These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1529#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1473 fasta sequence [AGCAGCTAAAAGTCAATCCACGCCACCATCGATCTCTCTATCCAATCCAAGCGCGCAAATCAATGGCAGAGCATTTCAGCCACGCCGGCATGTACATCGGCTACACGGCAGACGCCGCCGCGTCCTCCTCCTCCTCCTCCTCGTCTTCGTCGTCTTCCTCCTCGGAGATGCTTCGGTTCGACACGGGCTGGCCCGACGAGACACCTGCGCCATCCTCCGTGGCGGGGAGGAGGAGGAGCGCGGGCGGTGATCATCGTCAAGGTCGGGGACAGACGGAGGCGGCGGCGGCGTTCATCGGGGTGCGGAGGCGGCCGTGGGGCAGGTTCGCGGCGGAGATCCGGGACTCGACGCGGAACGGCGCGCGGGTGTGGATCGGCACGTTCGACAGCGCCGAGGCCGCCGCGATGGCCTACGACCAGGCCGCGCTCTCGGCGCGTGGCGCCGCCGCGGCGCTCAACTTCCCCGTGGAGCGCGTCCGCGAGTCGCTCCACGCGCTCTCCCTCGGCGCGGCCGGGGGCTCCCCCGTGCTGGCGCTGAAGCGGCGGCACTCGAAGCGAAAGCGGCGCAAGAAAGCTGAACTACTCGCCGCCGCCGCCGCCACCGCCGCGACGGCGAATGCCACGCCGCAGACGCGGAGGATCAGCAAGAGCACGGAATTGACTACTGCGACGACGGACGAGCAGAAGCGGTTCGTCGTGGAGCTTGAGGACCTCGGCGCCGAGTACCTGGAGGAGCTTCTCTGGCTGTCGGAGATCAATGGTGGTAGTGACCCTGCTGACTGATCATCCAAAAGGTTGGCAATTTGCAAGGCACCTCTTGCGAATTACATTTCGCGCGCATGCAGTTGCAATGGAACGTGCAAACTGCAAAAAGCTGCATGCAAGTATGCAACTGCAACTGGAAGTACTACTTGAACACATGCAAGTATGCAACTGCAAGTACTACTTGAACACATGCATGTGTGTTATTGCATCCTACTACTTGCTGTCTGGCTCTCTCTAGAGTGCCAATAAAGTGCAGACAATGCAACACATGCTGGAGCAAGCAACAATTTGGTGGTCACCACCATATTATACGCACAACATGCTGAAGTATTTTCAAGGTGTGTACTTTGGGCGGGGACTGAACTTTATGTCTTTATCGGACACAAGGACCTACTTCCCAAAAGCTAGCTAGCTTGATGCATGCATCTTGCCCCATGGGTACACATAATAATATTATTAAACTTTGTATGGCATGTGCCCAAATTAGTACTATCAACATTTATATGTACTAGTATGACCGTGATTTTACTCTCGAAATTCACTGTACTTAACAACTTTCTATGCTCCCTCGAGTAATTAAGGTAAAAGAGAGTAACTCAAAAATACGTTAAGCTACCATTAAACACTTTCAGCTTGTTGTTAAACGGAATACTAGCTAGTGTGTACAAGAAGATGAACTGAATGAACAAAAGGAAAATCTAGCGGGGAA] [+] EMBL AK062612 [AGCAGCTAAAAGTCAATCCACGCCACCATCGATCTCTCTATCCAATCCAAGCGCGCAAATCAATGGCAGAGCATTTCAGCCACGCCGGCATGTACATCGGCTACACGGCAGACGCCGCCGCGTCCTCCTCCTCCTCCTCCTCGTCTTCGTCGTCTTCCTCCTCGGAGATGCTTCGGTTCGACACGGGCTGGCCCGACGAGACACCTGCGCCATCCTCCGTGGCGGGGAGGAGGAGGAGCGCGGGCGGTGATCATCGTCAAGGTCGGGGACAGACGGAGGCGGCGGCGGCGTTCATCGGGGTGCGGAGGCGGCCGTGGGGCAGGTTCGCGGCGGAGATCCGGGACTCGACGCGGAACGGCGCGCGGGTGTGGATCGGCACGTTCGACAGCGCCGAGGCCGCCGCGATGGCCTACGACCAGGCCGCGCTCTCGGCGCGTGGCGCCGCCGCGGCGCTCAACTTCCCCGTGGAGCGCGTCCGCGAGTCGCTCCACGCGCTCTCCCTCGGCGCGGCCGGGGGCTCCCCCGTGCTGGCGCTGAAGCGGCGGCACTCGAAGCGAAAGCGGCGCAAGAAAGCTGAACTACTCGCCGCCGCCGCCGCCACCGCCGCGACGGCGAATGCCACGCCGCAGACGCGGAGGATCAGCAAGAGCACGGAATTGACTACTGCGACGACGGACGAGCAGAAGCGGTTCGTCGTGGAGCTTGAGGACCTCGGCGCCGAGTACCTGGAGGAGCTTCTCTGGCTGTCGGAGATCAATGGTGGTAGTGACCCTGCTGACTGATCATCCAAAAGGTTGGCAATTTGCAAGGCACCTCTTGCGAATTACATTTCGCGCGCATGCAGTTGCAATGGAACGTGCAAACTGCAAAAAGCTGCATGCAAGTATGCAACTGCAACTGGAAGTACTACTTGAACACATGCAAGTATGCAACTGCAAGTACTACTTGAACACATGCATGTGTGTTATTGCATCCTACTACTTGCTGTCTGGCTCTCTCTAGAGTGCCAATAAAGTGCAGACAATGCAACACATGCTGGAGCAAGCAACAATTTGGTGGTCACCACCATATTATACGCACAACATGCTGAAGTATTTTCAAGGTGTGTACTTTGGGCGGGGACTGAACTTTATGTCTTTATCGGACACAAGGACCTACTTCCCAAAAGCTAGCTAGCTTGATGCATGCATCTTGCCCCATGGGTACACATAATAATATTATTAAACTTTGTATGGCATGTGCCCAAATTAGTACTATCAACATTTATATGTACTAGTATGACCGTGATTTTACTCTCGAAATTCACTGTACTTAACAACTTTCTATGCTCCCTCGAGTAATTAAGGTAAAAGAGAGTAACTCAAAAATACGTTAAGCTACCATTAAACACTTTCAGCTTGTTGTTAAACGGAATACTAGCTAGTGTGTACAAGAAGATGAACTGAATGAACAAAAGGAAAATCTAGCGGGGAA] consensusID : consensus_1529#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 880 fasta sequence [AAGGGAATAATCAAACACGCCCCGTCACTTCGCCGCACACATCACAGTGATCGCAGCCGCTAAGTCAAACATTCCCAGCTCACAGAGTCACACACATGGAGCAACACAGCCACTGCTGGTACTACGGCGGCGGCATGGCTGTCACCGCAGCCGCCGGTGCCGGCGCGGCGTCGTCGACATCCTCGGAATCGCAGCCGTCTGGCTACGACTACGAGACGGCGGGGAGCGCCGAGGTGTCGGCGCCCGGCGGCGGCGGCGGGCTTCATCGGCGTGCGGAAGCGGCCGTGGGGGAGGTTCGCGGCGGAGATCAGGGACTCCACGCGGAACGGCGTGCGGGTGTGGCTCGGCACGTTCGAGACGGCCGAGGCCGCCGCGATGGCCTACGACCAGGCCGCGCTCTCGGCGCGGGGCGCGGCCGCGGCGCTCAACTTCCCCGTGGAACGCGTGCGCGAGTCGCTCCGCGCGCTCGCGCTCGGCGCGGCCGGAGGCTCGCCCGTGCTGGCGCTGAAGGGGCGGCACTCCAAGCGAAAGCGGCGGAAGAGATCAGAGCTGGCCGGTGCCACGGCGACGGCGAACAAGACGACGACGACGACGTCCGCCACGACCGGCGGGGAGCACAAGCAGATCGTCCTCGAGCTGGAGGACCTCGGCGCCGACTACCTAGAGGAGCTCCTCTGGATGTCCGAGCAAACTAGCCATTGATGATGATGCGAACGAACCTGCAAAAACATAGCTCTCGCGCGCGATCGATCGCGAGTTCAATACTTCAACTCGATCACATCCATGCCTTGCAATGCAGTGTGTGAACTCGACCGATCAGTTGGTAGTGGATTCCATGTGAAAAAAGGCTGCAACGTAACTGCTTCAAATCGTGACATAA] [+] EMBL AK108503 [AAGGGAATAATCAAACACGCCCCGTCACTTCGCCGCACACATCACAGTGATCGCAGCCGCTAAGTCAAACATTCCCAGCTCACAGAGTCACACACATGGAGCAACACAGCCACTGCTGGTACTACGGCGGCGGCATGGCTGTCACCGCAGCCGCCGGTGCCGGCGCGGCGTCGTCGACATCCTCGGAATCGCAGCCGTCTGGCTACGACTACGAGACGGCGGGGAGCGCCGAGGTGTCGGCGCCCGGCGGCGGCGGCGGGCTTCATCGGCGTGCGGAAGCGGCCGTGGGGGAGGTTCGCGGCGGAGATCAGGGACTCCACGCGGAACGGCGTGCGGGTGTGGCTCGGCACGTTCGAGACGGCCGAGGCCGCCGCGATGGCCTACGACCAGGCCGCGCTCTCGGCGCGGGGCGCGGCCGCGGCGCTCAACTTCCCCGTGGAACGCGTGCGCGAGTCGCTCCGCGCGCTCGCGCTCGGCGCGGCCGGAGGCTCGCCCGTGCTGGCGCTGAAGGGGCGGCACTCCAAGCGAAAGCGGCGGAAGAGATCAGAGCTGGCCGGTGCCACGGCGACGGCGAACAAGACGACGACGACGACGTCCGCCACGACCGGCGGGGAGCACAAGCAGATCGTCCTCGAGCTGGAGGACCTCGGCGCCGACTACCTAGAGGAGCTCCTCTGGATGTCCGAGCAAACTAGCCATTGATGATGATGCGAACGAACCTGCAAAAACATAGCTCTCGCGCGCGATCGATCGCGAGTTCAATACTTCAACTCGATCACATCCATGCCTTGCAATGCAGTGTGTGAACTCGACCGATCAGTTGGTAGTGGATTCCATGTGAAAAAAGGCTGCAACGTAACTGCTTCAAATCGTGACATAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1529#0 