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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15310#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 930 fasta sequence
[ACCCCAAATTGGCCCGAAAGCTGCCTCCTTTTTCCTCCTCCTAACCACCGCTCCGGCCTCTCCATCTCCCGCCGCTCGCCGTCGCCGCCGCCGCCCGCCATGTGGAAGCGCGCGACCTCCGTCCTCCTCCACCACCGCTCCGCCCTCACCCGCCGCTCCCCGGCGATCGGCGGCGGCGTCCTTCCCCGTGCTCTCTTCTTCTCCACGCTCGATGCGGCGCAGGCGAGGACGAGGGTGGAGGACGTGATGCCGATCGCCACCGGGCTCGAGCGCGAGGAGATCGCCGCCGAGCTCCAGGGGAAGAAGAGGTTTGATATGGACGCGCCCGTCGGGCCCTTTGGTACCAAGGAAGCTCCAGCTGTTATTCAGTCATACTACAACAAAAGGATTGTTGGTTGTCCCGGTGGTGAAGGAGAGGACGAGCATGATGTCGTGTGGTTTTGGTTGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGACGATCACCACCATCATTAAGGTTGCAGAAGTCACCTCTAGCAATAAAAACACTGGATATGGCCATATCCATGTCAACTCTCAATTCAGATGACTTGGAGCAGCAGTGGATTTTGGAAAAACAAAGTTTGTCTTTTTAGAGATTTGTTCATGCAAATAACAGGATTCAGTAAACAATGATATGCAATTCTCTTTTTCAGCACACCTTAGTCGAATTCAAAATAGGTATGTTTGTTTGTTTGTCTTGATGGATGATTCCATGTTCAATGGCCACCTGGACCATTTATTTTGGTGTATGATCTGTTATCTGAACATTTCACAAACCTTGGTCCTGTTCAATTCAGTTTAAACAAATGAAGTCAGCATTCTGATGAAAAAAAAAAAAAA]
[+] EMBL AU197817 [ACCCCAAATTGGCCCGAAAGCTGCCTCCTTTTTCCTCCTCCTAACCACCGCTCCGGCCTCTCCATCTCCCGCCGCTCGCCGTCGCCGCCGCCGCCCGCCATGTGGAAGCGCGCGACCTCCGTCCTCCTCCACCACCGCTCCGCCCTCACCCGCCGCTCCCCGGCGATCGGCGGCGGCGTCCTTCCCCGTGCTCTCTTCTTCTCCACGCTCGATGCGGCGCAGGCGAGGACGAGGGTGGAGGACGTGATGCCGATCGCCACCGGGCTCGAGCGCGAGGAGATCGCCGCCGAGCTCCAGGGGAAGAAGAGGTTTGATATGGACGCGCCCGTCGGGCCCTTTGGTACCAAGGAAGCTCCAGCTGTTATTCAGTCATACTACAACAAAAGGATTGNTGGTTGTCCCGGTGGTGAAGGAGAGGACGAG ]
[+] EMBL AU057455 [ACCCCAAATTGGCCCGAAAGCTGCCTCCTTTTTCCTCCTCCTAACCACCGCTCCGGCCTCTCCATCTCCCGCCGCTCGCCGTCGCCGCCGCCGCCCGCCATGTGGAAGCGCGCGACCTCCGTCCTCCTCCACCACCGCTCCGCCCTCACCCGCCGCTCCCCGGCGATCGGCGGCGGCGTCCTTCCCCGTGCTCTCTTCTTCTCCACGCTCGATGCGGCGCAGGCGAGGACGAGGGTGGAGGACGTGATGCCGATCGCCACCGGGCTCGAGCGCGAGGAGATCGCCGCCGAGCTCCAGGGGAAGAAGAGGTTTGATATGGACGCGCCCGTCGGGCCCTTTGGTACCAAGGAAGCTCCAGCTGTTATTCAGTCATACTACAACAAAAGGATTGTTGGTTGTCCCGGTGGTGAAGGAGAGGACGA ]
[+] EMBL AK071423 [ TCCTCCTAACCACCGCTCCGGCCTCTCCATCTCCCGCCGCTCGCCGTCGCCGCCGCCGCCCGCCATGTGGAAGCGCGCGACCTCCGTCCTCCTCCACCACCGCTCCGCCCTCACCCGCCGCTCCCCGGCGATCGGCGGCGGCGTCCTTCCCCGTGCTCTCTTCTTCTCCACGCTCGATGCGGCGCAGGCGAGGACGAGGGTGGAGGACGTGATGCCGATCGCCACCGGGCTCGAGCGCGAGGAGATCGCCGCCGAGCTCCAGGGGAAGAAGAGGTTTGATATGGACGCGCCCGTCGGGCCCTTTGGTACCAAGGAAGCTCCAGCTGTTATTCAGTCATACTACAACAAAAGGATTGTTGGTTGTCCCGGTGGTGAAGGAGAGGACGAGCATGATGTCGTGTGGTTTTGGTTGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGACGATCACCACCATCATTAAGGTTGCAGAAGTCACCTCTAGCAATAAAAACACTGGATATGGCCATATCCATGTCAACTCTCGATTCAGATGACTTGGAGCAGCAGTGGATTTTGGAAAAACAAAGTTTGTCTTTTTAGAGATTTGTTCATGCAAATAACAGGATTCAGTAAACAATGATATGCAATTCTCTTTTTCAGCACACCTTAGTCGAATTCAAAATAGGTATGTTTGTTTGTTTGTCTTGATGGATGATTCCATGTTCAATGGCCACCTGGACCATTTATTTTGGTGTATGATCTGTTATCTGAACATTTCACAAACCTTGGTCCTGTTCAATTCAGTTTAAACAAATGAAGT ]
