|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15311#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1019 fasta sequence
[GTCGTCGTCGTCTCCTCGATCGGGTTACCACGGCTGCGGGCTACGGCGACTAGCTTCCTTCTCTCGCCGAAGCGAGACCTCGCCTCCCCCGAGGAACCTGTGTGCAATAATTTGTTGTTACCTCTGGCATCCATAAGATGGAGGTCCTGAGTTGGAGAACGGTGTGCCTCTTGGTTCTCTGCACCGTGGCGTTGCTGCGCCCGGCTGCGGCTATCCGCTTTGTGATTGACAGGGAAGAGTGTTTCTCGCATAACGTGGAGTATGAGGGGGATACTGTTCATGTATCGTTCGTGGTGATCAAGGCTGACACCCCATGGCATTATAGCGAGGACGGAGTGGATCTTGTGGTTAAGGATCCTAATGGTGCTCAAGTCCGTGATTCTCGTGACAAGACTAGTGATAAGTTTGAGTTCATAGTTCAGAAGAGAGGCGTACATCGC-TTCTG-CTT-CACCAATAAATCCCC--ATACCATGAAACTGTAGATTTT-GATGTGCATGTTGGCCATTTTTCGTAC-TTTGATCAGCATGCGAAAGATGAACATTTTGCTCCTTTGTTTGAACAAATAGCAAAATTAGATGAAGCGCTTTACAACATTCAGTTCGAGCAGCACTGGCTAGAGGCCCA-AACTGACCGACAAGCTATATTGAACGAA-AACATGAGCA-GGAGGGCTGTCCA-CAAGGCTCTATTGGAGTCAGCAGCGCTGATTGCAG-CTAGCGTCATTCAAGTCTATCTATTGCGCCGCCTC-TTTGAGCGCAAGTTGGGGACATCCAGGGTCTAAA-TACT-CCAAAAGTAGCAGCTCCTCCTAA-TT-TACACTCTCGTCATCCCAACTA-AAGCTGTAAT-TCCGTACTGTATTGGTTGC-TAGATCTGCTGTTTACATG-CTGTGGGTTGCTGTCACATAGA-CCTTTAATTATTATGATTCCATTAGATGTTTTCCTTGAAACTAAAAAAAAAAGACCACATACTCGCATCAGCTTCACTATGCAGCTTCCATCTACAGCTGCAACGGTCCCATGAATGTTCT]
[+] EMBL CF297651 [GTCGTCGTCGTCTCCTCGATCGGGTTACCACGGCTGCGGGCTACGGCGACTAGCTTCCTTCTCTCGCCGAAGCGAGACCTCGCCTCCCCCGAGGAACCTGTGTGCAATAATTTGTTGTTACCTCTGGCATCCATAAGATGGAGGTCCTGAGTTGGAGAACGGTGTGCCTCTTGGTTCTCTGCACCGTGGCGTTGCTGCGCCCGGCTGCGGCTATCCGCTTTGTGATTGACAGGGAAGAGTGTTTCTCGCATAACGTGGAGTATGAGGGGGATACTGTTCATGTATCGTTCGTGGTGATCAAGGCTGACACCCCATGGCATTATAGCGAGGACGGAGTGGATCTTGTGGTTAAGGATCCTAATGGTGCTCAAGTCCGTGATTCTCGTGACAAGACTAGTGATAAGTTTGAGTTCATAGTTCAGAAGAGAGGCGTACATCGC TTCTG CTT CACCAATAAATCCCC ATACCATGAAACTGTAGATTTT GATGTGCATGTTGGCCATTTTTCGTAC TTTGATCAGCATGCGAAAGATGAACATTTTGCTCCTTTGTTTGAACAAATAGCAAAATTAGATGAAGCGCTTTACAACATTCAGTTCGAG ]
[+] EMBL AK073679 [ CGTCGTCGTCTCCTCGATCGGGTTACCACGGCTGCGGGCTACGGCGACTAGCTTCCTTCTCTCGCCGAAGCGAGACCTCGCCTCCCCCGAGGAACCTGTGTGCAATAATTTGTTGTTACCTCTGGCATCCATAAGATGGAGGTCCTGAGTTGGAGAACGGTGTGCCTCTTGGTTCTCTGCACCGTGGCGTTGCTGCGCCCGGCTGCGGCTATCCGCTTTGTGATTGACAGGGAAGAGTGTTTCTCGCATAACGTGGAGTATGAGGGGGATACTGTTCATGTATCGTTCGTGGTGATCAAGGCTGACACCCCATGGCATTATAGCGAGGACGGAGTGGATCTTGTGGTTAAGGATCCTAATGGTGCTCAAGTCCGTGATTCTCGTGACAAGACTAGTGATAAGTTTGAGTTCATAGTTCAGAAGAGAGGCGTACATCGC TTCTG CTT CACCAATAAATCCCC ATACCATGAAACTGTAGATTTT GATGTGCATGTTGGCCATTTTTCGTAC TTTGATCAGCATGCGAAAGATGAACATTTTGCTCCTTTGTTTGAACAAATAGCAAAATTAGATGAAGCGCTTTACAACATTCAGTTCGAGCAGCACTGGCTAGAGGCCCA AACTGACCGACAAGCTATATTGAACGAA AACATGAGCA GGAGGGCTGTCCA CAAGGCTCTATTGGAGTCAGCAGCGCTGATTGCAG CTAGCGTCATTCAAGTCTATCTATTGCGCCGCCTC TTTGAGCGCAAGTTGGGGACATCCAGGGTCTAAA TACT CCAAAAGTAGCAGCTCCTCCTAA TT TACACTCTCGTCATCCCAACTA AAGCTGTAGT TCCGAACTGTATTGGTTGC TAGATCTGCTGTTTACATG CTGTGGGTTGCTGTCACATAGA CCTTTAATTATTATGATTCCATTAGATGTTTT ]
[+] EMBL AU184236 [ GGTTACCACGGCTGCGGGCTACGGCGACTAGCTTCCTTCTCTCGCCGAAGCGAGACCTCGCCTCCCCCGAGGAACCTGTGTGCAATAATTTGTTGTTACCTCTGGCATCCATAAGATGGAGGTCCTGAGTTGGAGAACGGTGTGCCTCTTGGTTCTCTGCACCGTGGCGTTGCTGCGCCCGGCTGCGGCTATCCGCTTTGTGATTGACAGGGAAGAGTGTTTCTCGCATAACGTGGAGTATGAGGGGGATACTGTTCATGTATCGTTCGTGGTGATCAAGGCTGACACCCCATGGCATTATAGCGAGGACGGAGTGGATCTTGTGGTTAAGGATCCTAATGGTGCTCAAGTCCGNGATTCTCGTGAC ]
