These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15310#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 930 fasta sequence [ACCCCAAATTGGCCCGAAAGCTGCCTCCTTTTTCCTCCTCCTAACCACCGCTCCGGCCTCTCCATCTCCCGCCGCTCGCCGTCGCCGCCGCCGCCCGCCATGTGGAAGCGCGCGACCTCCGTCCTCCTCCACCACCGCTCCGCCCTCACCCGCCGCTCCCCGGCGATCGGCGGCGGCGTCCTTCCCCGTGCTCTCTTCTTCTCCACGCTCGATGCGGCGCAGGCGAGGACGAGGGTGGAGGACGTGATGCCGATCGCCACCGGGCTCGAGCGCGAGGAGATCGCCGCCGAGCTCCAGGGGAAGAAGAGGTTTGATATGGACGCGCCCGTCGGGCCCTTTGGTACCAAGGAAGCTCCAGCTGTTATTCAGTCATACTACAACAAAAGGATTGTTGGTTGTCCCGGTGGTGAAGGAGAGGACGAGCATGATGTCGTGTGGTTTTGGTTGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGACGATCACCACCATCATTAAGGTTGCAGAAGTCACCTCTAGCAATAAAAACACTGGATATGGCCATATCCATGTCAACTCTCAATTCAGATGACTTGGAGCAGCAGTGGATTTTGGAAAAACAAAGTTTGTCTTTTTAGAGATTTGTTCATGCAAATAACAGGATTCAGTAAACAATGATATGCAATTCTCTTTTTCAGCACACCTTAGTCGAATTCAAAATAGGTATGTTTGTTTGTTTGTCTTGATGGATGATTCCATGTTCAATGGCCACCTGGACCATTTATTTTGGTGTATGATCTGTTATCTGAACATTTCACAAACCTTGGTCCTGTTCAATTCAGTTTAAACAAATGAAGTCAGCATTCTGATGAAAAAAAAAAAAAA] [+] EMBL AU197817 [ACCCCAAATTGGCCCGAAAGCTGCCTCCTTTTTCCTCCTCCTAACCACCGCTCCGGCCTCTCCATCTCCCGCCGCTCGCCGTCGCCGCCGCCGCCCGCCATGTGGAAGCGCGCGACCTCCGTCCTCCTCCACCACCGCTCCGCCCTCACCCGCCGCTCCCCGGCGATCGGCGGCGGCGTCCTTCCCCGTGCTCTCTTCTTCTCCACGCTCGATGCGGCGCAGGCGAGGACGAGGGTGGAGGACGTGATGCCGATCGCCACCGGGCTCGAGCGCGAGGAGATCGCCGCCGAGCTCCAGGGGAAGAAGAGGTTTGATATGGACGCGCCCGTCGGGCCCTTTGGTACCAAGGAAGCTCCAGCTGTTATTCAGTCATACTACAACAAAAGGATTGNTGGTTGTCCCGGTGGTGAAGGAGAGGACGAG ] [+] EMBL AU057455 [ACCCCAAATTGGCCCGAAAGCTGCCTCCTTTTTCCTCCTCCTAACCACCGCTCCGGCCTCTCCATCTCCCGCCGCTCGCCGTCGCCGCCGCCGCCCGCCATGTGGAAGCGCGCGACCTCCGTCCTCCTCCACCACCGCTCCGCCCTCACCCGCCGCTCCCCGGCGATCGGCGGCGGCGTCCTTCCCCGTGCTCTCTTCTTCTCCACGCTCGATGCGGCGCAGGCGAGGACGAGGGTGGAGGACGTGATGCCGATCGCCACCGGGCTCGAGCGCGAGGAGATCGCCGCCGAGCTCCAGGGGAAGAAGAGGTTTGATATGGACGCGCCCGTCGGGCCCTTTGGTACCAAGGAAGCTCCAGCTGTTATTCAGTCATACTACAACAAAAGGATTGTTGGTTGTCCCGGTGGTGAAGGAGAGGACGA ] [+] EMBL AK071423 [ TCCTCCTAACCACCGCTCCGGCCTCTCCATCTCCCGCCGCTCGCCGTCGCCGCCGCCGCCCGCCATGTGGAAGCGCGCGACCTCCGTCCTCCTCCACCACCGCTCCGCCCTCACCCGCCGCTCCCCGGCGATCGGCGGCGGCGTCCTTCCCCGTGCTCTCTTCTTCTCCACGCTCGATGCGGCGCAGGCGAGGACGAGGGTGGAGGACGTGATGCCGATCGCCACCGGGCTCGAGCGCGAGGAGATCGCCGCCGAGCTCCAGGGGAAGAAGAGGTTTGATATGGACGCGCCCGTCGGGCCCTTTGGTACCAAGGAAGCTCCAGCTGTTATTCAGTCATACTACAACAAAAGGATTGTTGGTTGTCCCGGTGGTGAAGGAGAGGACGAGCATGATGTCGTGTGGTTTTGGTTGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGACGATCACCACCATCATTAAGGTTGCAGAAGTCACCTCTAGCAATAAAAACACTGGATATGGCCATATCCATGTCAACTCTCGATTCAGATGACTTGGAGCAGCAGTGGATTTTGGAAAAACAAAGTTTGTCTTTTTAGAGATTTGTTCATGCAAATAACAGGATTCAGTAAACAATGATATGCAATTCTCTTTTTCAGCACACCTTAGTCGAATTCAAAATAGGTATGTTTGTTTGTTTGTCTTGATGGATGATTCCATGTTCAATGGCCACCTGGACCATTTATTTTGGTGTATGATCTGTTATCTGAACATTTCACAAACCTTGGTCCTGTTCAATTCAGTTTAAACAAATGAAGT ] [+] EMBL CA767047 [ gagacaAGGGGAAGAAGAGGTTTGATATGGACGCGCCCGTCGGGCCCTTTGGTACCAAGGAAGCTCCAGCTGTTATTCAGTCATACTACAACAAAAGGATTGTTGGTTGTCCCGGTGGTGAAGGAGAGGACGAGCATGATGTCGTGTGGTTTTGGTTGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGACGATCACCACCATCATTAAGGTTGCAGAAGTCACCTCTAGCAATAAAAACACTGGATATGGCCATATCCATGTCAACTCTCAATTCAGATGACTTGGAGCAGCAGTGGATTTTGGAAAAACAAAGTTTGTCTTTTTAGAGATTTGTTCATGCAAATAACAGGATTCAGTAAACAATGATATGCAATTCTCTTTTTCAGCACACCTTAGTCGAATTCAAAATAGGTATGTTTGTTTGTTTGTCTTGATGGATGATTCCATGTTCAATGGCCACCTGGACCATTTATTTTGGTGTATGATCTGTTATCTGAACATTTCACAAGCCTTGGTCCTGTTCAATTCAGTTTAAACAAATGAAGTCAGCATTCTGATGAAAAAAAAAAAAAA] [+] EMBL CB096789 [ GTTTGATATGGACGCGCCCGTCGGGCCCTTTGGTACCAAGGAAGCTCCAGCTGTTATTCAGTCATACTACAACAAAAGGATTGTTGGTTGTCCCGGTGGTGAAGGAGAGGACGAGCATGATGTCGTGTGGTTTTGGTTGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGACGATCACCACCATCATTAAGGTTGCAGAAGTCACCTCTAGCAATAAAAACACTGGATATGGCCATATCCATGTCAACTCTCAATTCAGATGACTTGGAGCAGCAGTGGATTTTGGAAAAACAAAGTTTGTCTTTTTAGAGATTTGTTCATGCAAATAACAGGATTCAGTAAACAATGATATGCAATTCTCTTTTTCAGCACACCTTAGTCGAATTCAAAATAGGTATGTTTGTTTGTTTGTCTTGATGGATGATTCCATGTTCAATGGCCACCTGGACCATTTATTTTGGTGTATGATCTGTTATCTGAACATTTCACAAACCTTGGTCCTGTTCAATTCAGTTTAAACAAATGAAGTCAGCATTCTGA ] [+] EMBL AU197818 [ TTTGATATGGACGCGCCCGTCGGGCCCTTTGGTACCAAGGAAGCTCCAGCTGTTATTCAGTCATACTACAACAAAAGGATTGTTGGTTGTCCCGGTGGTGAAGGAGAGGACGAGCATGATGTCGTGTGGTTTTGGTTGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGACGATCACCNCCATCATTAAGGTTGCAGAAGTCACCTCTAGCAATAAAAACNCTGGATATGGCCATATCCATGTCAACTNTCAATTCAGATGACTTGGAGCAGCAGTGGATTTTGGAAAAACAAAGTTTGTCTTTTTAGAGATTTGTTCATGCAAATAACAGGATTCAGTAAACAATGATATGCAATTNTNTTTTTCAaaaaa ] [+] EMBL AU057456 [ TTGGTACCAAGGAAGCTCCAGCTGTTATTCAGTCATACTACAACAAAAGGATTGTTGGTTGTCCCGGTGGTGAAGGAGAGGACGAGCATGATGTCGTGTGGTTTTGGTTGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGACGATCACCACCATCATTAAGGTTGCAGAAGTCACCTCTAGCAATAAAAACACTGGATATGGCCATATCCATGTCAACTCTCAATTCAGATGACTTGGAGCAGCAGTGGATTTTGGAAAAACAAAGTTTGTCTTTTTAGAGATTTGTTCATGCAAATAACAGGATTCAGTAAACAATGATATGCAATTCTCTTTTTCAaaaaa ] [-] EMBL CF306890 [ GATGTCGTGTGGTTTTGG TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGACGATCACCACCATCATTAAGGTTGCAGAAGTCACCTCTAGCAATAAAAACACTGGATATGGCCATATCCATGTCAACTCTCAATTCAGATGACTTGGAGCAGCAGTGGATTTTGGAAAAACAAAGTTTGTCTTTTTAGAGATTTGTTCATGCAAATAACAGGATTCAGTAAACAATGATATGCAATTCTCTTTTTCAGCACACCTTAGTCGAATTCAAAATAGGTATGTTTGTTTGTTTGTCTTGATGGATGATTCCATGTTCAATGGCCACCTGGACCATTTATTTTGGTGTATGATCTGTTATCTGAACATTTCACAAACCTTGGTCCTGTTCAATTCAGTTTAAACAAATGAAGTCAGCATTCTGATGAAAAAA ] consensusID : consensus_15310#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 853 fasta sequence [TTTCTCATGACATTTCCCCTCAGACTTGCATTAGGTGTGATCTGATAAGGTTATCAGCACATTAATGGGCATCATTTTCATTCTGTTTTGGCCTGTTGATGAATGGTACTGCTCTTTAGCGTGTTGCATCTAACCTTGATTTGGTCCCTTTGTACCTTTTGTGTCACTGTTCAGTTTAGTTCATTCCACTCCTGCGTGATCGAACTGGACTAATATTTTTTCCATGTTGTATAGGAAGCTCCAGCTGTTATTCAGTCATACTACAACAAAAGGATTGTTGGTTGTCCCGGTGGTGAAGGAGAGGACGAGCATGATGTCGTGTGGTTTTGGTTGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGACGATCACCACCATCATTAAGGTTGCAGAAGTCACCTCTAGCAATAAAAACACTGGATATGGCCATATCCATGTCAACTGTCAATTCAGATGACTTGGAGCAGCAGTGGATTTTGGAAAAACAAAGTTTGTCTTTTTAGAGATTTGTTCATGCAAATAACAGGATTCAGTAAACAATGATATGCAATTCTCTTTTTCAGCACACCTTAGTCGAATTCAAAATAGGTATGTTTGTTTGTTTGTC-TTGATGGATGATTC-CATGTTCAATGGCCACCTGGACCATTTATTTTGGTGTATGATCTGTTATCTGAACATTTCACAAACCTTGGTCCTGTTCAATTCAGTTTAAACAAATGAAGTCAGCATTCTGATGATCCTTCTAAAAACAGCTATTCCCTTTAGTGAGGTAATTTAGGTGCCTGCC] [-] EMBL CB631578 [TTTCTCATGACATTTCCCCTCAGACTTGCATTAGGTGTGATCTGATAAGGTTATCAGCACATTAATGGGCATCATTTTCATTCTGTTTTGGCCTGTTGATGAATGGTACTGCTCTTTAGCGTGTTGCATCTAACCTTGATTTGGTCCCTTTGTACCTTTTGTGTCACTGTTCAGTTTAGTTCATTCCACTCCTGCGTGATCGAACTGGACTAATATTTTTTCCATGTTGTATAGGAAGCTCCAGCTGTTATTCAGTCATACTACAACAAAAGGATTGTTGGTTGTCCCGGTGGTGAAGGAGAGGACGAGCATGATGTCGTGTGGTTTTGGTTGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGACGATCACCACCATCATTAAGGTTGCAGAAGTCACCTCTAGCAATAAAAACACTGGATATGGCCATATCCATGTCAACTGTCAATTCAGATGACTTGGAGCAGCAGTGGATTTTGGAAAAACAAAGTTTGTCTTTTTAGAGATTTGTTCATGCAAATAACAGGATTCAGTAAACAATGATATGCAATTCTCTTTTTCAGCACACCTTAGTCGAATTCAAAATAGGTATGTTTGTTTGTTTGTC TTGATGGATGATTC CATGTTCAATGGCCACCTGGACCATTTATTTTGGTGTATGATCTGTTATCTGAACATTTCACAAACCTTGGTCCTGTTCAATTCAGTTTAAACAAATGAAGTCAGCATTCT ] [-] EMBL CB631539 [ CTCATGACATTTCCCCTCAGACTTGCATTAGGTGTGATCTGATAAGGTTATCAGCACATTAATGGGCATCATTTTCATTCTGTTTTGGCCTGTTGATGAATGGTACTGCTCTTTAGCGTGTTGCATCTAACCTTGATTTGGTCCCTTTGTACCTTTTGTGTCACTGTTCAGTTTAGTTCATTCCACTCCTGCGTGATCGAACTGGACTAATATTTTTTCCATGTTGTATAGGAAGCTCCAGCTGTTATTCAGTCATACTACAACAAAAGGATTGTTGGTTGTCCCGGTGGTGAAGGAGAGGACGAGCATGATGTCGTGTGGTTTTGGTTGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGACGATCACCACCATCATTAAGGTTGCAGAAGTCACCTCTAGCAATAAAAACACTGGATATGGCCATATCCATGTCAACTGTCAATTCAGATGACTTGGAGCAGCAGTGGATTTTGGAAAAACAAAGTTTGTCTTTTTAGAGATTTGTTCATGCAAATAACAGGATTCAGTAAACAATGATATGCAATTCTCTTTTTCAGCACACCTTAGTCGAATTCAAAATAGGTATGTTTGTTTGTTTGTC TTGATGGATGATTC CATGTTCAATGGCCACCTGGACCATTTATTTTGGTGTATGATCTGTTATCTGAACATTTCACAAACCTTGGTCCTGTTCAATTCAGTTTAAACAAATGAAGTCAGCATTC ] [+] EMBL CB096248 [ GAAAAACAAAGTTTGTCTTTTTAGAGATTTGTTCATGCAAATAACAGGATTCAGTAAACAATGATATGCAATTCTCTTTTTCAGCACACCTTAGTCGAATTCAAAATAGGTATGTTTGTTTGTTTGTC TTGATGGATGATTC CATGTTCAATGGCCACCTGGACCATTTATTTTGGTGTATGATCTGTTATCTGAACATTTCACAAGCCTTGGTCCTGTTCAATTCAGTTTAAACAAATGAAGTCAGCATTCTG ] [+] EMBL BE230360 [ TTGTTCATGCCAATAACAGGATTCAGTAAACAATGATATGCAATTCTCTTTTTCAGCACACCTTAATCGAATTCAAAATAGGTATGNTTGGTTGGTTGGC CTGATGGATGATTC CATGTTCAATGGCCACCTGGACCATTTATTTTGGTGGATGATCTGGTATCTGAACATTTCACAAACCTTGGTCCTGTTCAATTCAGTTTAAACAAATGAAGTCAGCATT ] [-] EMBL BU673824 [ TGTTTGTTTGTTTGTC TTGATGGATGATTC CATGTTCAATGGCCACCTGGACCATTTATTTTGGTGTATGATCTGTTATCTGAACATTTCACAAACCTTGGTCCTGTTCAATTCAGTTTAAACAAATG NGTCAGCATTCTGATGATCCTTCTAAAAACAGCTATTCCCTTTAGTGAGGTAATTTAGGTGCCTGCC] [-] EMBL BI306064 [ TGTTTGTTTGTTTGTC TTGATGGATGATTC CATGTTCAATGGCCACCTGGACCATTTATTTTGGTGTATGATCTGTTATCTGAACATTTCACAAACCTTGGTCCTGTTCAATTCAGTTTAAACAAATGAAGTCAGCATTCTGATGATCCT ] [-] EMBL BI305540 [ TGTTTGTTTGTTTGTC TTGATGGATGATTC CATGTTCAATGGCCACCTGGACCATTTATTTTGGTGTATGATCTGTTATCTGAACATTTCACAAACCTTGGTCCTGTTCAATTCAGTTTAAACAAATGAAGTCAGCATTCTGATGATCCT ] [-] EMBL CB965751 [ TGTTTGTTTGTTTGTC TTGATGGATGATTC CATGTTCAATGGCCACCTGGACCATTTATTTTGGTGTATGATCTGTTATCTGAACATTTCACAAACCTTGGTCCTGTTC ATTCAGTTTAAAC AATGAAGTCAGCATTCTGAT ] [-] EMBL BU672844 [ TGTTTGTCATTGATGGATGATTCACATGTTCAATGGCCACCTGGACCATTTATTTTGGTGTATGATCTGTTATCTGAACATTTCACAAACCTTGGTCCTGTTCAATTCAGTTTAAACAAATGAAGTCAGCATTCTGATGATCCTTCTAAAACAAGCTA TCCC TTAGTGAGGGGGCTTAGCTGCact ] consensusID : consensus_15310#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 740 fasta sequence [GCCGCTCGCCGTCGCCGCCGCCGCCGCCGCCCGCCATGTGGAAGCGCGCGACCTCCGTCCTCCTCCACCACCGCTCCGCCCTCACCCGCCGCTCCCCGGCGATCGGCGGCGGCGTCCTTCCCCGTGCTCTCTTCTTCTCGACGCTCGATGCGGCGCATGCGAGGACGAGGGTGGAGGACGTGATGCCGATCGCCACCGGGCTCGAGCGCGAGGAGATCGCCGCCGAGCTCCAGGGGAAGAAGAGGTTTGATATGGACGCGCCCGTCGGGCCCTTTGGTACCAAGGTGAGATGAGAGGCTGAGAGCTTTCCATTTCACATCAATTCCATGGATGTGTTGACCCGTGTATTTGAGAGCTATTGAATTGATTGGTTAGATGGAGTGTGTGATTGCTGACTGAATTAGTGCTGATGTGTAGTGCTTAAGACTTGTGGCCATGGATGCAACGCTCTCTTAATAGCTTGACATGTTCCCCTCTGATATTAGGTGATAAGCTTCTTTGGCTCAACGGAATCGGCGAAGAGATAGGTGTTAGTTTCTGATGTTGCATATGCAGCATCTGGGTCACGGCAGGGATTTTGTTCACTGAATATGAATATGTGAGATTGTACCATTGGGTCAGCTACCGGTTCTTTTCCGTACATAGGAAAGATTTTTATGCACAAACATTACGCAAAAGTGCCACACACATACGTTTAATATGGTCATTACTGCGTAGGTAATTCTGTTTATGTCTACACT] [+] EMBL CB631577 [GCCGCTCGCCGTCGCCGCCGCCGCCGCCGCCCGCCATGTGGAAGCGCGCGACCTCCGTCCTCCTCCACCACCGCTCCGCCCTCACCCGCCGCTCCCCGGCGATCGGCGGCGGCGTCCTTCCCCGTGCTCTCTTCTTCTCGACGCTCGATGCGGCGCATGCGAGGACGAGGGTGGAGGACGTGATGCCGATCGCCACCGGGCTCGAGCGCGAGGAGATCGCCGCCGAGCTCCAGGGGAAGAAGAGGTTTGATATGGACGCGCCCGTCGGGCCCTTTGGTACCAAGGTGAGATGAGAGGCTGAGAGCTTTCCATTTCACATCAATTCCATGGATGTGTTGACCCGTGTATTTGAGAGCTATTGAATTGATTGGTTAGATGGAGTGTGTGATTGCTGACTGAATTAGTGCTGATGTGTAGTGCTTAAGACTTGTGGCCATGGATGCAACGCTCTCTTAATAGCTTGACATGTTCCCCTCTGATATTAGGTGATAAGCTTCTTTGGCTCAACGGAATCGGCGAAGAGATAGGTGTTAGTTTCTGATGTTGCATATGCAGCATCTGGGTCACGGCAGGGATTTTGTTCACTGAATATGAATATGTGAGATTGTACCATTGGGTCAGCTACCGGTTCTTTTCCGTACATAGGAAAGATTTTTATGCACAAACATTACGCAAAAGTGCCACACACATACGTTTAATATGGTCATTACTGCGTAGGTAATTCTGTTTATGTCTACACT] consensusID : consensus_15310#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 733 fasta sequence [GCCCCCTTAAGGCGCCGCCGCCGCCGCCGCCCGCCATGTGGAAGCGCGCGACCTCCGTCCTCCTCCACCACCGCTCCCCCCTCACCCGCCGCTCCCCGGCGATCGGCGGCGGCGTCCTTCCCCGTGCTCTCTTCTTCTCCACGCTCGATGCGGCGCAGGCGAGGACGAGGGTGGAGGACGTGATGCCGATCGCCACCGGGCTCGAGCGCGAGGAGATCGCCGCCGAGCTCCAGGGGAAGAAGAGGTTTGATATGGACGCGCCCGTCGGGCCCTTTGGTACCAAGGTGAGATGAGAGGCTGAGAGCTTTCCATTTCACATCAATTCCATGGATGTTTTGACCCGTGTATTTGAGAGCTATTGAATTGATTGGTTAGATGGAGTGTGTGATTGCTGACTGAATTAATGCTGATGTGTAGTGCTTAAGACTTGTGGCCATGGATGCAACGCTCTCTTAATAGCTTGACATGTTCCCCTCTGATATTAGGTGATAAGCTTCTTTGGCTCAACGGAATCGGCGAAGAGATAGGTGTTAGTTTCTGATGTTGCAGATGCAGCAGCTGGGTCACGGCAGGGATTTTGTTCACTGAATATGAATATGTGAGATTGTAGCATTGGTTCAGCTACCGGTTCTTTTCCCTACATAGGAAAGATTTTTATGCACAAACATTAGGCAAAAGTTCAACACACATACATTTAATAAAGTCATTACAACATAGGTAATTCTGTTTATGT] [+] EMBL