[+] EMBL CA767047 [ gagacaAGGGGAAGAAGAGGTTTGATATGGACGCGCCCGTCGGGCCCTTTGGTACCAAGGAAGCTCCAGCTGTTATTCAGTCATACTACAACAAAAGGATTGTTGGTTGTCCCGGTGGTGAAGGAGAGGACGAGCATGATGTCGTGTGGTTTTGGTTGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGACGATCACCACCATCATTAAGGTTGCAGAAGTCACCTCTAGCAATAAAAACACTGGATATGGCCATATCCATGTCAACTCTCAATTCAGATGACTTGGAGCAGCAGTGGATTTTGGAAAAACAAAGTTTGTCTTTTTAGAGATTTGTTCATGCAAATAACAGGATTCAGTAAACAATGATATGCAATTCTCTTTTTCAGCACACCTTAGTCGAATTCAAAATAGGTATGTTTGTTTGTTTGTCTTGATGGATGATTCCATGTTCAATGGCCACCTGGACCATTTATTTTGGTGTATGATCTGTTATCTGAACATTTCACAAGCCTTGGTCCTGTTCAATTCAGTTTAAACAAATGAAGTCAGCATTCTGATGAAAAAAAAAAAAAA]
[+] EMBL CB096789 [ GTTTGATATGGACGCGCCCGTCGGGCCCTTTGGTACCAAGGAAGCTCCAGCTGTTATTCAGTCATACTACAACAAAAGGATTGTTGGTTGTCCCGGTGGTGAAGGAGAGGACGAGCATGATGTCGTGTGGTTTTGGTTGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGACGATCACCACCATCATTAAGGTTGCAGAAGTCACCTCTAGCAATAAAAACACTGGATATGGCCATATCCATGTCAACTCTCAATTCAGATGACTTGGAGCAGCAGTGGATTTTGGAAAAACAAAGTTTGTCTTTTTAGAGATTTGTTCATGCAAATAACAGGATTCAGTAAACAATGATATGCAATTCTCTTTTTCAGCACACCTTAGTCGAATTCAAAATAGGTATGTTTGTTTGTTTGTCTTGATGGATGATTCCATGTTCAATGGCCACCTGGACCATTTATTTTGGTGTATGATCTGTTATCTGAACATTTCACAAACCTTGGTCCTGTTCAATTCAGTTTAAACAAATGAAGTCAGCATTCTGA ]
[+] EMBL AU197818 [ TTTGATATGGACGCGCCCGTCGGGCCCTTTGGTACCAAGGAAGCTCCAGCTGTTATTCAGTCATACTACAACAAAAGGATTGTTGGTTGTCCCGGTGGTGAAGGAGAGGACGAGCATGATGTCGTGTGGTTTTGGTTGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGACGATCACCNCCATCATTAAGGTTGCAGAAGTCACCTCTAGCAATAAAAACNCTGGATATGGCCATATCCATGTCAACTNTCAATTCAGATGACTTGGAGCAGCAGTGGATTTTGGAAAAACAAAGTTTGTCTTTTTAGAGATTTGTTCATGCAAATAACAGGATTCAGTAAACAATGATATGCAATTNTNTTTTTCAaaaaa ]
[+] EMBL AU057456 [ TTGGTACCAAGGAAGCTCCAGCTGTTATTCAGTCATACTACAACAAAAGGATTGTTGGTTGTCCCGGTGGTGAAGGAGAGGACGAGCATGATGTCGTGTGGTTTTGGTTGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGACGATCACCACCATCATTAAGGTTGCAGAAGTCACCTCTAGCAATAAAAACACTGGATATGGCCATATCCATGTCAACTCTCAATTCAGATGACTTGGAGCAGCAGTGGATTTTGGAAAAACAAAGTTTGTCTTTTTAGAGATTTGTTCATGCAAATAACAGGATTCAGTAAACAATGATATGCAATTCTCTTTTTCAaaaaa ]
[-] EMBL CF306890 [ GATGTCGTGTGGTTTTGG TGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGACGATCACCACCATCATTAAGGTTGCAGAAGTCACCTCTAGCAATAAAAACACTGGATATGGCCATATCCATGTCAACTCTCAATTCAGATGACTTGGAGCAGCAGTGGATTTTGGAAAAACAAAGTTTGTCTTTTTAGAGATTTGTTCATGCAAATAACAGGATTCAGTAAACAATGATATGCAATTCTCTTTTTCAGCACACCTTAGTCGAATTCAAAATAGGTATGTTTGTTTGTTTGTCTTGATGGATGATTCCATGTTCAATGGCCACCTGGACCATTTATTTTGGTGTATGATCTGTTATCTGAACATTTCACAAACCTTGGTCCTGTTCAATTCAGTTTAAACAAATGAAGTCAGCATTCTGATGAAAAAA ]
consensusID : consensus_15310#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 853 fasta sequence
