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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15284#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1099 fasta sequence
[ATTGCAAGCCTTACACGTGACCCTGCGCATGCTGCGTGTCCCCGAGCAGCTGTCGCACAGAAGCAGTTGCAACCTGCGAGCGGAAACCCACCTCCACCCCGTCGCCGGCCTGCCGCCGCCGCCGCCGCCGCTTGCCCTCCTCCGCCTTACTCGGCCTCCGGCGCCTCCTGACCCCCCGGCCATGGGTTGCTCTTCGTCTCTGCCAGCTAATAATGCTGGAGGGGTAGGTACTATCAGCAACGAGAATTCTGGTACTGATCTGAAGAACTTGCGAGTGAAGTTGGTATTGCTTGGAGATTCAGGTGTTGGGAAAAGTTGCATTGTTCTTCGCTTTGTCCGTGGTCAGTTTGACCCCACTTCAAAGGTGACTGTTGGTGCATCATTTTTGTCACAAACATTGGCGTTGGAGGATTCCACA-ACAGTAAAGTTTGAAATATGGGATACTGCTGGTCAGGAGAGGTATGCTGCATTGGCACCTCTTTACTACCGGGGAGCTGGTGCCGCAATTGTTGTGTATGACATAACAAGTTCAGAATCATTTAACAAGGCACAATACT-GGGTGAAGGAACTTCAGAAACACGGTAGTCCAGATATGATCATGGCTTTGGTTGGAAATAAGGCTGATCTACATGACAATCGTAGTGTATCCTCTCAGGATGCACAAGAGTATGCAGAGAGGAACACTATGTTTTTCATCGAGACATCAGCGAAAACGGCTGATAACATAAACCAACTATTCGAGGAAATTGCGAAGAGGTTGCCCAGGCCAACACCATCCTGAATTCCTGATTGGTAACTGACCCAGGAAACAGGCTGGCAACTGTGTATTGTACAACAGCAGTAAAAGCTCTGTATGCACATTGTTTGGAAATGCAACAACTGTCATGTAAAGCAACTACTTTGCTCCTTGCTGCTTCTGTTTCCAGCTTGGTCAAGTGAGCTCAGTGTTTTGCTCAGCACAAGCTGATAGGCTATACGCATGGCCACATGGTCATTAGCAGTTGCATTATGCTGCAGGAATTTAACCGTTTCCTGTGAAAATCTTGTGAAATTCCTGCGTTCAAAACAGAGCCTTTATTTCCAGTGCCAAATAGGTTCT]
[+] EMBL AK060324 [ATTGCAAGCCTTACACGTGACCCTGCGCATGCTGCGTGTCCCCGAGCAGCTGTCGCACAGAAGCAGTTGCAACCTGCGAGCGGAAACCCACCTCCACCCCGTCGCCGGCCTGCCGCCGCCGCCGCCGCCGCTTGCCCTCCTCCGCCTTACTCGGCCTCCGGCGCCTCCTGACCCCCCGGCCATGGGTTGCTCTTCGTCTCTGCCAGCTAATAATGCTGGAGGGGTAGGTACTATCAGCAACGAGAATTCTGGTACTGATCTGAAGAACTTGCGAGTGAAGTTGGTATTGCTTGGAGATTCAGGTGTTGGGAAAAGTTGCATTGTTCTTCGCTTTGTCCGTGGTCAGTTTGACCCCACTTCAAAGGTGACTGTTGGTGCATCATTTTTGTCACAAACATTGGCGTTGGAGGATTCCACA ACAGTAAAGTTTGAAATATGGGATACTGCTGGTCAGGAGAGGTATGCTGCATTGGCACCTCTTTACTACCGGGGAGCTGGTGCCGCAATTGTTGTGTATGACATAACAAGTTCAGAATCATTTAACAAGGCACAATACT GGGTGAAGGAACTTCAGAAACACGGTAGTCCAGATATGATCATGGCTTTGGTTGGAAATAAGGCTGATCTACATGACAATCGTAGTGTATCCTCTCAGGATGCACAAGAGTATGCAGAGAGGAACACTATGTTTTTCATCGAGACATCAGCGAAAACGGCTGATAACATAAACCAACTATTCGAGGAAATTGCGAAGAGGTTGCCCAGGCCAACACCATCCTGAATTCCTGATTGGTAACTGACCCAGGAAACAGGCTGGCAACTGTGTATTGTACAACAGCAGTAAAAGCTCTGTATGCACATTGTTTGGAAATGCAACAACTGTCATGTAAAGCAACTACTTTGCTCCTTGCTGCTTCTGTTTCCAGCTTGGTCAAGTGAGCTCAGTGTTTTGCTCAGCACAAGCTGATAGGCTATACGCATGGCCACATGGTCATTAGCAGTTGCATTATGCTGCAGGAATTTAACCGTTTCCTGTGAAAATCTTGTGAAATTCCTGCGTTCAAAACAGAGCCTTTAT ]
[+] EMBL AK070200 [ CCTTACACGTGACCCTGCGCATGCTGCGTGTCCCCGAGCAGCTGTCGCACAGAAGCAGTTGCAACCTGCGAGCGGAAACCCACCTCCATCCCGTCGCCGGCCTGCCGCCGCCGCCGCCGCCGCTTGCCCTCCTCCGCCTTACTCGGCCTCCGGCGCCTCCTGACCCCCCGGCCATGGGTTGCTCTTCGTCTCTGCCAGCTAATAATGCTGGAGGGGTAGGTACTATCAGCAACGAGAATTCTGGTACTGATCTGAAGAACTTGCGAGTGAAGTTGGTATTGCTTGGAGATTCAGGTGTTGGGAAAAGTTGCATTGTTCTTCGCTTTGTCCGTGGTCAGTTTGACCCCACTTCAAAGGTGACTGTTGGTGCATCATTTTTGTCACAAACATTGGCGTTGGAGGATTCCACA ACAGTAAAGTTTGAAATATGGGATACTGCTGGTCAGGAGAGGTATGCTGCATTGGCACCTCTTTACTACCGGGGAGCTGGTGCCGCAATTGTTGTGTATGACATAACAAGTTCAGAATCATTTAACAAGGCACAATACT