AGCAGCTAAAAGTCAATCCACGCCACCATCGATCTCTCTATCCAATCCAAGCG--CGCAA 58 consensus_1529#1 --AAGGGAATAATCAAAC-ACGCC-CCGTCACTTCGCCGCACACATCACAGTGATCGCAG 56 ** ** * **** * ***** ** ** * * * *** ** * **** consensus_1529#0 ATCAATGGCAGAGCATTTCAGCCACGCCGGCATGTACATCGGCTACACGGCAGACGCCGC 118 consensus_1529#1 CCGCTAAGTCAAACATTCCCAGCTCACAGAGTCACACACATGGAGCAACACAGCCACTGC 116 * * **** * * * * * *** * ** *** * * ** consensus_1529#0 CGCGTCCTCCTCCTCCTCCTCCTCGTCTTCGTCGTCTTCCTCCTCGGAGATGCTTCGGTT 178 consensus_1529#1 TGGTACTACGGCGGCGGCATGGCTGTCACCGCAGCCGCCGGTGCCGGCGCGGCGTCG--T 174 * * * * * * * *** ** * * * *** * ** *** * consensus_1529#0 CGACACGGGCTGGCCCGACGAGACACCTGCGCCATCCTCCGTGGCGGGGAGGAGGAGGAG 238 consensus_1529#1 CGACATCCTCGGAATCGC--AGCCGTCTGGCTACGACTACGAGACGGCGGGGAG------ 226 ***** * * ** ** * *** ** ** * *** * **** consensus_1529#0 CGCGGGCGGTGATCATCGTCAAGGTCGGGGACAGACGGAGGCGGCGGCGGCGTTCATCGG 298 consensus_1529#1 ----------------CGCCGAGGT-GTCGGCGCCCGGCGGCGGCGGCGGGCTTCATCGG 269 ** * **** * * * *** *********** ******** consensus_1529#0 GGTGCGGAGGCGGCCGTGGGGCAGGTTCGCGGCGGAGATCCGGGACTCGACGCGGAACGG 358 consensus_1529#1 CGTGCGGAAGCGGCCGTGGGGGAGGTTCGCGGCGGAGATCAGGGACTCCACGCGGAACGG 329 ******* ************ ****************** ******* *********** consensus_1529#0 CGCGCGGGTGTGGATCGGCACGTTCGACAGCGCCGAGGCCGCCGCGATGGCCTACGACCA 418 consensus_1529#1 CGTGCGGGTGTGGCTCGGCACGTTCGAGACGGCCGAGGCCGCCGCGATGGCCTACGACCA 389 ** ********** ************* * ***************************** consensus_1529#0 GGCCGCGCTCTCGGCGCGTGGCGCCGCCGCGGCGCTCAACTTCCCCGTGGAGCGCGTCCG 478 consensus_1529#1 GGCCGCGCTCTCGGCGCGGGGCGCGGCCGCGGCGCTCAACTTCCCCGTGGAACGCGTGCG 449 ****************** ***** ************************** ***** ** consensus_1529#0 CGAGTCGCTCCACGCGCTCTCCCTCGGCGCGGCCGGGGGCTCCCCCGTGCTGGCGCTGAA 538 consensus_1529#1 CGAGTCGCTCCGCGCGCTCGCGCTCGGCGCGGCCGGAGGCTCGCCCGTGCTGGCGCTGAA 509 *********** ******* * ************** ***** ***************** consensus_1529#0 GCGGCGGCACTCGAAGCGAAAGCGGCGCAAGAAAGCTGAACTACTCGCCGCCGCCGCCGC 598 consensus_1529#1 GGGGCGGCACTCCAAGCGAAAGCGGCGGAAGAGATCAGAGCTG------------GCCGG 557 * ********** ************** **** * * ** ** **** consensus_1529#0 CACCGCCGCGACGGCGAATGCCACGCCGCAGACGCGGAGGATCAGCAAGAGCACGGAATT 658 consensus_1529#1 TGCCACGGCGACGGCGAACAAGACGACGACGACGA------------------------C 593 ** * *********** *** ** **** consensus_1529#0 