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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15260#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 20 consensus length = 1038 fasta sequence
[TCACATTCTCAAGAAGAGGAGAAGGAGAGATCTGGAGAAGAAGAGGTAGGAGGCCATTGCCACCTGACCTTCTCCTCTTCCTCCATTCATCTTCTCTTTCTTGGGACATGGCGACCATCCTGGAGAACATCCAGAAGGCGAGGTTCTTGCCGACAAGGCCGCTCAAGGACGAGCTGCCGACGTTCCAGGGCGGCGGCGGCGGCGGTGGCGGTGGGGGTGGAAAGGAGAGCCACCTGATGGGGCTGAGGAAGAGGCTGTCCTCCTTCTCCGACAAGATCCAGCCCATCTCCTCCGCGTCGGCGGAGTGGGCGTTCCGGCGGTCCAAGTCGGCGCCGTCGCTGGGCGCGTTCGCCGGCGGCCCGCTGAAGCGGTGGTGGGACTGGGGCGTCGGCTGGCTCATGTCCAAGAAGCCCGGGTTCGCCACCGACCTCGAGATGAACGAGGAGGAGGTGGCCGCCCTCGGCCGCGGCAGCAGGGGCAGCTGGGGCCACATCCTCTACAAGATGCGCTCCGGCGTCCGGCGGCTCGTCACCTCGCACTCGCTGCCCACCACGCACAGGGCGGCGGCGGCGGC-GTCGGCGTCGGCCCA-GTGCAAGCCGGCGGCCACGTT-CAACTACACCCAGAGCTTCCACAGCGGGCAAACCGCCATGGCGTACTGAGAGCTTCTCACATGTTCCTCCAGTGAGAAACATGACCTTTTC-TTGGTCGCCGTCTCCATGGGATCCAAATGAAGAAGAAGCTCAGGGAGATTGATATAATATATGGTGATGAAGATGCAACTACGATTACATGTAAAATTACACGGTAAATTTGATGAATGATG-AAAAAAAAATTGTAGCTCACTACGTGATCTGTTTTTTGTGTAGATCTAGTGTCCTGTAGAGGCCGAATGTATGTTCGTTCTTTCAATTC-TTTTTGGAGTTCGTTGGGCGATGTAAATGTCTCCGGTCAAATTCCTTATGCTTTTGCCTCC-TGCAG-TAAATAAAAAGCTAATGAAATATGGTGCTTGTTTAAAAAAAAAAAAAAAAAAAAAAAACT]
[+] EMBL AK059816 [TCACATTCTCAAGAAGAGGAGAAGGAGAGATCTGGAGAAGAAGAGGTAGGAGGCCATTGCCACCTGACCTTCTCCTCTTCCTCCATTCATCTTCTCTTTCTTGGGACATGGCGACCATCCTGGAGAACATCCAGAAGGCGAGGTTCTTGCCGACAAGGCCGCTCAAGGACGAGCTGCCGACGTTCCAGGGCGGCGGCGGCGGCGGTGGCGGTGGGGGTGGAAAGGAGAGCCACCTGATGGGGCTGAGGAAGAGGCTGTCCTCCTTCTCCGACAAGATCCAGCCCATCTCCTCCGCGTCGGCGGAGTGGGCGTTCCGGCGGTCCAAGTCGGCGCCGTCGCTGGGCGCGTTCGCCGGCGGCCCGCTGAAGCGGTGGTGGGACTGGGGCGTCGGCTGGCTCATGTCCAAGAAGCCCGGGTTCGCCACCGACCTCGAGATGAACGAGGAGGAGGTGGCCGCCCTCGGCCGCGGCAGCAGGGGCAGCTGGGGCCACATCCTCTACAAGATGCGCTCCGGCGTCCGGCGGCTCGTCACCTCGCACTCGCTGCCCACCACGCACAGGGCGGCGGCGGCGGC GTCGGCGTCGGCCCA GTGCAAGCCGGCGGCCACGTT CAACTACACCCAGAGCTTCCACAGCGGGCAAACCGCCATGGCGTACTGAGAGCTTCTCACATGTTCCTCCAGTGAGAAACATGACCTTTTC