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Oryza sativa
cluster # 15269 cluster # 15269       Sequences # 21       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_15269#0 length = 907 sequences # 15  
consensus_15269#1 length = 624 sequences # 2  
consensus_15269#2 length = 480 sequences # 2  
consensus_15269#3 length = 344 sequences # 1  
consensus_15269#4 length = 323 sequences # 1  

consensusID : consensus_15269#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 15
consensus length = 907
fasta sequence
                              [TAGTTGCAGACCATCACTTACGTAGCCCTGTGTGCAACGGCGCAAGTGCTTGTACGCTTTCAGCTAGCGTAG-CATG-GCTTCCAGGGCATTCCT-CCTCGTGGCTCTAAACCTGGTCCTCTTCTTCACCGTGGCCAGCGCCTGCGGCAAGTACTGCCCGACGCCTTCGACGCCGTCGACGACGCCATCGACGCCGTCCTACAACACCAAGTGCCCCAAGAACGCGCTCAAGTT-CGCGGCGTGCGCCGACGTGCTGGGCC---TC-GTCAGCGCCGAGGTCGGCCAGCCGCCGTACGAGCCGTGCTGCGGCGTCCTCGGCGGC-CTCGCCGACCTTGAGGCCGCCGTCTGTCTC-TGCACCGCCATCAAGGCCAACGTGCT-CGGCATCACCCTCGACATCCCCGTCAAGCTCAGCCTCCTCGTCAACTACTGCGGCAAGAACGTCCCTAGTGGCTTCATCTGTGCTTAAGCTACGTAACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATCGTTCGTTCTTGAGTGCCT-GCAT-GCATATCGGTCGAGTCTTTACTTACTCTGTTATTAGTTCTGAATGTA-GAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTACTTGATTTGTTTATGTTTCTTCAGTTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTGTTCTCCAAGGAATTGCATGCAATGGATACTCTTTTAGATTGAATTTGGCGTGTCTATGTCTGGGTGTGGTTGTAATTTGCTTGCAGTACGTTCTCGTAGTTTAATTGTAAGCAAGCAATTGTACGACAAAATGTACTTAGGACAGTTAATTTGTTGGAAATTTCGGTGTG-AATTATTTTTTAAAAAAAAAATAAAAAAAAA]

