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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15265#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 1532 fasta sequence
[AGTTGTAGTAGCACTTAAGCCTTCCTCTCTAGCTAGCATCTCTTGTGTCAGGAAGTTGGAAGGGATTTCTGGCTAGTTTCTAGCTGGTGTCTCCTCTCCTCTTCCTAACCTTCTCACTGATTAACACCTTAGAGTTAGTTAATAACCTTCATCACCAGTAGCAATGGCAGGAGGTTTCTTGTCCATGGCTAACCCGGCGGTCACCCTCTCCGGTGTTGCAGGAAACATCATCTCCTTCCTGGTGTTCCTTGCACCAGTGGCGACGTTCTTGCAGGTGTACAAGAAGAAGTCGACGGGAGGGTACAGCTCGGTGCCGTACGTGGTGGCGCTCTTCAGCTCGGTGCTGTGGATCTTCTACGCGCTGGTGAAGACCAACTCGAGGCCGCTGCTGACCATCAACGCCTTCGGC-TGCGGCGTCGAGGCCGCC-TAC-ATCGTCC-TCTA-CCTCGTCTACGCGCC-GCGCCG-CGCCA--GGC-TCCGCA-CCCTC-GCC-TTC-TTCCT-CCTCC-TCGA--CGTC-GCC-GCC-TTC-GCCCTCATCGTCGTCACCACCCTCTACCTCGTCCCCAAGCCCCACCAGGTCAAGTTCCTCGGCAGCGTCTGCCTCGCCTTCTCCATGGCCGTCTTCGTCGCCCCTCTCTCCATCATCTTCAAGGTGATCAAGACCAAGAGCGTCGAGTTCATGCCGATCGGGCTCTCCGTCTGCCTCACGCTCAGCGCCGTCGCGTGGTTCTGCTACGGCCTCTTCACCAAGGACCCCTACGTCATGTACCCGAACGTGGGCGGCTTCTTCTTCAGCTGCGTGCAGATGGGGCTCTACTTCTGGTACCGGAAGCCGAGGAACACGGCCGTGCTGCCGACGACGT-CCGACTCCATGT-CCCCGATTTCCG-CCGCCG-CCGCCGCCACGCAGAGGGTGATCGAGCT-CCCCGCCGGCACGCACGCCTTCACCATCCTGTCCGTGAGCCCCATCCCGA-TCCTCGGCGTGCACAAGGTCGAGGTGGTGGCCGCCGAGCAGGCGGC-CGACGGCGTCGCCGCCGCCGCCGCCGCCGACAAGGAGCTGCTGCAGAACAAGCCGGAGGTGATCGAGATCACCGCCGCCGTGTGACGACGACTGATCTCGACGACGACAGATTCTCGCTACTGATGAAGAAGACGACGACGATGGCCGGAT-CGATGACGGACAGAATTTAG-CAGTGTGGATTACTACCGAACTTTAATTAGTTGGTTAATTATTGGATTACAATG-TGGTAAGAGTGTGTCATTAGCAGCTAGTTAACTTACTTAAATTAATTATCTTGTTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGCTTTGAGTGAGTGAGTGAGTGATCTCGACGTAGTTTGCTGGTTGGTGTAATAAGAAAAAGGCGATCTACTAGTAGTCTACTAGCTAGTACGCATGCATGTGTGTGTGCTCTACTTACCGTGTTGCAATCTCATCTCTTTGTACTTACAACTCAGAAATCAATGGAAGATTGTGACAGGTATTATTAGTAAAAAAAAAAAAAGAAAAAAAAAAAAAGGAA]
[+] EMBL AK070510 [AGTTGTAGTAGCACTTAAGCCTTCCTCTCTAGCTAGCATCTCTTGTGTCAGGAAGTTGGAAGGGATTTCTGGCTAGTTTCTAGCTGGTGTCTCCTCTCCTCTTCCTAACCTTCTCACTGATTAACACCTTAGAGTTAGTTAATAACCTTCATCACCAGTAGCAATGGCAGGAGGTTTCTTGTCCATGGCTAACCCGGCGGTCACCCTCTCCGGTGTTGCAGGAAACATCATCTCCTTCCTGGTGTTCCTTGCACCAGTGGCGACGTTCTTGCAGGTGTACAAGAAGAAGTCGACGGGAGGGTACAGCTCGGTGCCGTACGTGGTGGCGCTCTTCAGCTCGGTGCTGTGGATCTTCTACGCGCTGGTGAAGACCAACTCGAGGCCGCTGCTGACCATCAACGCCTTCGGC TGCGGCGTCGAGGCCGCC TAC ATCGTCC TCTA CCTCGTCTACGCGCC GCGCCG CGCCA GGC TCCGCA CCCTC GCC TTC TTCCT CCTCC TCGA CGTC GCC GCC TTC GCCCTCATCGTCGTCACCACCCTCTACCTCGTCCCCAAGCCCCACCAGGTCAAGTTCCTCGGCAGCGTCTGCCTCGCCTTCTCCATGGCCGTCTTCGTCGTCCCTCTCTCCATCATCTTCAAGGTGATCAAGACCAAGAGCGTCGAGTTCATGCCGATCGGGCTCTCCGTCTGCCTCACGCTCAGCGCCGTCGCGTGGTTCTGCTACGGCCTCTTCACCAAGGACCCCTACGTCATGTACCCGAACGTGGGCGGCTTCTTCTTCAGCTGCGTGCAGATGGGGCTCTACTTCTGGTACCGGAAGCCGAGGAACACGGCCGTGCTGCCGACGACGT CCGACTCCATGT CCCCGATCTCCG CCGCCG CCGCCGCCACGCAGAGGGTGATCGAGCT CCCCGCCGGCACGCACGCCTTCACCATCCTGTCCGTGAGCCCCATCCCGA TCCTCGGCGTGCACAAGGTCGAGGTGGTGGCCGCCGAGCAGGCGGC CGACGGCGTCGCCGCCGCCGCCGCCGCCGACAAGGAGCTGCTGCAGAACAAGCCGGAGGTGATCGAGATCACCGCCGCCGTGTGACGACGACTGATCTCGACGACGACAGATTCTCGCTACTGATGAAGAAGACGACGACGATGGCCGGAT CGATGACGGACAGAATTTAG CAGTGTGGATTACTACCGAACTTTAATTAGTTGGTTAATTATTGGATTACAATG TGGTAAGAGTGTGTCATTAGCAGCTAGTTAACTTACTTAAATTAATTATCTTGTTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGCTTTGAGTGAGTGAGTGAGTGATCTCGACGTAGTTTGCTGGTTGGTGTAATAAGAAAAAGGCGATCTACTAGTAGTCTACTAGCTAGTACGCATGCATGTGTGTGTGCTCTACTTACCGTGTTGCAATCTCATCTCTTTGTACTTACAACTCAGAAATCAATGGAAGATTGTGACAGGTATTATT ]