GGGTGAAGGAACTTCAGAAACACGGTAGTCCAGATATGATCATGGCTTTGGTTGGAAATAAGGCTGATCTACATGACAATCGTAGTGTATCCTCTCAGGATGCACAAGAGTATGCAGAGAGGAACACTATGTTTTTCATCGAGACATCAGCGAAAACGGCTGATAACATAAACCAACTATTCGAGGAAATTGCGAAGAGGTTGCCCAGGCCAACACCATCCTGAATTCCTGATTGGTAACTGACCCAGGAAACAGGCTGGCAACTGTGTATTGTACAACAGCAGTAAAAGCTCTGTATGCACATTGTTTGGAAATGCAACAACTGTCATGTAAAGCAACTACTTTGCTCCTTGCTGCTTCTGTTTCCAGCTTGGTCAAGTGAGCTCAGTGTTTTGCTCAGCACAAGCTGATAGGCTATACGCATGGCCACATGGTCATTAGCAGTTGCATTATGCTGCAGGAATTTAACCGTTTCCTGTGAAAATCTTGTGAAATTCCTGCGTTCAAAACAGAGCCTTTATTTCCAGTGCCAAATTGGTTCT]
[+] EMBL CF290827 [ TGTCCCCGAGCAGCTGTCGCACAGAAGCAGTTGCAACCTGCGAGCGGAAACCCACCTCCACCCCGTCGCCGGCCTGCCGCCGCCGCCGCCGCCGCTTGCCCTCCTCCGCCTTACTCGGCCTCCGGCGCCTCCTGACCCCCCGGCCATGGGTTGCTCTTCGTCTCTGCCAGCTAATTATGCTGGAGGGGTAGGTACTATCAGCAACGAGAATTCTGGTACTGATCTGAAGAACTTGCGAGTGAAGTTGGTATTGCTTGGAGATTCAGGTGTTGGGAAAAGTTGCATTGTTCTTCGCTTTGTCCGTGGTCAGTTTGACCCCACTTCAAAGGTGACTGTTGGTGCATCATTTTTGTCACAAACATTGGCGTTGGAGGATTCCACA ACAGTAAAGTTTGAAATATGGGATACTGCTGGTCAGGAGAGGTATGCTGCATTGGCACCTCTTTACTACCGGGGAGCTGGTGCCGCAATTGTTGTGTATGACATAACAAGTTCAGAATCATTTAACAAGGCACAATACTGGGGTGAAGGAACTTCAGAAACACGGTAGTCCA ]
[+] EMBL OSAA31895 [ ACCCCACTTCAAAGGTGACTGTTGGTGCATCATTTTTGTCACAAACATTGGCGTTGGAGGATTCCACACACAGTAAAGTTTGAAATATGGGATACTGCTGGTCAGGAGAGGTATGCTGCATTGGCACCTCTTTACTACCGGGGAGCTGGTGCCGCAATTGTTGTGTATGACATAACAAGTTCAGAATCATTTAACAAGGCACAATACT GGGTGAAGGAACTTCAGAAACACGGTAGTCCAGATATGATCATGGCTTTGGTTGGAAATAAGGCTGATCTACATGACAATCGTAGTGTATCCTCTCAGGATGCACAAGAGTATGCAGAGAGGAACACTATGTTTTTC ]
[-] EMBL CF290828 [ CGTAGTGTATCCTCTCAGGATGCACAAGAGTATGCAGAGAGGAACACTATGTTTTTCATCGAGACATCAGCGAAAACGGCTGATAACATAAACCAACTATTCGAGGAAATTGCGAAGAGGTTGCCCAGGCCAACACCATCCTGAATTCCTGATTGGTAACTGACCCAGGAAACAGGCTGGCAACTGTGTATTGTACAACAGCAGTAAAAGCTCTGTATGCACATTGTTTGGAAATGCAACAACTGTCATGTAAAGCAACTACTTTGCTCCTTGCTGCTTCTGTTTCCAGCTTGGTCAAGTGAGCTCAGTGTTTTGCTCAGCACAAGCTGATAGGCTATACGCATGGCCACATGGTCATTAGCAGTTGCATTATGCTGCAGGAATTTAACCGTTTCCTGTGAAAATCTTGTGAAATTCCTGCGTTCAAAACAGAGCCTTTATTTCCAGTGCCAAAaaaaaaaa]
[+] EMBL CA763807 [ ACAGCAGTAAAAGCTCTGTATGCACATTGTTTGGAAATGCAACAACTGTCATGTAAAGCAACTACTTTGCTCCTTGCTGCTTCTGTTTCCAGCTTGGTCAAGTGAGCTCAGTGTTTTGCTCAGCACAAGCTGATAGGCTATACGCATGGCCACATGGTCATTAGCAGTTGCATTATGCTGCAGGAATTTAACCGTTTCCTGCGAAAATCTTGTGAAATTCCTGCGTTCAAAACAGAGCCTTTATTT ]
[-] EMBL OSAA31896 [ CTTCTGTTTCCAGCTTGGTCAAGTGAGCTCAGTGTTTTGCTCAGCACAAGCTGATAGGCTATACGCATGGCCACATGGTCATTAGCAGTTGCATTATGCTGCAGGAATTTAACCGTTTCCTGCGAAAATNTTGTGAAATTCCTGCGTTCAAAACAGAGCCTTTATTTCCAGTGCCAAATgtg ]
consensusID : consensus_15284#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1080 fasta sequence
[GGATCAACAGACTCGAGTAGGG--GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGCGACGCGGCAATCGATCTGCCCGCCTCACCTCCGGCCACCGACCACCGCCGCCTCCGCGTCCCTCTGCCTCACCTCGACGCCGGCTAGCATCGCCGGCGATGGGTTGCTCCTCCTCCGTGCCAGCTCGAAGCACTGGAGGGTTGAACAATATTAGCAACGATAACTCCGCTAC-TGATTCAAAGGACTTGCGTGCTAAGTTGGTATTGCTTGGTGACTCTGGTGTAGGGAAAAGTTGCATTGTTCTTCGCTTTGTTCGTGGTCAGTTTGATCCCACTTCCAAGGTAACT-GTCGGTGCATCATTTTTATCACAAACATT-GGCTTTGGAGGACTCAACAATAGT-GAAATTTGAAATATGGGATACCGCTGGACAAGAGAGGTATGCTGCCTTGGCACCTCTTTACTACAGAGGAGCTGCTGCTGCAGTTG-TTGTCTACGACATAACTAGT-CCAGAATCATTTAGCAAAGCACAATACTGGGTGAAGGAACTTC-AAAAACATGGTAGTCCTGATATTAT-CATGGTTTTGGTTGGTAATAAAGCTGATCTACATGAAAATCGACATGTATCTTCT-CAGGAAGCACAAGAGTATGCAGAGAAGAATAATATGGTTTTCATCGAGACAT-CAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAGGAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCGGTGTTTGTTGAAGTGGAACACATACAAGCTGGTAATGTGCATGTAACATGTCTGT-CAGGGCAAAAACTGCTGTATGGTCGATTGTTTGGAAAACAAAGGATACTGTACAGTTTATCCCATTGTGTTCAATCGTATCGTATTGTATATGTTA--ATAGTGCCGTCGTGTAACATCTTAGTTTACTAAAACAATCTAATATCGGTACTAAAAAAAGTTGCTTAGTTGCTGTGCCTGTGTAAAAACACCACACCAAAGTTTCATCTAAACAAGTACTCCGTGTACAATTGCAAAAAAAAAAAA]
[+] EMBL AK121527 [GGATCAACAGACTCGAGTAGGG GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGCGACGCGGCAATCGATCTGCCCGCCTCACCTCCGGCCACCGACCACCGCCGCCTCCGCGTCCCTCTGCCTCACCTCGACGCCGGCTAGCATCGCCGGCGATGGGTTGCTCCTCCTCCGTGCCAGCTCGAAGCACTGGAGGGTTGAACAATATTAGCAACGATAACTCCGCTAC TGATTCAAAGGACTTGCGTGCTAAGTTGGTATTGCTTGGTGACTCTGGTGTAGGGAAAAGTTGCATTGTTCTTCGCTTTGTTCGTGGTCAGTTTGATCCCACTTCCAAGGTAACT GTCGGTGCATCATTTTTATCACAAACATT GGCTTTGGAGGACTCAACAATAGT GAAATTTGAAATATGGGATACCGCTGGACAAGAGAGGTATGCTGCCTTGGCACCTCTTTACTACAGAGGAGCTGCTGCTGCAGTTG TTGTCTACGACATAACTAGT CCAGAATCATTTAGCAAAGCACAATACTGGGTGAAGGAACTTC AAAAACATGGTAGTCCTGATATTAT CATGGTTTTGGTTGGTAATAAAGCTGATCTACATGAAAATCGACATGTATCTTCT CAGGAAGCACAAGAGTATGCAGAGAAGAATAATATGGTTTTCATCGAGACAT CAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAGGAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCGGTGTTTGTTGAAGTGGAACACATACAAGCTGGTAATGTGCATGTAACATGTCTGT CAGGGCAAAAACTGCTGTATGGTCGATTGTTTGGAAAACAAAGGATACTGTACAGTTTATCCCATTGTGTTCAATCGTATCGTATTGTATATGTTA ATAGTGCCGTCGTGTAACATCTTAGTTTACTAAAACAATCTAATATCGGTACTAAAA ]
[+] EMBL C73501 [ GATCAACAGACTCGAGTAGGG GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGCGACGCGGCAATCGATCTGCCCGCCTCACCTCCGGCCACCGACCACCGCCGCCTCCGCGTCCCTCTGCCTCACCTCGACGCCGGCTAGCATCGCCGGCGATGGGTTGCTCCTCCTCCGTGCCAGCTCGAAGCACTGGAGGGTTGAACAATATTAGCAACGATAACTCCGCTACTTGATTCAAAGGACTTGCGTGCTAAGTTGGTATTGCTTGGTGACTCTGGTGTAGGGAAAAGTTGCATTGTTCTTCGCTTTGTTCGTGGTCAGTTTGATCCCACTTNCAAGGTAACT GTCGGTGCATCATTNTTATCACAAACATTGGGCTTTGGAGGGCTCAACAATAGTGGAAATTTG ]
[+] EMBL CF297755 [ ACAGACTCGAGTAGGG GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGCGACGCGGCAATCGATCTGCCCGCCTCACCTCCGGCCACCGACCACCGCCGCCTCCGCGTCCCTCTGCCTCACCTCGACGCCGGCTAGCATCGCCGGCGATGGGTTGCTCCTCCTCCGTGCCAGCTCGAAGCACTGGAGGGTTGAACAATATTAGCAACGATAACTCCGCTAC TGATTCAAAGGACTTGCGTGCTAAGTTGGTATTGCTTGGTGACTCTGGTGTAGGGAAAAGTTGCATTGTTCTTCGCTTTGTTCGTGGTCAGTTTGATCCCACTTCCAAGGTAACT GTCGGTGCATCATTTTTATCACAAACATT GGCTTTGGAGGACTCAACAATAGT GAAATTTGAAATATGG ]
[+] EMBL CF281881 [ CGAGTAGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGCGACGCGGCAATCGATCTGCCCGCCTCACCTCCGGCCACCGACCACCGCCGCCTCCGCGTCCCTCTGCCTCACCTCGACGCCGGCTAGCATCGCCGGCGATGGGTTGCTCCTCCTCCGTGCCAGCTCGAAGCACTGGAGGGTTGAACAATATTAGCAACGATAACTCCGCTAC TGATTCAAAGGACTTGCGTGCTAAGTTGGTATTGCTTGGTGACTCTGGTGTAGGGAAAAGTTGCATTGTTCTTCGCTTTGTTCGTGGTCAGTTTGATCCCACTTCCAAGGTAACTGGTCGGTGCATCATTTTTATCACAAACATT GGCTTTGGAGGACTCAACAATAGT GAAATTTGAAATATGGGATACCGCTGGACAAGAGAGGTATGCTGCCTTGGCACCTCTTTACTACAGAGGAG ]