[TTTCTCATGACATTTCCCCTCAGACTTGCATTAGGTGTGATCTGATAAGGTTATCAGCACATTAATGGGCATCATTTTCATTCTGTTTTGGCCTGTTGATGAATGGTACTGCTCTTTAGCGTGTTGCATCTAACCTTGATTTGGTCCCTTTGTACCTTTTGTGTCACTGTTCAGTTTAGTTCATTCCACTCCTGCGTGATCGAACTGGACTAATATTTTTTCCATGTTGTATAGGAAGCTCCAGCTGTTATTCAGTCATACTACAACAAAAGGATTGTTGGTTGTCCCGGTGGTGAAGGAGAGGACGAGCATGATGTCGTGTGGTTTTGGTTGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGACGATCACCACCATCATTAAGGTTGCAGAAGTCACCTCTAGCAATAAAAACACTGGATATGGCCATATCCATGTCAACTGTCAATTCAGATGACTTGGAGCAGCAGTGGATTTTGGAAAAACAAAGTTTGTCTTTTTAGAGATTTGTTCATGCAAATAACAGGATTCAGTAAACAATGATATGCAATTCTCTTTTTCAGCACACCTTAGTCGAATTCAAAATAGGTATGTTTGTTTGTTTGTC-TTGATGGATGATTC-CATGTTCAATGGCCACCTGGACCATTTATTTTGGTGTATGATCTGTTATCTGAACATTTCACAAACCTTGGTCCTGTTCAATTCAGTTTAAACAAATGAAGTCAGCATTCTGATGATCCTTCTAAAAACAGCTATTCCCTTTAGTGAGGTAATTTAGGTGCCTGCC]
[-] EMBL CB631578 [TTTCTCATGACATTTCCCCTCAGACTTGCATTAGGTGTGATCTGATAAGGTTATCAGCACATTAATGGGCATCATTTTCATTCTGTTTTGGCCTGTTGATGAATGGTACTGCTCTTTAGCGTGTTGCATCTAACCTTGATTTGGTCCCTTTGTACCTTTTGTGTCACTGTTCAGTTTAGTTCATTCCACTCCTGCGTGATCGAACTGGACTAATATTTTTTCCATGTTGTATAGGAAGCTCCAGCTGTTATTCAGTCATACTACAACAAAAGGATTGTTGGTTGTCCCGGTGGTGAAGGAGAGGACGAGCATGATGTCGTGTGGTTTTGGTTGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGACGATCACCACCATCATTAAGGTTGCAGAAGTCACCTCTAGCAATAAAAACACTGGATATGGCCATATCCATGTCAACTGTCAATTCAGATGACTTGGAGCAGCAGTGGATTTTGGAAAAACAAAGTTTGTCTTTTTAGAGATTTGTTCATGCAAATAACAGGATTCAGTAAACAATGATATGCAATTCTCTTTTTCAGCACACCTTAGTCGAATTCAAAATAGGTATGTTTGTTTGTTTGTC TTGATGGATGATTC CATGTTCAATGGCCACCTGGACCATTTATTTTGGTGTATGATCTGTTATCTGAACATTTCACAAACCTTGGTCCTGTTCAATTCAGTTTAAACAAATGAAGTCAGCATTCT ]
[-] EMBL CB631539 [ CTCATGACATTTCCCCTCAGACTTGCATTAGGTGTGATCTGATAAGGTTATCAGCACATTAATGGGCATCATTTTCATTCTGTTTTGGCCTGTTGATGAATGGTACTGCTCTTTAGCGTGTTGCATCTAACCTTGATTTGGTCCCTTTGTACCTTTTGTGTCACTGTTCAGTTTAGTTCATTCCACTCCTGCGTGATCGAACTGGACTAATATTTTTTCCATGTTGTATAGGAAGCTCCAGCTGTTATTCAGTCATACTACAACAAAAGGATTGTTGGTTGTCCCGGTGGTGAAGGAGAGGACGAGCATGATGTCGTGTGGTTTTGGTTGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGCACTCAGTATTTCTCGCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGATGACGACGATCACCACCATCATTAAGGTTGCAGAAGTCACCTCTAGCAATAAAAACACTGGATATGGCCATATCCATGTCAACTGTCAATTCAGATGACTTGGAGCAGCAGTGGATTTTGGAAAAACAAAGTTTGTCTTTTTAGAGATTTGTTCATGCAAATAACAGGATTCAGTAAACAATGATATGCAATTCTCTTTTTCAGCACACCTTAGTCGAATTCAAAATAGGTATGTTTGTTTGTTTGTC TTGATGGATGATTC CATGTTCAATGGCCACCTGGACCATTTATTTTGGTGTATGATCTGTTATCTGAACATTTCACAAACCTTGGTCCTGTTCAATTCAGTTTAAACAAATGAAGTCAGCATTC ]
[+] EMBL CB096248 [ GAAAAACAAAGTTTGTCTTTTTAGAGATTTGTTCATGCAAATAACAGGATTCAGTAAACAATGATATGCAATTCTCTTTTTCAGCACACCTTAGTCGAATTCAAAATAGGTATGTTTGTTTGTTTGTC TTGATGGATGATTC CATGTTCAATGGCCACCTGGACCATTTATTTTGGTGTATGATCTGTTATCTGAACATTTCACAAGCCTTGGTCCTGTTCAATTCAGTTTAAACAAATGAAGTCAGCATTCTG ]
[+] EMBL BE230360 [ TTGTTCATGCCAATAACAGGATTCAGTAAACAATGATATGCAATTCTCTTTTTCAGCACACCTTAATCGAATTCAAAATAGGTATGNTTGGTTGGTTGGC CTGATGGATGATTC CATGTTCAATGGCCACCTGGACCATTTATTTTGGTGGATGATCTGGTATCTGAACATTTCACAAACCTTGGTCCTGTTCAATTCAGTTTAAACAAATGAAGTCAGCATT ]
[-] EMBL BU673824 [ TGTTTGTTTGTTTGTC TTGATGGATGATTC CATGTTCAATGGCCACCTGGACCATTTATTTTGGTGTATGATCTGTTATCTGAACATTTCACAAACCTTGGTCCTGTTCAATTCAGTTTAAACAAATG NGTCAGCATTCTGATGATCCTTCTAAAAACAGCTATTCCCTTTAGTGAGGTAATTTAGGTGCCTGCC]