[+] EMBL AK106127 [ GTTGTAGTAGCACTTAAGCCTTCCTCTCTAGCTAGCATCTCTTGTGTCAGGAAGTTGGAAGGGATTTCTGGCTAGTTTCTAGCTGGTGTCTCCTCTCCTCTTCCTAACCTTCTCACTGATTAACACCTTAGAGTTAGTTAATAACCTTCATCACCAGTAGCAATGGCAGGAGGTTTCTTGTCCATGGCTAACCCGGCGGTCACCCTCTCCGGTGTTGCAGGAAACATCATCTCCTTCCTGGTGTTCCTTGCACCAGTGGCGACGTTCTTGCAGGTGTACAAGAAGAAGTCGACGGGAGGGTACAGCTCGGTGCCGTACGTGGTGGCGCTCTTCAGCTCGGTGCTGTGGATCTTCTACGCGCTGGTGAAGACCAACTCGAGGCCGCTGCTGACCATCAACGCCTTCGGC TGCGGCGTCGAGGCCGCC TAC ATCGTCC TCTA CCTCGTCTACGCGCC GCGCCG CGCCA GGC TCCGCA CCCTC GCC TTC TTCCT CCTCC TCGA CGTC GCC GCC TTC GCCCTCATCGTCGTCACCACCCTCTACCTCGTCCCCAAGCCCCACCAGGTCAAGTTCCTCGGCAGCGTCTGCCTCGCCTTCTCCATGGCCGTCTTCGTCGCCCCTCTCTCCATCATCTTCAAGGTGATCAAGACCAAGAGCGTCGAGTTCATGCCGATCGGGCTCTCCGTCTGCCTCACGCTCAGCGCCGTCGCGTGGTTCTGCTACGGCCTCTTCACCAAGGACCCCTACGTCATGTACCCGAACGTGGGCGGCTTCTTCTTCAGCTGCGTGCAGATGGGGCTCTACTTCTGGTACCGGAAGCCGAGGAACACGGCCGTGCTGCCGACGACGT CCGACTCCATGT CCCCGATCTCCG CCGCCG CCGCCGCCACGCAGAGGGTGATCGAGCT CCCCGCCGGCACGCACGCCTTCACCATCCTGTCCGTGAGCCCCATCCCGA TCCTCGGCGTGCACAAGGTCGAGGTGGTGGCCGCCGAGCAGGCGGC CGACGGCGTCGCCGCCGCCGCCGCCGCCGACAAGGAGCTGCTGCAGAACAAGCCGGAGGTGATCGAGATCACCGCCGCCGTGTGACGACGACTGATCTCGACGACGACAGATTCTCGCTACTGATGAAGAAGACGACGACGATGGCCGGAT CGATGACGGACAGAATTTAG CAGTGTGGATTACTACCGAACTTTAATTAGTTGGTTAATTATTGGATTACAATG TGGTAAGAGTGTGTCATTAGCAGCTAGTTAACTTACTTAAATTAATTATCTTGTTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGCTTTGAGTGAGTGAGTGAGTGATCTCGACGTAGTTTGCTGGTTGGTGTAATAAGAAAAAGGCGATCTACTAGTAGTCTACTAGCTAGTACGCATGCATGTGTGTGTGCTCTACTTACCGTGTTGCAATCTCATCTCTTTGTACTTACAACTCAGAAATCAATGGAAGAT ]
[+] EMBL CB645462 [ AACCCTTCCTCTCTAGCTAGCATCTCTTGTGTCAGGAAGTTGGAAGGGATTTCTGGCTAGTTTCTAGCTGGTGTCTCCTCTCCTCTTCCTAACCTTCTCACTGATTAACACCTTAGAGTTAGTTAATAACCTTCATCACCAGTAGCAATGGCAGGAGGTTTCTTGTCCATGGCTAACCCGGCGGTCACCCTCTCCGGTGTTGCAGGAAACATCATCTCCTTCCTGGTGTTCCTTGCACCAGTGGCGACGTTCTTGCAGGTGTACAAGAAGAAGTCGACGGGAGGGTACAGCTCGGTGCCGTACGTGGTGGCGCTCTTCAGCTCGGTGCTGTGGATCTTCTACGCGCTGGTGAAGACCAACTCGAGGCCGCTGCTGACCATCAACGCCTTCGGC TGCGGCGTCGAGGCCGCC TAC ATCGTCC TCTA CCTCGTCTACGCGCC GCGCCG CGCCA GGC TCCGCA CCCTC GCC TTC TTCCT CCTCC TCGA CGTC GCC GCC TTC GCCCTCATCGTCGTCACCACCCTCTACCTCGTCCCCAAGCCCCACCAGGTCAAGTTCCTCGGCAGCGTCTGCCTCGCCTTCTCCATGGCCGTCTTCGTCGCCCCTCTCTCCATCATCTTCAAGGTGATCAAGACCAAGAGCGTCGAGTTCATGCCGATCGGGCTCTCCGTCTGCCTCACGCTCAGCGCCGTCGCGTGGTTCTGCTACGGCCTCTTCACCAAGGACCCCTACGTCATGTACCCGAACGTGGG ]
[+] EMBL AU063762 [ GCCTTCCTCTCTAGCTAGCATCTCTTGTGTCAGGAAGTTGGAAGGGATTTCTGGCTAGTTTCTAGCTGGTGTCTCCTCTCCTCTTCCTAACCTTCTCACTGATTAACACCTTAGAGTTAGTTAATAACCTTCATCACCAGTAGCAATGGCAGGAGGTTTCTTGTCCATGGCTAACCCGGCGGTCACCCTCTCCGGTGTTGCAGGAAACATCATCTCCTTCCTGGTGTTCCTTGCACCAGTGGCGACGTTCTTGCAGGTGTACAAGAAGAAGTCGACGGGAGGGTACAGCTCGGTGCCGTACGTGGTGGCGCTCTTCAGCTCGGTGCTGTGGATCTTCTACGCGCTGGTGAAGACCAACTCGAGGCCGCTGCTGACCATCAACGCCTTCGGC TGCGGCGTCGAGGCC ]
