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Oryza sativa
cluster # 15270 cluster # 15270       Sequences # 21       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_15270#0 length = 782 sequences # 16  
consensus_15270#1 length = 399 sequences # 3  
consensus_15270#2 length = 298 sequences # 2  

consensusID : consensus_15270#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 16
consensus length = 782
fasta sequence
                              [GAGTAGAAAACAAAGCATTCAAGCAACTAGGTATCTAGCTAAGCAGTGGTGTGATCAGTAGGAAGTTGCAGGTGGGGGATATATCACCAATGGCTCCGGTCAGCATCTCCGACGAGCGCGCCGTCTCGGTGTCGGCGGAGCGGGTGTGGAAGGTCTTCTCCGACGCGCCCGCCATGCCCAAGGTTTGTGCCGGCTTCATCGACGCCATTGAGGTCGAGGGGGATGGCGGGGCGGGCACTGTCACCACCATGAAGCTCAACCCTGCTGTGGATGATGGGGGGTCATTCAAAACACGTGTGGTGGCACGTGACAACGCAGCTCACATTATCAAGTCA-GAGGTTCTGGATGTGCCGGCCGG-AAGTAAGGTGGGCAAGCTCAAGTCGCACGTGACAGAGACGAAGATCGAGGCCGCCGGTGCCGGCTCTTGCTTGG-CCA-AGATAAACGTGGAGTATGAGCTCGAGGA-CGG-C-GGCTC-ACTGTCG-CCGGAGAAGGAGAAGCTCATCCTCGACGGCTACTTCGGCATGCTCAAGATGATCGAGGA-CTACCTC-GTCGCTCA-CCCTA-CCGAGTATGCTTAAAAATTGTCATAAACCAAAATAATATACATCCATCT-CCGTATTGCTGCTTCCTGATAATTAAATAATGTGAGCCACGACAAATCCAATCTTTTGTGGTGTTTGATTTTG-TGAGAGTGATTTGTGTTTGAGGTTATGTAAGAAATAAATCATAATTGTGATCGTGTTCTAAAAAAAAAAAAATGAACATGTTTGCTGCTGGGAAAAAAAAAA]