[+] EMBL AK105389 [ GAGTAGGG GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGGCGACGCGGCAATCGATCTGCCCGCCTCACCTCCGGCCACCGACCACCGCCGCCTCCGCGTCCCTCTGCCTCACCTCGACGCCGGCTAGCATCGCCGGCGATGGGTTGCTCCTCCTCCGTGCCAGCTCGAAGCACTGGAGGGTTGAACAATATTAGCAACGATAACTCCGCTAC TGATTCAAAGGACTTGCGTGCTAAGTTGGTATTGCTTGGTGACTCTGGTGTAGGGAAAAGTTGCATTGTTCTTCGCTTTGTTCGTGGTCAGTTTGATCCCACTTCCAAGGTAACT GTCGGTGCATCATTTTTATCACAAACATT GGCTTTGGAGGACTCAACAATAGT GAAATTTGAAATATGGGATACCGCTGGACAAGAGAGGTATGCTGCCTTGGCACCTCTTTACTACAGAGGAGCTGCTGCTGCAGTTG TTGTCTACGACATAACTAGT CCAGAATCATTTAGCAAAGCACAATACTGGGTGAAGGAACTTC AAAAACATGGTAGTCCTGATATTAT CATGGTTTTGGTTGGTAATAAAGCTGATCTACATGAAAATCGACATGTATCTTCT CAGGAAGCACAAGAGTATGCAGAGAAGAATAATATGGTTTTCATCGAGACAT CAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAGGAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCGGTGTTTGTTGAAGTGGAACACATACAAGCTGGTAATGTGCATGTAACATGTCTGT CAGGGCAAAAACTGCTGTATGGTCGATTGTTTGGAAAACAAAGGATACTGTACAGTTTATCCCATTGTGTTCAATCGTATCGTATTGTATATGTTA ATAGTGCCGTCGTGTAACATCTTAGTTTACTAAAACAATCTAATATCGGTACTAAAAAAAGTTGCTTAGTTGCT ]
[+] EMBL C97344 [ AAGGCGACGCGGCAATCGATCTGCCCGCCTCACCTCCGGCCACCGACCACCGCCGCCTCCGCGTCCCTCTGCCTCACCTCGACGCCGGCTAGCATCGCCGGCGATGGGTTGCTCCTCCTCCGTGCCAGCTCGAAGCACTGGAGGGTTGAACAATATTAGCAACGATAACTCCGCTAC TGATTCAAAGGACTTGCGTGCTAAGTTGGTATTGCTTGGTGACTCTGGTGTAGGGAAAAGTTGCATTGTTCTTCGCTTTGTTCGTGGTCAGTTTGATCCCACTTCCAAGGTAACT GTCGGTGCATCATTTTTATCACAAACATT GGCTTTGGAGGACTCAACAATAGT GAAATTTGAAATATGGGATACCGCTGGACAAGAGAGGTATGCTGCCTTGGCACCTCTTTACTACAGAGGAGCTGCTGCTGCAGTTG TTGTCTACGACATAACTAGT CCAGAATCATTTAGCAAAGCACAATACTGGGTGAAGGAACTTC AAAAACATGGTANTCCTGATATT ]
[+] EMBL AB032761 [ AAGGCGACGCGGCAATCGATCTGCCCGCCTCACCTCCGGCCACCGACCACCGCCGCCTCCGCGTCCCTCTGCCTCACCTCGACGCCGGCTAGCATCGCCGGCGATGGGTTGCTCCTCCTCCGTGCCAGCTCGAAGCACTGGAGGGTTGAACAATATTAGCAACGATAACTCCGCTAC TGATTCAAAGGACTTGCGTGCTAAGTTGGTATTGCTTGGTGACTCTGGTGTAGGGAAAAGTTGCATTGTTCTTCGCTTTGTTCGTGGTCAGTTTGATCCCACTTCCAAGGTAACT GTCGGTGCATCATTTTTATCACAAACATT GGCTTTGGAGGACTCAACAATAGT GAAATTTGAAATATGGGATACCGCTGGACAAGAGAGGTATGCTGCCTTGGCACCTCTTTACTACAGAGGAGCTGCTGCTGCAGTTG TTGTCTACGACATAACTAGT CCAGAATCATTTAGCAAAGCACAATACTGGGTGAAGGAACTTC AAAAACATGGTAGTCCTGATATTAT CATGGTTTTGGTTGGTAATAAAGCTGATCTACATAAAAATCGACATGTATCTTCT CAGGAAGCACAAGAGTATGCAGAGAAGAATAATATGGTTTTCATCGAGACAT CAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAGGAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCGGTGTTTGTTGAAGTGGAACACATACAAGCTGGTAATGTGCATGTAACATGTCTGT CAGGGCAAAAACTGCTGTATGGTCGATTGTTTGGAAAACAAAGGATACTGTACAGTTTATCCCATTGTGTTCAATCGTATCGTATTGTATATGTTA ATAGTGCCGTCGTGTAACATCTTAGTTTACTAAAACAATCTAATATCGGTACTAAAAAAAGTTGCTTAGTTGCTGTGCCTGTGTAAAAA ]