[+] EMBL OSS12378A [ GCCTTCCTCTCTAGCTAGCATCTCTTGTGTCAGGAAGTTGGAAGGGATTTCTGGCTAGTTTCTAGCTGGTGTCTCCTCTCCTCTTCCTAACCTTCTCACTGATTAACACCTTAGAGTTAGTTAATAACCTTCATCACCAGTAGCAATGGCAGGAGGTTTCTTGTCCATGGCTAACCCGGCGGTCACCCTCTCCGGTGTTGCAGGAAACATCATCTCCTTCCTGGTGTTCCTTGCACCAGTGGCGACGTTCTTGCAGGTGTACAAGAAGAAGTCGACGGGAGGGTACAGCTCGGTGCCGTACGTGGTGGCGCTCTTCAGCTCGGTGCTGTGGATCTTCTACGCGCTGGTGAAGACCAACTCGAGGCCGCTGCTGACCATCAACGGCTTCGGC TGCGGCGTC ]
[+] EMBL CB657176 [ TCCTCTCTAGCTAGCATCTCTTGTGTCAGGAAGTTGGAAGGGATTTCTGGCTAGTTTCTAGCTGGTGTCTCCTCTCCTCTTCCTAACCTTCTCACTGATTAACACCTTAGAGTTAGTTAATAACCTTCATCACCAGTAGCAATGGCAGGAGGTTTCTTGTCCATGGCTAACCCGGCGGTCACCCTCTCCGGTGTTGCAGGAAACATCATCTCCTTCCTGGTGTTCCTTGCACCAGTGGCGACGTTCTTGCAGGTGTACAAGAAGAAGTCGACGGGAGGGTACAGCTCGGTGCCGTACGTGGTGGCGCTCTTCAGCTCGGTGCTGTGGATCTTCTACGCGCTGGTGAAGACCAACTCGAGGCCGCTGCTGACCATCAACGCCTTCGGC TGCGGCGTCGAGGCCGCC TAC ATCGTCC TCTA CCTCGTCTACGCGCC GCGCCG CGCCA GGC TCCGCA CCCTC GCC TTC TTCCT CCTCC TCGA CGTC GCC GCC TTC GCCCTCATCGTCGTCACCACCCTCTACCTCGTCCCCAAGCCCCACCAGGTCAAGTTCCTCGGCAGCGTCTGCCTCGCCTTCTCCATGGCCGTCTTCGTCGCCCCTCTCTCCATCATCTTCAAGGTGATCAAGACCAAGAGCGTCGAGTTCATGCCGATCGGGCTCTCCGTCTGCCTCACGCTCAGCGCCGTCGCGTGGTTCTGCTACGGCCTCTTCACCAAGGACCCCTACGTCATGTACCCGAACGTGGGCGGCTTCTTCTTCAGCTGCGTGCAGATGGGGCTCTACT ]
[+] EMBL BQ164722 [ TAGCTAGCATCTCTTGTGTCAGGAAGTTGGAAGGGATTTCTGGCTAGTTTCTAGCTGGTGTCTCCTCTCCTCTTCCTAACCTTCTCACTGATTAACACCTTAGAGTTAGTTAATAACCTTCATCACCAGTAGCAATGGCAGGAGGTTTCTTGTCCATGGCTAACCCGGCGGTCACCCTCTCCGGTGTTGCAGGAAACATCATCTCCTTCCTGGTGTTCCTTGCACCAGTGGCGACGTTCTTGCAGGTGTACAAGAAGAAGTCGACGGGAGGGTACAGCTCGGTGCCGTACGTGGTGGCGCTCTTCAGCTCGGTGCTGTGGATCTTCTACGCGCTGGTGAAGACCAACTCGAGGCCGCTGCTGACCATCAACGCCTTCGGC TGCGGCGTCGAGGCCGCC TAC ATCGTCC TCTA CCTCGTCTACGCGCC GCGCCG CGCCA AGC TCCGCA CCCTC GCC TTC TTCCT CCTCC TCGA CGTC CCC G C TTC GCCCTCATCGTCGTCA CACCCTCTACCTCGTCCCC AG CCCACCAG ]
[+] EMBL CB667487 [ AGCTAGCATCTCTTGTGTCAGGAAGTTGGAAGGGATTTCTGGCTAGTTTCTAGCTGGTGTCTCCTCTCCTCTTCCTAACCTTCTCACTGATTAACACCTTAGAGTTAGTTAATAACCTTCATCACCAGTAGCAATGGCAGGAGGTTTCTTGTCCATGGCTAACCCGGCGGTCACCCTCTCCGGTGTTGCAGGAAACATCATCTCCTTCCTGGTGTTCCTTGCACCAGTGGCGACGTTCTTGCAGGTGTACAAGAAGAAGTCGACGGGAGGGTACAGCTCGGTGCCGTACGTGGTGGCGCTCTTCAGCTCGGTGCTGTGGATCTTCTACGCGCTGGTGAAGACCAACTCGAGGCCGCTGCTGACCATCAACGCCTTCGGC TGCGGCGTCGAGGCCGCC TAC ATCGTCC TCTA CCTCGTCTACGCGCC GCGCCG CGCCA GGC TCCGCA CCCTC GCC TTC TTCCT CCTCC TCGA CGTC GCC GCC TTC GCCCTCATCGTCGTCACCACCCTCTACCTCGTCCCCAAGCCCCACCAGGTCAAGTTCCTCGGCAGCGTCTGCCTCGCCTTCTCCATGGCCGTCTTCGTCGCCCCTCTCTCCATCATCTTCAAGGTGATCAAGACCAAGAGCGTCGAGTTCATGCCGATCGGGCTCTCCGTCTGCCTCACGCTCAGCGCCGTCGCGTGGTTCTGCTACGGCCTCTTCACCAAGGACCCCTACGTCATGTACCCGAACGTGGGCGGCTTCTTCTTCAGCTGCGTGCAGATGGGGCTCTACTTCTG ]