[+] EMBL CF300061             [GAGTAGAAAACAAAGCATTCAAGCAACTAGGTATCTAGCTAAGCAGTGGTGTGATCAGTAGGAAGTTGCAGGTGGGGGATATATCACCAATGGCTCCGGTCAGCATCTCCGACGAGCGCGCCGTCTCGGTGTCGGCGGAGCGGGTGTGGAAGGTCTTCTCCGACGCGCCCGCCATGCCCAAGGTTTGTGCCGGCTTCATCGACGCCATTGAGGTCGAGGGGGATGGCGGGGCGGGCACTGTCACCACCATGAAGCTCAACCCTGCTGTGGATGATGGGGGGTCATTCAAAACACGTGTGGTGGCACGTGACAACGCAGCTCACATTATCAAGTCA GAGGTTCTGGATGTGCCGGCCGG AAGTAAGGTGGGCAAGCTCAAGTCGCACGTGACAGAGACGAAGATCGAGGCCGCCGGTGCCGGCTCTTGCTTGG CCA AGATAAACGTGGAGTATGAGCTCGAGGA CGG C GGCTC ACTGTCG CCGGAGAAGGAGAAGCTCATCCTCGACGGCTACTTCGGCATGCTCAAGATGATCGAGGA CTACCTC GTCGCTCA CCCTA CCGAGTATGCTTAAAAATTGTCATAAACCAAAATAATATACATCCATCT CCGTATTGCTGCTTCCTG                                                                                                                                                              ]
[+] EMBL AK061606             [                  TCAAGCAACTAGGTATCTAGCTAAGCAGTGGTGTGATCAGTAGGAAGTTGCAGGTGGGGGATATATCACCAATGGCTCCGGTCAGCATCTCCGACGAGCGCGCCGTCTCGGTGTCGGCGGAGCGGGTGTGGAAGGTCTTCTCCGACGCGCCCGCCATGCCCAAGGTTTGTGCCGGCTTCATCGACGCCATTGAGGTCGAGGGGGATGGCGGGGCGGGCACTGTCACCACCATGAAGCTCAACCCTGCTGTGGATGATGGGGGGTCATTCAAAACACGTGTGGTGGCACGTGACAACGCAGCTCACATTATCAAGTCA GAGGTTCTGGATGTGCCGGCCGG AAGTAAGGTGGGCAAGCTCAAGTCGCACGTGACAGAGACGAAGATCGAGGCCGCCGGTGCCGGCTCTTGCTTGG CCA AGATAAACGTGGAGTATGAGCTCGAGGA CGG C GGCTC ACTGTCG CCGGAGAAGGAGAAGCTCATCCTCGACGGCTACTTCGGCATGCTCAAGATGATCGAGGA CTACCTC GTCGCTCA CCCTA CCGAGTATGCTTAAAAATTGTCATAAACCAAAATAATATACATCCATCT CCGTATTGCTGCTTCCTGATAATTAAATAATGTGAGCCACGACAAATCCAATCTTTTGTGGTGTTTGATTTTG TGAGAGTGATTTGTGTTTGAGGTTATGTAAGAAATAAATCATAATTGTGATCGTGTTCTATATGTGTGCAAATGAACAT                       ]
[+] EMBL OS1321886            [                              GTATCTAGCTAAGCAGTGGTGTGATCAGTAGGAAGTTGCAGGTGGGGGATATATCACCAATGGCTCCGGTCAGCATCTCCGACGAGCGCGCCGTCTCGGTGTCGGCGGAG GGGTGTGGAAGGTCTTCTCCGACGCGCCCGCCATGCCCAAGGTTTGTGCCGGCTTCATCGACGNCATTGAGGTCGAGGGGGATGNCGNGGCGNGCACTNTCACCACCATGAAGCTCAACCCTGNTGTGGATGATGTGGGGTCATTCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL CA999048             [                                ATCTAGCTAAGCAGTGGTGTGATCAGTAGGAAGTTGCAGGTGGGGGATATATCACCAATGGCTCCGGTCAGCATCTCCGACGAGCGCGCCGTCTCGGTGTCGGCGGAGCGGGTGTGGAAGGTCTTCTCCGACGCGCCCGCCATGCCCAAGGTTTGTGCCGGCTTCATCGACGCCATTGAGGTCGAGGGGGATGGCGGGGCGGGCACTGTCACCACCATGAAGCTCAACCCTGCTGTGGATGATGGGGGGTCATTCAAAACACGTGTGGTGGCACGTGACAACGCAGCTCACATTATCAAGTCA GAGGTTCTGGATGTGCCGGCCGG AAGTAAGGTGGGCAAGCTCAAGTCGCACGTGACAGAGACGAAGATCGAGGCCGCCGGTGCCGGCTCTTGCTTGG CCA AGATAAACGTGGAGTATGAGCTCGAGGA CGG C GGCTC ACTGTCG CCGGAGAAGGAGAAGCTCATCCTCGACGGCTACTTCGGCATGCTCAAGATGATCGAGGA CTACCTC GTCGCTCA CCCTA CCGAGTATGCTTAAAAATTGTCATAAACCAAAATAATATACATCCATCT CCGTATTGCTGCTTCCTGATAATTAAATAA                                                                                                                                                  ]