TTGGTCGCCGTCTCCATGGGATCCAAATGAAGAAGAAGCTCAGGGAGATTGATATAATATATGGTGATGAAGATGCAACTACGATTACATGTAAAATTACACGGTAAATTTGATGAATGATGAAAAAAAAAATTGTAGCTCACTACGTGATCTGTTTTTTGTGTAGATCTAGTGTCCTGTAGAGGCCGAATGTATGTTCGTTCTTTCAATTC TTTTTGGAGTTCGTTGGGCGATGTAAATGTCTCCGGTCAAATTCCTTATGCTTTTGCCTCC TGCAG TAAATAAAAAG ]
[+] EMBL OSS1389A [ TCTCAAGAAGAGGAGAAGGAGAGATCTGGAGAAGAAGAGGTAGGAGGCCATTGCCACCTGACCTTCTCCTCTTCCTCCATTCATCTTCTCTTTCTTGGGACATGGCGACCATCCTGGAGAACATCCAGAAGGCGAGGTTCTTGCCGACAAGGCCGCTCAAGGACGAGCTGCCGACGTTCCAGGGCGGCGGCGGCGGCG ]
[+] EMBL CB650393 [ AAGAAGAGGAGAAGGAGAGATCTGGAGAAGAAGAGGTAGGAGGCCATTGCCACCTGACCTTCTCCTCTTCCTCCATTCATCTTCTCTTTCTTGGGACATGGCGACCATCCTGGAGAACATCCAGAAGGCGAGGTTCTTGCCGACAAGGCCGCTCAAGGACGAGCTGCCGACGTTCCAGGGCGGCGGCGGCGGCGGTGGCGGTGGGGGTGGAAAGGAGAGCCACCTGATGGGGCTGAGGAAGAGGCTGTCCTCCTTCTCCGACAAGATCCAGCCCATCTCCTCCGCGTCGGCGGAGTGGGCGTTCCGGCGGTCCAAGTCGGCGCCGTCGCTGGGCGCGTTCGCCGGCGGCCCGCTGAAGCGGTGGTGGGACTGGGGCGTCGGCTGGCTCATGTCCAAGAAGCCCGGGTTCGCCACCGACCTCGAGATGAACGAGGAGGAGGTGGCCGCCCTCGGCCGCGGCAGCAGGGGCAGCTGGGGCCACATCCTCTACAAGATGCGCTCCGGCGTCCGGCGGCTCGTCACCTCGCACTCGCTGCCCACCACGCACAGGGCGGCGGCGGCGGC GTCGGCGTCGGCCCA GTGCAAGCCGGCGGCCACGTT CAACTACACCCAGAGCTTCCACAGCGGGCAAACCGCCATGGCGTACTGAGAGCTTCTCACATGTTCCTCCAGTGAGAAATATGACCTTTTC TTGGTCGCCGTCTCCATGGGATCCAAATGAAGAAGAAGCTCAGGGAGATTG ]
[+] EMBL CB655364 [ AGAAGACGAGAAGGAGAGATCTGGAGAAGAAGAGGTAGGAGGCCATTGCCACCTGACCTTCTCCTCTTCCTCCATTCATCTTCTCTTTCTTGGGACATGGCGACCATCCTGGAGAACATCCAGAAGGCGAGGTTCTTGCCGACAAGGCCGCTCAAGGACGAGCTGCCGACGTTCCAGGGCGGCGGCGGCGGCGGTGGCGGTGGGGGTGGAAAGGAGAGCCACCTGATGGGGCTGAGGAAGAGGCTGTCCTCCTTCTCCGACAAGATCCAGCCCATCTCCTCCGCGTCGGCGGAGTGGGCGTTCCGGCGGTCCAAGTCGGCGCCGTCGCTGGGCGCGTTCGCCGGCGGCCCGCTGAAGCGGTGGTGGGACTGGGGCGTCGGCTGGCTCATGTCCAAGAAGCCCGGGTTCGCCACCGACCTCGAGATGAACGAGGAGGAGGTGGCCGCCCTCGGCCGCGGCAGCAGGGGCAGCTGGGGCCACATCCTCTACAAGATGCGCTCCGGCGTCCGGCGGCTCGTCACCTCGCACTCGCTGCCCACCACGCACAGGGCGGCGGCGGCGGC GTCGGCGTCGGCCCA GTGCAAGCCGGCGGCCACGTT CAACTACACCCAGAGCTTCCACAGCGGGCAAACCGCCATGGCGTACTGAGAGCTTCTCACATGTTCCTCCAGTGAGAAACATGACCTTTTC TTGGTCG ]