[+] EMBL AK058218             [TAGTTGCAGACCATCACTTACGTAGCCCTGTGTGCAACGGCGCAAGTGCTTGTACGCTTTCAGCTAGCGTAGCCATG GCTTCCAGGGCATTCCT CCTCGTGGCTCTAAACCTGGTCCTCTTCTTCACCGTGGCCAGCGCCTGCGGCAAGTACTGCCCGACGCCTTCGACGCCGTCGACGACGCCATCGACGCCGTCCTACAACACCAAGTGCCCCAAGAACGCGCTCAAGTT CGCGGCGTGCGCCGACGTGCTGGGCC   TC GTCAGCGCCGAGGTCGGCCAGCCGCCGTACGAGCCGTGCTGCGGCGTCCTCGGCGGC CTCGCCGACCTTGAGGCCGCCGTCTGTCTC TGCACCGCCATCAAGGCCAACGTGCT CGGCATCACCCTCGACATCCCCGTCAAGCTCAGCCTCCTCGTCAACTACTGCGGCAAGAACGTCCCTAGTGGCTTCATCTGTGCTTAAGCTACGTAACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATCGTTCGTTCTTGAGTGCCT GCAT GCATATCGGTCGAGTCTTTACTTACTCTGTTATTAGTTCTGAATGTA GAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTACTTGATTTGTTTATGTTTCTTCAGTTAAACAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTGTTCTCCAAGGAATCGCATGCAATGGATACTC                                                                                                                                                                           ]
[-] EMBL CB643292             [           CATCACTTACGTAGCCCTGTGTGCAACGGCGCAAGTGCTTGTACGCTTTCAGCTAGCGTAGCCATG GCTTCCAGGGCATTCCT CCTCGTGGCTCTAAACCTGGTCCTTTTTTTCACCGTGGCCAGCGCCTGCGGCAAGTACTGCCCGACGCCTTTGACGCCGTTGACGACGCCATCGACGCCGTCCTACAACACCAAGTGCCCCAAGAACGCGCTCAAGTT CGCGGCGTGCGCCGACGTGCTGGGCC   TC GTCAGCGCCGAGGTCGGCCAGCCGCCGTACGAGCCGTGCTGCGGCGTCCTCGGCGGC CTCGCCGACCTTGAGGCCGCCGTCTGTTTT TGCACCGCCATCAAGGCCAACGTGCT CGGCATCACCCTCGACATCCCCGTCAAGCTCAGCCTCCTCGTCAACTAATGCGGCAAGAACGTCCCTAGTGGCTTCATCTGTGCTTAAGCTACGTAACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATCGTTGGTTCTTGAGTGCCT GCAT GCATATCGGTGGAGTCTTTACTTACTCTGTTATTAGTTTTGAATGTA GAACTGCTTCAGATATCAATCCAGGGAGTTAACTGTACTTGATTTGTTTATGTTTCTTCAGTTAATCAGTTTCTGTCATCATTTGGTCAATGGATGGAGGTTTTGT                                                                                                                                                                                                         ]
[+] EMBL C74096               [           CATCACTTACGTAGCCCTGTGTGCAACGGCGCAAGTGCTTNTACGCTTTCAGCTAGCGTAN CATGNGCTTCCAGGGCATTCCT CCTCGTGGCTCTAAACCTGGTCCTCTTCTTCACCGTGGCCAGCGCCTGCGGCAAGTACTGCCCGACGNCTTCGACGNCGTCGACGACGCCATCGACGNCGTCCTACAACACCANGTGCCCCAAGAACGNGCTCAAGTT CGCGGCGTGCG CGACGTGCTGGGNC   TC GTCAGNGCCGAGGTCGGCCANGCGTCGTACGAGCCGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL OS1321708            [              CACTTACGTAGCCCTGTGTGCAACGGCGCAAGTNCTTGTACGCTTTCAGCTAGCGTAG CATG GCTTCCAGGGCATTCCT CCTCGTGGCTCTAAACCTGGTCCTCTTCTTCACCGTGGCCAGCGCCTGCGGCAAGTACTGCCCGACGCCTTCGACGCCGTCGACGACGCCATCGACGCCGTCCTACAACACCAAGTGCCCCAAGAACGCGCTCAAGTT CGCGGCGTGCGCCGACGTGCTGGGCC   TC GTCAGCGCCGAGGTCGGCCAGCCGCCGTACGAGCCGTGCTGCGGCGTCCTNGGCGGC CTCG CGACCTTGAGGCCGCCGTCTGTTTC TGCACCGCCATCAAGG CAACGTGCT CGGNATCACCCTCGANAT CCCGTAAAG TCAGCt                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL OSS15892A            [                       AGCCCTGTGTGC ACGGCGCAAGTNCTTGTACGCTTTCAGCTAGCGTAG CATG GCTTCCAGGGCATTCCT CCTCGTGGCTCTAAACCTGGTCCTCTTCTTCACCGTGGCCAGCGCCTGCGGCAAGTACTGCCCGACGCCTTCGACGCCGTCGACGACGCCATCGACGCCGTCCTACAACACCAAGTGCCCCAAGAACGCGCTCAAGTT CGCGGCGTGCGCCGACGTGCTGGGCC   TC GTCAGCGCCGAGGTCGGCCAGCCGCCGTACGAGCCGTGCTGCGGCGTCCTNGGCGGC CTCG CGACCTTGAGGCCGGCGTCTGTNTC TGCACCGNCATCAAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL OSS4321A             [                       AGCCCTGTGTGCAACGGCGCAAGTGCTTGTACGCTTTCAGCTAGCGTAG CATG GCTTCCAGGGCATTCCT CCTCGTGGCTCTAAACCTGGTCCTCTTCTTCACCGTGGCCAGCGCCTGCGGCAAGTACTGCCCGACGCCTTCGACGNCGTCGACGACGTCATCGACGNCGTCCTACAACACCAAGTGCCCCAAGAACGCGCTCAAGTT CGCGGCGTGCGCCGACGTGCTGGGCC   TC GTCAGCGCCGAGGTCGGCCAGCCGCCGTACGAGCCGTGCTGCGGCGTCCTCGGCGGC CTCG CGACCTTGAGGCCGCCGTCTGTCTN TGAACCGCAATCAAGGCCAACGTGTT CGGAATnaa                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL C74084               [                         CCCTGTGTGC ACGNCGCAAGTNCTTGTACGCTTTCAGCTAGCGTAN CATG GCTTCCAGGGCATTCCT CCTCGTGGCTCTAAACCTGGTCCTCTTCTTCACCGTGGCCAGCGCCTGCGGCAAGTACTGCCCGACGCCTTCGACGCCGTCGACGACGCCATCGACGCCGTCCTACAACACCAAGTNCCCCAAGAACGCGCTCAAGTT CGCGGCGTNCGCCGACGTGCTGGGCC   TC GTCANCGCCGAGGTCGGCCAACCGCCGTACGAGCCGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU029427             [                                                                                       GCATTCCTCCCTCGTGGCTCTAAACCTGGT CTCTTCTTCACCGTGGCCA  GCCTGCGGCAAGTACTNCCCGACGCCTTCGACGCCGTCGACGACGCCATCGACGCCGTCCTACAACACCAAGTGCCCCAAGAACGCGCTCAAGTTCCGC GCNTGCGCCGACNTGCTGGGCC   TC GTCAGCGCCGAGGTCGGCCAGCCGCCGTACGAGCCGTGCTGCGGCGTCCTCGGCGGC CTCGCCGACCTTGAGGCCGCCNTCTGTCTC TGCACCGCCATCAAGGCCAACGTGCT CGGCATCACCCTCGACATCCCCGTCAAGCTCAGCCTCCTCGTCAACTACTGCGGCAAGAACGTCCCTAGTGGCTTCATCTGTGCTTAAGCTACGTAACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATCGTTCGTTCTTGAGTGCCT GCAT GCATATCGGTCGAGTCTTTACTTACTCTGTTATTAGTTCTGAATGTA GAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTACTTGATTTGTTTATGTTTCTTCAGTTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTGTTCTCCAAGGAAaaaaa                                                                                                                                                                                         ]
[+] EMBL AU174369             [                                                                                                                                                                                                                                        TT CGCGGCGTGCGCCGACGTGNTGGGCC   TC GTCAGCGCCGAGGTCGGCCAGCCGCCGTACGAGCCGTGCTGCGGCGTCCTCGGCGGC CTCGCCGACCTTGAGGCCGCCGTCTGTCTN TGCACCGCCATCAAGGCCAACGTGCT CGGCATCACCCTCGACATCCCCGTCAAGCTCAGCCTCCTCGTCAACTACTGCGGCAAGAACGTCCCTAGTGGCTTCATCTGTGCTTAAGCTACGTAACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATCGTTCGTTCTTGAGTGCCT GCAT GCATATCGGTCGAGTCTTTACTTACTCTGTTATTAGTTCTGAATGTA GAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTACTTGATTTGTTTAaaaaa                                                                                                                                                                                                                                                            ]
[+] EMBL CB679517             [                                                                                                                                                                                                                                            GCGGCCTGCGCCGACGTGCTGGGCC   TC GTCAGCGCCGAGGTCGGCCAGCCGCCGTACGAGCCGTGCTGCGGCGTCCTCGGCGGC CTCGCCGACCTTGAGGCCGCCGTCTGTCTC TGCACCGCCATCAAGGCCAACGTGCT CGGCATCACCCTCGACATCCCCGTCAAGCTCAGCCTCCTCGTCAACTACTGCGGCAAGAACGTCCCTAGTGGCTTCATCTGTGCTTAAGCTACGTAACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATCGTTCGTTCTTGAGTGCCT GCAT GCATATCGGTCGAGTCTTTACTTACTCTGTTATTAGTTCTGAATGTA GAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTACTTGATTTGTTTATGTTTCTTCAGTTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGT                                                                                                                                                                                                              ]
[+] EMBL BI805424             [                                                                                                                                                                                                                                                               TGGGCCCCTTCGGTCAGC CCGA GTCGGCCA CCGCCGTACGAGCCGTGCTGCGGCGTCCTCGGCGGCACTCGCCGACCTTGAGGCC CCGTCTGTCTCGTGCACCGCCATCAAGGCCAACGTGCT CGGCATCACCCTCGACATCCCCGTCAAGCTCAGCCTCCTCGTCAACTACTGCGGCAAGAACGTCCCTAGTGGCTTCATCTGTGCTTAAGCTACGTAACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATCGTTCGTTCTTGAGTGCCTGGCATGGCATATCGGTCGAGTCTTTACTTACTCTGTTATTAGTTCTGAATGTACGCCCTNCCTCAGATATCAATCCAGCGAGTTAACTGTACTTGATTTGTTTATGTTTCTTCAGTTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGA GTTTTGTTCTCCAAGGAATTGCATCCAATGNATACTCTTTTAGATTGAAaaaaaaaa                                                                                                                                                       ]
[+] EMBL BI807078             [                                                                                                                                                                                                                                                                                                                                                                               CAAGGCC ACGTGCTGCGGCATCACCCTCGACATCCCCGTCAAGCTCAGCCTCCTCGTCAACTACTGCGGCAAGAACGTCCCTAGTGGCTTCATCTGTGCTTAAGCTACGTAACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATCGTTCGTTCTTGAGTGCCT GCAT GCATATCGGTCGAGTCTTTACTTACTCTGTTATTAGTTCTGAATGTA GAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTACTTGATTTGTTTATGTTTCTTCAGTTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTGTTCTCCAAGGAATCCCAT CAAaaa                                                                                                                                                                                 ]
[+] EMBL CB684886             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              AACGCCTTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATCGTTCGTTCTTGAGTGCCT GCAT GCATATCGGTCGAGTCTTTACTTACTCTGTTATTAGTTCTGAATGTA GAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTACTTGATTTGTTTATGTTTCTTCAGTTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTGTTCTCCAAGGAATTGCATGCAATGGATACTCTTTTAGATTGAATTTGGCGTGTCTATGTCTGGGTGTGGTTGTAATTTGCTTGCAGTACGTTCTCGTAGTTTAATTGTAAGCAAGCAATTGTACGACAAAATGTACTTAGGACAGTTAATTTGTTGGAAATTTCGGTGTG AATTATTTTT                     ]
[+] EMBL AU032887             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GAATGNA GAACTGCTTNAGATACCAATCCAGCGAG TAACTGNACTTGATTTGTNTATGTTCCTTCAGTTAATCAGTTTCTGNCATCATTTGGTNAATTAATGGAGGTTTTGTTCTCCAAGGAA TGCATGCAATGGATACTCTTTTAGATNGAATTTGGCGTGTNTATGTCTGGGTGTGGTTGTAATTTGCTNGCAGTACGTTCTCGTAGTTTAATTGTAAGCAAGCAATTGTACGACAAAATGTACTTAGGACAGTTAATTTGTTGGAAATTTCGGTGTG AATTATTTTTTAAAAAAAAAATAAAAAAAAA]
[+] EMBL AU089786             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTACTTGATTTGTTTATGTTTCTTCAGTTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTGTTCTCCAAGGAATTGCATGCAATGGATACTCTTTTAGATTGAATTTGGCGTGTCTATGTCTGGGTGTGGTTGTAATTTGCTTGCAGTACGTTCTCGTAGTTTAATTGTAAGCAAGCAATTGTACGACAAAATGTACTTAGGACAGTTAATTTGTTGGAAATTTCGGTGTGAAATTA                          ]