[+] EMBL CA999843             [                                         AGCAGTGGTGTGATCAGTAGGAAGTTGCAGGTGGGGGATATATCACCAATGGCTCCGGTCAGCATCTCCGACGAGCGCGCCGTCTCGGTGTCGGCGGAGCGGGTGTGGAAGGTCTTCTCCGACGCGCCCGCCATGCCCAAGGTTTGTGCCGGCTTCATCGACGCCATTGAGGTCGAGGGGGATGGCGGGGCGGGCACTGTCACCACCATGAAGCTCAACCCTGCTGTGGATGATGGGGGGTCATTCAAAACACGTGTGGTGGCACGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CA997924             [                                          GCAGTGGTGTGATCAGTAGGAAGTTGCAGGTGGGGGATATATCACCAATGGCTCCGGTCAGCATCTCCGACGAGCGCGCCGTCTCGGTGTCTGCGGAGCGGGTGTGGAAGGTCTTCTCCGACGCGCCCGCCATGCCCAAGGTTTGTGCTTGCTTCATCTATTTCATTGAGGTCGAGGGGGATGGCGGGGCGGGCACTGTCACCACCATGAAGCTCAACCCTGCTGTGGATGATGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CA759435             [                                                                                     ACCAATGGCTCCGGTCAGCATCTCCGACGAGCGCNCCGTCTCGGTGTCGGCGGAGCGGGTGTGGAAGGTC TCTCCGACGCGCCCGCCATGCCCAAGGTTTGTGCCGGCTTCATCGACGCCATTGAGGTCGAGGGGGATGGCGGGGCGGGCACTGTCACCACCATGAAGCTCAACCCTGCTGTGGATGATGGGGGGTCATTCAAAACACGTGTGGTGACACGTGACAACGCAGCTCACATTATCAAGTCA GAGGTTCTGGATGTGCCGGCCGG AAGTAAGGTGGGCAAGCTCAAGTCGCACGTGACAGAGACGAAGATCGAGGCCGCCGGTGCCGGCTCTTGCTTGG CCA AGATAAACGTGGAGTATGAGCTCGAGGA CGG C GGCTC GCTGTCG CCGGAGAAGGAGAAGCTCATCCTCGACGGCTACTTCGGCATGCTCAAGATGATCGAGGA CTACCTC GTCGCTCA CCCTA CCGAGTATGCTTAAAAATTGTCATAAACCAAAATAATATACATCCATCT CCGTATTGCTGCTTCCTGATAATTAAATAATGTGAGCCCCGACAAATCCAATCTTTTGTGGTGTTTGATTTTG TGAGAGTGATTTATGTTTGAGGTTATGTAAGAAATAAATCATAATTGTGATCGTGTTCAAAAAAAAAAAAAAaaa                           ]
[-] EMBL CA759436             [                                                                                     ACCAATGGCTCCGGTCAGCATCTCCGACGAGCGCNCCGTCTCGGTGTCGGCGGAGCGGGTGTGGAAGGTC TCTCCGACGCGCCCGCCATGCCCAAGGTTTGTGCCGGCTTCATCGACGCCATTGAGGTCGAGGGGGATGGCGGGGCGGGCACTGTCACCACCATGAAGCTCAACCCTGCTGTGGATGATGGGGGGTCATTCAAAACACGTGTGGTGACACGTGACAACGCAGCTCACATTATCAAGTCA GAGGTTCTGGATGTGCCGGCCGG AAGTAAGGTGGGCAAGCTCAAGTCGCACGTGACAGAGACGAAGATCGAGGCCGCCGGTGCCGGCTCTTGCTTGG CCA AGATAAACGTGGAGTATGAGCTCGAGGA CGG C GGCTC GCTGTCG CCGGAGAAGGAGAAGCTCATCCTCGACGGCTACTTCGGCATGCTCAAGATGATCGAGGA CTACCTC GTCGCTCA CCCTA CCGAGTATGCTTAAAAATTGTCATAAACCAAAATAATATACATCCATCT CCGTATTGCTGCTTCCTGATAATTAAATAATGTGAGCCCCGACAAATCCAATCTTTTGTGGTGTTTGATTTTG TGAGAGTGATTTATGTTTGAGGTTATGTAAGAAATAAATCATAATTGTGATCGTGTTCAAAAAAAAAAAAAAaaa                           ]
[+] EMBL BI804678             [                                                                                                                                                                                                                                                         TGAAGCTCAACCCT CTGTGGATGATGGGGGTTCA TCCAAACACGTGTGGTGGCACGTGACAAC CAGCTCACATTATCAAGTCA GAGGTTCTGGATGT CC GCCGG AAGTAAGGT GGCAAGCTCAAGTCGCACGTGACAGAGACGAAGATCGA GCCCCCGGTGCCGGCTCTTGCTTGGCCCACAGATAAACGTGGAGTATGAGCTCGAGGACCGGCC GGCTCGCCTGTCGCCCGGAGAAGGAGAAGCTCATCCTCGACGGCTACTTCGGCATGCTCAAGATGATCGAGGACCTACCTC GTCGCTCACCCCTACCCGAGTATGCTTAAAAATTGTCATAAACCCAAATAATATACATCCATCTCCCGTATTGCTGCTTCCTGATAATTAAATAATGTGAGCCCCGAC AATCCCATCTTTTGTGGTGTTTGATTTTG TGAGAGTGATTTATGTTTGAGGTTATGTAAGAAATAAATCATAATTGTGATCGTGTTCTAAAAAAAAAA                                 ]