[+] EMBL CA755025 [ AGGAGAAGGAGAGATCTGGAGAAGAAGAGGTAGGAGGCCATTGCCACCTGACCTTCTCCTCTTCCTCCATTCATCTTCTCTTTCTTGGGACATGGCGACCATCCTGGAGAACATCCAGAAGGCGAGGTTCTTGCCGACAAGGCCGCTCAAGGACGAGCTGCCGACGTTCCAGGGCGGCGGCGGCGGCGGTGGCGG GGGGGTGGAAAGGAGAGCCACCTGATGGGGCTGAGGAAGAGGCTGTCCTCCTTCTCCGACAAGATCCAGCCCATCTCCTCCGCGTCGGCGGAGTGGGCGTTCCGGCGGTCCAAGTCGGCGCCGTCGCTGGGCGCGTTCGCCGGCGGCCCGCTGAAGCGGTGGTGGGACTGGGGCGTCGGCTGGCTCATGTCCAAGAAGCCCGGGTTCGCCACCGACCTCGAGATGAACGAGGAGGAGGTGGCCGCCCTCGGCCGCGGCAGCAGGGGCAGCTGGGGCCACATCCTCTACAAGATGCGCTCCGGCGTCCGGCGGCTCGTCACCTCGCACTCGCTGCCCACCACGCACAGGGCGGCGGCGGCGGC GTCGGCGTCGGCCCA GTGCAAGCCGGCGGCCACGTTCCAACTACCCCCAGAGCT ]
[+] EMBL CB683332 [ GAGAACGAGAGATCTGGAGAAGAAGAGGTAGGAGGCCATTGCCACCTGACCTTCTCCTCTTCCTCCATTCATCTTCTCTTTCTTGGGACATGGCGACCATCCTGGAGAACATCCAGAAGGCGAGGTTCTTGCCGACAAGGCCGCTCAAGGACGAGCTGCCGACGTTCCAGGGCGGCGGCGGCGGCGGTGGCGGTGGGGGTGGAAAGGAGAGCCACCTGATGGGGCTGAGGAAGAGGCTGTCCTCCTTCTCCGACAAGATCCAGCCCATCTCCTCCGCGTCGGCGGAGTGGGCGTTCCGGCGGTCCAAGTCGGCGCCGTCGCTGGGCGCGTTCGCCGGCGGCCCGCTGAAGCGGTGGTGGGACTGGGGCGTCGGCTGGCTCATGTCCAAGAAGCCCGGGTTCGCCACCGACCTCGAGATGAACGAGGAGGAGGTGGCCGCCCTCGGCCGCGGCAGCAGGGGCAGCTGGGGCCACATCCTCTACAAGATGCGCTCCGGCGTCCGGCGGCTCGTCACCTCGCACTCGCTGCCCACCACGCACAGGGCGGCGGCGGCGGC GTCGGCGTCGGCCCA GTGCAAGCCGGCGGCCACGTT CAACTACACCCAGAGCTTCCACAGCGGGCAAACCGCCATGGCGTACTGAGAGCTTCTCACATGTTCCTCCAGTGAGAAACATGACCTTTTC TTGGTCGCCGTCTCCATGGGATCCAAATGAAGAAGAAGCTCAGGGAGATTGATATAATATATGGTGATGAAGATGCAACTACGAATACATGTAAAATTACACG ]
[+] EMBL OSC8371 [ GAGAAGGAGAGATCTGGAGAAGAAGAGGTAGGAGGCCATTGCCACCTGACCTTCTCCTCTTCCTCCATTCATCTTCTCTTTCTTGGGACATGGCGACCATCCTGGAGAACATCCAGAAGGCGAGGTTCTTGNCGACAAGGNCGGTCAAGGACGAGCTGNCGACGTTCCAGGGCGGC ]
