAGGGTCTTCGTGGTGCAGGAGCCGGTCGTCGCCGCCTCCTGCCTCATCGCCGGCTTCGGTCTTTTTCTTCCAGCTGTTGTTAGGCCCATACTGGATTCATTTGAGACTGCCAAACAAGCTCCCCCAACCAACTCTCAGTGATGTTTTGTATTCCATAAATAAGGCAGCAAGCAGAAAGACGATGAACCCTGTAGATTGCAGTTTTGCTCACACAGTCACAACGCTTGAAATTCTNCTCTCTTTCTATTTGGTAATGGCTCTTTTAAATTATCGGGATTNTAAGGTACCGTAAGAATTCNATTTCCCTTTTCTAC]
consensusID : consensus_15247#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 270 fasta sequence
[CCTGCGCTGAATGATGTTGTTGCAGGCGTCACCGGCAAGAAAAAGGAGTGACTTGGCATCTTTTCCACTTGCTAATGTTGTCGCAACGATTTCTCTTTGTTTTGACTCCGGATGGGAAGCCTCTCCCAGTCCAGATGATTAGGATCATCCATTCATATGTCCAGCACAGTGTGAAAACAGTACTACATGTGATCGGCAAAATAATCGTGTTGTACCTGAACTTACTTTCAACATAATGAAATTAATGCTGCAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU057702 [CCTGCGCTGAATGATGTTGTTGCAGGCGTCACCGGCAAGAAAAAGGAGTGACTTGGCATCTTTTCCACTTGCTAATGTTGTCGCAACGATTTCTCTTTGTTTTGACTCCGGATGGGAAGCCTCTCCCAGTCCAGATGATTAGGATCATCCATTCATATGTCCAGCACAGTGTGAAAACAGTACTACATGTGATCGGCAAAATAATCGTGTTGTACCTGAACTTACTTTCAACATAATGAAATTAATGCTGCAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_15247#7 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 201 fasta sequence
[TGGGTTTATAGGTGCCCCACAAGGAGAATTAAAAAGATGAGTGGATTACTGATGTCAGTGTCGATACGTGGCAACCTTGGGTGAATAGGCTGCTACTTTTGTCCGTTTGGAGCTTGAATTGTTGAATACTTTGTGCTTCTCCCAGCGTGGAATGTTGAAAAATGAAAACACACATAGCCCTCGTGGCGATTTGATCAAAAA]
[+] EMBL AU077568 [TGGGTTTATAGGTGCCCCACAAGGAGAATTAAAAAGATGAGTGGATTACTGATGTCAGTGTCGATACGTGGCAACCTTGGGTGAATAGGCTGCTACTTTTGTCCGTTTGGAGCTTGAATTGTTGAATACTTTGTGCTTCTCCCAGCGTGGAATGTTGAAAAATGAAAACACACATAGCCCTCGTGGCGATTTGATCAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15247#3 ------------------------------------------------------------
consensus_15247#6 ------------------------------------------------------------
consensus_15247#1 ----------GGAGACAGGGGATCAGAGGAGAGAGGAGGCATAGCGCACGCCAACCATAG 50
consensus_15247#0 CTCTCTCTCTCTACAGCGACGGCGGCGGCGGCGGCGAGGTGAGAGGAAGGAGAAGGGGAT 60
consensus_15247#4 ------------------------------------------------------------
consensus_15247#2 ------------------------------------------------------------
consensus_15247#7 ------------------------------------------------------------
consensus_15247#5 ------------------------------------------------------------
consensus_15247#3 ------------------------------------------------------------
consensus_15247#6 ------------------------------------------------------------
consensus_15247#1 GGAGTGNATGGAGAAGCTCNAAGATCTTTCGCNGGTGAGAGGAGCACCGTCCGTCACACG 110
consensus_15247#0 CGAGGAGGAGGAGGCAAGCGCAGCCACCATGGGAGTGATGGAGAAGCTCAAGATCTTCGC 120
consensus_15247#4 ------------------------------------GATGGAAAAGCTCAAATTTTTTCC 24