[+] EMBL BI812364             [                                                                                                                                                                                                                                                               TCAACCCTGCTGTGGATGATGGGGGGTCATTC AAACACGTGTGGTGGCACGTGACAACGCAGCTCACATTATCAAGTCACGAGGTTCTGGATGTGCCGGCCGG AAGTAAGGTGGGCAAGCTCAAGTCGCACGTGACAGAGACGAAGATCGAGGCCGCCGGTGCCGGCTCTTGCTTGG CCC AGATAAACGTGGAGTATGAGCTCGAGGA CGG C GGCTC GCTGTCG CCGGAGAAGGAGAAGCTCATCCTCGACGGCTACTTCGGCATGCTCAAGATGATCGAGGA CTACCTC GTCGCTCA CCCTA CCGAGTATGCTTAAAAATTGTCATAAACCCAAATAATATACATCCATCT CCGTATTGCTGCTTCCTGATAATTAAATAATGTGAGCCACGACAAATCCAATCTTTTGTGGTGTTTGATTTTG TGAGAGTGATTTGTGTTTGAGGTTATGTAAGAAATAAATCATAATTGTGATCGTGTTCTATATGTGTGCAAATGAACATGTTTGCTGCTGGGAAAAAAAAAA]
[+] EMBL BI813010             [                                                                                                                                                                                                                                                                                              tcAAACACGTGTGGTGGCACGTGACAAC CAGCTCACATTATCAAGTCA GAGGTTCTGGATGTGCC GCCGG AAGTAAGGT GGCAAGCTCAAGTCGCACGTGACAGAGACGAAGATCGA GCC CCGGTGCCGGCTCTTGCTTGG CCA AGATAAACGTGGAGTATGAGCTCGAGGA CGG C GGCTC GCTGTC  CCGGAGAAGGAGAAGCTCATCCTCGACGGCTACTTCGGCATGCTCAAGATGATCGAGGA CTACCTCTGTCGCTCA CCCTA CCGAGTATGCTTAAAAATTGTCATAAACC AAATAATATACATCCATCT CCGTATTGCTGCTTCCTGATAATTAAATAATGTGAGCC CGACAAATCC ATCTTTTGTGGTGTTTGATTTTG TGAGAGTGATTTGTGTTTGAGGTTATGTAAGAAATAAATCATAATTGTGATCGTGTTCAAAAAAAA                                    ]
[+] EMBL AU223430             [                                                                                                                                                                                                                                                                                                                          cCAGCTCCCATTATCAAGTCA AAGGTTCTGGATGT CCCGCCGGAAAGTAAAGTGGCCAAGCTCAAGTCGCACGTGCCAAAG CGAAGATCGAGNCCGCCGGTGCCGGCTCTTGCTTGG CCA AGATAAACGTGGAGTATGAGCTCGAGGA CGN CGGGCTC ACTGTCG CCGGAGAAGGAGAAGCTCATCCTCGNCGGCTACTTCGGCATGCTCAAGATGATCGAGGA CTACCTC GTCGCTCA CCCTA CCGAGTATGCTTAAAAATTGTCATAAACCAAAATAATATACATCCATCT CCGTATTGCTGCTTCCTGATAATTAAATAATGTGAGCCACGACAAATCCAATCTTTTGTGGTGTTTGATTTTG TGAGAGTGATTTGTGTTTGAGGTTATGTAAGAAATAAATCATAATTGTGATCGTGTTCTAAAAA                                      ]