[-] EMBL BI306064 [ TGTTTGTTTGTTTGTC TTGATGGATGATTC CATGTTCAATGGCCACCTGGACCATTTATTTTGGTGTATGATCTGTTATCTGAACATTTCACAAACCTTGGTCCTGTTCAATTCAGTTTAAACAAATGAAGTCAGCATTCTGATGATCCT ]
[-] EMBL BI305540 [ TGTTTGTTTGTTTGTC TTGATGGATGATTC CATGTTCAATGGCCACCTGGACCATTTATTTTGGTGTATGATCTGTTATCTGAACATTTCACAAACCTTGGTCCTGTTCAATTCAGTTTAAACAAATGAAGTCAGCATTCTGATGATCCT ]
[-] EMBL CB965751 [ TGTTTGTTTGTTTGTC TTGATGGATGATTC CATGTTCAATGGCCACCTGGACCATTTATTTTGGTGTATGATCTGTTATCTGAACATTTCACAAACCTTGGTCCTGTTC ATTCAGTTTAAAC AATGAAGTCAGCATTCTGAT ]
[-] EMBL BU672844 [ TGTTTGTCATTGATGGATGATTCACATGTTCAATGGCCACCTGGACCATTTATTTTGGTGTATGATCTGTTATCTGAACATTTCACAAACCTTGGTCCTGTTCAATTCAGTTTAAACAAATGAAGTCAGCATTCTGATGATCCTTCTAAAACAAGCTA TCCC TTAGTGAGGGGGCTTAGCTGCact ]
consensusID : consensus_15310#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 740 fasta sequence
[GCCGCTCGCCGTCGCCGCCGCCGCCGCCGCCCGCCATGTGGAAGCGCGCGACCTCCGTCCTCCTCCACCACCGCTCCGCCCTCACCCGCCGCTCCCCGGCGATCGGCGGCGGCGTCCTTCCCCGTGCTCTCTTCTTCTCGACGCTCGATGCGGCGCATGCGAGGACGAGGGTGGAGGACGTGATGCCGATCGCCACCGGGCTCGAGCGCGAGGAGATCGCCGCCGAGCTCCAGGGGAAGAAGAGGTTTGATATGGACGCGCCCGTCGGGCCCTTTGGTACCAAGGTGAGATGAGAGGCTGAGAGCTTTCCATTTCACATCAATTCCATGGATGTGTTGACCCGTGTATTTGAGAGCTATTGAATTGATTGGTTAGATGGAGTGTGTGATTGCTGACTGAATTAGTGCTGATGTGTAGTGCTTAAGACTTGTGGCCATGGATGCAACGCTCTCTTAATAGCTTGACATGTTCCCCTCTGATATTAGGTGATAAGCTTCTTTGGCTCAACGGAATCGGCGAAGAGATAGGTGTTAGTTTCTGATGTTGCATATGCAGCATCTGGGTCACGGCAGGGATTTTGTTCACTGAATATGAATATGTGAGATTGTACCATTGGGTCAGCTACCGGTTCTTTTCCGTACATAGGAAAGATTTTTATGCACAAACATTACGCAAAAGTGCCACACACATACGTTTAATATGGTCATTACTGCGTAGGTAATTCTGTTTATGTCTACACT]
[+] EMBL CB631577 [GCCGCTCGCCGTCGCCGCCGCCGCCGCCGCCCGCCATGTGGAAGCGCGCGACCTCCGTCCTCCTCCACCACCGCTCCGCCCTCACCCGCCGCTCCCCGGCGATCGGCGGCGGCGTCCTTCCCCGTGCTCTCTTCTTCTCGACGCTCGATGCGGCGCATGCGAGGACGAGGGTGGAGGACGTGATGCCGATCGCCACCGGGCTCGAGCGCGAGGAGATCGCCGCCGAGCTCCAGGGGAAGAAGAGGTTTGATATGGACGCGCCCGTCGGGCCCTTTGGTACCAAGGTGAGATGAGAGGCTGAGAGCTTTCCATTTCACATCAATTCCATGGATGTGTTGACCCGTGTATTTGAGAGCTATTGAATTGATTGGTTAGATGGAGTGTGTGATTGCTGACTGAATTAGTGCTGATGTGTAGTGCTTAAGACTTGTGGCCATGGATGCAACGCTCTCTTAATAGCTTGACATGTTCCCCTCTGATATTAGGTGATAAGCTTCTTTGGCTCAACGGAATCGGCGAAGAGATAGGTGTTAGTTTCTGATGTTGCATATGCAGCATCTGGGTCACGGCAGGGATTTTGTTCACTGAATATGAATATGTGAGATTGTACCATTGGGTCAGCTACCGGTTCTTTTCCGTACATAGGAAAGATTTTTATGCACAAACATTACGCAAAAGTGCCACACACATACGTTTAATATGGTCATTACTGCGTAGGTAATTCTGTTTATGTCTACACT]
consensusID : consensus_15310#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 733 fasta sequence
[GCCCCCTTAAGGCGCCGCCGCCGCCGCCGCCCGCCATGTGGAAGCGCGCGACCTCCGTCCTCCTCCACCACCGCTCCCCCCTCACCCGCCGCTCCCCGGCGATCGGCGGCGGCGTCCTTCCCCGTGCTCTCTTCTTCTCCACGCTCGATGCGGCGCAGGCGAGGACGAGGGTGGAGGACGTGATGCCGATCGCCACCGGGCTCGAGCGCGAGGAGATCGCCGCCGAGCTCCAGGGGAAGAAGAGGTTTGATATGGACGCGCCCGTCGGGCCCTTTGGTACCAAGGTGAGATGAGAGGCTGAGAGCTTTCCATTTCACATCAATTCCATGGATGTTTTGACCCGTGTATTTGAGAGCTATTGAATTGATTGGTTAGATGGAGTGTGTGATTGCTGACTGAATTAATGCTGATGTGTAGTGCTTAAGACTTGTGGCCATGGATGCAACGCTCTCTTAATAGCTTGACATGTTCCCCTCTGATATTAGGTGATAAGCTTCTTTGGCTCAACGGAATCGGCGAAGAGATAGGTGTTAGTTTCTGATGTTGCAGATGCAGCAGCTGGGTCACGGCAGGGATTTTGTTCACTGAATATGAATATGTGAGATTGTAGCATTGGTTCAGCTACCGGTTCTTTTCCCTACATAGGAAAGATTTTTATGCACAAACATTAGGCAAAAGTTCAACACACATACATTTAATAAAGTCATTACAACATAGGTAATTCTGTTTATGT]