consensus_15247#2 ---------------------------------------------------AGGGAAAGC 9
consensus_15247#7 ------------------------------------------------------------
consensus_15247#5 ------------------------------------------------------GAAAGC 6
consensus_15247#3 ------------------------------------------------------------
consensus_15247#6 ------------------------------------------------------------
consensus_15247#1 CCTTCCTAGCCTCATGCGCCGCGATATCGGTCTTTTGTCGTTCACAGCGAGTGTGTCAGG 170
consensus_15247#0 GGTGAAGGAGCCCGTCGTCACCGCCTCCTGCCTCATCGC---CGGATTCGGTCTTTTTCT 177
consensus_15247#4 GGTAAAGGAGCCCTTTGTCCCCCCCTCCTCCCTTATCGC---GGGATTGGGTTTTTTTTT 81
consensus_15247#2 GGGCGTGGTTGGATCGGCGACGAGGAGCGATGGGGGCGATGGGGAAGCTGAGGGTCTTCG 69
consensus_15247#7 ------------------------------------------------------------
consensus_15247#5 GGGCGTGGTTGGATCGGCGACGAGGAGCGATGGGGGCGATGGGGAAGCTGAGGGTCTTCG 66
consensus_15247#3 ------------------------------------------------------------
consensus_15247#6 ----------------------------------------------------------CC 2
consensus_15247#1 ACCACATGTTGCGATATCTTGTGGAGACCAGCTAAAACAATGTTTCCTACCACCGTGCGC 230
consensus_15247#0 TCCAGCAGTTGTCAGACCAATGTTGGATTCTTGGGAGACAGCAAAACAAGTTCCTCCACC 237
consensus_15247#4 TCCACCAGTTGTCAACCCAATGTTGGATTTTTGGGAGACAGCAAAACAAGTTCCCCCCCC 141
consensus_15247#2 TGGTGCAGGAGCCGGTCGTCGCCGCCTCCTGCCTCATCGCCGGCTTCGGTCTTTTTCTTC 129
consensus_15247#7 ------------------------------------------------------------
consensus_15247#5 TGGTGCAGGAGCCGGTCGTCGCCGCCTCCTGCCTCATCGCCGGCTTCGGTCTTTTTCTTC 126
consensus_15247#3 ----------------------GGCGTCACC-GGCAAG---AAAAAGGAGTG-ACT-TGG 32
consensus_15247#6 TGCGCTGAATGATGTTGTTGCAGGCGTCACC-GGCAAG---AAAAAGGAGTG-ACT-TGG 56
consensus_15247#1 GTGAATGGATGTGTGTTGTCAGCGCGTCACCCGGCAAAGTAAAAAAGGAGTGTACTGTGG 290
consensus_15247#0 TGCGCTGAATGATGTTGTTGCAGGCGTCACC-GGCAAG---AAAAAGGAGTG-ACT-TGG 291
consensus_15247#4 TGCGTTAAAAAATGTTGTTGCAGGGGTCCCC-GGCAAA---AAAAAGGAGTG-ACT-TGG 195
consensus_15247#2 CAGCTGTTGTTAGGCCCATACTGGATTCATTTGAGACTGCCAAACAAGCTCCCCCAACCA 189
consensus_15247#7 ------------------------------------------------------------
consensus_15247#5 CAGCTGTTGTTAGGCCCATACTGGATTCATTTGAGACTGCCAAACAAGCTCCCCCAACCA 186
consensus_15247#3 CATCTTTTCCAC--TTGCTAA-TGTTG-TCGCA-ACGATTTCTCTTT-GTTTTGACTCCG 86
consensus_15247#6 CATCTTTTCCAC--TTGCTAA-TGTTG-TCGCA-ACGATTTCTCTTT-GTTTTGACTCCG 110
consensus_15247#1 CATCTTTTCCAGCATTGCTAAATGTTGATCGCACACGATTTCTCTTTCGTTTTGACGCCC 350
consensus_15247#0 CATCTTTTCCAC--TTGCTAA-TGTTG-TCGCA-ACGATTTCTCTTT-GTTTTGACTCCG 345
consensus_15247#4 CATTTTTTCCCC--TTGCAAA-GGTTG-TCGCA-ACGATTTTTTTTT-GTTTTGACCCCG 249
consensus_15247#2 ACTCTCAGTGATATTATCGAACATCAGTATCTATCTCAATGCTTTTTAATTCTCCTTGTG 249