CB631538 [GCCCCCTTAAGGCGCCGCCGCCGCCGCCGCCCGCCATGTGGAAGCGCGCGACCTCCGTCCTCCTCCACCACCGCTCCCCCCTCACCCGCCGCTCCCCGGCGATCGGCGGCGGCGTCCTTCCCCGTGCTCTCTTCTTCTCCACGCTCGATGCGGCGCAGGCGAGGACGAGGGTGGAGGACGTGATGCCGATCGCCACCGGGCTCGAGCGCGAGGAGATCGCCGCCGAGCTCCAGGGGAAGAAGAGGTTTGATATGGACGCGCCCGTCGGGCCCTTTGGTACCAAGGTGAGATGAGAGGCTGAGAGCTTTCCATTTCACATCAATTCCATGGATGTTTTGACCCGTGTATTTGAGAGCTATTGAATTGATTGGTTAGATGGAGTGTGTGATTGCTGACTGAATTAATGCTGATGTGTAGTGCTTAAGACTTGTGGCCATGGATGCAACGCTCTCTTAATAGCTTGACATGTTCCCCTCTGATATTAGGTGATAAGCTTCTTTGGCTCAACGGAATCGGCGAAGAGATAGGTGTTAGTTTCTGATGTTGCAGATGCAGCAGCTGGGTCACGGCAGGGATTTTGTTCACTGAATATGAATATGTGAGATTGTAGCATTGGTTCAGCTACCGGTTCTTTTCCCTACATAGGAAAGATTTTTATGCACAAACATTAGGCAAAAGTTCAACACACATACATTTAATAAAGTCATTACAACATAGGTAATTCTGTTTATGT] consensusID : consensus_15310#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 721 fasta sequence [CGAGGGAGTTCCCCCCGAGCTCAGGGGAAGAAGAGGTTTGATATGGACGCGCCCTCGGGCCCTTTGGTACCAAGGAAGCTCCAGCCTGTTGATTCAGTCATACTACAACAAAGGATTGTTTGTTGTCCCGGTGGGTGTAAGGGAGAGGACGAGCATGATGTCGTGTGGTTTTGTTGGAGAAAAAGGCCATAACCCAACCATTGGAATGCCCCTGTTCTTGCACCTCCAAGTATTTTCCTCCGCCTTTGGAAGGTGTATAGGAAGAAAGGAGGAGATTCCTGATTGGGCCATGACCGATGGACCGGACCGATTCCACCCCCCAATCCATTAAGGGTTTCCAGAAGTTCCACCCTCTTAGCCAATGATGAAGAACCCCGGGATTATGCCCATAATCCATGGTTCAACCTGTTCAATTCAGATGACTTGGACCACCACGTGGATTTTGGAAAAACAAGTTTGTCTTTTTAGAGATTTGTTCCATGCCAAATAACCAGGATTCAGTAAACAATGGAGTAGCCAATTCTCGTTTTCCAGCACACCCTTAGTCGAATGCGAAGAATAGGTATGTTTGTTTGTTTGTCTTGATGGGATGATCCAGGTTCAATGGCCACCCTGGACCATTTATTTGGGTGTATGATCTGTTATCGGACCATTTCACAAACCTGGGTCCTGTTCAATCCAGTTTAAACAAATGAAGTCACCATTCTGATGAAAAAAAAAA] [+] EMBL BI800170 [CGAGGGAGTTCCCCCCGAGCTCAGGGGAAGAAGAGGTTTGATATGGACGCGCCCTCGGGCCCTTTGGTACCAAGGAAGCTCCAGCCTGTTGATTCAGTCATACTACAACAAAGGATTGTTTGTTGTCCCGGTGGGTGTAAGGGAGAGGACGAGCATGATGTCGTGTGGTTTTGTTGGAGAAAAAGGCCATAACCCAACCATTGGAATGCCCCTGTTCTTGCACCTCCAAGTATTTTCCTCCGCCTTTGGAAGGTGTATAGGAAGAAAGGAGGAGATTCCTGATTGGGCCATGACCGATGGACCGGACCGATTCCACCCCCCAATCCATTAAGGGTTTCCAGAAGTTCCACCCTCTTAGCCAATGATGAAGAACCCCGGGATTATGCCCATAATCCATGGTTCAACCTGTTCAATTCAGATGACTTGGACCACCACGTGGATTTTGGAAAAACAAGTTTGTCTTTTTAGAGATTTGTTCCATGCCAAATAACCAGGATTCAGTAAACAATGGAGTAGCCAATTCTCGTTTTCCAGCACACCCTTAGTCGAATGCGAAGAATAGGTATGTTTGTTTGTTTGTCTTGATGGGATGATCCAGGTTCAATGGCCACCCTGGACCATTTATTTGGGTGTATGATCTGTTATCGGACCATTTCACAAACCTGGGTCCTGTTCAATCCAGTTTAAACAAATGAAGTCACCATTCTGATGAAAAAAAAAA] consensusID : consensus_15310#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 174 fasta sequence [TGTTTGTTTGTTTGTCTTGATGGATGATTCCATGTTCAATGGCCACCTGGACCATTTATTTTGGTGTATGATCTGTTATCTGACATTTCACGAGCCTTGGTCCTGTTCATTCAGTTTAACAATGAAGTGCAGCATTCTGATGATCCGTTGCGTGAGGAGCGCGTAGTTCCCTTT] [-] EMBL CB966845 [TGTTTGTTTGTTTGTCTTGATGGATGATTCCATGTTCAATGGCCACCTGGACCATTTATTTTGGTGTATGATCTGTTATCTGACATTTCACGAGCCTTGGTCCTGTTCATTCAGTTTAACAATGAAGTGCAGCATTCTGATGATCCGTTGCGTGAGGAGCGCGTAGTTCCCTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15310#1 ------------------------------------------------------------ consensus_15310#5 ------------------------------------------------------------ consensus_15310#4 ------------------------------------------------------------ consensus_15310#0 ACCCCAAATTGGCCCGAAAGCTGCCTCCTTTTTCCTCCTCCTAACCACCGCTCCGGCCTC 60 consensus_15310#2 ------------------------------------------------------------ consensus_15310#3 ------------------------------------------------------------ consensus_15310#1 ------------------------------------------------TTTCTCATGACA 12 consensus_15310#5 ------------------------------------------------------------ consensus_15310#4 ------------------------------------------------------------ consensus_15310#0 TCCATCTCCCGCCGCTCGCCGTCGCCGCCGCCGCCCGCCATGTGGAAGCGCGCGACCTCC 120 consensus_15310#2 ------------------------------------------------------------ consensus_15310#3 ------------------------------------------------------------ consensus_15310#1 TTTCCCCTCAGACTTGCATTAGGTGTGATCTGATAAGGTTATCAGCACATTAATGGGCAT 72 consensus_15310#5 ------------------------------------------------------------ consensus_15310#4 ------------------------------------------------------------ consensus_15310#0 GTCCTCCTCCACCACCGCTCCGCCCTCACCCGCCGCTCCCCGGCGATCGGCGGCGGCGTC 180 consensus_15310#2 ------------------------------------------------------------ consensus_15310#3 ------------------------------------------------------------ consensus_15310#1 CATTTTCATTCTGTTTTGGCCTGTTGATGAATGGTACTGCTCTTTAGCGTGTTGCATCTA 132 consensus_15310#5 ------------------------------------------------------------ consensus_15310#4 ---------------CGAGGGAGTTCCCCCCGAGCTCAGGGGAAGAAGAGGTTTGATATG 45 consensus_15310#0 CTTCCCCGTGCTCTCTTCTTCTCCACGCTCGATGCGGCGCAGGCGAGGACGAGGGTGGAG 240 consensus_15310#2 ----------------------GCCGCTCGCCGTCGCCGCCGCCGCCGCCGCCCGCCATG 38 consensus_15310#3 ----------------------GCCCCCTTAAGGCGCCGCCGCCGCCGCCGCCCGCCATG 38 consensus_15310#1 ACCTTGATTT-GGTCCCTTTGTACCTTTTGTGTCACTGTTCAGTTTAGTTCATTCCACTC 191 consensus_15310#5 ------------------------------------------------------------ consensus_15310#4 GACGCGCCCTCGGGCCCTTTGGTACCAAGGAAGCTCCAGCCTGTTGATTCAGTCATACTA 105 consensus_15310#0 GACGTGATGCCGATCGCCACCGGGCTCGAGCGCGAGGAGATCGCCGCCGAGCTCCAGGGG 300 consensus_15310#2 TGGAAGCGCGCGACCTCCGTCCTCCTCCACCACCGCT--CCGCCCTCACCCGCCGCTCCC 96 consensus_15310#3 TGGAAGCGCGCGACCTCCGTCCTCCTCCACCACCGCT--CCCCCCTCACCCGCCGCTCCC 96 consensus_15310#1 CTGCGTGATCGAACT--GGACTAATATTTTTT---CCATGTTGTATAGGAAGCTCCAGCT 246 consensus_15310#5 ------------------------------------------------------------ consensus_15310#4 CAACAAAGGATTGTT--TG-TTGTCCCGGTGG---GTGTAAGGGAGAGGACGAGCATGAT 159 consensus_15310#0 