[+] EMBL CB667446 [ AGCTCCCTTCTCTTGTGTCAGGAAGTTGGAAGGGATTTCTGGCTAGTTTCTAGCTGGTGTCTCCTCTCCTCTTCCTAACCTTCTCACTGATTAACACCTTAGAGTTAGTTAATAACCTTCATCACCAGTAGCAATGGCAGGAGGTTTCTTGTCCATGGCTAACCCGGCGGTCACCCTCTCCGGTGTTGCAGGAAACATCATCTCCTTCCTGGTGTTCCTTGCACCAGTGGCGACGTTCTTGCAGGTGTACAAGAAGAAGTCGACGGGAGGGTACAGCTCGGTGCCGTACGTGGTGGCGCTCTTCAGCTCGGTGCTGTGGATCTTCTACGCGCTGGTGAAGACCAACTCGAGGCCGCTGCTGACCATCAACGCCTTCGGC TGCGGCGTCGAGGCCGCC TAC ATCGTCC TCTA CCTCGTCTACGCGCC GCGCCG CGCCA GGC TCCGCA CCCTC GCC TTC TTCCT CCTCC TCGA CGTC GCC GCC TTC GCCCTCATCGTCGTCACCACCCTCTACCTCGTCCCCAAGCCCCACCAGGTCAAGTTCCTCGGCAGCGTCTGCCTCGCCTTCTCCATGGCCGTCTTCGTCGCCCCTCTCTCCATCATCTTCAAGGTGATCAAGACCAAGAGCGTCGAGTTCATGCCGATCGGGCTCTCCGTCTGCCTCACGCTCAGCGCCGTCGCGTGGTTCTGCTACGGCCTCTTCACCAAGGACCCCTACGTCATGT ]
[+] EMBL AU076107 [ GGCTAGTTTCTAGCTGGTGTCTCCTCTCCTCTTCCTAACCTTCTCACTGATTAACACCTTAGAGTTAGTTAATAACCTTCATCACCAGTAGCAATGGCAGGAGGTTTCTTGTCCATGGCTAACCCGGCGGTCACCCTCTCCGGTGTTGCAGGAAACATCATCTCCTTCCTGGTGTTCCTTGCACCAGTGGCGACGTTCTTGCAGGTGTACAAGAAGAAGTCGACGGGAGGGTACAGCTCGGTGCCGTACGTGGTGGCGCTCTTCAGCTCGGTGCTGTGGATCTTCTACGCGCTGGTGAAGACCAACTCGAGGCCGCTGCTGACCATCAACGCCTTCGGCTTGCGGCGTCGAAGCCGCCTTACAATCGTCCTTCTACCCTCGTCTACGCGCCGGCGCCGNGGCCAAGGGCTTCCGCANCCTTCGGCCTTTCTTTCCTCCCTCCTTCGAANGGTCGGCCGGCCTTTCGGCCCTncaa ]
[+] EMBL AU094691 [ GGCTAGTTTCTAGCTGGTGTCTCCTCTCCTCTTCCTAACCTTCTCACTGATTAACACCTTAGAGTTAGTTAATAACCTTCATCACCAGTAGCAATGGCAGGAGGTTTCTTGTCCATGGCTAACCCGGCGGTCACCCTCTCCGGTGTTGCAGGAAACATCATCTCCTTCCTGGTGTTCCTTGCACCAGTGGCGACGTTCTTGCAGGTGTACAAGAAGAAGTCGACGGGAGGGTACAGCTCGGTGCCGTACGTGGTGGCGCTCTTCAGCTCGGTGCTGTGGATCTTCTACGCGCTGGTGAAGACCAACTCGAGGCCGCTGCTGACCATCAACGCCT ]
[-] EMBL CB667488 [ CGAACGTGGGCGGCTTCTTCTTCAGCTGCGTGCAGATGGGGCTCTACTTCTGGTACCGGAAGCCGAGGAACACGGCCGTGCTGCCGACGACGT CCGACTCCATGT CCCCGATTTCCG CCGCCG CCGCCGCCACGCAGAGGGTGATCGAGCT CCCCGCCGGCACGCACGCCTTCACCATCCTGTCCGTGAGCCCCATCCCGA TCCTCGGCGTGCACAAGGTCGAGGTGGTGGCCGCCGAGCAGGCGGC CGACGGCGTCGCCGCCGCCGCCGCCGCCGACAAGGAGCTGCTGCAGAACAAGCCGGAGGTGATCGAGATCACCGCCGCCGTGTGACGACGACTGATCTCGACGACGACAGATTCTCGCTACTGATGAAGAAGACGACGACGATGGCCGGAT CGATGACGGACAGAATTTAG CAGTGTGGATTACTACCGAACTTTAATTAGTTGGTTAATTATTGGATTACAATG TGGTAAGAGTGTGTCATTAGCAGCTAGTTAACTTACTTAAATTAATTATCTTGTTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGCTTTGAGTGAGTGAGTGAGTGATCTCGACGTAGTTTGCTGGTTGGTGTAATAAGAAAAAGGCGATCTACTAGTAGTCTACTAGCTAGTACGCATGCATGTGTGTGTGCTCTACTTACCGTGTTGCAATCTCATCTCTTTGTACTTACAACTCAGAAATCAGTGGAAGATTGTGACAGGTATTATTAGTAAAAAAAAAAAAAGA ]
[-] EMBL CB667447 [ GGGGCTCTACTTTTGGTACCGGAAGCCGAGGAACACGGCCGTGCTGCCGACGACGT CCGACTCCATGT CCCCGATTTCCG CCGCCG CCGCCGCCACGCAGAGGGTGATCGAGCT CCCCGCCGGCACGCACGCCTTCACCATCCTGTCCGTGAGCCCCATCCCGA TCCTCGGCGTGCACAAGGTCGAGGTGGTGGCCGCCGAGCAGGCGGC CGACGGGGTCGCCGCCGCCGCCGCCGCCGACAAGGAGCTGCTGCAGAACAAGCCGGAGGTGATCGAGATCACCGCCGCCGTGTGACGACGACTGATCTCGACGACGACAGATTCTCGCTACTGATGAAGAAGACGACGACGATGGCCGGAT CGATGACGGACAGAATTTAG CAGTGTGGATTACTACCGAACTTTAATTAGTTGGTTAATTATTGGATTACAATG TGGTAAGAGTGTGTCATTAGCAGCTAGTTAACTTACTTAAATTAATTATCTTGTTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGCTTTGAGTGAGTGAGTGAGTGATCTCGACGTAGTTTGCTGGTTGGTGTAATAAGAAAAAGGCGATCTACTAGTAGTCTACTAGCTAGTACGCATGCATGTGTGTGTGCTCTACTTACCGTGTTGCAATCTCATCTCTTTGTACTTACAACTCAGAAATCAATGGAAGATTGTGACAGGTATT TTCGTAAAAAACAAAAggt ]