[+] EMBL CB631538 [GCCCCCTTAAGGCGCCGCCGCCGCCGCCGCCCGCCATGTGGAAGCGCGCGACCTCCGTCCTCCTCCACCACCGCTCCCCCCTCACCCGCCGCTCCCCGGCGATCGGCGGCGGCGTCCTTCCCCGTGCTCTCTTCTTCTCCACGCTCGATGCGGCGCAGGCGAGGACGAGGGTGGAGGACGTGATGCCGATCGCCACCGGGCTCGAGCGCGAGGAGATCGCCGCCGAGCTCCAGGGGAAGAAGAGGTTTGATATGGACGCGCCCGTCGGGCCCTTTGGTACCAAGGTGAGATGAGAGGCTGAGAGCTTTCCATTTCACATCAATTCCATGGATGTTTTGACCCGTGTATTTGAGAGCTATTGAATTGATTGGTTAGATGGAGTGTGTGATTGCTGACTGAATTAATGCTGATGTGTAGTGCTTAAGACTTGTGGCCATGGATGCAACGCTCTCTTAATAGCTTGACATGTTCCCCTCTGATATTAGGTGATAAGCTTCTTTGGCTCAACGGAATCGGCGAAGAGATAGGTGTTAGTTTCTGATGTTGCAGATGCAGCAGCTGGGTCACGGCAGGGATTTTGTTCACTGAATATGAATATGTGAGATTGTAGCATTGGTTCAGCTACCGGTTCTTTTCCCTACATAGGAAAGATTTTTATGCACAAACATTAGGCAAAAGTTCAACACACATACATTTAATAAAGTCATTACAACATAGGTAATTCTGTTTATGT]
consensusID : consensus_15310#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 721 fasta sequence
[CGAGGGAGTTCCCCCCGAGCTCAGGGGAAGAAGAGGTTTGATATGGACGCGCCCTCGGGCCCTTTGGTACCAAGGAAGCTCCAGCCTGTTGATTCAGTCATACTACAACAAAGGATTGTTTGTTGTCCCGGTGGGTGTAAGGGAGAGGACGAGCATGATGTCGTGTGGTTTTGTTGGAGAAAAAGGCCATAACCCAACCATTGGAATGCCCCTGTTCTTGCACCTCCAAGTATTTTCCTCCGCCTTTGGAAGGTGTATAGGAAGAAAGGAGGAGATTCCTGATTGGGCCATGACCGATGGACCGGACCGATTCCACCCCCCAATCCATTAAGGGTTTCCAGAAGTTCCACCCTCTTAGCCAATGATGAAGAACCCCGGGATTATGCCCATAATCCATGGTTCAACCTGTTCAATTCAGATGACTTGGACCACCACGTGGATTTTGGAAAAACAAGTTTGTCTTTTTAGAGATTTGTTCCATGCCAAATAACCAGGATTCAGTAAACAATGGAGTAGCCAATTCTCGTTTTCCAGCACACCCTTAGTCGAATGCGAAGAATAGGTATGTTTGTTTGTTTGTCTTGATGGGATGATCCAGGTTCAATGGCCACCCTGGACCATTTATTTGGGTGTATGATCTGTTATCGGACCATTTCACAAACCTGGGTCCTGTTCAATCCAGTTTAAACAAATGAAGTCACCATTCTGATGAAAAAAAAAA]
[+] EMBL BI800170 [CGAGGGAGTTCCCCCCGAGCTCAGGGGAAGAAGAGGTTTGATATGGACGCGCCCTCGGGCCCTTTGGTACCAAGGAAGCTCCAGCCTGTTGATTCAGTCATACTACAACAAAGGATTGTTTGTTGTCCCGGTGGGTGTAAGGGAGAGGACGAGCATGATGTCGTGTGGTTTTGTTGGAGAAAAAGGCCATAACCCAACCATTGGAATGCCCCTGTTCTTGCACCTCCAAGTATTTTCCTCCGCCTTTGGAAGGTGTATAGGAAGAAAGGAGGAGATTCCTGATTGGGCCATGACCGATGGACCGGACCGATTCCACCCCCCAATCCATTAAGGGTTTCCAGAAGTTCCACCCTCTTAGCCAATGATGAAGAACCCCGGGATTATGCCCATAATCCATGGTTCAACCTGTTCAATTCAGATGACTTGGACCACCACGTGGATTTTGGAAAAACAAGTTTGTCTTTTTAGAGATTTGTTCCATGCCAAATAACCAGGATTCAGTAAACAATGGAGTAGCCAATTCTCGTTTTCCAGCACACCCTTAGTCGAATGCGAAGAATAGGTATGTTTGTTTGTTTGTCTTGATGGGATGATCCAGGTTCAATGGCCACCCTGGACCATTTATTTGGGTGTATGATCTGTTATCGGACCATTTCACAAACCTGGGTCCTGTTCAATCCAGTTTAAACAAATGAAGTCACCATTCTGATGAAAAAAAAAA]
consensusID : consensus_15310#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 174 fasta sequence
[TGTTTGTTTGTTTGTCTTGATGGATGATTCCATGTTCAATGGCCACCTGGACCATTTATTTTGGTGTATGATCTGTTATCTGACATTTCACGAGCCTTGGTCCTGTTCATTCAGTTTAACAATGAAGTGCAGCATTCTGATGATCCGTTGCGTGAGGAGCGCGTAGTTCCCTTT]