[+] EMBL AK069489 [ AGGAGAGATCTGGAGAAGAAGAGGTAGGAGGCCATTGCCACCTGACCTTCTCCTCTTCCTCCATTCATCTTCTCTTTCTTGGGACATGGCGACCATCCTGGAGAACATCCAGAAGGCGAGGTTCTTGCCGACAAGGCCGCTCAAGGACGAGCTGCCGACGTTCCAGGGCGGCGGCGGCGGCGGTGGCGGTGGGGGTGGAAAGGAGAGCCACCTGATGGGGCTGAGGAAGAGGCTGTCCTCCTTCTCCGACAAGATCCAGCCCATCTCCTCCGCGTCGGCGGGGTGGGCGTTCCGGCGGTCCAAGTCGGCGCCGTCGCTGGGCGCGTTCGCCGGCGGCCCGCTGAAGCGGTGGTGGGACTGGGGCGTCGGCTGGCTCATGTCCAAGAAGCCCGGGTTCGCCACCGACCTCGAGATGAACGAGGAGGAGGTGGCCGCCCTCGGCCGCGGCAGCAGGGGCAGCTGGGGCCACATCCTCTACAAGATGCGCTCCGGCGTCCGGCGGCTCGTCACCTCGCACTCGCTGCCCACCACGCACAGGGCGGCGGCGGCGGC GTCGGCGTCGGCCCA GTGCAAGCCGGCGGCCACGTT CAACTACACCCAGAGCTTCCACAGCGGGCAAACCGCCATGGCGTACTGAGAGCTTCTCACATGTTCCTCCAGTGAGAAACATGACCTTTTC TTGGTCGCCGTCTCCATGGGATCCAAATGAAGAAGAAGCTCAGGGAGATTGATATAATATATGGTGATGAAGATGCAACTACGATTACATGTAAAATTACACGGTAAATTTGATGAATGATG AAAAAAAAATTGTAGCTCACTACGTGATCTGTTTTTTGTGTAGATCTAGTGTCCTGTAGAGGCCGAATGTATGTTCGTTCTTTCAATTC TTTTTGGAGTTCGTTGGGCGATGTAAATGTCTCCGGTCAAATTCCTTATGCTTTTGCCTCC TGCAG TAAATAAAAAGCTAATGAA ]
[+] EMBL OSS3417A [ GGTAGGAGGCCATTGCCACCTGACCTTCTCCTCTTCCTCCATTCATCTTCTCTTTCTTGGGACATGGCGACCATCCTGGAGAACATCCAGAAGGCGAGGTTCTTGCCGACAAGGACGCTCAAGGACGAGCTGCCGACGTTCCAGGGCGGCGGCGGCGGCGGTGGCGNTGGGGGTGGAAAGGAGAGCCACCTGATGGGGCTGAGGAAGAGGCTNTCCTCCTTCTCCGACAAGATCCAGCCCATCTCCTCCGCGTCGNCGGAGTGGGCGTTCCGGCGGTCCAAGTCGNCGCCGTCGCTG ]
[+] EMBL OSS2526A [ GGTAGGAGGCCATTGCCACCTGACCTTCTCCTCTTCCTCCATTCATCTTCTCTTTCTTGGGACATGGCGACCATCCTGGAGAACATCCAGAAGGCGAGGTTCTTGCCGACAA GNCGCTCAAGGACGAGCTGCCGACGTTCCAGGGCGGCGGCGGCGGCGGTGGCGGTGGGGGTGGAAAGGAGAGCCACCTGATGGGGCTGAGGAAGAGGCTGTCCTCCTTCTCCGACAAGATCCAGCCCATCTCCTCCGCGTCGGCGGAGTGGGCGTTCCGGCGGTCCAAGTCGGCGCCGTCGGTG ]
[+] EMBL AU077900 [ GGTAGGAGGCCATTGCCACCTGACCTTCTCCTCTTCCTCCATTCATCTTCTCTTTCTTGGGACATGGCGACCATCCTGGAGAACATCCAGAAGGCGAGGTTCTTGCCGACAAGGCCGCTCAAGGACGAGCTGCCGACGTTCCAGGGCGGCGGCGGCGGCGGTGGCGGTNGGGGTGGAAAGGAGAGCCACCTGATGGGGCTGAGGAAGAGGCTGTCCTCCTTCTCCGACAAGATCCAGCCCATCTCCTCCGCGTCGGCGGAGTGGGCGTTCCGGCGGTCCAAGTCGGCGCCGTCGCTGGGCGCGTTCGCCGGCGGCCCGCTGAANC GTGGTGGGACTTGGGCGTCGGCTGGCTCATG ]