[+] EMBL OSC5931 [ TCCTTCTCTCGCCGAAGCGAGACCTCGCCTCCCCCGAGGAACCTGTGTGCAATAATTTGTTGTTACCTCTGGCATCCATAAGATGGAGGTCCTGAGTTGGAGAACGGTGTGCCTCTTGGTTCTCTGCACCGTGGCGTTGCTGCGCCCGGCTGCGGCTATCCGCTTTGTGATTGACAGGGAAGAGTGTTTCTCGCATAACGTGGAGTATGAGGGGGATACTGTTCATGTATCGTTCGTGGTGATCAAGGCTGACACCCCATGGCATTATAGCGAGGACGGAGTGGATCTTGTGGTTAAGGATCCTAATGGTGCTCAAGTCCGTGATTCTCGTGACAAGACTAGTGATAAGTTTGAGTTCATAGTTCAGAAGAGAGGCGTACATCGC TTCTG CTT CACCAATAAATCCCC ATACCATGNAACTGTAGATTTT GATGTGCATGTTGGCCANTTTTCGT ]
[+] EMBL CF304428 [ CGAGACCTCGCCTCCCCCGAGGAACCTGTGTGCAATAATTTGTTGTTACCTCTGGCATCCATAAGATGGAGGTCCTGAGTTGGAGAACGGTGTGCCTCTTGGTTCTCTGCACCGTGGCGTTGCTGCGCCCGGCTGCGGCTATCCGCTTTGTGATTGACAGGGAAGAGTGTTTCTCGCATAACGTGGAGTATGAGGGGGATACTGTTCATGTATCGTTCGTGGTGATCAAGGCTGACACCCCATGGCATTATAGCGAGGACGGAGTGGATCTTGTGGTTAAGGATCCTAATGGTGCTCAAGTCCGTGATTCTCGTGACAAGACTAGTGATAAGTTTGAGTTCATAGTTCAGAAGAGAGGCGTACATCGC TTCTG CTT CACCAATAAATCCCC ATACCATGAAACTGTAGATTTT GATGTGCATGTTGGCCATTTTTCGTAC TTTGATCAGCATGCGAAAGATGAACATTTTGCTCCTTTGTTTGAAC AATAGCAAAATTAGATGAAGCGCTT ]
[+] EMBL AK105383 [ TACCTCTGGCATCCATAAGATGGAGGTCCTGAGTTGGAGAACGGTGTGCCTCTTGGTTCTCTGCACCGTGGCGTTGCTGCGCCCGGCTGCGGCTATCCGCTTTGTGATTGACAGGGAAGAGTGTTTCTCGCATAACGTGGAGTATGAGGGGGATACTGTTCATGTATCGTTCGTGGTGATCAAGGCTGACACCCCATGGCATTATAGCGAGGACGGAGTGGATCTTGTGGTTAAGGATCCTAATGGTGCTCAAGTCCGTGATTCTCGTGACAAGACTAGTGATAAGTTTGAGTTCATAGTTCAGAAGAGAGGCGTACATCGC TTCTG CTT CACCAATAAATCCCC ATACCATGAAACTGTAGATTTT GATGTGCATGTTGGCCATTTTTCGTAC TTTGATCAGCATGCGAAAGATGAACATTTTGCTCCTTTGTTTGAACAAATAGCAAAATTAGATGAAGCGCTTTACAACATTCAGTTCGAGCAGCACTGGCTAGAGGCCCA AACTGACCGACAAGCTATATTGAACGAA AACATGAGCA GGAGGGCTGTCCA CAAGGCTCTATTGGAGTCAGCAGCGCTGATTGCAG CTAGCGTCATTCAAGTCTATCTATTGCGCCGCCTC TTTGAGCGCAAGTTGGGGACATCCAGGGTCTAAA TACT CCAAAAGTAGCAGCTCCTCCTAA TT TACACTCTCGTCATCCCAACTA AAGCTGTAAT TCCGAACTGTATTGGTTGC TAGATCTGCTGTTTACATG CTGTGGGTTGCTGTCACATAGA CCTTTAATTATTATGATTCCATTAGATGTTTTCCTTGAAACTATACTATCAGGACCACATACTCGCATCAGCTTCACTATGCAGCTTCCATCTACAGCTGCAACGGTCCCATGAATGTTCT]
[+] EMBL AU032756 [ ACTTCGCTTTCTGNCTTCCCCCAATAAATCCCCCAATACCATGAAACTGTAGATTTTGGATGTNCATGTTGGCCATTTTTCGTACTTTTGATCAGCATGCNAAAGATGAACATTTTGCTCCTTTGTTTGAACAAATAGCAAAATTAGATGAAGCGCTTTACAACATTCAGTTCGAGCAGCACTGGCTAGAGGCCCA AACTGACCGACAAGCTATATTGAACGAA AACATGAGCA GGAGGGCTGTCCA CAAGGCTCTATTGGAGTCAGCAGCGCTGATTGCAG CTAGCGTCATTCAAGTCTATCTATTGCGCCGCCTC TTTGAGCGCAAGTTGGGGACATCCAGGGTCTAAA TACT CCAAAAGTAGCAGCTCCTCCTAA TT TACACTCTCGTCATCCCAACTA AAGCTGTAAT TCCGAACTGTATTGGTTGC TAGATCTGCTGTTTACATG CTGTGGGTTGCTGTCACATAGA CCTTTAATTATTATGATTCCATTAGATGTTTTCCTTGAAAAAAAAAAAAAAA ]
[-] EMBL BI306507 [ GGCCATTTTTCGCAC TTCGATCAGCATGCGAAAGATGAACATTTTGCTCCTTTGTTTGAACAAATAGCAAAATTAGATGAAGCGCTTTACAACATTCAGTTCGAGCAGCCTTGGCTAGAGGCCCA AACTGACCGACAAGCTATATTGAACGAA AACATTAGCA GGAGGGCTGTCCA CAAGGCTCTATTGGAGTCAGCAGCGATGATTGCAG CTAGCGTCATTCAAGTCTATTTACTGCGCCGCCTC TTTGAGCGCAAGTTGGGGACATCCAGGGTCTAAA TACT CCAAAAGTAACAGCTCCTCCTAA TT TACACTCTCGTCATCCCAACTA AAGCTGTAAT TCCGTGCTGTATTGGTTGC TAGATTTGCTGTTTACACGTCTGTGGGTTGCTGTCACATAGA CCTTTAATTAT ]