[-] EMBL CB966845 [TGTTTGTTTGTTTGTCTTGATGGATGATTCCATGTTCAATGGCCACCTGGACCATTTATTTTGGTGTATGATCTGTTATCTGACATTTCACGAGCCTTGGTCCTGTTCATTCAGTTTAACAATGAAGTGCAGCATTCTGATGATCCGTTGCGTGAGGAGCGCGTAGTTCCCTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15310#1 ------------------------------------------------------------
consensus_15310#5 ------------------------------------------------------------
consensus_15310#4 ------------------------------------------------------------
consensus_15310#0 ACCCCAAATTGGCCCGAAAGCTGCCTCCTTTTTCCTCCTCCTAACCACCGCTCCGGCCTC 60
consensus_15310#2 ------------------------------------------------------------
consensus_15310#3 ------------------------------------------------------------
consensus_15310#1 ------------------------------------------------TTTCTCATGACA 12
consensus_15310#5 ------------------------------------------------------------
consensus_15310#4 ------------------------------------------------------------
consensus_15310#0 TCCATCTCCCGCCGCTCGCCGTCGCCGCCGCCGCCCGCCATGTGGAAGCGCGCGACCTCC 120
consensus_15310#2 ------------------------------------------------------------
consensus_15310#3 ------------------------------------------------------------
consensus_15310#1 TTTCCCCTCAGACTTGCATTAGGTGTGATCTGATAAGGTTATCAGCACATTAATGGGCAT 72
consensus_15310#5 ------------------------------------------------------------
consensus_15310#4 ------------------------------------------------------------
consensus_15310#0 GTCCTCCTCCACCACCGCTCCGCCCTCACCCGCCGCTCCCCGGCGATCGGCGGCGGCGTC 180
consensus_15310#2 ------------------------------------------------------------
consensus_15310#3 ------------------------------------------------------------
consensus_15310#1 CATTTTCATTCTGTTTTGGCCTGTTGATGAATGGTACTGCTCTTTAGCGTGTTGCATCTA 132
consensus_15310#5 ------------------------------------------------------------
consensus_15310#4 ---------------CGAGGGAGTTCCCCCCGAGCTCAGGGGAAGAAGAGGTTTGATATG 45
consensus_15310#0 CTTCCCCGTGCTCTCTTCTTCTCCACGCTCGATGCGGCGCAGGCGAGGACGAGGGTGGAG 240
consensus_15310#2 ----------------------GCCGCTCGCCGTCGCCGCCGCCGCCGCCGCCCGCCATG 38
consensus_15310#3 ----------------------GCCCCCTTAAGGCGCCGCCGCCGCCGCCGCCCGCCATG 38
consensus_15310#1 ACCTTGATTT-GGTCCCTTTGTACCTTTTGTGTCACTGTTCAGTTTAGTTCATTCCACTC 191
consensus_15310#5 ------------------------------------------------------------
consensus_15310#4 GACGCGCCCTCGGGCCCTTTGGTACCAAGGAAGCTCCAGCCTGTTGATTCAGTCATACTA 105
consensus_15310#0 GACGTGATGCCGATCGCCACCGGGCTCGAGCGCGAGGAGATCGCCGCCGAGCTCCAGGGG 300
consensus_15310#2 TGGAAGCGCGCGACCTCCGTCCTCCTCCACCACCGCT--CCGCCCTCACCCGCCGCTCCC 96
consensus_15310#3 TGGAAGCGCGCGACCTCCGTCCTCCTCCACCACCGCT--CCCCCCTCACCCGCCGCTCCC 96
consensus_15310#1 CTGCGTGATCGAACT--GGACTAATATTTTTT---CCATGTTGTATAGGAAGCTCCAGCT 246
consensus_15310#5 ------------------------------------------------------------
consensus_15310#4 CAACAAAGGATTGTT--TG-TTGTCCCGGTGG---GTGTAAGGGAGAGGACGAGCATGAT 159