[+] EMBL AU096188 [ ACGT CCGNCTCCATGT CCCCGATTTCCGCCCGCCG CCGCCGCCACGCAGAGGGTGATCGAGCT CCCCGCCGGNACGCACGCCTTCACCATCCTGTCCGTGAGCCCCATCCCGA TCCTCGGCGTGCACAAGGTCGAGGTGGTGGCCGCCGAGCAGGCGGCTCGAACGCGTCGCCGCCGCCGCCGCCNCCGACAAGGAGCTGCTGCAGAACAAGCCGGAGGTGATCGAGATCACCGCCGCCGTGTGACGACGACTGATCTCGACGACGACAGATTCTCGCTACTGATGAAGAAGACGACGACGATGGCCGGAT CGATGACGGACAGAATTTAG CAGTGTGGATTACTACCGAACTTTAATTAGTTGGTTAATTATTGGATTACAATG TGGTAAGAGTGTGTCATTAGCAGCTAGTTAACTTACTTAAATTAATTATCTTGTTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGCTTTGAGTGAGTGAGTGAGTGATCTCGACGTAGTTTGCTGGTTGGTGTAATAAGAAAAAGGCGATCTACTAGTAGTCTACTAGCTAGTANGCATGCATGTGTGTGTGCTCTACTTACCGTGTTGCAATCTCATCTCTTTGTACTTACAACTCAGAAATCAATGGAAGATTGTGACAGGTATTATTAGTAGTTAAAAA ]
[+] EMBL AU082669 [ CGTCCCGACTCCATGTCCCCCGATNTCCGCCCTCCGCCCGCCGCCACGCAGAGGTTGATCGAGCTCCCCCGCC GCACGCACGCCTTCACCATCCTNTCC TGAGCCCCTCCCCGANTCCTCGGCGTGCACAAGGTCGAGGTGGTGGCCGCCGAGCAGGCGGC CGAC GCGTCGCCGCCGCCGCCGCCCCCGACAAGGAGCTGCTGCAGAACAAGCCGGAGGTGATCGAGATCACCGCCGCCGTGTGACGACGACTGATCTCGACGACGACAGATTCTCGCTACTGATGAAGAAGACGACGACGATGGCCGGAT CGATGACGGACAG ATTTAGCCAGTGTGGATTACTACCGAACTTTAATTAGTTGGTTAATTATTGGATTACAATG TGGTAAGAGTGTGTCATTAGCAGCTAGTTAACTTACTTAAATTAATTATCTTGTTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGCTTTGAGTGAGTGAGTGAGTGATCTCGACGTAGTTTGCTGGTTGGTGTAATAAGAAAAAGGCGATCTACTAGTAGTCTACTAGCTAGTACGCATGCATGTGTGTGTGCTCTACTTACCGTGTTGCAATCTCATCTCTTTGTACTTACAACTCAGAAATCAATGGAAGATTGTGACAGGTA A AAAAAAAAAAAAAAAANAAAA ]
[-] EMBL CB657177 [ ATTTCCG CTGCCG CCGCCGCCACGCAGAGGGTGATGGAGTT CCCCGCCGGCACGCACGCCTTCACCATCCTGTCGGTGAGCCCCATCCCGA TCCTCGGGGTGCACAAGGTGGAGGTGGTGGCCGCCGAGCAGGCGGC CGACGGGGTTGCCCCCCCCGCCGCCGCCGACAAGGAGGTGTTGCAGAACAAGCCGGAGGTGATGGAGATCCCCGCCCCCGTGTGACGACGACTGATTTTGAGGAGGACAGATTTTCGTTATTGATGAAGAAGACGACGACGATGGCCGGAT CGATGACGGACAGAATTTAG CAGTGTGGATTACTACCGACCTTTAATTAGTTGGTTAATTATTGGATTCCAATG GGGTAAGAGTGTGTCATTAGCAGCTAGTTAACTTACTTAAAATAATTATCTTGTTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGCTTTGAGTGAGTGAGTGAGTGATCTCGACGTAGTTTGTTGGTTGGTGTAATAAGAAAAAGGCGATTTACTAGTAGTTTACTAGTTAGTACGCATGCAGGTGGGTGGGCTTTACTTACCGTGTGGCAATTTCATTTCTTTGTACTTACAACTCAGAAATCAATGGAAGATTGTGCCAGGTATTATTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAA]
[+] EMBL AU076108 [ TGCTGCAGAACAANCCGGAGGTGATCGAGATCACCGCCNCCGTGTGACGACGACTGATCTCGACGACGACAGATTCTCGCTACTGATGAAGAAGACGACGACGATGNCCGGATCCGATGACGGACAGAATTTAG CAGTGTGGATTACTNCCGAACTTTAATTAGTTGGTTAATTATTGGATTACAATG TGGTAAGAGTGTGTCATTAGCAGCTAGTTAACTTACTTAAATTAATTATCTTGTTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGCTTTGAGTGAGTGAGTGAGTGATCTCGACGTAGTTTGCTGGTTGGTGTAATAAGAAAAAGGCGATCTACTAGTAGTCTACTAGCTAGTACGCATGCATGTGTGTGTGCTCTACTTACCGTGTTGCAATCTCATCTCTTTGTACTTACAACTCAGAAATCAATGGAAGATTGTGACAGGTATTATTAGTAGTTAAAAAAAAA ]
[+] EMBL C99575 [ ttgGGATTACAATGNTGGTAAGAGTGTGTCATTAGCAGCTAGTTAACTTACTTAAATTAATTATCTTGTTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGCTTTGAGTGAGTGAGTGAGTGATCTCGACGTAGTTTGCTGGTTGGTGTAATAAGAAAAAGGCGATCTACTAGTAGTCTACTAGCTAGTACGCATGCATGTGTGTGTGCTCTACTTACCGTGTTGCAATCTCATCTCTTTGTACTTACAACTCAGAAATCAATGGAAGATTGTGACAGGTATTATTAGTAGTTAAAAAAAAA ]
consensusID : consensus_15265#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 552 fasta sequence