[-] EMBL BI305500 [ GCCATTTTTCGTAC TTCGATCAGCATGCGAAAGATGAACATTTTGCTCCTTTGTTTGAACAAATAGCAAAATTAGATGAAGCGCTTTACAACATTCAGTTCGAGCAGCACTGGCTAGAGGCCCA AACTGACCGACAAGCTATATTGAACGAA AACATGAGCA GGAGGGCTGTCCA CAAGGCTCTATTGGAGTCAGCAGCGCTGATTGCAG CTAGCGTCATTCAAGTCTATCTATTGCGCCGCCTC TTTGAGCGCAAGTTGGGGACATCCAGGGTCTAAA TACT CCAAAAGTAGCAGCTCCTCCTAA TT TACACTCTCGTCATCCCAACTA AAGCTGTAAT TCCGTACTGTATTGGTTGC TAGATCTGCTGTTTACATG CTGTGGGTTGCTGTCACATAGA CCTTTAATTA ]
[+] EMBL BQ906026 [ TTTCGTAC TTCGATCAGCATGCGAAAGATGAACATTTTGCTCCTTTGTTTGAACAAATAGCAAAATTAGATGAAGCGCTTTACAACATTCAGTTCGAGCAGCACTGGCTAGAGGCCCACAACTGACCGACAAGCTATATTGAACGAA AACATGAGCACGGAGGGCTGTCCA CAAGGCTCTATTGGAGTCAGCAGCGCTGATTGCAG CTAGCGTCATTCAAGTCTATCTATTGCGCCGCCTC TTTGAGCGCAAGTTGGGGACATCCAGGGTCTAAA TACT CCCAAAGTAGCAGCTCCTCCTAA TT TACACTCTCGTCATCCCAACTA AAGCTGTAAT TCCGTACTGTATTGGTTGC TAGATCTGCTGTTTACATG CTGTGGGTTGCTGTCACATAGACCCTTTAATTATTATGATTCCATTAGATGTTTTCCTTGAAACTAAAAAAAAAA ]
[-] EMBL BI118620 [ GCATGCGAAAGATGAACATTTTGCTCCTTTGTTTGAACAAATAGCAAAATTAGATGAAGCCCTTTACAACATTCAGTTCGAGCAGCACTGGCTAGAGGCCCA AACTGACCGACAAGCTATATTGAACGAA AACATGAGCG GGAGGGCTGTCCA CAAGGCTCTATTGGAGTCAGCAGCGCTGATTGCAG CTAGCGTCATTCAAGTCTATCTATTGCGCCGCCTC TTTGAGCGCAAGTTGGGGACATCCAGGGTCTAAA TACT CCAAAAGTAGCAGCTCCTCCTAA TT TACACTCTCGTCATCCCAACTA AAGCTG ]
[-] EMBL BI118624 [ GCATGCGAAAGATGAACATTTTGCTCCTTTGTTTGAACAAATAGCAAAATTAGATGAAGCCCTTTACAACATTCAGTTCGAGCAGCACTGGCTAGAGGCCCA AACTGACCGACAAGCTATATTGAACGAA AACATGAGCG GGAGGGCTGTGCA CAAGGCTCTATTGGAGTCAGCAGCGCTGATTGCAG CTAGCGTCATTCAAGTCTATCTATTGCGCCGCCTC TTTGAGCGCAAGTTGGGGACATCCAGGGTCTAAA TACT CCAAAAGTAGCAGCTCCTCCTAA CT TACACTCTCGTCATCCCAACTA AAGCTG ]
[+] EMBL BI796414 [ ATATTGAACGAAGTACATGAGCACGGAGGGCTGTCCACCAAGGCTCTATTGGAGTCAGCAGCGCTGATTGCAGTCTAGCGTCATTCAAGTCTATCTATTGCGCCGCCTCGTTTGAGCGCAAGTTGGGGACATCCAGGGTCTAAAGTACTCCCAAAAGTAGCAGCTCCTCCTAAGTTGTACACTCTCGTCATCCCCACTATAAGCTGTAATGTCCGTACTGTATTGGTTGCGTAGATCT CTGTTTACATG CTGTGGGTTGCTGTCACATAGA CCTTTAATTATTATGATTCCCTTAGATGTTTTCCTTGAAA AAAAAAA ]
consensusID : consensus_15311#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 693 fasta sequence
[CATAATGTTGATTATGAAGGAGATACAGCTCATGTATCCTTTGTTGTGATCAAGGCAGAGACGCCATGGCATTATACCGAGGATGGCGTGGATCTTGTGGTTACAGATCCCAATGGGAATCAAATCCATGATTCCCGTGACAAGATCAGCGATCAGTTTGAATTCATAGTTCATATGAGACGCGTTCACCGCTTCTGCTTCACCAATAAATCCCCATACCATGAAACTGTAGATTTTGATGTACTTGTTAGTCACTTTTCGTATTATGACCAGCATGCCAAAGATGAACATTTCAGCGCCTTGTTTGAGCAAATTGCAAAGTTGGATGAAGCCCTCTACAACATTCAGTTTGAACAGCACTGGTTGGAGGCCCAAACAGACCGGCAAGCAATATTAAACGAGAACATGAGTAGGAGGGCAGTTCCCAAGGCATTCTTTGAATCAGCTGCTCTCATTGCAGCCAGTGTTGTGCAGGTCTACCTACTGCATCTCCTCTTTGAGCGAAAGCTGGGAACATCGAGGGTCTAATTCTCTGATAGTAGGTCTCCTTATACTCACCAACCCAACTGTATTTCAATGCTACAAAATGTGTTTACAATATCTGTTACATCCTGCTCAGATATTTAGCATTTTTGTTCAGAATTTTGTAATTCAGTTATTTACAGTACTGTGCTGCAGTAAAAAAAAAAAAAA]
[+] EMBL CA999561 [CATAATGTTGATTATGAAGGAGATACAGCTCATGTATCCTTTGTTGTGATCAAGGCAGAGACGCCATGGCATTATACCGAGGATGGCGTGGATCTTGTGGTTACAGATCCCAATGGGAATCAAATCCATGATTCCCGTGACAAGATCAGCGATCAGTTTGAATTCATAGTTCATATGAGACGCGTTCACCGCTTCTGCTTCACCAATAAATCCCCATACCATGAAACTGTAGATT ]