[+] EMBL OSS3346A [ GGTAGGAGGCCATTGCCACCTGACCTTCTCCTCTTCCTCCATTCATCTTCTCTTTCTTGGGACATGGCGACCATCCTGGAGAACATCCAGAAGGCGAGGTTCTTGCCGACAAGGCCGCTCAAGGACGAGCTGCCGACGTTCCAGGGCGGCGGCGNCGGCGGTGGCGGTGGGGGTGGAAAGGAGAGCCACCTGATGGGGCTGAGGAAGAGGCTGTCCTCCTTCTCCGACAAGATCCAGCCCATCTCCTCCGCGTCGGCGGAGTGGGCGTTCCGGCGGTCCAAGTTGGCGNCGTCGNTGGGCGCG ]
[-] EMBL CB650394 [ GCTGAAGCGGTGGTGGGACTGGGGCGTCGGCTGGCTCATGTCCAAGAAGCCCGGGTTCGCCCCCGACCTCGAGATGAACGAGGAGGAGGTGGCCGCCCTCGGCCGCGGCAGCAGGGGCAGCTGGGGCCACATCCTTTACAAGATGCGGTCCGGCGTCCGGCGGCTTGTCACCTTGCACTTGCTGCCCCCCACGCACAGGGCGGCGGCGGCGGC GTTGGCGTCGGCCCA GTGCAAGCCGGCGGCCACGTT CAACTACACCCAGAGCTTCCACAGCGGGCAAACCGCCATGGCGTACTGAGAGCTTTTCACATGTTCCTCCAGTGAGAAATATGACCTTTTT TTGGTCGCCGTCTCCATGGGATCCAAATGAAGAAGAAGCTCAGGGAGATTGATATAATATATGGTGATGAAGATGCAACTTCGATTACATGTAAAATTACCCGGTAAATTTGATGAATGATG AAAAAAAAATTGTAGCTCCCTACGTGATCTGTTTTTTGTGTAGATCTAGTGTCCTGTAGAGGCCGAATGTATGTTCGTTCTTTCAATTC TTTTTGGAGTTCGTTGGGCGATGTAAATGTCTCCGGTCAAATTCCTTATGCTTTTGCCTCC TGCAG GGAATAAAAAGCTAATGAAATATGGTGCTTGTTTA ]
[+] EMBL AU077901 [ caAAGAAGCCCGGGTTCGCCACCGACCTCGAGATGAACGAGGAGGAGGTGGCCGCCCTCGGCCGCGGCAGCANGGGCAGCTGGGGCCACATCCTCTACAAGATGCGCTCCGGCGTCCGGCGGCTCGTCACCTCGCACTCGCTGCCCACCACGCACAGGGCGGCGGCGGCGGC GTCGGCGTCGGCCCA GTGCAAGCCGGCGGCCACGTT CAACTACACCCAGAGCTTCCACAGCGGGCAAACCGCCATGGCGTACTGAGAGCTTCTCACATGTNCCTCCAGTGAGAAACATGACCTTTTC TTGGTCGCCGTCTCCATGGGATCCAAATGAAGAAGAAGCTCAGGGAGATTGATATAATATATGGTGATGAAGATGCAACTACGATTACATGTAAAATTACACGGTAAATTTGATGAATGATG AAAAAAAAATTGTAGCT A TACGTGATCTGTTTTTTGTGTAGATCTAGTGTCCTGTAGAGGCCGAATGTATGTTCGTTCTTTCAATTC TTTTTGGAGTTCGTTGGGCGATGTAAATGTCTCCGGTCAAATTCCTTATGCTTTTGCCTCC TGCAG TAAATAAAAAGCTAATGAAATATGGTGCTTGTTTAAAAA ]
[+] EMBL BI805453 [ CGGCTGTCGGCGTC GCCCAGGTGCAATCC GCTGCCACGTT CNACTACACCCAGAGCTTCCACAGCGGGC AACCGCCATGGCGTACTGAGAGCTTCTCACATGTTCCTCCAGTGAGAAACATGACCTTTTC TTGGTC CCGTCTCCATGGGATCC AATGAAGAAGAAGCTCAGGGAGATTGATATAATATATGGTGATGAAGATGCAACTACGATTACATGTAAAATTACACGGTAAATTTGATGAATGATG AAAAAAAAATTGTAGCTCACTACGTGATCNGTTTTTTGTGTAGATCTAGTGTCCTGTAGAGGCCGAATGTATGTTCGTTCTTTCAATTC TTTTTGGAGTTCGTTGGGCGATGTAAATGTCTCCGGTCAAATTCCTTATGCTTTTGCCTCCNCCCAGCTAAATAAAAAGCTAATGAAATATGGTGCTTGTTTAAAAAA ]