[+] EMBL CA998412             [                                                                                                                                                                                                                                                                                                                                                 AGGTTCTGGATGTGCCGGCCGG AAGTAAGGTGGGCAAGCTCAAGTCGCACGTGACAGAGACGAAGATCGAGGCCGCCGGTGCCGGCTCTTGCTTGG CCA AGATAAACGTGGAGTATGAGCTCGAGGA CGG C GGCTC ACTGTCG CCGGAGAAGGAGAAGCTCATCCTCGACGGCTACTTCGGCATGCTCAAGATGATCGAGGA CTACCTC GTCGCTCA CCCTA CCGAGTATGCTTAAAAATTGTCATAAACCAAAATAATATACATCCATCT CCGTATTGCTGCTTCCTGATAATTAAATAATGTGAGCCACGACAAATCCAATCTTTTGTGGTGTTTGATTTTG TGAGAGTGATTTGTGTTTGAGGTTATGTAAGAAATAAATCATAATTGTGATCGTGTTCTAAAAAAAAAAA                                ]
[+] EMBL CA998218             [                                                                                                                                                                                                                                                                                                                                                 AGGTTCTGGATGTGCCGGCCGG AAGTAAGGTGGGCAAGCTCAAGTCGCACGTGACAGAGACGAAGATCGAGGCCGCCGGTGCCGGCTCTTGCTTGG CCA AGATAAACGTGGAGTATGAGCTCGAGGA CGG C GGCTC ACTGTCG CCGGAGAAGGAGAAGCTCATCCTCGACGGCTACTTCGGCATGCTCAAGATGATCGAGGA CTACCTC GTCGCTCA CCCTA CCGAGTATGCTTAAAAATTGTCATAAACCAAAATAATATACATCCATCT CCGTATTGCTGCTTCCTGATAATTAAATAATGTGAGCCACGACAAATCCAATCTTTTGTGGTGTTTGATTTTG TGAGAGTGATTTGTGTTTGAGGTTATGTAAGAAATAAATCATAATTGTGATCGTGTTCTAAAAAAAAAAA                                ]
[-] EMBL CF300062             [                                                                                                                                                                                                                                                                                                                                                                                    CAAGCTCAAGTCGCACGTGACAGAGACGAAGATCGAGGCCGCCGGTGCCGGCTCTTGCTTGG CCA AGATAAACGTGGAGTATGAGCTCGAGGA CGG C GGCTC ACTGTCG CCGGAGAAGGAGAAGCTCATCCTCGACGGCTACTTCGGCATGCTCAAGATGATCGAGGA CTACCTC GTCGCTCA CCCTA CCGAGTATGCTTAAAAATTGTCATAAACCAAAATAATATACATCCATCT CCGTATTGCTGCTTCCTGATAATTAAATAATGTGAGCCACGACAAATCCAATCTTTTGTGGTGTTTGATTTTG TGAGAGTGATTTGTGTTTGAGGTTATGTAAGAAATAAATCATAATTGTGATGGGGTTCAAAAAAAAA                                   ]
[+] EMBL BI802361             [                                                                                                                                                                                                                                                                                                                                                                                                                       AGGCCGCCGGTGCCGGCTCTTGCTTGG CCA AGATAAACGTGGAGTATGAGCTCGAGGA CGG C GGCTC GCTGTCG CCGGAGAAGGAGAAGCTCATCCTCGACGGCTACTTCGGCATGCTCAAGATGATCGAGGA CTACCTC GTCGCTCA CCCTA CCGAGTATGCTTAAAAATTGTCATAAACCCAAATAATATACATCCATCT CCGTATTGCTGCTTCCTGATAATTAAATAATGTGAGCCCCGAC AATCC ATCTTTTGTGGTGTTTGATTTTGCTGAGAGTGATTTATGTTTGAGGTTATGTAAGAAATAAATCATAATTGTGATCGTGTTCACAAAAAAAAAA                                ]