>consensus_15269#0 TAGTTGCAGACCATCACTTACGTAGCCCTGTGTGCAACGGCGCAAGTGCTTGTACGCTTT CAGCTAGCGTAGCATGGCTTCCAGGGCATTCCTCCTCGTGGCTCTAAACCTGGTCCTCTT CTTCACCGTGGCCAGCGCCTGCGGCAAGTACTGCCCGACGCCTTCGACGCCGTCGACGAC GCCATCGACGCCGTCCTACAACACCAAGTGCCCCAAGAACGCGCTCAAGTTCGCGGCGTG CGCCGACGTGCTGGGCCTCGTCAGCGCCGAGGTCGGCCAGCCGCCGTACGAGCCGTGCTG CGGCGTCCTCGGCGGCCTCGCCGACCTTGAGGCCGCCGTCTGTCTCTGCACCGCCATCAA GGCCAACGTGCTCGGCATCACCCTCGACATCCCCGTCAAGCTCAGCCTCCTCGTCAACTA CTGCGGCAAGAACGTCCCTAGTGGCTTCATCTGTGCTTAAGCTACGTAACGCGCGTACGG TGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATCGTTCGTTC TTGAGTGCCTGCATGCATATCGGTCGAGTCTTTACTTACTCTGTTATTAGTTCTGAATGT AGAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTACTTGATTTGTTTATGTTTCTTC AGTTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTGTTCTCCAAGGAATT GCATGCAATGGATACTCTTTTAGATTGAATTTGGCGTGTCTATGTCTGGGTGTGGTTGTA ATTTGCTTGCAGTACGTTCTCGTAGTTTAATTGTAAGCAAGCAATTGTACGACAAAATGT ACTTAGGACAGTTAATTTGTTGGAAATTTCGGTGTGAATTATTTTTTAAAAAAAAAATAA AAAAAAA