AAGAAGAGGTTTGATATGGACGCGCCCGTCGGGCCCTTTGGTACCAAGGAAGCTCCAGCT 360 consensus_15310#2 CGGCGATCGGCGGCG-----GCGTCCTTCCCCGTGCTCTCTTCTTCTCGACGCTCGATGC 151 consensus_15310#3 CGGCGATCGGCGGCG-----GCGTCCTTCCCCGTGCTCTCTTCTTCTCCACGCTCGATGC 151 consensus_15310#1 GTTATTCAGTCATACTACAACAAAAGGATTGTTGGTTGTCCCGGTGGTGAAGGAGAGGAC 306 consensus_15310#5 ------------------------------------------------------------ consensus_15310#4 GTCGTGTGGTTTTGTTGGAGAAAAAGGCCATAACCCAACCATTGGAATGCCCCTGTTCTT 219 consensus_15310#0 GTTATTCAGTCATACTACAACAAAAGGATTGTTGGTTGTCCCGGTGGTGAAGGAGAGGAC 420 consensus_15310#2 GGCGCATGCGAGGACGAGGGTGGAGGACGTGATGCCGATCGCCACCGGGCTCGAGCGCGA 211 consensus_15310#3 GGCGCAGGCGAGGACGAGGGTGGAGGACGTGATGCCGATCGCCACCGGGCTCGAGCGCGA 211 consensus_15310#1 GAGCATGATGTCGTGTGGTTTTGGTTGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGC 366 consensus_15310#5 ------------------------------------------------------------ consensus_15310#4 GCACCTCCAAGTATTTTCCTCCGCCTTTGGAAGGTGTATAGGAAGAAAGGAGGAGATTCC 279 consensus_15310#0 GAGCATGATGTCGTGTGGTTTTGGTTGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGC 480 consensus_15310#2 GGAGATC--GCCGCCGAGCTCCAGGGGAAGAAGAGGT-TTGATATGGACGCGCCCGTCGG 268 consensus_15310#3 GGAGATC--GCCGCCGAGCTCCAGGGGAAGAAGAGGT-TTGATATGGACGCGCCCGTCGG 268 consensus_15310#1 ACTCAGTATTTCTCGCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGAT 426 consensus_15310#5 ------------------------------------------------------------ consensus_15310#4 --TGATTGGGCCATGACCGATG-GACCGGACCGATTCCACCCCCCAATCCAT-TAAGGGT 335 consensus_15310#0 ACTCAGTATTTCTCGCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGAT 540 consensus_15310#2 GCCCTTTGGTACCAAGGTGAGATGAGAGGCTGAGAGCTTTCCATTTCACATCAATTCCAT 328 consensus_15310#3 GCCCTTTGGTACCAAGGTGAGATGAGAGGCTGAGAGCTTTCCATTTCACATCAATTCCAT 328 consensus_15310#1 GACGACGATCACCACCATCATTAAG-GTTGCAGAAGTCACCTCTAGCAATAAAAACACTG 485 consensus_15310#5 ------------------------------------------------------------ consensus_15310#4 TTCCAGAAGTTCCACCCTCTTAGCC-AATGATGAAG--AACCCCGGGATTATGCCCATAA 392 consensus_15310#0 GACGACGATCACCACCATCATTAAG-GTTGCAGAAGTCACCTCTAGCAATAAAAACACTG 599 consensus_15310#2 GGATGTGTTGACCCGTGTATTTGAGAGCTATTGAATTGATTGGTTAGATGGAGTGTGTGA 388 consensus_15310#3 GGATGTTTTGACCCGTGTATTTGAGAGCTATTGAATTGATTGGTTAGATGGAGTGTGTGA 388 consensus_15310#1 GATATGGCCATATCCATGTCAACTGTCAATTCAGATGACTTGGAGCAGCA-GTGGA---- 540 consensus_15310#5 ------------------------------------------------------------ consensus_15310#4 TCCATGGTTCAACCTGT--------TCAATTCAGATGACTTGGACCACCACGTGGA---- 440 consensus_15310#0 GATATGGCCATATCCATGTCAACTCTCAATTCAGATGACTTGGAGCAGCA-GTGGA---- 654 consensus_15310#2 TTGCTGACTGAATTAGTGCTGATGTGTAGTGCTTAAGACTTGTGGCCATGGATGCAACGC 448 consensus_15310#3 TTGCTGACTGAATTAATGCTGATGTGTAGTGCTTAAGACTTGTGGCCATGGATGCAACGC 448 consensus_15310#1 --TTTTGGAAAAACAAAGTTTGTCTTTTTAGAGATTTGTTC-ATGC-AAATAAC-AGGAT 595 consensus_15310#5 ------------------------------------------------------------ consensus_15310#4 --TTTTGGAAAAACAA-GTTTGTCTTTTTAGAGATTTGTTCCATGCCAAATAACCAGGAT 497 consensus_15310#0 --TTTTGGAAAAACAAAGTTTGTCTTTTTAGAGATTTGTTC-ATGC-AAATAAC-AGGAT 709 consensus_15310#2 TCTCTTAATAGCTTGACATGTTCCCCTCTGATATTAGGTGATAAGCTTCTTTGGCTCAAC 508 consensus_15310#3 TCTCTTAATAGCTTGACATGTTCCCCTCTGATATTAGGTGATAAGCTTCTTTGGCTCAAC 508 consensus_15310#1 TCAGTAAACAATGA--TATGCAATTCTC--TTTTTCAGCACACC-TTAGTCGAATTCAAA 650 consensus_15310#5 ------------------------------------------------------------ consensus_15310#4 TCAGTAAACAATGGAGTAGCCAATTCTCG-TTTTCCAGCACACCCTTAGTCGAATGCGAA 556 consensus_15310#0 TCAGTAAACAATGA--TATGCAATTCTC--TTTTTCAGCACACC-TTAGTCGAATTCAAA 764 consensus_15310#2 GGAATCGGCGAAGAGATAGGTGTTAGTTTCTGATGTTGCATATGCAGCATCTGGGTCACG 568 consensus_15310#3 GGAATCGGCGAAGAGATAGGTGTTAGTTTCTGATGTTGCAGATGCAGCAGCTGGGTCACG 568 consensus_15310#1 --ATAGGTATGTTTGTTTGTTTGTCTTGATGGATGATTCCATGTTCAAT--GGCCACC-T 705 consensus_15310#5 ---------TGTTTGTTTGTTTGTCTTGATGGATGATTCCATGTTCAAT--GGCCACC-T 48 consensus_15310#4 GAATAGGTATGTTTGTTTGTTTGTCTTGATGGGATGATCCAGGTTCAAT--GGCCACCCT 614 consensus_15310#0 --ATAGGTATGTTTGTTTGTTTGTCTTGATGGATGATTCCATGTTCAAT--GGCCACC-T 819 consensus_15310#2 GCAGGGATTTTGTTCACTGAATATGAATATGTGAGATTGTACCATTGGGTCAGCTACC-- 626 consensus_15310#3 GCAGGGATTTTGTTCACTGAATATGAATATGTGAGATTGTAGCATTGGTTCAGCTACC-- 626 * ** ** * * *** * * * ** *** consensus_15310#1 GGACCATTTATTTTGGT--GTATGATCTGT-TATCTGAACATTTCACAAACCTTGGTCCT 762 consensus_15310#5 GGACCATTTATTTTGGT--GTATGATCTGT-TATCTGA-CATTTCACGAGCCTTGGTCCT 104 consensus_15310#4 GGACCATTTATTTGGGT--GTATGATCTGT-TATCGGACCATTTCACAAACCTGGGTCCT 671 consensus_15310#0 GGACCATTTATTTTGGT--GTATGATCTGT-TATCTGAACATTTCACAAACCTTGGTCCT 876 consensus_15310#2 GGTTCTTTTCCGTACATAGGAAAGATTTTTATGCACAAACATTACGCAAAAGTGCCACAC 686 consensus_15310#3 GGTTCTTTTCCCTACATAGGAAAGATTTTTATGCACAAACATTAGGCAAAAGTTCAACAC 686 ** * *** * * * * *** * * * * **** * * * * consensus_15310#1 GTTCA-ATTCAGTTTAAACA-AATGAAGT-CAGCATTCTGATGATCCTT----CTAAAAA 815 consensus_15310#5 GTTCA--TTCAGTTTAAC---AATGAAGTGCAGCATTCTGATGATCCGTTGCGTGAGGAG 159 consensus_15310#4 GTTCA-ATCCAGTTTAAACA-AATGAAGT-CACCATTCTGATGAAAAA-------AAAAA 721 consensus_15310#0 GTTCA-ATTCAGTTTAAACA-AATGAAGT-CAGCATTCTGATGAAAAAA-----AAAAAA 928 consensus_15310#2 ACATACGTTTAATATGGTCATTACTGCGTAGGTAATTCTGTTTATGTCTACACT------ 740 consensus_15310#3 ACATACATTTAATAAAGTCATTACAACATAGGTAATTCTGTTTATGT------------- 733 * * * * * * ****** * * consensus_15310#1 CA-GCTATTCCCTTTAGTGAGGTAATTTAGGTGCCTGCC 853 consensus_15310#5 CGCGTAGTTCCCTTT------------------------ 174 consensus_15310#4 --------------------------------------- consensus_15310#0 AA------------------------------------- 930 consensus_15310#2 --------------------------------------- consensus_15310#3 --------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||