[-] EMBL CA762221 [ TGAAGGAGATCCAGTCCATGTATCCTCTGTTGTGATCAAGGCAGAGACGCCATGGCATTATACCGAGGATGGCGTGGATCTTGTGGTTAGAGATCCCAATGGTAATCAAATCCATGATTCCCGTGACAAGATCAGCGATAAGTTTGAATTCATAGTTCATAGGAGAGGCGTTCACCGCTTCTGCTTCACCAATAAATCCCCATACCATGAAACTGTAGATTTTGATGTACTTGTTAGTCACTTTTCGTATTATGACCAGCATGCCAAAGATGAACATTTCAGCGCCTTGTTTGAGCAAATTGCAAAGTTGGATGAAGCCCTCTACAACATTCAGTTTGAACAGCACTGGTTGGAGGCCCAAACAGACCGGCAAGCAATATTAAACGAGAACATGAGTAGGAGGGCAGTTCCCAAGGCATTCTTTGAATCAGCTGCTCTCATTGCAGCCAGTGTTGTGCAGGTCTACCTACTGCATCTCCTCTTTGAGCGAAAGCTGGGAACATCGAGGGTCTAATTCTCTGATAGTAGGTCTCCTTATACTCACCAACCCAACTGTATTTCAATGCTACAAAATGTGTTTACAATATCTGTTACATCCTGCTCAGATATTTAGCATTTTTGTTCAGAATTTTGTAATTCAGTTATTTACAGTACTGTGCTGCAGTAAAAAAAAAAAAAA]
[+] EMBL AU058205 [ CCGCTTCTGCTTCACCAATAAATCCCCATACCATGAAACTGTAGATTTTGATGTACTTGTTAGTCACTTTTCGTATTATGACCAGCATGCCAAAGATGAACATTTCAGCGCCTTGTTTGAGCAAATTGCAAAGTTGGATGAAGCCCTCTACAACATTCAGTTTGAACAGCACTGGTTGGAGGCCCAAACAGACCGGCAAGCAATATTAAACGAGAACATGAGTAGGAGGGCAGTTCACAAGGCATTCTTTGAATCAGCTGCTCTCATTGCAGCCAGTGTTGTGCAGGTCTACCTACTGCATCGCCTCTTTGAGCGAAA NTGGGAACATCGAGGGTCTAATTCTCTGATAGTANGNCTCCTTAGACTCACCAACC ACTGTA TTCAATGCTGC AAATGTG TTACAATATCTG TACATCCTGCTCAGATA TTAGCA TTTTGGTCAGAATTTTGTA ]
consensusID : consensus_15311#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 505 fasta sequence
[CCATGAAACTGTAGATTTTGATGTCCATTTGCCACTTTTTCGTACTTCGATCAGCATGCGAAAGATGAACATTTTGCTCCTTTGTTTGAACCAATACCCAAATTTAGATTGGAAAGCCGCTTTACCAACATTCAGTTTCGAGCCAGCACTGGCTAGAGGCCCCAACTGACCGACAAGCTATATTGAACGAAAACATGAGCAGGAGGGCTGTCCACAAGGCTCTATTGGAGTCAGCAGCGCTGATTGCAGCTAGCGTCATTCAAGTCTATCTATTGCGCCGCCTCTTTGAGCGCAAGTTGGGGACATCCAGGGTCTAAATACTCCAAAGTAGCAGCTCCTCCTAATTTACACTCTCGTCATCCCAACTAAAGCTGTAATTCCGTACTGTATTGGTTGCTAGATCTGCTGTTTACATGCTGTGGGTTGCTGTCACATAGACCTTTAATTATTATGATTCCATTAGATGTTTTCCTTGAAACTATACTGTCAGGACCCAAAAAAAAAA]
[+] EMBL BI811014 [CCATGAAACTGTAGATTTTGATGTCCATTTGCCACTTTTTCGTACTTCGATCAGCATGCGAAAGATGAACATTTTGCTCCTTTGTTTGAACCAATACCCAAATTTAGATTGGAAAGCCGCTTTACCAACATTCAGTTTCGAGCCAGCACTGGCTAGAGGCCCCAACTGACCGACAAGCTATATTGAACGAAAACATGAGCAGGAGGGCTGTCCACAAGGCTCTATTGGAGTCAGCAGCGCTGATTGCAGCTAGCGTCATTCAAGTCTATCTATTGCGCCGCCTCTTTGAGCGCAAGTTGGGGACATCCAGGGTCTAAATACTCCAAAGTAGCAGCTCCTCCTAATTTACACTCTCGTCATCCCAACTAAAGCTGTAATTCCGTACTGTATTGGTTGCTAGATCTGCTGTTTACATGCTGTGGGTTGCTGTCACATAGACCTTTAATTATTATGATTCCATTAGATGTTTTCCTTGAAACTATACTGTCAGGACCCAAAAAAAAAA]
consensusID : consensus_15311#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 449 fasta sequence
[CATGAGTAGGAGGGCAGTTCACAAGGCATTCTTTGAATCAGCTGCTCTCATTGCAGCCAGTGTTGTGCAGGTCTACCTACTGCATCGCCTCTTTGAGCGAAAGCTGGGAACATCCGAGGGTCTAATTCTCTGATAGTAGGTCTCCTTAGACTCACCAACCCAACTGTATTTCAATGCTGCAAAATGTGTTTACAATATCTGTTACATCCTGCTCAGATATTTAGCATTTTTGTTCAGAATTTTGTAATTCAGTTATTTACAGTACTGTGCTGCAGTAACTTGCCGCCTCATCAGATTCATTTCAGCGCATTATATCTATCGTCACATGTATATTAGGTCCTAAGTATTTCCACGGTACGCACTGCTTTAAAACCTTTTTTGCGATCAAGGTACAGGAGTGCTAGTATTGAGAAAGAAAATGAAGAAAGAATTCCTTTTCTGAAAAAAAA]