consensusID : consensus_15269#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 624
fasta sequence
                              [NTGTGCAAACGGCGCAAGTGCTTTGTTACGCTTTCAGTTAGCCGTAGCCATGGNNTTCCAGGCATTCCTCCTCGTGGCTCTAAACCTGGTCCTCTTCTTCACCGTGGCCCAGCCCTGCGGCAAGTACTGCCCGACGCCTTCGACGCCGTCGACGACGCCATCGACGCCGTCCTACAACACCAAGTGCCCCAAGAACGCGCTCAAGTTTCGCGCGTGCGCCGACGTGCTGGGCCTCGTCAGCGCCGAGGTCGGCCAGCCGCCGTACGAGCCGTGCTGCGGCGTCCTCGGCGGCCTCGCCGACCTTGAGG-CCGCCGTCTGTCTCTGCACCGCCATCAAGGCCAACGTGCTCGGCATCACCCTCGACATCCCCGTCAAGCTCAGCCTCCTCGTCAACTACTGCGGCAAGAACGTCCCTAGTGGCTTCATCTGTGCTTAAGCTACGTAACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATCGTTCGTTCTTGAGTGCCTGCATGCATATCGGTCGAGTCTTTACTTACTCTGTTATTAGTTCTGAATGTAGAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTAAAAAAAAAAA]