consensus_15310#0 AAGAAGAGGTTTGATATGGACGCGCCCGTCGGGCCCTTTGGTACCAAGGAAGCTCCAGCT 360
consensus_15310#2 CGGCGATCGGCGGCG-----GCGTCCTTCCCCGTGCTCTCTTCTTCTCGACGCTCGATGC 151
consensus_15310#3 CGGCGATCGGCGGCG-----GCGTCCTTCCCCGTGCTCTCTTCTTCTCCACGCTCGATGC 151
consensus_15310#1 GTTATTCAGTCATACTACAACAAAAGGATTGTTGGTTGTCCCGGTGGTGAAGGAGAGGAC 306
consensus_15310#5 ------------------------------------------------------------
consensus_15310#4 GTCGTGTGGTTTTGTTGGAGAAAAAGGCCATAACCCAACCATTGGAATGCCCCTGTTCTT 219
consensus_15310#0 GTTATTCAGTCATACTACAACAAAAGGATTGTTGGTTGTCCCGGTGGTGAAGGAGAGGAC 420
consensus_15310#2 GGCGCATGCGAGGACGAGGGTGGAGGACGTGATGCCGATCGCCACCGGGCTCGAGCGCGA 211
consensus_15310#3 GGCGCAGGCGAGGACGAGGGTGGAGGACGTGATGCCGATCGCCACCGGGCTCGAGCGCGA 211
consensus_15310#1 GAGCATGATGTCGTGTGGTTTTGGTTGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGC 366
consensus_15310#5 ------------------------------------------------------------
consensus_15310#4 GCACCTCCAAGTATTTTCCTCCGCCTTTGGAAGGTGTATAGGAAGAAAGGAGGAGATTCC 279
consensus_15310#0 GAGCATGATGTCGTGTGGTTTTGGTTGGAGAAAGGCAAGCCACATGAATGCCCTGTCTGC 480
consensus_15310#2 GGAGATC--GCCGCCGAGCTCCAGGGGAAGAAGAGGT-TTGATATGGACGCGCCCGTCGG 268
consensus_15310#3 GGAGATC--GCCGCCGAGCTCCAGGGGAAGAAGAGGT-TTGATATGGACGCGCCCGTCGG 268
consensus_15310#1 ACTCAGTATTTCTCGCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGAT 426
consensus_15310#5 ------------------------------------------------------------
consensus_15310#4 --TGATTGGGCCATGACCGATG-GACCGGACCGATTCCACCCCCCAATCCAT-TAAGGGT 335
consensus_15310#0 ACTCAGTATTTCTCGCTTGAGGTGATAGGAGAAGGAGGAGATCCTGATGGGCATGACGAT 540
consensus_15310#2 GCCCTTTGGTACCAAGGTGAGATGAGAGGCTGAGAGCTTTCCATTTCACATCAATTCCAT 328
consensus_15310#3 GCCCTTTGGTACCAAGGTGAGATGAGAGGCTGAGAGCTTTCCATTTCACATCAATTCCAT 328
consensus_15310#1 GACGACGATCACCACCATCATTAAG-GTTGCAGAAGTCACCTCTAGCAATAAAAACACTG 485
consensus_15310#5 ------------------------------------------------------------
consensus_15310#4 TTCCAGAAGTTCCACCCTCTTAGCC-AATGATGAAG--AACCCCGGGATTATGCCCATAA 392
consensus_15310#0 GACGACGATCACCACCATCATTAAG-GTTGCAGAAGTCACCTCTAGCAATAAAAACACTG 599
consensus_15310#2 GGATGTGTTGACCCGTGTATTTGAGAGCTATTGAATTGATTGGTTAGATGGAGTGTGTGA 388
consensus_15310#3 GGATGTTTTGACCCGTGTATTTGAGAGCTATTGAATTGATTGGTTAGATGGAGTGTGTGA 388
consensus_15310#1 GATATGGCCATATCCATGTCAACTGTCAATTCAGATGACTTGGAGCAGCA-GTGGA---- 540
consensus_15310#5 ------------------------------------------------------------
consensus_15310#4 TCCATGGTTCAACCTGT--------TCAATTCAGATGACTTGGACCACCACGTGGA---- 440
consensus_15310#0 GATATGGCCATATCCATGTCAACTCTCAATTCAGATGACTTGGAGCAGCA-GTGGA---- 654
consensus_15310#2 TTGCTGACTGAATTAGTGCTGATGTGTAGTGCTTAAGACTTGTGGCCATGGATGCAACGC 448
consensus_15310#3 TTGCTGACTGAATTAATGCTGATGTGTAGTGCTTAAGACTTGTGGCCATGGATGCAACGC 448
consensus_15310#1 --TTTTGGAAAAACAAAGTTTGTCTTTTTAGAGATTTGTTC-ATGC-AAATAAC-AGGAT 595