[TCCGTGACCCCATCCCCGATCCTCGGCGTGCACAAGGTCGAGGTGTGCCCCGAGCAGCGCCGACGGCGTCCCCCCCCCCCCCGACAAGGAGCTGCTCAGAACAAGCCGGAGGTGATCGAGATCACCGCCGCCGTGTGACGACGACTGATCTCGACGACGACAGATTCTCGCTACTGATGAAGAAGACGACGACGATGGCCGGATCGATGACGGACAGAATTTAGCAGTGTGGATTACTACCGAACTTT-AATTAGTTGGTTAA-TTATTGGATTACAAATGTGGTAAGAGTGTGTCATTAGCAGCTAGTTAAC-TTA-CTTAAATTAATTATCTT-GTTCAGTCAGTCAGTCAGTCAGCTTTGAGTGAGTGAGTGAGTGATCTCGACGTAGTTTGCTGGTTGGTGTAATAAGAAAAAGGCGATCTACTAGTAGTCTACTAGCTAGTACGCATGCATGTGTGTGTGCTCTACTTACCGTGTTGCAATCTCATCTCTTTGTACTTACAACTCAGAAATCAATGGAAGA-TTGTGACAGGTATTATTAGTA---AAAAAAAAAA]
[+] EMBL BI800838 [TCCGTGACCCCATCCCCGATCCTCGGCGTGCACAAGGTCGAGGTGTGCCCCGAGCAGCGCCGACGGCGTCCCCCCCCCCCCCGACAAGGAGCTGCTCAGAACAAGCCGGAGGTGATCGAGATCACCGCCGCCGTGTGACGACGACTGATCTCGACGACGACAGATTCTCGCTACTGATGAAGAAGACGACGACGATGGCCGGATCGATGACGGACAGAATTTAGCAGTGTGGATTACTACCGAACTTT AATTAGTTGGTTAA TTATTGGATTACAAATGTGGTAAGAGTGTGTCATTAGCAGCTAGTTAAC TTA CTTAAATTAATTATCTT GTTCAGTCAGTCAGTCAGTCAGCTTTGAGTGAGTGAGTGAGTGATCTCGACGTAGTTTGCTGGTTGGTGTAATAAGAAAAAGGCGATCTACTAGTAGTCTACTAGCTAGTACGCATGCATGTGTGTGTGCTCTACTTACCGTGTTGCAATCTCATCTCTTTGTACTTACAACTCAGAAATCAATGGAAGA TTGTGACAGGTATTATTAGTA AAAAAAA ]
[+] EMBL BI798706 [ gggctTGCTCAGAACAAGCCGGAGGTGATCGAGATCACCGCC CCGTGTGACGACGACTGATCTCGACGACGACAGATTCTCGCTACTGATGAAGAAGACGACGACGAT GCCGGATCGATGACGGACAGAATTTA CAGTGTGGATTACTACCGAACTTTAAATTATTTGGTTAATTTATTGGATTAC AATGTGGTAAGAGTGTGTCATTA CAGCTAGTTAACTTTACCTTAAATTAATTATCTTGGTTCAGTCAGTCAGTCAGTCAGCTTTGAGTGAGTGAGTGAGTGATCTCGACGTAGTTTGCTGGTTGGTGTAATAAGAAAAAGGCGATCTACTAGTAGTCTACTAGCTAGTACGCATGCATGTGTGTGTGCTCTACTTACCGTGTTGCAATCTCATCTCTTTGTACTTACAACTCAGAAATCAATGGAAGACTTGTGACAGGTATTATTAGTAGTTAAAAAAAAAA]
consensusID : consensus_15265#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 314 fasta sequence
[CGAACTTTAATTAGTTGGTTAATTATTGGATTACAATGTGGTAAGAGTGTGTCATTAGCAGCTAGTTAACTTACTTAAATTAATTATCTTGTTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGCTTTGAGTGAGTGAGTGAGTGATCTCGACGTAGTTTGCTGGTTGGTGTAACTAAGAAAAAGGCGATCTACTAGTAGTCTACTAGCTAGTACGCATGCATGTGTGTGTGCTCTACTTACCGTGGTTCGCAATCTCATCTCTTTGTACTTACAACTCAGAAATCACATGGAAGATTNCCCNCCACGGTATTA]
[+] EMBL BI806113 [CGAACTTTAATTAGTTGGTTAATTATTGGATTACAATGTGGTAAGAGTGTGTCATTAGCAGCTAGTTAACTTACTTAAATTAATTATCTTGTTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGCTTTGAGTGAGTGAGTGAGTGATCTCGACGTAGTTTGCTGGTTGGTGTAACTAAGAAAAAGGCGATCTACTAGTAGTCTACTAGCTAGTACGCATGCATGTGTGTGTGCTCTACTTACCGTGGTTCGCAATCTCATCTCTTTGTACTTACAACTCAGAAATCACATGGAAGATTNCCCNCCACGGTATTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15265#0 AGTTGTAGTAGCACTTAAGCCTTCCTCTCTAGCTAGCATCTCTTGTGTCAGGAAGTTGGA 60
consensus_15265#1 ------------------------------------------------------------
consensus_15265#2 ------------------------------------------------------------
consensus_15265#0 AGGGATTTCTGGCTAGTTTCTAGCTGGTGTCTCCTCTCCTCTTCCTAACCTTCTCACTGA 120
consensus_15265#1 ------------------------------------------------------------
consensus_15265#2 ------------------------------------------------------------
consensus_15265#0 TTAACACCTTAGAGTTAGTTAATAACCTTCATCACCAGTAGCAATGGCAGGAGGTTTCTT 180