[+] EMBL AU032568             [NTGTGCAAACGGCGCAAGTGCTTTGTTACGCTTTCAGTTAGCCGTAGCCATGGNNTTCCAGGCATTCCTCCTCGTGGCTCTAAACCTGGTCCTCTTCTTCACCGTGGCCCAGCCCTGCGGCAAGTACTGCCCGACGCCTTCGACGCCGTCGACGACGCCATCGACGCCGTCCTACAACACCAAGTGCCCCAAGAACGCGCTCAAGTTTCGCGCGTGCGCCGACGTGCTGGGCCTCGTCAGCGCCGAGGTCGGCCAGCCGCCGTACGAGCCGTGCTGCGGCGTCCTCGGCGGCCTCGCCGACCTTGAGG CCGCCGTCTGTCTCTGCACCGCCATCAAGGCCAACGTGCTCGGCATCACCCTCGACATCCCCGTCAAGCTCAGCCTCCTCGTCAACTACTGCGGCAAGAACGTCCCTAGTGGCTTCATCTGTGCTTAAGCTACGTAACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATCGTTCGTTCTTGAGTGCCTGCATGCATATCGGTCGAGTCTTTACTTACTCTGTTATTAGTTCTGAATGTAGAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTAAAAAAAAAAA]
[+] EMBL AU032570             [                                                                                                                                                                                                                                                                                       gtgCCTCGGCGGCTTCGCCGACCTTGAGGCCCGCCNTCTGTCTCTGCACCGCCATCAAGGCCAACGTGCTCGGCATCACCCTCGACATCCCCGTCAAGCTCAGCCTCCTCGTCAACTA TGCGGCAAGAACNTCCCTAGTGGCTTCATCTGTGCTTAAGCTACNTAACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATCGTTCGTTCTTGAGTGCCTGCATGCATATCGGTCGAGTCTTTACTTACTCTGTTATTAGTTCTGAATGTAGAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTAAAAAAAAAAA]


>consensus_15269#1 NTGTGCAAACGGCGCAAGTGCTTTGTTACGCTTTCAGTTAGCCGTAGCCATGGNNTTCCA GGCATTCCTCCTCGTGGCTCTAAACCTGGTCCTCTTCTTCACCGTGGCCCAGCCCTGCGG CAAGTACTGCCCGACGCCTTCGACGCCGTCGACGACGCCATCGACGCCGTCCTACAACAC CAAGTGCCCCAAGAACGCGCTCAAGTTTCGCGCGTGCGCCGACGTGCTGGGCCTCGTCAG CGCCGAGGTCGGCCAGCCGCCGTACGAGCCGTGCTGCGGCGTCCTCGGCGGCCTCGCCGA CCTTGAGGCCGCCGTCTGTCTCTGCACCGCCATCAAGGCCAACGTGCTCGGCATCACCCT CGACATCCCCGTCAAGCTCAGCCTCCTCGTCAACTACTGCGGCAAGAACGTCCCTAGTGG CTTCATCTGTGCTTAAGCTACGTAACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCAT GCATGCAGCACGCATGCACGAACACATCGTTCGTTCTTGAGTGCCTGCATGCATATCGGT CGAGTCTTTACTTACTCTGTTATTAGTTCTGAATGTAGAACTGCTTCAGATATCAATCCA GCGAGTTAACTGTAAAAAAAAAAA



consensusID : consensus_15269#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 480
fasta sequence
                              [AGGAAGANCAAGGTANCCGACNNCCGGNCGANCCAAGAAGGNGAATCNTNGNGGCTTNGCCGACCTTGAAGCNCCGTNNGTNTCTGCACCGCCATCAAGGCCNAAGTGGNTCGGGCATCACCCNTCGACATCCCNNTCAAGATCAGCATCATCNTCAAANTANTGCGGCAAGNACGTCCCATAGTGGTTCATCTGTGCTTAAGCTACGTAACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATCGTTCGTTCTTGAGTGCCTGCATGCATATCGGTCGAGTCTTTACTTACTCTGTTATTAGTTCTGAATGTAGAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTACTTGATTTGTTTATGTTTCTTCAGTTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTGTTCTCCAAGGAATTGCATGCAATGGATACTCT]

[-] EMBL BE229331             [AGGAAGANCAAGGTANCCGACNNCCGGNCGANCCAAGAAGGNGAATCNTNGNGGCTTNGCCGACCTTGAAGCNCCGTNNGTNTCTGCACCGCCATCAAGGCCNAAGTGGNTCGGGCATCACCCNTCGACATCCCNNTCAAGATCAGCATCATCNTCAAANTANTGCGGCAAGNACGTCCCATAGTGGTTCATCTGTGCTTAAGCTACGTAACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATCGTTCGTTCTTGAGTGCCTGCATGCATATCGGTCGAGTCTTTACTTACTCTGTTATTAGTTCTGAATGTAGAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTACTTGATTTGTTTATGTTTCTTCAGTTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTGTTCTCCAAGGAATTGCATGCAATGGATACTCT]
[+] EMBL CB684347             [                                                                                                                                                                                                                 AACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATCGTTCGTTCTTGAGTGCCTGCATGCATATCGGTCGAGTCTTTACTTACTCTGTTATTAGTTCTGAATGTAGAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTACTTGATTTGTTTATGTTTCTTCAGTTAATCAGTTTCTGTCA                                                           ]