[+] EMBL C99985 [ TGATTCAAAGGACTTGCGTGCTAAGTTGGTATTGCTTGGTGACTCTGGTGTAGGGAAAAGTTGCATTGTTCTTCGCTTTGTTCGTGGTCAGTTTGATCCCACTTCCAAGGTAACT GTCGGTGCATCATTTTTATCACAAACATT GGCTTTGGAGGACTCAACAATAGT GAAATTTGAAATATGGGATACCGCTGGACAAGAGAGGTATGCTGCCTTGGCACCTCTTTACTACAGAGGAGCTGCTGCTGCAGTTG TTGTCTACGACATAACTAGT CCAGAATCATTTAGCAAAGCACAATACTGGGTGAAGGAACTTC AAAAACATGGTAGTCCTGATATTAT CATGGTTTTGGTTGGTAATAAAGCTGATCTACATGAAAATCGACATGTATCTTCT CAGGAAGCACAAGAGTATGCAGAGAAGAATAATATGGTTTTCATCGAGACAT CAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAGGAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCGGTGTTTGTTGAAGTGGAACACATACAAGCTGGTAATGTGCATGTAACATGTCTGT CAGGGCAAAAACTGCTGTATGGTCGATTGTTTGGAAAACAAAGGATACTGTACAGTTTATCCCATTGTGTTCAATCGTATCGTATTGTATATGTTAATATAGTGCCGTCGTGTAACATCTTAGTTTACTAAAACAATCTAATATCGGTACTAAAAAAAGTT ]
[+] EMBL AU165731 [ GCATTGTTCTTCGCTTTGTTCGTGGTCAGTTTGATCCCACTTCCAAGGTAACT G CGGTGCATCATTTTTATCACAAACATT GGCTTTGGAGGACTCACCAATAGT GAAATTTGAAATATGGGATACCGCTGGACAAGAGAGGTATGCTGCCTTGGCACCTCTTTACTACAGAGGAGCTGCTGCTGCAGTTG TTGTCTACGACATAACTAGT CCAGAATCATTTAGCAAAGCACAATACTGGGTGAAGGAACTTC AAAAACATGGTAGTCCTGATATTAT CATGGTTTTGGTTGGTAATAAAGCTGATCTACATGAAAATCGACATGTATCTTCT CAGGAAGCACAAGAGTATGCAGAGAAGAATAATATGGTTTTCATCGAGACAT CAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAGGAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCGGTGTTTGTTGAAGTGGAACACATACAAGCTGGTAATGTGCATGTAACATGTCTGT CAGGGCAAAAACTGCTGTATGGTCGATTGTTTGGAAAACAAAGGATACTGTACAGTTTATCCCATTGTGTTCAATCGTATCGTATTGTATATGTTA ATAGTGCCGTCGTGTAACATCTTAGTTTACTAAAACAATCTAATATCGGTACTAAAAAAAaaaa ]
[-] EMBL CA759389 [ ACTCACCAATAGT GAAATTTGAAATATGGGATACCGCTGGACAAGAGAGGTATGCTGCCTTGGCACCTCTTTACTACAGAGGAGCTGCTGCTGCAGTTG TTGTCTACGACATAACTAGT CCAGAATCATTTAGCAAAGCACAATACTGGGTGAAGGAACTTC AAAAACATGGTAGTCCTGATATTAT CATGGTTTTGGTTGGTAATAAAGCTGATCTACATGAAAATCGACATGTATCTTCT CAGGAAGCACAAGAGTATGCAGAGAAGAATAATATGGTTTTCATCGAGACAT CAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAGGAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGNTTCGGTGTTTGTTGAAGTGGAACACATACAAGCTGGTAATGTGCATGTAACATGTCTGT CAGGGCAAAAACTGCTGTATGGTCGATTGTTTGGAAAACAAAGGATACTGTACAGTTTATCCCATTGTGTTCAATCGTATCGTATTGTATATGTTA ATAGTGCCGTCGTGTAACATCTTAGTTTACTAAAACAATCTAATATCGGTACTAAAAAAAGTTGCTTAGTTGCTGTGCCTGTGTACACCCACCACACCAAAGTTTCATCTAAACAAGTACTCCGTGTACAATTGCAAAAAAAAAAAA]
[+] EMBL C97345 [ CTCTTTACTACAGAGGAGCTGCTGCTGCAGTTGTTTGTCTACGACATAACTAGTCCCAGATCCATTTAGCNAAGCACAATACTGGGTGAAGGAACTTC AAAAACATGGTAGTCCTGATATTATCCATGGTTTTGGTTGGTNATAAAGCTGATCTACATAAAAATCGACATGTATCTTCTCCAGGAAGCACAAGAGTATGCAGAGAAGAATAATATGGTTTTCATCGAGACATCCAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAGGAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCGGTGTTTGTTGAAGTGGAACACATACAAGCTGGTAATGTGCATGTAACATGTCTGTACAGGGCAAAAACTGCTGTATGGTCGATTGTTTGGAAAACAAAGGATACTGTACAGTTTATCCCATTGTGTTCAATCGTATCGTATTGTATATGTTA ATAGTGCCGTCGTGTAACATCTTAGTTTACTAAAACAATCTAATATCGGTACTAAAAAAAGTTGCTTAGTTGCTGTGCCTGTGTAAAAA ]
[-] EMBL CF297756 [ TTTAGCAAAGCACAATACTGGGTGAAGGAACTTCAAAAAACATGGTAGTCCTGATATTAT CATGGTTTTGGTTGGTAATANAGCTGATCTACATGAAAATCGACATGTATCTTCT CAGGAAGCACAAGAGTATGCAGAGAAGAATAATATGGTTTTCATCGAGACAT CAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAGGAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCGGTGTTTGTTGAAGTGGAACACATACAAGCTGGTAATGTGCATGTAACATGTCTGT CAGGGCAAAAACTGCTGTATGGTCGATTGTTTGGAAAACAAAGGATACTGTACAGTTTATCCCATTGTGTTCAATCGTATCGTATTGTATATGTTA ATAGTGCCGTCGTGTAACATCTTAGTTTACTAAAACAATCTAATATCGGTACTAAAA ]