consensus_15310#5 ------------------------------------------------------------
consensus_15310#4 --TTTTGGAAAAACAA-GTTTGTCTTTTTAGAGATTTGTTCCATGCCAAATAACCAGGAT 497
consensus_15310#0 --TTTTGGAAAAACAAAGTTTGTCTTTTTAGAGATTTGTTC-ATGC-AAATAAC-AGGAT 709
consensus_15310#2 TCTCTTAATAGCTTGACATGTTCCCCTCTGATATTAGGTGATAAGCTTCTTTGGCTCAAC 508
consensus_15310#3 TCTCTTAATAGCTTGACATGTTCCCCTCTGATATTAGGTGATAAGCTTCTTTGGCTCAAC 508
consensus_15310#1 TCAGTAAACAATGA--TATGCAATTCTC--TTTTTCAGCACACC-TTAGTCGAATTCAAA 650
consensus_15310#5 ------------------------------------------------------------
consensus_15310#4 TCAGTAAACAATGGAGTAGCCAATTCTCG-TTTTCCAGCACACCCTTAGTCGAATGCGAA 556
consensus_15310#0 TCAGTAAACAATGA--TATGCAATTCTC--TTTTTCAGCACACC-TTAGTCGAATTCAAA 764
consensus_15310#2 GGAATCGGCGAAGAGATAGGTGTTAGTTTCTGATGTTGCATATGCAGCATCTGGGTCACG 568
consensus_15310#3 GGAATCGGCGAAGAGATAGGTGTTAGTTTCTGATGTTGCAGATGCAGCAGCTGGGTCACG 568
consensus_15310#1 --ATAGGTATGTTTGTTTGTTTGTCTTGATGGATGATTCCATGTTCAAT--GGCCACC-T 705
consensus_15310#5 ---------TGTTTGTTTGTTTGTCTTGATGGATGATTCCATGTTCAAT--GGCCACC-T 48
consensus_15310#4 GAATAGGTATGTTTGTTTGTTTGTCTTGATGGGATGATCCAGGTTCAAT--GGCCACCCT 614
consensus_15310#0 --ATAGGTATGTTTGTTTGTTTGTCTTGATGGATGATTCCATGTTCAAT--GGCCACC-T 819
consensus_15310#2 GCAGGGATTTTGTTCACTGAATATGAATATGTGAGATTGTACCATTGGGTCAGCTACC-- 626
consensus_15310#3 GCAGGGATTTTGTTCACTGAATATGAATATGTGAGATTGTAGCATTGGTTCAGCTACC-- 626
* ** ** * * *** * * * ** ***
consensus_15310#1 GGACCATTTATTTTGGT--GTATGATCTGT-TATCTGAACATTTCACAAACCTTGGTCCT 762
consensus_15310#5 GGACCATTTATTTTGGT--GTATGATCTGT-TATCTGA-CATTTCACGAGCCTTGGTCCT 104
consensus_15310#4 GGACCATTTATTTGGGT--GTATGATCTGT-TATCGGACCATTTCACAAACCTGGGTCCT 671
consensus_15310#0 GGACCATTTATTTTGGT--GTATGATCTGT-TATCTGAACATTTCACAAACCTTGGTCCT 876
consensus_15310#2 GGTTCTTTTCCGTACATAGGAAAGATTTTTATGCACAAACATTACGCAAAAGTGCCACAC 686
consensus_15310#3 GGTTCTTTTCCCTACATAGGAAAGATTTTTATGCACAAACATTAGGCAAAAGTTCAACAC 686
** * *** * * * * *** * * * * **** * * * *
consensus_15310#1 GTTCA-ATTCAGTTTAAACA-AATGAAGT-CAGCATTCTGATGATCCTT----CTAAAAA 815
consensus_15310#5 GTTCA--TTCAGTTTAAC---AATGAAGTGCAGCATTCTGATGATCCGTTGCGTGAGGAG 159
consensus_15310#4 GTTCA-ATCCAGTTTAAACA-AATGAAGT-CACCATTCTGATGAAAAA-------AAAAA 721
consensus_15310#0 GTTCA-ATTCAGTTTAAACA-AATGAAGT-CAGCATTCTGATGAAAAAA-----AAAAAA 928
consensus_15310#2 ACATACGTTTAATATGGTCATTACTGCGTAGGTAATTCTGTTTATGTCTACACT------ 740
consensus_15310#3 ACATACATTTAATAAAGTCATTACAACATAGGTAATTCTGTTTATGT------------- 733
* * * * * * ****** * *
consensus_15310#1 CA-GCTATTCCCTTTAGTGAGGTAATTTAGGTGCCTGCC 853
consensus_15310#5 CGCGTAGTTCCCTTT------------------------ 174
consensus_15310#4 ---------------------------------------
consensus_15310#0 AA------------------------------------- 930
consensus_15310#2 ---------------------------------------
consensus_15310#3 ---------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||