>consensus_15269#2 AGGAAGANCAAGGTANCCGACNNCCGGNCGANCCAAGAAGGNGAATCNTNGNGGCTTNGC CGACCTTGAAGCNCCGTNNGTNTCTGCACCGCCATCAAGGCCNAAGTGGNTCGGGCATCA CCCNTCGACATCCCNNTCAAGATCAGCATCATCNTCAAANTANTGCGGCAAGNACGTCCC ATAGTGGTTCATCTGTGCTTAAGCTACGTAACGCGCGTACGGTGTAACGACGTGCTAGCT TTGCATGCATGCAGCACGCATGCACGAACACATCGTTCGTTCTTGAGTGCCTGCATGCAT ATCGGTCGAGTCTTTACTTACTCTGTTATTAGTTCTGAATGTAGAACTGCTTCAGATATC AATCCAGCGAGTTAACTGTACTTGATTTGTTTATGTTTCTTCAGTTAATCAGTTTCTGTC ATCATTTGGTCAATTAATGGAGGTTTTGTTCTCCAAGGAATTGCATGCAATGGATACTCT



consensusID : consensus_15269#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 344
fasta sequence
                              [CACGCTTTCCNCTTGAAATGTTAANGNAAACTGGCTTTCAGAATTATTCAATTCCCAGGCGAGTTAAACCTGTACTTGATTTGTTTATGTTTCTTCAGTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTGTTCTCCAAGGAATTCCATCCAATGGATACTCTTTTAGATTGAATTTGGCGTGTCTATGTCTGGGTGTGGTTGTCAATTTGCTTGCAGTACGTTCTCGTAGTTTAATTGTAAGCAAGCAATTGTACGACCAAAATGTACTTAGGACAGTTAATTTGTTGGAAATTTCGGTGTGAATTATTTTTTAAAATTTAAAAAAAAAAAAA]

[+] EMBL AU089787             [CACGCTTTCCNCTTGAAATGTTAANGNAAACTGGCTTTCAGAATTATTCAATTCCCAGGCGAGTTAAACCTGTACTTGATTTGTTTATGTTTCTTCAGTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTGTTCTCCAAGGAATTCCATCCAATGGATACTCTTTTAGATTGAATTTGGCGTGTCTATGTCTGGGTGTGGTTGTCAATTTGCTTGCAGTACGTTCTCGTAGTTTAATTGTAAGCAAGCAATTGTACGACCAAAATGTACTTAGGACAGTTAATTTGTTGGAAATTTCGGTGTGAATTATTTTTTAAAATTTAAAAAAAAAAAAA]


>consensus_15269#3 CACGCTTTCCNCTTGAAATGTTAANGNAAACTGGCTTTCAGAATTATTCAATTCCCAGGC GAGTTAAACCTGTACTTGATTTGTTTATGTTTCTTCAGTAATCAGTTTCTGTCATCATTT GGTCAATTAATGGAGGTTTTGTTCTCCAAGGAATTCCATCCAATGGATACTCTTTTAGAT TGAATTTGGCGTGTCTATGTCTGGGTGTGGTTGTCAATTTGCTTGCAGTACGTTCTCGTA GTTTAATTGTAAGCAAGCAATTGTACGACCAAAATGTACTTAGGACAGTTAATTTGTTGG AAATTTCGGTGTGAATTATTTTTTAAAATTTAAAAAAAAAAAAA



consensusID : consensus_15269#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 323
fasta sequence
                              [CAACTCACTGCGGNAAGAACGTCCCTAGTGGCTTCATCTGTGCTTAAGCTACGTAACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATTCGTTCGTTACTTGANTGCCTGCATGCATATCGGTCGAGTATTTACTTACTNTGTTATTAGTTCTGAATGTAGNACTGCTTNAGATATCAANCCAGCGAGTTAACTGTACTTGATTTGTTTATGTTTCTTCAGTTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTGTTCTCCAAAAACAAAAAAAAAAAAAAAA]

[+] EMBL AU029444             [CAACTCACTGCGGNAAGAACGTCCCTAGTGGCTTCATCTGTGCTTAAGCTACGTAACGCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATTCGTTCGTTACTTGANTGCCTGCATGCATATCGGTCGAGTATTTACTTACTNTGTTATTAGTTCTGAATGTAGNACTGCTTNAGATATCAANCCAGCGAGTTAACTGTACTTGATTTGTTTATGTTTCTTCAGTTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTGTTCTCCAAAAACAAAAAAAAAAAAAAAA]