consensus_15265#1 ------------------------------------------------------------
consensus_15265#2 ------------------------------------------------------------
consensus_15265#0 GTCCATGGCTAACCCGGCGGTCACCCTCTCCGGTGTTGCAGGAAACATCATCTCCTTCCT 240
consensus_15265#1 ------------------------------------------------------------
consensus_15265#2 ------------------------------------------------------------
consensus_15265#0 GGTGTTCCTTGCACCAGTGGCGACGTTCTTGCAGGTGTACAAGAAGAAGTCGACGGGAGG 300
consensus_15265#1 ------------------------------------------------------------
consensus_15265#2 ------------------------------------------------------------
consensus_15265#0 GTACAGCTCGGTGCCGTACGTGGTGGCGCTCTTCAGCTCGGTGCTGTGGATCTTCTACGC 360
consensus_15265#1 ------------------------------------------------------------
consensus_15265#2 ------------------------------------------------------------
consensus_15265#0 GCTGGTGAAGACCAACTCGAGGCCGCTGCTGACCATCAACGCCTTCGGCTGCGGCGTCGA 420
consensus_15265#1 ------------------------------------------------------------
consensus_15265#2 ------------------------------------------------------------
consensus_15265#0 GGCCGCCTACATCGTCCTCTACCTCGTCTACGCGCCGCGCCGCGCCAGGCTCCGCACCCT 480
consensus_15265#1 ------------------------------------------------------------
consensus_15265#2 ------------------------------------------------------------
consensus_15265#0 CGCCTTCTTCCTCCTCCTCGACGTCGCCGCCTTCGCCCTCATCGTCGTCACCACCCTCTA 540
consensus_15265#1 ------------------------------------------------------------
consensus_15265#2 ------------------------------------------------------------
consensus_15265#0 CCTCGTCCCCAAGCCCCACCAGGTCAAGTTCCTCGGCAGCGTCTGCCTCGCCTTCTCCAT 600
consensus_15265#1 ------------------------------------------------------------
consensus_15265#2 ------------------------------------------------------------
consensus_15265#0 GGCCGTCTTCGTCGCCCCTCTCTCCATCATCTTCAAGGTGATCAAGACCAAGAGCGTCGA 660
consensus_15265#1 ------------------------------------------------------------
consensus_15265#2 ------------------------------------------------------------
consensus_15265#0 GTTCATGCCGATCGGGCTCTCCGTCTGCCTCACGCTCAGCGCCGTCGCGTGGTTCTGCTA 720
consensus_15265#1 ------------------------------------------------------------
consensus_15265#2 ------------------------------------------------------------
consensus_15265#0 CGGCCTCTTCACCAAGGACCCCTACGTCATGTACCCGAACGTGGGCGGCTTCTTCTTCAG 780
consensus_15265#1 ------------------------------------------------------------
consensus_15265#2 ------------------------------------------------------------
consensus_15265#0 CTGCGTGCAGATGGGGCTCTACTTCTGGTACCGGAAGCCGAGGAACACGGCCGTGCTGCC 840
consensus_15265#1 ------------------------------------------------------------
consensus_15265#2 ------------------------------------------------------------
consensus_15265#0 GACGACGTCCGACTCCATGTCCCCGATTTCCGCCGCCGCCGCCGCCACGCAGAGGGTGAT 900
consensus_15265#1 ------------------------------------------------------------
consensus_15265#2 ------------------------------------------------------------