[+] EMBL AU174258 [ GGCCCA GTGCAAGCCGGCGGCCACGTT CAACTACACCCAGAGCTTCCACAGCGGGCAAACCGCCATGGCGTACTGAGAGCTTNTCACATGTTCCTCCAGTGAGAAACATGACCTTTTN TTGGTCGCCGTCTCCATGGGATCCAAATGAAGAAGAAGCTCAGGGAGATTGATATAATATATGGTGATGAAGATGCAACTACGATTACATGTAAAATTACNCGGTAAATTTGATGAATGATG AAAAAAAAATTGTAGCTCACTACGTGATCTGTTTTTTGTGTAGATCTAGTGTCCTGTAGAGGCCGAATGTATGTTCGTTCTTTCAATTC TTTTTGGAGTTCGTTGGGCGATGTAAATGTCTCCGGTCAAATTCCTTATGCTTTTGCCTCC TGCAG TAAATAAAAAGCTAATGAAATATGGTGCTTGTTTAAAAA ]
[+] EMBL AU091935 [ ACGTT CAACTACACCCAGAGCTTCCACAGC GGCAAACCGCCATGGCGTACTGAGAGCTTCTCACATGTTCCTCCAGTGAGAANCATGNCCTTTTCTTTGGTCGCCGTCTCCATGGGATCCAAATGAAGAAGAAGCTCA GGAGATTGATATAATATATGGTGATGAAGATGCAACTACGATTACATGTAAAATTACACGGTAAATTTGATGAATGATG AAAAAAAAATTGTAGCTCACTACGTGATCTGTTTTTTGTGTAGATCTAGTGTCCTGTAGAGGCCGAATGTATGTTCGTTCTTTCAATTC TTTTTGGAGTTCGTTGGGCGATGTAAATGTCTCCGGTCAAATTCCTTATGCTTTTGCCTCC TGCAG TAAATAAAAAGCTAATGAAATATGGTGCTTGTTTAAAAAAA ]
[+] EMBL C74314 [ ACGTT CAACTACACCCAGAGCTTCCACAGCGGGCAAACCGCCATGGCGTACTGAGAGCTTCTCACATGTTCCTCCAGTGAGAAACATGACCTTTTC TTGGTCGCCGTCTCCATGGGATCCAAATGAAGAAGAAGCTCAGGGAGATTGATATAATATATGGTGATGAAGATGCAACTACGATTACATGTNAAATTACACGGTAAATTTGATGAATGATG AAAAAAAAATTGTAGCTCACTACGTGATCTGTTTTTTGTGTAGATCTAGTGTCCTGTAGAGGCCGAATGTATGTTCGTTCTTTCAATTCTTTTTTGGAGTNCGTTGGGCGATGTAAATGTCTCCGGTCAAATTCCTTAAGCTTT ]
[-] EMBL CA758263 [ TATAATATATGGTGATGAAGATGCAACTACGATTACATGTAAAATTACACGGTAAATTTGATGAATGATG AAAAAAAAATTGTAGCTCACTACGTGATCTGTTTTTTGTGTAGATCTAGTGTCCTGTAGAGGCCGAATGTATGTTCGTTCTTTCAATTC TTTTTGGAGTTCGTTGGGCGATGTAAATGTCTCCGGTCAAATTCCTTATGCTTTTGCCTCC TGCAG TAAATAAAAAGCTAATGAAATATGGTGCTTGTTTAAAAAAAAAAAAAAAAAAAAAAAACT]
[+] EMBL AU097277 [ TAGTGTCCTGTAGAGGCCGAATGTATGTTCGTTCTTTCAATTC TTTTTGGAGTTCGTTGGGCGATGTAAATGTCTCCGGTCAAATTCCTTATGCTTTTGCCTCC TGCAG TAAATAAAAAGCTAATGAAATATGGTGCTTGTTTAA ]
consensusID : consensus_15260#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 306 fasta sequence