>consensus_15269#4 CAACTCACTGCGGNAAGAACGTCCCTAGTGGCTTCATCTGTGCTTAAGCTACGTAACGCG CGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACATTC GTTCGTTACTTGANTGCCTGCATGCATATCGGTCGAGTATTTACTTACTNTGTTATTAGT TCTGAATGTAGNACTGCTTNAGATATCAANCCAGCGAGTTAACTGTACTTGATTTGTTTA TGTTTCTTCAGTTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTGTTCTC CAAAAACAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15269#2      ------------------------------------------------------------
consensus_15269#4      ------------------------------------------------------------
consensus_15269#1      ---------------------------NTGTGCA-AACGGCGCAAGTGCTTTGTTACGCT 32
consensus_15269#0      TAGTTGCAGACCATCACTTACGTAGCCCTGTGTGCAACGGCGCAAGTGCTTG--TACGCT 58
consensus_15269#3      ------------------------------------------------------------
                                                                                   

consensus_15269#2      ------------------------------------------------------------
consensus_15269#4      ------------------------------------------------------------
consensus_15269#1      TTCAGTTAGCCGTAGCCATGGNNTTCCAGGCATTCCTCCTCGTGGCTCTAAACCTGGTCC 92
consensus_15269#0      TTCAGCTAGC-GTAGC-ATGGCTTCCAGGGCATTCCTCCTCGTGGCTCTAAACCTGGTCC 116
consensus_15269#3      ------------------------------------------------------------
                                                                                   

consensus_15269#2      ------------------------------------------------------------
consensus_15269#4      ------------------------------------------------------------
consensus_15269#1      TCTTCTTCACCGTGGCCCAGCCCTGCGGCAAGTACTGCCCGACGCCTTCGACGCCGTCGA 152
consensus_15269#0      TCTTCTTCACCGTGGCCAGCGCCTGCGGCAAGTACTGCCCGACGCCTTCGACGCCGTCGA 176
consensus_15269#3      ------------------------------------------------------------
                                                                                   

consensus_15269#2      ------------------------------------------------------------
consensus_15269#4      ------------------------------------------------------------
consensus_15269#1      CGACGCCATCGACGCCGTCCTACAACACCAAGTGCCCCAAGAACGCGCTCAAGTTTCGCG 212
consensus_15269#0      CGACGCCATCGACGCCGTCCTACAACACCAAGTGCCCCAAGAACGCGCTCAAGTTCGCGG 236
consensus_15269#3      ------------------------------------------------------------
                                                                                   

consensus_15269#2      ------------------------AGGAAGANCAAGGTANCCGACNNCCGGNCGANCCAA 36
consensus_15269#4      ------------------------------------------------------------
consensus_15269#1      CGTGCGCCGACGTGCTGGGCCTCGTCAGCGCCGAGGTCGGCCAGCCGCCGTACGAGCCGT 272
consensus_15269#0      CGTGCGCCGACGTGCTGGGCCTCGTCAGCGCCGAGGTCGGCCAGCCGCCGTACGAGCCGT 296
consensus_15269#3      ----------------------------------------------------CACGCTTT 8
                                                                                   

consensus_15269#2      GAAGGNGAATCNTNGN-GGCTTNGCCGACCTTGAAGCN-CCGTNNGTNTCTGCACCGCCA 94
consensus_15269#4      ------------------------------------------------------------
consensus_15269#1      GCTGCGGCGTCCTCGGCGGCCTCGCCGACCTTGAGGCCGCCGTCTGTCTCTGCACCGCCA 332
consensus_15269#0      GCTGCGGCGTCCTCGGCGGCCTCGCCGACCTTGAGGCCGCCGTCTGTCTCTGCACCGCCA 356
consensus_15269#3      CCNCTTGAAATGTTAA--NGNAAACTGGCTTTCAGAAT--TATTCAATTCCCAGGCGAGT 64
                                                                                   

consensus_15269#2      TCAAGGCCNAAGTGGNTCGGGCATCACCCNTCGACATCCCNNTCAAGATCAGCATCATCN 154
consensus_15269#4      ------------------------------------------------------------
consensus_15269#1      TCAAGGCCAACGTGCTC--GGCATCACCCT-CGACATCCCCGTCAAGCTCAGCCTCCTCG 389
consensus_15269#0      TCAAGGCCAACGTGCTC--GGCATCACCCT-CGACATCCCCGTCAAGCTCAGCCTCCTCG 413
consensus_15269#3      TAAACCTGTACTTGATTTGTTTATGTTTCTTCAGTAATCAGTTTCTG-TCATCATT-TGG 122
                                                                                   