>consensus_15270#0 GAGTAGAAAACAAAGCATTCAAGCAACTAGGTATCTAGCTAAGCAGTGGTGTGATCAGTA GGAAGTTGCAGGTGGGGGATATATCACCAATGGCTCCGGTCAGCATCTCCGACGAGCGCG CCGTCTCGGTGTCGGCGGAGCGGGTGTGGAAGGTCTTCTCCGACGCGCCCGCCATGCCCA AGGTTTGTGCCGGCTTCATCGACGCCATTGAGGTCGAGGGGGATGGCGGGGCGGGCACTG TCACCACCATGAAGCTCAACCCTGCTGTGGATGATGGGGGGTCATTCAAAACACGTGTGG TGGCACGTGACAACGCAGCTCACATTATCAAGTCAGAGGTTCTGGATGTGCCGGCCGGAA GTAAGGTGGGCAAGCTCAAGTCGCACGTGACAGAGACGAAGATCGAGGCCGCCGGTGCCG GCTCTTGCTTGGCCAAGATAAACGTGGAGTATGAGCTCGAGGACGGCGGCTCACTGTCGC CGGAGAAGGAGAAGCTCATCCTCGACGGCTACTTCGGCATGCTCAAGATGATCGAGGACT ACCTCGTCGCTCACCCTACCGAGTATGCTTAAAAATTGTCATAAACCAAAATAATATACA TCCATCTCCGTATTGCTGCTTCCTGATAATTAAATAATGTGAGCCACGACAAATCCAATC TTTTGTGGTGTTTGATTTTGTGAGAGTGATTTGTGTTTGAGGTTATGTAAGAAATAAATC ATAATTGTGATCGTGTTCTAAAAAAAAAAAAATGAACATGTTTGCTGCTGGGAAAAAAAA AA