consensusID : consensus_15284#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 359 fasta sequence
[AAAACATGGTAGTCCTGATATTATCATGGTTTTGGTTGGTAATAAAGCTGATCTACATGAAAATCGACATGTATCTTCTCAGGAAGCACAAGAGTATGCAGAGAAGAATAATATGGTTTTCATCGAGACATCAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAGGAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCGGTGTTTGTTGAAGTGGAACACATACAAGCTGGTAATGTGCATGTAACATGTCTGTCAGGGCAAAAACTGCTGTATGGTCGATTGTTTGGAAAACAAAGGATACTGTCCAGTTTAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CF281882 [AAAACATGGTAGTCCTGATATTATCATGGTTTTGGTTGGTAATAAAGCTGATCTACATGAAAATCGACATGTATCTTCTCAGGAAGCACAAGAGTATGCAGAGAAGAATAATATGGTTTTCATCGAGACATCAGCAAAGACAGCTGATAATATAAACCAAGTATTTGAGGAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGATAATTAGCTTCGGTGTTTGTTGAAGTGGAACACATACAAGCTGGTAATGTGCATGTAACATGTCTGTCAGGGCAAAAACTGCTGTATGGTCGATTGTTTGGAAAACAAAGGATACTGTCCAGTTTAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_15284#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 319 fasta sequence
[AATNGAGGGAAATNCGAAAAGGGTGCCCCAGGCCCACCCCCATCCTTGAATCCTGAATGGGTACTTANCCAGGAAACAGGCTGGCCAACTGTGNTATGGACCACCACCAGGTAAAGCTCTGGAATGCCCATGGTTGGNAAATNCACCAACTGTCATGTAAAGNAACTACTTTGTCCCTTGCTGCTTCTGGTTCCCAGCTTGGGNCAAGTGAGCTCAGTGTTTTTGCTCAGCNCNAGCTGATAGGCTATACGCATGGCCACATGGTCATTAGCAGTTGCANTATGCTGCAGGAANTNACCGTTTCCTGTAAAAAAAAAAA]
[+] EMBL AU166624 [AATNGAGGGAAATNCGAAAAGGGTGCCCCAGGCCCACCCCCATCCTTGAATCCTGAATGGGTACTTANCCAGGAAACAGGCTGGCCAACTGTGNTATGGACCACCACCAGGTAAAGCTCTGGAATGCCCATGGTTGGNAAATNCACCAACTGTCATGTAAAGNAACTACTTTGTCCCTTGCTGCTTCTGGTTCCCAGCTTGGGNCAAGTGAGCTCAGTGTTTTTGCTCAGCNCNAGCTGATAGGCTATACGCATGGCCACATGGTCATTAGCAGTTGCANTATGCTGCAGGAANTNACCGTTTCCTGTAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15284#0 ATTGCAAGCCTTACACGTGACCCTGCGCATGCTGCGTGTCCCCGAGCAGCTGTCGCACAG 60
consensus_15284#3 ------------------------------------------------------------
consensus_15284#1 ------------------------------------------------------------
consensus_15284#2 ------------------------------------------------------------
consensus_15284#0 AAGCAGTTGCAACCTGCGAGCGGAAACCCACCTCCACCCCGTCGCCGGCCTGCCGCCGCC 120
consensus_15284#3 ------------------------------------------------------------
consensus_15284#1 ------------------------------------------------------------
consensus_15284#2 ------------------------------------------------------------
consensus_15284#0 GCCGCCGCCGCTTGCCCTCCTCCGCCTTACTCGGCCTCCGGCGCCTCCTGACCCCCCGGC 180
consensus_15284#3 ------------------------------------------------------------
consensus_15284#1 ------------------------------------------------------------
consensus_15284#2 ------------------------------------------------------------
consensus_15284#0 CATGGGTTGCTCTTCGTCTCTGCCAGCTAATAATGCTGGAGGGGTAGGTACTATCAGCAA 240
consensus_15284#3 ------------------------------------------------------------
consensus_15284#1 ---------GGATCAACAGACTCGAGTAGGGGAGAGAGAGAGAGAGAGAGAGAGAGAGAG 51