consensus_15269#2      TCAAANTANTGCGGCAAGNACGTCCCATAGTGG-TTCATCTG-TGCTTAAGCTACGTAAC 212
consensus_15269#4      -CAACTCACTGCGGNAAGAACGTCCC-TAGTGGCTTCATCTG-TGCTTAAGCTACGTAAC 57
consensus_15269#1      TCAACT-ACTGCGGCAAGAACGTCCC-TAGTGGCTTCATCTG-TGCTTAAGCTACGTAAC 446
consensus_15269#0      TCAACT-ACTGCGGCAAGAACGTCCC-TAGTGGCTTCATCTG-TGCTTAAGCTACGTAAC 470
consensus_15269#3      TCAATTAATGGAGGTTTTGTTCTCCA--AGGAATTCCATCCAATGGATACTCT-TTTAGA 179
                        ***   *  * **        ***   **    * ****   **  **  **   **  

consensus_15269#2      GCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACA 272
consensus_15269#4      GCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACA 117
consensus_15269#1      GCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACA 506
consensus_15269#0      GCGCGTACGGTGTAACGACGTGCTAGCTTTGCATGCATGCAGCACGCATGCACGAACACA 530
consensus_15269#3      TTGAATTTGGCGTGTCTATGT-CTGGGTGTGGTTGT---CAATTTGCTTGCA-GTACGTT 234
                         *  *  ** **  * * ** ** * * **  **    **    ** **** * **   

consensus_15269#2      T-CGTTCGTT-CTTGAGTGCCTGCATGCATATCGGTCGAGTCTTTACTTACT-CTGTTA- 328
consensus_15269#4      TTCGTTCGTTACTTGANTGCCTGCATGCATATCGGTCGAGTATTTACTTACT-NTGTTA- 175
consensus_15269#1      T-CGTTCGTT-CTTGAGTGCCTGCATGCATATCGGTCGAGTCTTTACTTACT-CTGTTA- 562
consensus_15269#0      T-CGTTCGTT-CTTGAGTGCCTGCATGCATATCGGTCGAGTCTTTACTTACT-CTGTTA- 586
consensus_15269#3      CTCGTAGTTTAATTGTAAGCAAGCAATTGTA-CGACCAAA-ATGTACTTAGGACAGTTAA 292
                         ***   **  ***   **  ***    ** **  * *   * ******     **** 

consensus_15269#2      TTAGTTCTGAATGTAGAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTACTTGATTT 388
consensus_15269#4      TTAGTTCTGAATGTAGNACTGCTTNAGATATCAANCCAGCGAGTTAACTGTACTTGATTT 235
consensus_15269#1      TTAGTTCTGAATGTAGAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTAAAAAAAAA 622
consensus_15269#0      TTAGTTCTGAATGTAGAACTGCTTCAGATATCAATCCAGCGAGTTAACTGTACTTGATTT 646
consensus_15269#3      TTTGTTGGAAATTTCGGTGTGAATTATTTTTTAA------AATTTAAAAAAAAAAAAA-- 344
                       ** ***   *** * *   **  * *  * * **       * ****    *    *   

consensus_15269#2      GTTTATGTTTCTTCAGTTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTG 448
consensus_15269#4      GTTTATGTTTCTTCAGTTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTG 295
consensus_15269#1      AA---------------------------------------------------------- 624
consensus_15269#0      GTTTATGTTTCTTCAGTTAATCAGTTTCTGTCATCATTTGGTCAATTAATGGAGGTTTTG 706
consensus_15269#3      ------------------------------------------------------------
                                                                                   

consensus_15269#2      TTCTCCAAGGAATTGCATGCAATGGATACTCT---------------------------- 480
consensus_15269#4      TTCTCCAAAAACAAAAAAAAAAAAAAAA-------------------------------- 323
consensus_15269#1      ------------------------------------------------------------
consensus_15269#0      TTCTCCAAGGAATTGCATGCAATGGATACTCTTTTAGATTGAATTTGGCGTGTCTATGTC 766
consensus_15269#3      ------------------------------------------------------------
                                                                                   

consensus_15269#2      ------------------------------------------------------------
consensus_15269#4      ------------------------------------------------------------
consensus_15269#1      ------------------------------------------------------------
consensus_15269#0      TGGGTGTGGTTGTAATTTGCTTGCAGTACGTTCTCGTAGTTTAATTGTAAGCAAGCAATT 826
consensus_15269#3      ------------------------------------------------------------
                                                                                   

consensus_15269#2      ------------------------------------------------------------
consensus_15269#4      ------------------------------------------------------------
consensus_15269#1      ------------------------------------------------------------
consensus_15269#0      GTACGACAAAATGTACTTAGGACAGTTAATTTGTTGGAAATTTCGGTGTGAATTATTTTT 886
consensus_15269#3      ------------------------------------------------------------
                                                                                   

consensus_15269#2      ---------------------
consensus_15269#4      ---------------------
consensus_15269#1      ---------------------
consensus_15269#0      TAAAAAAAAAATAAAAAAAAA 907
consensus_15269#3      ---------------------
                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)