consensus_15265#0 CGAGCTCCCCGCCGGCACGCACGCCTTCACCATCCTGTCCGTGAGCCCCATCCCGATCCT 960
consensus_15265#1 -------------------------------------TCCGTGACCCCATCCCCGATCCT 23
consensus_15265#2 ------------------------------------------------------------
consensus_15265#0 CGGCGTGCACAAGGTCGAGGTGGTGGCCGCCGAGCAGGCGGCCGACGGCGTCGCCGCCGC 1020
consensus_15265#1 CGGCGTGCACAAGGTCGAGGTG-TGCCC--CGAGCAG--CGCCGACGGCGTCCCCCCCCC 78
consensus_15265#2 ------------------------------------------------------------
consensus_15265#0 CGCCGCCGCCGACAAGGAGCTGCTGCAGAACAAGCCGGAGGTGATCGAGATCACCGCCGC 1080
consensus_15265#1 CCC------CGACAAGGAGCTGCT-CAGAACAAGCCGGAGGTGATCGAGATCACCGCCGC 131
consensus_15265#2 ------------------------------------------------------------
consensus_15265#0 CGTGTGACGACGACTGATCTCGACGACGACAGATTCTCGCTACTGATGAAGAAGACGACG 1140
consensus_15265#1 CGTGTGACGACGACTGATCTCGACGACGACAGATTCTCGCTACTGATGAAGAAGACGACG 191
consensus_15265#2 ------------------------------------------------------------
consensus_15265#0 ACGATGGCCGGATCGATGACGGACAGAATTTAGCAGTGTGGATTACTACCGAACTTTAAT 1200
consensus_15265#1 ACGATGGCCGGATCGATGACGGACAGAATTTAGCAGTGTGGATTACTACCGAACTTTAAT 251
consensus_15265#2 -------------------------------------------------CGAACTTTAAT 11
***********
consensus_15265#0 TAGTTGGTTAATTATTGGATTACAA-TGTGGTAAGAGTGTGTCATTAGCAGCTAGTTAAC 1259
consensus_15265#1 TAGTTGGTTAATTATTGGATTACAAATGTGGTAAGAGTGTGTCATTAGCAGCTAGTTAAC 311
consensus_15265#2 TAGTTGGTTAATTATTGGATTACAA-TGTGGTAAGAGTGTGTCATTAGCAGCTAGTTAAC 70
************************* **********************************
consensus_15265#0 TTACTTAAATTAATTATCTTGTTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGCTTTGA 1319
consensus_15265#1 TTACTTAAATTAATTATCTTGTTCAGTCAGTCA------------GTCAGTCAGCTTTGA 359
consensus_15265#2 TTACTTAAATTAATTATCTTGTTCAGTCAGTCAGTCAGTCAGTCAGTCAGTCAGCTTTGA 130
********************************* ***************
consensus_15265#0 GTGAGTGAGTGAGTGATCTCGACGTAGTTTGCTGGTTGGTGTAA-TAAGAAAAAGGCGAT 1378
consensus_15265#1 GTGAGTGAGTGAGTGATCTCGACGTAGTTTGCTGGTTGGTGTAA-TAAGAAAAAGGCGAT 418
consensus_15265#2 GTGAGTGAGTGAGTGATCTCGACGTAGTTTGCTGGTTGGTGTAACTAAGAAAAAGGCGAT 190
******************************************** ***************
consensus_15265#0 CTACTAGTAGTCTACTAGCTAGTACGCATGCATGTGTGTGTGCTCTACTTACCGTG--TT 1436
consensus_15265#1 CTACTAGTAGTCTACTAGCTAGTACGCATGCATGTGTGTGTGCTCTACTTACCGTG--TT 476
consensus_15265#2 CTACTAGTAGTCTACTAGCTAGTACGCATGCATGTGTGTGTGCTCTACTTACCGTGGTTC 250
******************************************************** *
consensus_15265#0 GCAATCTCATCTCTTTGTACTTACAACTCAGAAATCA-ATGGAAGATTGTGACAGGTATT 1495
consensus_15265#1 GCAATCTCATCTCTTTGTACTTACAACTCAGAAATCA-ATGGAAGATTGTGACAGGTATT 535
consensus_15265#2 GCAATCTCATCTCTTTGTACTTACAACTCAGAAATCACATGGAAGATTNCCCNCCACGGT 310
************************************* ********** *
consensus_15265#0 ATTAGTAAAAAAAAAAAAAGAAAAAAAAAAAAAGGAA 1532
consensus_15265#1 ATTAGTAAAAAAAAAAA-------------------- 552
consensus_15265#2 ATTA--------------------------------- 314
****
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||