consensusID : consensus_15270#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 399
fasta sequence
                              [CGGTTCTTGCTTGGCCAAGATAAACGTGGAGTATGAGCTCGAGGACGGCGGCTCACTGTCCCCGGAAAAGGAGAAGTTCATCCTCGACGGTTATTTCGGCATGCTCAAGATGATCGAGGATTCCCTCGTCGCTCCCCCTACCGAGTATGCTTAAAAATTGTCATAACCCAAAATAATATCCACCCATCCCCGTATTGCTGCTTCCTGATAATTAAATAATGTGACCCCCGCCAAATCCAATCTTTTGTGGTGTTTGATTTTGTGAGAGTGATTTGTGTTTGAGGTTATGTAAGAAATAAATCATAATTGTGATCGTGTTCTATATGTGTGCAAATGAACATGTTTGCTGCTGGGAGATCCCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CF303985             [CGGTTCTTGCTTGGCCAAGATAAACGTGGAGTATGAGCTCGAGGACGGCGGCTCACTGTCCCCGGAAAAGGAGAAGTTCATCCTCGACGGTTATTTCGGCATGCTCAAGATGATCGAGGATTCCCTCGTCGCTCCCCCTACCGAGTATGCTTAAAAATTGTCATAACCCAAAATAATATCCACCCATCCCCGTATGGCTGCTTCCTGATAATTAAATAATGTGACCCCCGCCAAATCCAATCTTTTGTGGTGTTTGATTTTGTGAGAGTGATTTGTGTTTGAGGTTATGTAAGAAATAAATCATAATTGTGATCGTGTTCTATATGTGTGCAAATGAACATGTTTGCTGCTGGGAGATCCCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF303974             [                                                                     GGAGAAGTTCATCCTCGACGGTTACTTCGGCATGCTCAAGATGATCGAGGATTCCCTCGTCGCTCCCCCTCCCGAGTATGCTTAAAAATTGTCATAACCCAAAATAATATCCACCCATCCCCGTATTGCTGCTTCCTGATAATTAAATAATGTGACCCCCGCCAAATCCAATCTTTTGTGGTGTTTGATTTTGTGAGAGTGATTTGTGTTTGAGGTTATGTAAGAAATAAATCATAATTGTGATCGTGTTCTATATGTGTGCAAATGAACATGTTTGCTGCTGGGAGTTCCCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF303903             [                                                                                                         CAAGATGATCGAGGATTCCCTCGTCGCTCCCCCTACCGAGTATGCTTAAAAATTGTCATAACCCAAAATAATATCCATCCATCCCCGTATTGCTGCTTCCTGATAATTAAATAATGTGAGCCCCGCCAAATCCAATCTTTTGTGGTGTTTGATTTTGTGAGAGTGATTTGTGTTTGAGGTTATGTAAGAAATAAATCATAATTGTGATCGTGTTCTATATGTGTGCAAATGAACATGTTTGCTGCTGGGAGATCCCTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_15270#1 CGGTTCTTGCTTGGCCAAGATAAACGTGGAGTATGAGCTCGAGGACGGCGGCTCACTGTC CCCGGAAAAGGAGAAGTTCATCCTCGACGGTTATTTCGGCATGCTCAAGATGATCGAGGA TTCCCTCGTCGCTCCCCCTACCGAGTATGCTTAAAAATTGTCATAACCCAAAATAATATC CACCCATCCCCGTATTGCTGCTTCCTGATAATTAAATAATGTGACCCCCGCCAAATCCAA TCTTTTGTGGTGTTTGATTTTGTGAGAGTGATTTGTGTTTGAGGTTATGTAAGAAATAAA TCATAATTGTGATCGTGTTCTATATGTGTGCAAATGAACATGTTTGCTGCTGGGAGATCC CTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_15270#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 298
fasta sequence
                              [ATGCTCCAGTTCATCGCCGCCTCCCTCGTCGCTCCCCCTTCCGAGTATGTTTAAAAATTGTCATAAACCAAAATAATATACATCCATCTCCGTATTGCTGCTTCCTGATAATTAAATAATGTGAGCCTC-GACAAATCCAATCTTTTGTGGTGTTTGATTTTGTGAGAGTGATTTGTGTTTGAGGTTATGTCTTAAAGGGATCATAATTTTCATCGTGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CB000183             [ATGCTCCAGTTCATCGCCGCCTCCCTCGTCGCTCCCCCTTCCGAGTATGTTTAAAAATTGTCATAAACCAAAATAATATACATCCATCTCCGTATTGCTGCTTCCTGATAATTAAATAATGTGAGCCTC GACAAATCCAATCTTTTGTGGTGTTTGATTTTGTGAGAGTGATTTGTGTTTGAGGTTATGTCTTAAAGGGATCATAATTTTCA                                                                                      ]
[+] EMBL AU183963             [                                                               TAAACCAAAATAATATACATCCATCTCCGTATTGCTGCTTCCTGATAATTAAATAATGTGAGCCACAGACAAATCCAATCTTTTGTGGTGTTTGATTTTGTGAGAGTGATTTGTGTTTGAGGTTATGTAAGAAATAAATCATAATTGTGATCGTGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_15270#2 ATGCTCCAGTTCATCGCCGCCTCCCTCGTCGCTCCCCCTTCCGAGTATGTTTAAAAATTG TCATAAACCAAAATAATATACATCCATCTCCGTATTGCTGCTTCCTGATAATTAAATAAT GTGAGCCTCGACAAATCCAATCTTTTGTGGTGTTTGATTTTGTGAGAGTGATTTGTGTTT GAGGTTATGTCTTAAAGGGATCATAATTTTCATCGTGTTCAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15270#0      GAGTAGAAAACAAAGCATTCAAGCAACTAGGTATCTAGCTAAGCAGTGGTGTGATCAGTA 60
consensus_15270#1      ------------------------------------------------------------
consensus_15270#2      ------------------------------------------------------------
                                                                                   