[+] EMBL AU091954 [CATGAGTAGGAGGGCAGTTCACAAGGCATTCTTTGAATCAGCTGCTCTCATTGCAGCCAGTGTTGTGCAGGTCTACCTACTGCATCGCCTCTTTGAGCGAAAGCTGGGAACATCCGAGGGTCTAATTCTCTGATAGTAGGTCTCCTTAGACTCACCAACCCAACTGTATTTCAATGCTGCAAAATGTGTTTACAATATCTGTTACATCCTGCTCAGATATTTAGCATTTTTGTTCAGAATTTTGTAATTCAGTTATTTACAGTACTGTGCTGCAGTAACTTGCCGCCTCATCAGATTCATTTCAGCGCATTATATCTATCGTCACATGTATATTAGGTCCTAAGTATTTCCACGGTACGCACTGCTTTAAAACCTTTTTTGCGATCAAGGTACAGGAGTGCTAGTATTGAGAAAGAAAATGAAGAAAGAATTCCTTTTCTGAAAAAAAA]
[+] EMBL CA765214 [ GCTGGGAACAT CGAGGGTCTAATTCTCCGATAGTAGGTCTCCTTATACTCACCAACCCAACTGTATTTCAATGCTGCAAAATGTGTTTACAATATCTGTTACATCCTGCTCAGATATTTAGCATTTTTGTTCAGAATTTTGTAATTCAGTTATTTACAGTACTGTGCTGCAGTAACTTGCCGCCTCATCAGATTCATTTCAGCACATTATATCTATCGTCACATGTATATTAGGTCCTAAGTATTTCCACGGTAaaa ]
consensusID : consensus_15311#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 444 fasta sequence
[GGCCATTTTTCGTCCTTAGATCAGCATGCGAAAGATGAACATTTTGCTCCTTTGTTTGAACATATAGCAAAATTAGATGAAGCGCTTTACAACATTAAGTTCGACACCCCACCACAAGTCCATAAGCTTACAGCTCTTGTAATAAGGGCCGCTAACCGACAGGGTGGGGCAGTAATATAGGGTAGTATCGGAATTTAGTGGAGTAGTCCTTGGTAGCGATCACCAAGCCAAGCCCTTTGCGAGCACCTTTGAAGGCGGTTTCCGCAAATGTCGATGTATTCATGCTTGTCCATCAAGGCCCAGTTGATATTGTCGCTGTTTCCAGCGCCCAGATCGATCATGATGTGGTTGTGGAGGAAGAAGAACATCGCCGTTGACGAGATCATGCAGCTCGTTCAGAGTGTCCAAGTATGGATCGTTGGTGAAGAAAACCAGGAGATGTCG]
[-] EMBL BI306506 [GGCCATTTTTCGTCCTTAGATCAGCATGCGAAAGATGAACATTTTGCTCCTTTGTTTGAACATATAGCAAAATTAGATGAAGCGCTTTACAACATTAAGTTCGACACCCCACCACAAGTCCATAAGCTTACAGCTCTTGTAATAAGGGCCGCTAACCGACAGGGTGGGGCAGTAATATAGGGTAGTATCGGAATTTAGTGGAGTAGTCCTTGGTAGCGATCACCAAGCCAAGCCCTTTGCGAGCACCTTTGAAGGCGGTTTCCGCAAATGTCGATGTATTCATGCTTGTCCATCAAGGCCCAGTTGATATTGTCGCTGTTTCCAGCGCCCAGATCGATCATGATGTGGTTGTGGAGGAAGAAGAACATCGCCGTTGACGAGATCATGCAGCTCGTTCAGAGTGTCCAAGTATGGATCGTTGGTGAAGAAAACCAGGAGATGTCG]
consensusID : consensus_15311#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 323 fasta sequence
[CGAAAACCATGAGCAGGAGGGCTGTCCCCAAGGCTNTATTGGAGTCAGCAGCCGCTGATTGCAAGCTAGGCGTCCATTCCAAGTCTATNTTATTGGCGCCCGCCTCTTTTGAGGCGCCAAGGTGGGGGCCATCCCAGGGGTNTAAAAACTCCCAAAAAGTAGCAGCTCCCTCCTAATTTCCACTCTCGTCATCNCCAACTAAAAGCTGTAATTCCGAACTGNATTGGTTGCTAGATCTGCTGTTTNCATGCTGTGGGGNTGCTGTCACATAAGNCCCNTTAATTATTATGATTCCNTTAGATGTTTTCCTTGAAAAAAAAAAA]
[+] EMBL AU184237 [CGAAAACCATGAGCAGGAGGGCTGTCCCCAAGGCTNTATTGGAGTCAGCAGCCGCTGATTGCAAGCTAGGCGTCCATTCCAAGTCTATNTTATTGGCGCCCGCCTCTTTTGAGGCGCCAAGGTGGGGGCCATCCCAGGGGTNTAAAAACTCCCAAAAAGTAGCAGCTCCCTCCTAATTTCCACTCTCGTCATCNCCAACTAAAAGCTGTAATTCCGAACTGNATTGGTTGCTAGATCTGCTGTTTNCATGCTGTGGGGNTGCTGTCACATAAGNCCCNTTAATTATTATGATTCCNTTAGATGTTTTCCTTGAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15311#1 ------------------------------------------------------------
consensus_15311#3 ------------------------------------------------------------
consensus_15311#2 ------------------------------------------------------------
consensus_15311#5 ------------------------------------------------------------
consensus_15311#0 GTCGTCGTCGTCTCCTCGATCGGGTTACCACGGCTGCGGGCTACGGCGACTAGCTTCCTT 60
consensus_15311#4 ------------------------------------------------------------