GACTACTGCGACGACGGACGAGCAGAAGCGGTTCGTCGTGGAGCTTGAGGACCTCGGCGC 718 consensus_1529#1 GTCCGCCACGACCGGCGGGGAGCACAAGCAGATCGTCCTCGAGCTGGAGGACCTCGGCGC 653 * * * **** * ***** **** * ***** * ***** ************** consensus_1529#0 CGAGTACCTGGAGGAGCTTCTCTGGCTGTCGGAGATCAATGGTGGTAG-TGACCCTGCTG 777 consensus_1529#1 CGACTACCTAGAGGAGCTCCTCTGGATGTCCGAGCAAACTAGCCATTGATGATGATGC-G 712 *** ***** ******** ****** **** *** * * * * * *** *** * consensus_1529#0 ACTGATCATCCAAAAGGTTGGCAATTTGCAAGGCACCTCTTGCGAATTACATTTCGCGCG 837 consensus_1529#1 AACGAACCTGCAAAAACATAGCT-CTCGCGCGCGATCGATCGCGAGTTCAATACTTCA-- 769 * ** * * ***** * ** * ** * * * * **** ** ** * consensus_1529#0 CATGCAGTTGCAATGGAACGTGCAAACTGCAAAAAGCTGCATGCAAGTATGCAACTGCAA 897 consensus_1529#1 -ACTCGATCACATCCATGCCT-TGCAATGCAGTGTG-TGAACTCGACCGATCAGTTGGTA 826 * * * ** * * * **** * ** * * * ** ** * consensus_1529#0 CTGGAAGTACTACTTGAACACATGCAAGTATGCAACTGCAAGTACTACTTGAACACATGC 957 consensus_1529#1 GTGGA--TTCCATGTGAAAAAAGGCTGCAACGTAACTGCTTCAAATCGTGACATAA---- 880 **** * * * **** * * ** * * ****** * * * * * consensus_1529#0 ATGTGTGTTATTGCATCCTACTACTTGCTGTCTGGCTCTCTCTAGAGTGCCAATAAAGTG 1017 consensus_1529#1 ------------------------------------------------------------ consensus_1529#0 CAGACAATGCAACACATGCTGGAGCAAGCAACAATTTGGTGGTCACCACCATATTATACG 1077 consensus_1529#1 ------------------------------------------------------------ consensus_1529#0 CACAACATGCTGAAGTATTTTCAAGGTGTGTACTTTGGGCGGGGACTGAACTTTATGTCT 1137 consensus_1529#1 ------------------------------------------------------------ consensus_1529#0 TTATCGGACACAAGGACCTACTTCCCAAAAGCTAGCTAGCTTGATGCATGCATCTTGCCC 1197 consensus_1529#1 ------------------------------------------------------------ consensus_1529#0 CATGGGTACACATAATAATATTATTAAACTTTGTATGGCATGTGCCCAAATTAGTACTAT 1257 consensus_1529#1 ------------------------------------------------------------ consensus_1529#0 CAACATTTATATGTACTAGTATGACCGTGATTTTACTCTCGAAATTCACTGTACTTAACA 1317 consensus_1529#1 ------------------------------------------------------------ consensus_1529#0 ACTTTCTATGCTCCCTCGAGTAATTAAGGTAAAAGAGAGTAACTCAAAAATACGTTAAGC 1377 consensus_1529#1 ------------------------------------------------------------ consensus_1529#0 TACCATTAAACACTTTCAGCTTGTTGTTAAACGGAATACTAGCTAGTGTGTACAAGAAGA 1437 consensus_1529#1 ------------------------------------------------------------ consensus_1529#0 TGAACTGAATGAACAAAAGGAAAATCTAGCGGGGAA 1473 consensus_1529#1 ------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||