consensus_15284#2 ------------------------------------------------------------
consensus_15284#0 CGAGAATTCTGGTACTGATCTGAAGAACTTGCGAGTGAAGTTGGTATTGCTTGGAGATTC 300
consensus_15284#3 ------------------------------------------------------------
consensus_15284#1 AGAGAGAGAGAGAGAGAAGGCGACGCGGCAATCGATCTGCCCGCCTCACCTCCGGCCACC 111
consensus_15284#2 ------------------------------------------------------------
consensus_15284#0 AGGTGTTGGGAAAAGTTGCATTGTTCTTCGCTTTGTCCGTGGTCAGTTTGACCCCACTTC 360
consensus_15284#3 ------------------------------------------------------------
consensus_15284#1 GACCACCGCCGCCTCCGCGTCCCTCTGCCTCACCTCGACGCCGGCTAGCATCGCCGGCGA 171
consensus_15284#2 ------------------------------------------------------------
consensus_15284#0 AAAGGTGACTGTTGGTGCATCATTTTTGTCACAAACATTGGCGTTGGAGGATTCCACAAC 420
consensus_15284#3 ------------------------------------------------------------
consensus_15284#1 TGGGTTGCTCCTCCTCCGTGCCAGCTCGAAGCACTGGAGGGTTGAACAATATTAGCAACG 231
consensus_15284#2 ------------------------------------------------------------
consensus_15284#0 AGTAAAGTTTGAAATATGGGATACTGCTGGTCAGGAGAGGTATGCTGCATTGGCACCTCT 480
consensus_15284#3 ------------------------------------------------------------
consensus_15284#1 ATAACTCCGCTACTGATTCAAAGGACTTGCGTGCTAAGTTGGTATTGCTTGGTGACTCTG 291
consensus_15284#2 ------------------------------------------------------------
consensus_15284#0 TTACTACCGGGGAGCTGGTGCCGCAATTGTTGTGTATGACATAACAAGTTCAGAATCATT 540
consensus_15284#3 ------------------------------------------------------------
consensus_15284#1 GTGTAGGGAAAAGTTGCATTGTTCTTCGCTTTGTTCGTGGTCAGTTTGATCCCACTTCCA 351
consensus_15284#2 ------------------------------------------------------------
consensus_15284#0 TAACAAGGCACAATACTGGGTGAAGGAACTTCAGAAACACGGTAGTCCAGATATGATCAT 600
consensus_15284#3 ------------------------------------------------------------
consensus_15284#1 AGGTAACTGTCGGTGCATCATTTTTATCACAAACATTGGCTTTGGAGGACTCAACAATAG 411
consensus_15284#2 ------------------------------------------------------------
consensus_15284#0 GGCTTTGGTTGGAAATAAGGCTGATCTACATGACAATCGTAGTGTATCCTCTCAGGATGC 660
consensus_15284#3 ------------------------------------------------------------
consensus_15284#1 TGAAATTTGAAATATGGGATACCGCTGGACAAGAGAGGTATGCTGCCTTGGCACCTCTTT 471
consensus_15284#2 ------------------------------------------------------------
consensus_15284#0 ACAAGAGTATGCAGAGAGGAACACTATGTTTTTCATCGAGACATCAGCGAAAACGGCTGA 720
consensus_15284#3 ------------------------------------------------------------
consensus_15284#1 ACTACAGAGGAGCTGCTGCTGCAGTTGTTGTCTACGACATAACTAGTCCAGAATCATTTA 531
consensus_15284#2 ------------------------------------------------------------
consensus_15284#0 TAACATAAACCAACTATTCGAGGAAATTGCGAAGAG--GTTGCCCAGG--CCAACACCAT 776
consensus_15284#3 ---------------AATNGAGGGAAATNCGAAAAG--GGTGCCCCAGGCCCACCCCCAT 43
consensus_15284#1 GCAAAGCACAATACTGGGTGAAGGAACTTCAAAAACATGGTAGTCCTGATATTATCATGG 591
consensus_15284#2 -------------------------------AAAACATGGTAGTCCTGATATTATCATGG 29