consensus_15311#1 ------------------------------------------------------------
consensus_15311#3 ------------------------------------------------------------
consensus_15311#2 ------------------------------------------------------------
consensus_15311#5 ------------------------------------------------------------
consensus_15311#0 CTCTCGCCGAAGCGAGACCTCGCCTCCCCCGAGGAACCTGTGTGCAATAATTTGTTGTTA 120
consensus_15311#4 ------------------------------------------------------------
consensus_15311#1 ------------------------------------------------------------
consensus_15311#3 ------------------------------------------------------------
consensus_15311#2 ------------------------------------------------------------
consensus_15311#5 ------------------------------------------------------------
consensus_15311#0 CCTCTGGCATCCATAAGATGGAGGTCCTGAGTTGGAGAACGGTGTGCCTCTTGGTTCTCT 180
consensus_15311#4 ------------------------------------------------------------
consensus_15311#1 ------------------------------------------------------------
consensus_15311#3 ------------------------------------------------------------
consensus_15311#2 ------------------------------------------------------------
consensus_15311#5 ------------------------------------------------------------
consensus_15311#0 GCACCGTGGCGTTGCTGCGCCCGGCTGCGGCTATCCGCTTTGTGATTGACAGGGAAGAGT 240
consensus_15311#4 ------------------------------------------------------------
consensus_15311#1 --------CATAATGTTGATTATGAAGGAGATACAGCTCATGTATCCTTTGTTGTGATCA 52
consensus_15311#3 ------------------------------------------------------------
consensus_15311#2 ------------------------------------------------------------
consensus_15311#5 ------------------------------------------------------------
consensus_15311#0 GTTTCTCGCATAACGTGGAGTATGAGGGGGATACTGTTCATGTATCGTTCGTGGTGATCA 300
consensus_15311#4 ------------------------------------------------------------
consensus_15311#1 AGGCAGAGACGCCATGGCATTATACCGAGGATGGCGTGGATCTTGTGGTTACAGATCCCA 112
consensus_15311#3 ------------------------------------------------------------
consensus_15311#2 ------------------------------------------------------------
consensus_15311#5 ------------------------------------------------------------
consensus_15311#0 AGGCTGACACCCCATGGCATTATAGCGAGGACGGAGTGGATCTTGTGGTTAAGGATCCTA 360
consensus_15311#4 ------------------------------------------------------------
consensus_15311#1 ATGGGAATCAAATCCATGATTCCCGTGACAAGATCAGCGATCAGTTTGAATTCATAGTTC 172
consensus_15311#3 ------------------------------------------------------------
consensus_15311#2 ------------------------------------------------------------
consensus_15311#5 ------------------------------------------------------------
consensus_15311#0 ATGGTGCTCAAGTCCGTGATTCTCGTGACAAGACTAGTGATAAGTTTGAGTTCATAGTTC 420
consensus_15311#4 ------------------------------------------------------------
consensus_15311#1 ATATGAGACGCGTTCACCGCTTCTGCTTCACCAATAAATCCCCATACCATGAAACTGTAG 232
consensus_15311#3 ------------------------------------------------------------