[CTGAGAGCTTCTCACATGTTCCTCCCAGTGAGAAACATGACCTTTTCTTGGTCGCCGTTACGTGATCTGTTTTTTGTGTAGATCTAGTGTCCTGTAGAGGCCGAATGTATGTTCGTTCTTTCAATTCTTTTTGGAGTTCGTTGGGCGATGTAAATGTCTCCGGTCAAATTCCTTATGCTTTTGCCTCCATGATCATTTTAGCATCTTTGAGTAGTTACATGTGTTTGGTGTATGAAGATCAAGAATAGCTGGTGAATCTAACAATTAATCTCACAAAAAAAGGGAGATTACAGGTGAGGTGTCACG]
[-] EMBL C73059 [CTGAGAGCTTCTCACATGTTCCTCCCAGTGAGAAACATGACCTTTTCTTGGTCGCCGTTACGTGATCTGTTTTTTGTGTAGATCTAGTGTCCTGTAGAGGCCGAATGTATGTTCGTTCTTTCAATTCTTTTTGGAGTTCGTTGGGCGATGTAAATGTCTCCGGTCAAATTCCTTATGCTTTTGCCTCCATGATCATTTTAGCATCTTTGAGTAGTTACATGTGTTTGGTGTATGAAGATCAAGAATAGCTGGTGAATCTAACAATTAATCTCACAAAAAAAGGGAGATTACAGGTGAGGTGTCACG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15260#0 TCACATTCTCAAGAAGAGGAGAAGGAGAGATCTGGAGAAGAAGAGGTAGGAGGCCATTGC 60
consensus_15260#1 ------------------------------------------------------------
consensus_15260#0 CACCTGACCTTCTCCTCTTCCTCCATTCATCTTCTCTTTCTTGGGACATGGCGACCATCC 120
consensus_15260#1 ------------------------------------------------------------
consensus_15260#0 TGGAGAACATCCAGAAGGCGAGGTTCTTGCCGACAAGGCCGCTCAAGGACGAGCTGCCGA 180
consensus_15260#1 ------------------------------------------------------------
consensus_15260#0 CGTTCCAGGGCGGCGGCGGCGGCGGTGGCGGTGGGGGTGGAAAGGAGAGCCACCTGATGG 240
consensus_15260#1 ------------------------------------------------------------
consensus_15260#0 GGCTGAGGAAGAGGCTGTCCTCCTTCTCCGACAAGATCCAGCCCATCTCCTCCGCGTCGG 300
consensus_15260#1 ------------------------------------------------------------
consensus_15260#0 CGGAGTGGGCGTTCCGGCGGTCCAAGTCGGCGCCGTCGCTGGGCGCGTTCGCCGGCGGCC 360
consensus_15260#1 ------------------------------------------------------------
consensus_15260#0 CGCTGAAGCGGTGGTGGGACTGGGGCGTCGGCTGGCTCATGTCCAAGAAGCCCGGGTTCG 420
consensus_15260#1 ------------------------------------------------------------
consensus_15260#0 CCACCGACCTCGAGATGAACGAGGAGGAGGTGGCCGCCCTCGGCCGCGGCAGCAGGGGCA 480
consensus_15260#1 ------------------------------------------------------------