** * * * * *
consensus_15284#0 CCTGAATTCCTGA-TTGGTAACTGACCCAGGAAACAGGCTGGC-AACTGTGTATTGTACA 834
consensus_15284#3 CCTTGAATCCTGA-ATGGGTACTTANCCAGGAAACAGGCTGGCCAACTGTGNTATGGACC 102
consensus_15284#1 TTTTGGTTGGTAATAAAGCTGATCTACATGAAAATCGACATGTATCTTCTCAGGAAGCAC 651
consensus_15284#2 TTTTGGTTGGTAATAAAGCTGATCTACATGAAAATCGACATGTATCTTCTCAGGAAGCAC 89
* * * * * * * * *** * * * * *
consensus_15284#0 AC-AGCAGTAAAAGCTC--TGTA-TGCACATTGTTTGGAAATGCAA-----CAACTG-TC 884
consensus_15284#3 ACCACCAGGTAAAGCTC--TGGAATGCCCATGGTTGGNAAATNCAC-----CAACTG-TC 154
consensus_15284#1 AAGAGTATGCAGAGAAGAATAATATGGTTTTCATCGAGACATCAGCAAAGACAGCTGATA 711
consensus_15284#2 AAGAGTATGCAGAGAAGAATAATATGGTTTTCATCGAGACATCAGCAAAGACAGCTGATA 149
* * * * ** * ** * * * ** ** *** *
consensus_15284#0 ATGTAAAGCAACTACTT--------TGCTCCTTGCTGCTTCTG-TTTCCAGC-TTGG-TC 933
consensus_15284#3 ATGTAAAGNAACTACTT--------TGTCCCTTGCTGCTTCTGGTTCCCAGC-TTGGGNC 205
consensus_15284#1 ATATAAACCAAGTATTTGAGGAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGAT 771
consensus_15284#2 ATATAAACCAAGTATTTGAGGAAATTGCGAAGAGGTTGCCCAGGCCAACGGCGTCTTGAT 209
** **** ** ** ** ** * * * * * ** *
consensus_15284#0 AAGTGAGCTCAGTGTTT-------T-GCTCA-GCACAAGCTGATAGGCTATACG---CAT 981
consensus_15284#3 AAGTGAGCTCAGTGTTT-------TTGCTCA-GCNCNAGCTGATAGGCTATACG---CAT 254
consensus_15284#1 AATTAGCTTCGGTGTTTGTTGAAGTGGAACACATACAAGCTGGTAATGTGCATGTAACAT 831
consensus_15284#2 AATTAGCTTCGGTGTTTGTTGAAGTGGAACACATACAAGCTGGTAATGTGCATGTAACAT 269
** * ** ****** * * ** * ***** ** * * * ***
consensus_15284#0 GGCCACATGGTCATTAGCAGTTGCATTAT--GCTGCAGGAATTTAACCGTTTCCTGTGAA 1039
consensus_15284#3 GGCCACATGGTCATTAGCAGTTGCANTAT--GCTGCAGGAANTNA-CCGTTTCCTGTAAA 311
consensus_15284#1 GTCTGTCAGGGCAAAAACTGCTGTATGGTCGATTGTTTGGAAAACAAAGGATACTGTACA 891
consensus_15284#2 GTCTGTCAGGGCAAAAACTGCTGTATGGTCGATTGTTTGGAAAACAAAGGATACTGTCCA 329
* * ** ** * * * ** * * ** * * * * **** *
consensus_15284#0 AATCTTGTGAAATTCCTGCGTTCAAAACAGAGCCTTTATTTCCAGTGCCAAATAGGTTCT 1099
consensus_15284#3 AA----AAAAAA------------------------------------------------ 319
consensus_15284#1 GTTTATCCCATTGTGTTCAATCGTATCGTATTGTATATGTTAATAGTGCCGTCGTGTAAC 951
consensus_15284#2 GTTTAAAAAAAAAAAAAAAAAAAAAAAAAA------------------------------ 359
*
consensus_15284#0 ------------------------------------------------------------
consensus_15284#3 ------------------------------------------------------------
consensus_15284#1 ATCTTAGTTTACTAAAACAATCTAATATCGGTACTAAAAAAAGTTGCTTAGTTGCTGTGC 1011
consensus_15284#2 ------------------------------------------------------------
consensus_15284#0 ------------------------------------------------------------
consensus_15284#3 ------------------------------------------------------------
consensus_15284#1 CTGTGTAAAAACACCACACCAAAGTTTCATCTAAACAAGTACTCCGTGTACAATTGCAAA 1071
consensus_15284#2 ------------------------------------------------------------
consensus_15284#0 ---------
consensus_15284#3 ---------
consensus_15284#1 AAAAAAAAA 1080
consensus_15284#2 ---------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||