consensus_15311#2 ----------------------------------------------CCATGAAACTGTAG 14
consensus_15311#5 ------------------------------------------------------------
consensus_15311#0 AGAAGAGAGGCGTACATCGCTTCTGCTTCACCAATAAATCCCCATACCATGAAACTGTAG 480
consensus_15311#4 ------------------------------------------------------------
consensus_15311#1 ATTTTGATGTACTTGTTAGTCACTTTTCGTATTATGACCAGCATGCCAAAGATGAACATT 292
consensus_15311#3 ------------------------------------------------------------
consensus_15311#2 ATTTTGATGTCCAT-TTGCCACTTTTTCGTACTTCGATCAGCATGCGAAAGATGAACATT 73
consensus_15311#5 ------------------------------------------------------------
consensus_15311#0 ATTTTGATGTGCATGTTGGCCATTTTTCGTACTTTGATCAGCATGCGAAAGATGAACATT 540
consensus_15311#4 -----------------GGCCATTTTTCGTCCTTAGATCAGCATGCGAAAGATGAACATT 43
consensus_15311#1 TCAGCGCCTTGTTTGAGCAAATTGCAAA------GTTGGATGAAGCCCTCTACAACATTC 346
consensus_15311#3 ------------------------------------------------------------
consensus_15311#2 TTGCTCCTTTGTTTGAACCAATACCCAAATTTAGATTGGAAAGCCGCTTTACCAACATTC 133
consensus_15311#5 ------------------------------------------------------------
consensus_15311#0 TTGCTCCTTTGTTTGAACAAATAGCAAA------ATTAGATGAAGCGCTTTACAACATTC 594
consensus_15311#4 TTGCTCCTTTGTTTGAACATATAGCAAA------ATTAGATGAAGCGCTTTACAACATTA 97
consensus_15311#1 AGTTT--GAACAGCACTGGTTGGAGGCCCAAACAGACCGG-CAAGCAATATTAAACGAGA 403
consensus_15311#3 ------------------------------------------------------------
consensus_15311#2 AGTTTCGAGCCAGCACTGGCTAGAGGCCCCAACTGACCGA-CAAGCTATATTGAACGAAA 192
consensus_15311#5 -------------------------------------------------------CGAAA 5
consensus_15311#0 AGTTC--GAGCAGCACTGGCTAGAGGCCCAAACTGACCGA-CAAGCTATATTGAACGAAA 651
consensus_15311#4 AGTTC---GACACCCCACCACAAGTCCATAAGCTTACAGCTCTTGTAATAAGGGCCGCTA 154
consensus_15311#1 AC-ATGAGTAGGAGGGCAGTT-CCCAAGGCATTCTTTGAATCAGCTGC-TCTCATTGCA- 459
consensus_15311#3 -C-ATGAGTAGGAGGGCAGTT-CACAAGGCATTCTTTGAATCAGCTGC-TCTCATTGCA- 55
consensus_15311#2 AC-ATGAGCAGGAGGGCTGTC-CACAAGGCTCTATTGGAGTCAGCAGC-GCTGATTGCA- 248
consensus_15311#5 ACCATGAGCAGGAGGGCTGTC-CCCAAGGCTNTATTGGAGTCAGCAGCCGCTGATTGCAA 64
consensus_15311#0 AC-ATGAGCAGGAGGGCTGTC-CACAAGGCTCTATTGGAGTCAGCAGC-GCTGATTGCA- 707
consensus_15311#4 ACCGACAG-GGTGGGGCAGTAATATAGGGTAGTATCGGAATT--TAGTGGAGTAGTCCTT 211
* ** * **** ** * ** * * ** * * * * *
consensus_15311#1 GCCAG-TGTTG--TGCAGGTCTACCT-ACTG-CATC-TCCTCTTT--GAGCGA--AAGCT 509
consensus_15311#3 GCCAG-TGTTG--TGCAGGTCTACCT-ACTG-CATC-GCCTCTTT--GAGCGA--AAGCT 105
consensus_15311#2 GCTAG-CGTCA--TTCAAGTCTATCT-ATTG-CGCC-GCCTCTTT--GAGCGC--AAGTT 298
consensus_15311#5 GCTAGGCGTCCATTCCAAGTCTATNTTATTGGCGCCCGCCTCTTTTGAGGCGCCAAGGTG 124
consensus_15311#0 GCTAG-CGTCA--TTCAAGTCTATCT-ATTG-CGCC-GCCTCTTT--GAGCGC--AAGTT 757
consensus_15311#4 GGTAGCGATCA---CCAAGCCAAGCCCTTTG---CGAGCACCTTTGAAGGCGG--TTTCC 263
* ** * ** * * * ** * **** ***
consensus_15311#1 GGGAACATC--GAGGGTCTAATT-CTCT-----GATAGTAGGTCT--CCTTATACTCACC 559
consensus_15311#3 GGGAACATCC-GAGGGTCTAATT-CTCT-----GATAGTAGGTCT--CCTTAGACTCACC 156