consensus_15260#0 GCTGGGGCCACATCCTCTACAAGATGCGCTCCGGCGTCCGGCGGCTCGTCACCTCGCACT 540
consensus_15260#1 ------------------------------------------------------------
consensus_15260#0 CGCTGCCCACCACGCACAGGGCGGCGGCGGCGGCGTCGGCGTCGGCCCAGTGCAAGCCGG 600
consensus_15260#1 ------------------------------------------------------------
consensus_15260#0 CGGCCACGTTCAACTACACCCAGAGCTTCCACAGCGGGCAAACCGCCATGGCGTACTGAG 660
consensus_15260#1 ------------------------------------------------------------
consensus_15260#0 AGCTTCTCACATGTTCCTCCAGTGAGAAACATGACCTTTTCTTGGTCGCCGTCTCCATGG 720
consensus_15260#1 ------------------------------------------------------------
consensus_15260#0 GATCCAAATGAAGAAGAAGCTCAGGGAGATTGATATAATATATGGTGATGAAGATGCAAC 780
consensus_15260#1 ------------------------------------------------------------
consensus_15260#0 TACGATTACATGTAAAATTACACGGTAAATTTGATGAATGATGAAAAAAAAATTGTAGCT 840
consensus_15260#1 -CTGAGAGCTTCTCACATGTTCCTCCCAGTGAGAAACATGACCTTTTCTTGGTCGC---- 55
** * * * * ** * * * ** **** * *
consensus_15260#0 CACTACGTGATCTGTTTTTTGTGTAGATCTAGTGTCCTGTAGAGGCCGAATGTATGTTCG 900
consensus_15260#1 CGTTACGTGATCTGTTTTTTGTGTAGATCTAGTGTCCTGTAGAGGCCGAATGTATGTTCG 115
* *********************************************************
consensus_15260#0 TTCTTTCAATTCTTTTTGGAGTTCGTTGGGCGATGTAAATGTCTCCGGTCAAATTCCTTA 960
consensus_15260#1 TTCTTTCAATTCTTTTTGGAGTTCGTTGGGCGATGTAAATGTCTCCGGTCAAATTCCTTA 175
************************************************************
consensus_15260#0 TGCTTTTGCCTCCTGCAGTAAATAAAAAGCT------AATGAAATATGGTGCTTGTTTAA 1014
consensus_15260#1 TGCTTTTGCCTCCATGATCATTTTAGCATCTTTGAGTAGTTACATGTGTTTGGTGTATGA 235
************* * * * * * ** * * * ** ** * *** * *
consensus_15260#0 AAAAAAAAAAAAAAAAAAAAAACT------------------------------------ 1038
consensus_15260#1 AGATCAAGAATAGCTGGTGAATCTAACAATTAATCTCACAAAAAAAGGGAGATTACAGGT 295
* * ** ** * ** **
consensus_15260#0 -----------
consensus_15260#1 GAGGTGTCACG 306
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||