consensus_15247#7 --------------------------------------TGGGTTTATAGGTGCCCCACAA 22
consensus_15247#5 ACTCTCAGTGATGTTTT---------------------GTATTCCATAAATAAGGCAGCA 225
* * *
consensus_15247#3 G--ATGGGAAGCCTCTC-CCAGTCCA-GATGATTA-GGATCATCC-ATTCATATGTCCAG 140
consensus_15247#6 G--ATGGGAAGCCTCTC-CCAGTCCA-GATGATTA-GGATCATCC-ATTCATATGTCCAG 164
consensus_15247#1 GGTATGGGAAGCCTCTCATCAGTCCACGATGATTACGGATCATCNCATTCATATGTCCAG 410
consensus_15247#0 G--ATGGGAAGCCTCTC-TCAGTCCA-GATGATTA-GGATCATCC-ATTCATATGTCCAG 399
consensus_15247#4 G--AGGGGAACCCTTTT-TCAGTCCA-AATGATTG-GGTTCCCCC-CTTTAAATGTCCAG 303
consensus_15247#2 GGGCACCTATAAAGATG---AGTGGA---TTACTGATGTCAGTGTCGAT-ACGTGGCAAC 302
consensus_15247#7 GGAGAATTAAAAAGATG---AGTGGA---TTACTGATGTCAGTGTCGAT-ACGTGGCAAC 75
consensus_15247#5 AGCAGA--AAGACGATG---AACC-----CTGTAGATTGCAGTTTTGCTCACACAGTCAC 275
* * * * * *
consensus_15247#3 CA-CAGTGTGAAAACAGTACTA----CATGTGATCGGCAAAATAATCGTGTTGTACCTGA 195
consensus_15247#6 CA-CAGTGTGAAAACAGTACTA----CATGTGATCGGCAAAATAATCGTGTTGTACCTGA 219
consensus_15247#1 CATCAGTGTGAAAACAGTACTA----CATGTGATCGGCAAAATAATCGTGTTGTACCTGA 466
consensus_15247#0 CA-CAGTGTGAAAACAGTACTA----CATGTGATCGGCAAAATAATCGTGTTGTACCTGA 454
consensus_15247#4 CC-CAGGGTGAAAACAGTACTA----CATGTGTTGGGCAAAAAAATGGGGTTGGCCCTGA 358
consensus_15247#2 CT--TGGGTGAATAGGCTGCTACTTTTGTCCGTTTGGAGCTTGAATTGTTGAATACTTTG 360
consensus_15247#7 CT--TGGGTGAATAGGCTGCTACTTTTGTCCGTTTGGAGCTTGAATTGTTGAATACTTTG 133
consensus_15247#5 AA--CGCTTGAA-ATTCTNCT--CTCTTTCTATTTGGTAATGGCTCTTTTAAAT-TATCG 329
* **** * * ** * * ** *
consensus_15247#3 ACTTACTTTCAACATAATGAAATTAATGCTGCAATTTTCAGCTTTGAGCTTGCAAGCAAA 255
consensus_15247#6 ACTTACTTTCAACATAATGAAATTAATGCTGCAAAAAAAAAAAAAAAAAAA--------- 270
consensus_15247#1 ACTTACTTTCAACATAATGAAATTAATGCTGCA-TTTTCAGCTTTGAGCTTGCAAGCAAA 525
consensus_15247#0 ACTTACTTTCAACATAATGAAATTAATGCTGCAATTTTCAGCTTTGAGCTTGCAAAAAAA 514
consensus_15247#4 ACTTCCTTTCCACAAAATGAAATT------------------------------------ 382
consensus_15247#2 TGCTTCTCCCAGCGTGGAATGTTGAAAAATGAAAACACACATAGCCCTCGTGGCGATTTG 420
consensus_15247#7 TGCTTCTCCCAGCGTGGAATGTTGAAAAATGAAAACACACATAGCCCTCGTGGCGATTTG 193
consensus_15247#5 GGATTNT---AAGGTACCGT----AAGAATTCNATTTCCCTTTTCTAC------------ 370
* *
consensus_15247#3 G--CGTGTGGATTGATTGGTAGCCTTAACCTATATCGTAAAATTGCTGGTGCCGATTGGT 313
consensus_15247#6 ------------------------------------------------------------
consensus_15247#1 G--CGT------------------------------------------------------ 529
consensus_15247#0 AGANGNNCGAGCGGGCGCGCCCCAAACAACACCCGAGCCGGCCCGGTGGCGCTAGCCGCT 574
consensus_15247#4 ------------------------------------------------------------