consensus_15311#2 GGGGACATCC--AGGGTCTAAATACTCC---AAAGTAGCAGCTCC-TCCTAATTTACACT 352
consensus_15311#5 GGGGCCATCCCAGGGGTNTAAAAACTCCCAAAAAGTAGCAGCTCCCTCCTAATTTCCACT 184
consensus_15311#0 GGGGACATCC--AGGGTCTAAATACTCC--AAAAGTAGCAGCTCC-TCCTAATTTACACT 812
consensus_15311#4 GCAAATGTCGATGTATTCATGCTTGTCC------ATCAAGGCCCAGTTGATATTGTCGCT 317
* ** * ** * * * * * *
consensus_15311#1 AAC-CCAAC-TGTATTTCAATGCTACAAAATGTGTTTACAATATCTGTTACATC--CTGC 615
consensus_15311#3 AAC-CCAAC-TGTATTTCAATGCTGCAAAATGTGTTTACAATATCTGTTACATC--CTGC 212
consensus_15311#2 CTCGTCATC-CC-AACTAAA-GCTGTAATTCCGTACTGTATTGGTTGCTAGATCTGCTGT 409
consensus_15311#5 CTCGTCATC-NCCAACTAAAAGCTGTAATTCCGAACTGNATTGGTTGCTAGATCTGCTGT 243
consensus_15311#0 CTCGTCATC-CC-AACTAAA-GCTGTAATTCCGTACTGTATTGGTTGCTAGATCTGCTGT 869
consensus_15311#4 GTTTCCAGCGCCCAGATCGA--TCATGATGTGGTTGTGGAGGAAGAAGAACATC-GCCGT 374
** * * * * * * * * *** * *
consensus_15311#1 TCAGATATT-TAGCATTTTTGTT-CAGAATTT--TGTAATTCAGTTATTTACAGTAC-TG 670
consensus_15311#3 TCAGATATT-TAGCATTTTTGTT-CAGAATTT--TGTAATTCAGTTATTTACAGTAC-TG 267
consensus_15311#2 TTACATGCTGTGGG-TTGCTGTCACATAGACC--TTTAATTATTATGATTCCATTAGATG 466
consensus_15311#5 TTNCATGCTGTGGGGNTGCTGTCACATAAGNCCCNTTAATTATTATGATTCCNTTAGATG 303
consensus_15311#0 TTACATGCTGTGGG-TTGCTGTCACATAGACC--TTTAATTATTATGATTCCATTAGATG 926
consensus_15311#4 TGACGAGAT-CATGCAGCTCGTT-CAGAGTGT---CCAAGTATG--GATCGTTGGTGAAG 427
* * ** ** * ** * * *
consensus_15311#1 TGCTGCAGTAAAAAAAAAAAAAA------------------------------------- 693
consensus_15311#3 TGCTGCAGTAACTTGCCGCCTCATCAGATTCATTTCAGCGCATTATATCTATCGTCACAT 327
consensus_15311#2 TTTTCCTTGAAACTATACTGTCAGGACCCAAAAAAAAAA--------------------- 505
consensus_15311#5 TTTTCCTTGAAAAAAAAAAA---------------------------------------- 323
consensus_15311#0 TTTTCCTTGAAACTAAAAAAAAAAGACCACATACTCGCATCAGCTTCACTATGCAGCTTC 986
consensus_15311#4 AAAACCAGGAGATGTCG------------------------------------------- 444
* *
consensus_15311#1 ------------------------------------------------------------
consensus_15311#3 GTATATTAGGTCCTAAGTATTTCCACGGTACGCACTGCTTTAAAACCTTTTTTGCGATCA 387
consensus_15311#2 ------------------------------------------------------------
consensus_15311#5 ------------------------------------------------------------
consensus_15311#0 CATCTACAGCTGCAACGGTCCCATGAATGTTCT--------------------------- 1019
consensus_15311#4 ------------------------------------------------------------
consensus_15311#1 ------------------------------------------------------------
consensus_15311#3 AGGTACAGGAGTGCTAGTATTGAGAAAGAAAATGAAGAAAGAATTCCTTTTCTGAAAAAA 447
consensus_15311#2 ------------------------------------------------------------
consensus_15311#5 ------------------------------------------------------------
consensus_15311#0 ------------------------------------------------------------
consensus_15311#4 ------------------------------------------------------------
consensus_15311#1 --
consensus_15311#3 AA 449
consensus_15311#2 --
consensus_15311#5 --
consensus_15311#0 --
consensus_15311#4 --
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||