consensus_15270#0      GGAAGTTGCAGGTGGGGGATATATCACCAATGGCTCCGGTCAGCATCTCCGACGAGCGCG 120
consensus_15270#1      ------------------------------------------------------------
consensus_15270#2      ------------------------------------------------------------
                                                                                   

consensus_15270#0      CCGTCTCGGTGTCGGCGGAGCGGGTGTGGAAGGTCTTCTCCGACGCGCCCGCCATGCCCA 180
consensus_15270#1      ------------------------------------------------------------
consensus_15270#2      ------------------------------------------------------------
                                                                                   

consensus_15270#0      AGGTTTGTGCCGGCTTCATCGACGCCATTGAGGTCGAGGGGGATGGCGGGGCGGGCACTG 240
consensus_15270#1      ------------------------------------------------------------
consensus_15270#2      ------------------------------------------------------------
                                                                                   

consensus_15270#0      TCACCACCATGAAGCTCAACCCTGCTGTGGATGATGGGGGGTCATTCAAAACACGTGTGG 300
consensus_15270#1      ------------------------------------------------------------
consensus_15270#2      ------------------------------------------------------------
                                                                                   

consensus_15270#0      TGGCACGTGACAACGCAGCTCACATTATCAAGTCAGAGGTTCTGGATGTGCCGGCCGGAA 360
consensus_15270#1      ------------------------------------------------------------
consensus_15270#2      ------------------------------------------------------------
                                                                                   

consensus_15270#0      GTAAGGTGGGCAAGCTCAAGTCGCACGTGACAGAGACGAAGATCGAGGCCGCCGGTGCCG 420
consensus_15270#1      ----------------------------------------------------------CG 2
consensus_15270#2      ------------------------------------------------------------
                                                                                   

consensus_15270#0      GCTCTTGCTTGGCCAAGATAAACGTGGAGTATGAGCTCGAGGACGGCGGCTCACTGTCGC 480
consensus_15270#1      GTTCTTGCTTGGCCAAGATAAACGTGGAGTATGAGCTCGAGGACGGCGGCTCACTGTCCC 62
consensus_15270#2      ------------------------------------------------------------
                                                                                   

consensus_15270#0      CGGAGAAGGAGAAGCTCATCCTCGACGGCTACTTCGGCATGCTCAAGATGATCGAGGACT 540
consensus_15270#1      CGGAAAAGGAGAAGTTCATCCTCGACGGTTATTTCGGCATGCTCAAGATGATCGAGGATT 122
consensus_15270#2      --------------------------------------ATGCTCCAGTTCATCGCCGCCT 22
                                                             ****** ** * ****  *  *

consensus_15270#0      ACCTCGTCGCTCACCCTACCGAGTATGCTTAAAAATTGTCATAAACCAAAATAATATACA 600
consensus_15270#1      CCCTCGTCGCTCCCCCTACCGAGTATGCTTAAAAATTGTCATAACCCAAAATAATATCCA 182
consensus_15270#2      CCCTCGTCGCTCCCCCTTCCGAGTATGTTTAAAAATTGTCATAAACCAAAATAATATACA 82
                        *********** **** ********* **************** ************ **

consensus_15270#0      TCCATCTCCGTATTGCTGCTTCCTGATAATTAAATAATGTGAGCCACGACAAATCCAATC 660
consensus_15270#1      CCCATCCCCGTATTGCTGCTTCCTGATAATTAAATAATGTGACCCCCGCCAAATCCAATC 242
consensus_15270#2      TCCATCTCCGTATTGCTGCTTCCTGATAATTAAATAATGTGAGCCTCGACAAATCCAATC 142
                        ***** *********************************** ** ** ***********

consensus_15270#0      TTTTGTGGTGTTTGATTTTGTGAGAGTGATTTGTGTTTGAGGTTATGTAAGAAATAAATC 720
consensus_15270#1      TTTTGTGGTGTTTGATTTTGTGAGAGTGATTTGTGTTTGAGGTTATGTAAGAAATAAATC 302
consensus_15270#2      TTTTGTGGTGTTTGATTTTGTGAGAGTGATTTGTGTTTGAGGTTATGTCTTAAAGGGATC 202
                       ************************************************   ***   ***

consensus_15270#0      ATAATTGTGATCGTGTTCTAAAAAAAAAAAAATGAACATGTTTGCTGCTGGGAAA----- 775
consensus_15270#1      ATAATTGTGATCGTGTTCTATATGTGTGCAAATGAACATGTTTGCTGCTGGGAGATCCCT 362
consensus_15270#2      ATAATTTTCATCGTGTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 262
                       ****** * ********* * *       ***  ** *              * *     

consensus_15270#0      --AAAAAAA---------------------------- 782
consensus_15270#1      CCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 399
consensus_15270#2      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA- 298
                         *******                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)