consensus_15247#2 ATCAGTGTCTGATGTCGCAGACCTTAAAGACGTTGATCGTTGAGCTTACGCTGCGATGAC 480
consensus_15247#7 ATCAAAAA---------------------------------------------------- 201
consensus_15247#5 ------------------------------------------------------------
consensus_15247#3 TCTGTGAAGATTTACACCAGCAGATTAGTTGTGGGCAACAT-TCTCTTGTGTGCAGCACT 372
consensus_15247#6 ------------------------------------------------------------
consensus_15247#1 ------------------------------------------------------------
consensus_15247#0 CATAGATCCATACTTTACGATAAGTGCAGTGCTTATTACATGTGACACGACAACTGTCCT 634
consensus_15247#4 ------------------------------------------------------------
consensus_15247#2 ATATGCTCAAAATTAATCAGAT-------------------------------------- 502
consensus_15247#7 ------------------------------------------------------------
consensus_15247#5 ------------------------------------------------------------
consensus_15247#3 ATCGTCAGTGGGCCACGCTTGCTTGAGCAAGCTGGTGAAGTCAGTACTGGGCTTGGGAAG 432
consensus_15247#6 ------------------------------------------------------------
consensus_15247#1 ------------------------------------------------------------
consensus_15247#0 ACACCTAATCCTGCACCATCCATTGCCTGGCGTAATCAAGTTCACATTCGCCTTGATTCC 694
consensus_15247#4 ------------------------------------------------------------
consensus_15247#2 ------------------------------------------------------------
consensus_15247#7 ------------------------------------------------------------
consensus_15247#5 ------------------------------------------------------------
consensus_15247#3 CAAAGCCTTG-------------------------------------------------- 442
consensus_15247#6 ------------------------------------------------------------
consensus_15247#1 ------------------------------------------------------------
consensus_15247#0 AAAGGCGAAGATTCCATCAANATGACAGCTACTCATCACTTCTCACTCACTTCGACATAC 754
consensus_15247#4 ------------------------------------------------------------
consensus_15247#2 ------------------------------------------------------------
consensus_15247#7 ------------------------------------------------------------
consensus_15247#5 ------------------------------------------------------------
consensus_15247#3 --------------------------------------------
consensus_15247#6 --------------------------------------------
consensus_15247#1 --------------------------------------------
consensus_15247#0 AAAAGTGCGCTCCTCCCATCACCTCGCGACTCCCATCACTCTCA 798
consensus_15247#4 --------------------------------------------
consensus_15247#2 --------------------------------------------
consensus_15247#7 --------------------------------------------
consensus_15247#5 --------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||