cluster # 15317

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 15317 cluster # 15317 Sequences # 21 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_15317#0 length = 1107 sequences # 17
consensus_15317#1 length = 589 sequences # 1

consensus_15317#2 length = 463 sequences # 1
consensus_15317#3 length = 378 sequences # 2

consensusID : consensus_15317#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 17
consensus length = 1107
fasta sequence

                              [GAGTAGAAAGTTACCACCACCACCACCTGCAAGCAACCAACCAACCACCACCCGCTCGCTCGCCGACCGCCACCGGCGACCCAATCACCCCTCGCCGCCGCCGCCGGAGAAGGAGGAGGAGGGAGGGAGCAGCCGGCAGCGGGGAGGGGGCGCGCTGCGCCGTTG-ATGAGATGAAGGAGGTGGTGCTCCACGTGTACGACGTGACGAACAGCGACTCGGAGAAGACGAACAACACCATCCTCCAGATCAACCGCATCTTCAAGGACCGGATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGGTCTATGGCGAGGAGGAGTGGTCGTTCGGGTTCTGCGAGAACGGCAGCGGCGTCTTCAGC-TGCCCCATCGGGAAGAACCCCATGTACACCTACCGCGAGTGCATCGTCCTCGGGGAGACCGAGTGCTCCATCGCCACCGTGAACCGGATCCTGCGGGAGCTCAGCCGCGAGTGGCCGGGACACTCCTACGACCTCCTCTCCAGGAACTGCAACCACTTCTGCGACGTGCTCTGCGAGAGGCTCGCCGT-CCCCAAGCTCCCAGGCTGGGTTAATCGTTTTGCCAATGCTGGTGATACCGCTGTGGTAGTTGCTGAGAACACAGCAGTTAAGT-TCAGACAGGCTAAAACAGAAA-TAGT-CAATGCCAGTAGAGTAGCATACAGATTTATGGCAGGCCTGGCATCGAAAAATCAAAA-CCCACAACCAGAGTCCCCAAGTAACCAAAGCAGAAATGGCCCAACTTTCCAGGGGACTTGGTTCAAGAACATCATTTCGAATGGCGCAAAGCCTTCCTCAAGCGAATCAACTTCATCGCATGACACTGGTACTGGTGGTGATGAATCCTCTTTGCAGAATCAAAAACCGTCGGA-GCAGTCAACACGGTTGTAGCCGCTGCCACCAGTTATCACCTGTTGAATTGAATCTGTAGTGTAACAGTAGCCA-GCATTTGTTAAAAATACATGGCATGTTTATTCACGCATGAATCTCTTGTATCT-CTGCGTTGTCTTGCAACGGGAAACATGAAATGTTAAAACACGTCATCCAAAGCTTGACAGTTTAAAAAAAATTTTCTGTCACTCAAAAA]

[+] EMBL CF334366             [GAGTAGAAAGTTACCACCACCACCACCTGCAAGCAACCAACCAACCACCACCCGCTCGCTCGCCGACCGCCACCGGCGACCCAATCACCCCTCGCCGCCGCCGCCGGAGAAGGAGGAGGAGGGAGGGAGCAACCGGCAGCGGGGAGGGGGCGCGCTGCGCCGTTG ATGAGATGAAGGAGGTGGTGCTCCACGTGTACGACGTGACGAACAGCGACTCGGAGAAGACGAACAACACCATCCTCCAGATCAACCGCATCTTCAAGGACCGGATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGGTCTATGGCGAGGAGGAGTGGTCGTTCGGGTTCTGCGAGAACGGCAGCGGCGTCTTCAGC TGCCCCATCGGGAAGAACCCCATGTACACCTACCGCGAGTGCATCGTCCTCGGGGAGACCGAGTGCTCCATCGCCACCGTGAACCGGATCCTGCGGGAGCTCAGCCGCGAGTGGCCGGGACACTCCTACGACCTCCTCTCCAGGAACTGCAACCACTTCTGCGACGTGCTCTGCGAGAGGCTCGCCGT CCCCAAGCTCCCAGGCTGGGTTAATCGTTTTGCCAATGCTGGTGATACCGCTGTGGTAGTTGCTGAG ACACAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AK104667             [     aAAAGTTACCACCACCACCACCTGCAAGCAACCAACCAACCACCACCCGCTCGCTCGCCGACCGCCACCGGCGACCCAATCACCCCTCGCCGCCGCCGCCGGAGAAGGAGGAGGAGGGAGGGAGCAGCCGGCAGCGGGGAGGGGGCGCGCTGCGCCGTTG ATGAGATGAAGGAGGTGGTGCTCCACGTGTACGACGTGACGAACAGCGACTCGGAGAAGACGAACAACACCATCCTCCAGATCAACCGCATCTTCAAGGACCGGATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGGTCTATGGCGAGGAGGAGTGGTCGTTCGGGTTCTGCGAGAACGGCAGCGGCGTCTTCAGC TGCCCCATCGGGAAGAACCCCATGTACACCTACCGCGAGTGCATCGTCCTCGGGGAGACCGAGTGCTCCATCGCCACCGTGAACCGGATCCTGCGGGAGCTCAGCCGCGAGTGGCCGGGACACTCCTACGACCTCCTCTCCAGGAACTGCAACCACTTCTGCGACGTGCTCTGCGAGAGGCTCGCCGT CCCCAAGCTCCCAGGCTGGGTTAATCGTTTTGCCAATGCTGGTGATACCGCTGTGGTAGTTGCTGAGAACACAGCAGTTAAGT TCAGACAGGCTAAAACAGAAA TAGT CAATGCCAGTAGAGTAGCATACAGATTTATGGCAGGCCTGGCATCGAAAAATCAAAA CCCACAACCAGAGTCCCCAAGTAACCAAAGCAGAAATGGCCCAACTTTCCAGGGGACTTGGTTCAAGAACATCATTTCGAATGGCGCAAAGCCTTCCTCAAGCGAATCAACTTCATCGCATGACACTGGTACTGGTGGTGATGAATCCTCTTTGCAGAATCAAAAACCGTCGGA GCAGTCAACACGGTTGTAGCCGCTGCCACCAGTTATCACCTGTTGAATTGAATCTGTAGTGTAACAGTAGCCA GCATTTGTTAAAAATACATGGCATGTTTATTCACGCATGAATCTCTTGTATCT CTGCGTTGTCTTGCAACGGGAAACATGAAATGTTAAAACACGTCATCCAAAGC                                    ]
[+] EMBL AK073543             [                 CACCACCACCTGCAAGCAACCAACCAACCACCACCCGCTCGCTCGCCGACCGCCACCGGCGACCCAATCACCCCTCGCCGCCGCCGCCGGAGAAGGAGGAGGAGGGAGGGAGCAGCCGGCAGCGGGGAGGGGGCGCGCTGCGCCGTTG ATGAGATGAAGGAGGTGGTGCTCCACGTGTACGACGTGACGAACAGCGACTCGGAGAAGACGAACAACACCATCCTCCAGATCAACCGCATCTTCAAGGACCGGATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGGTCTATGGCGAGGAGGAGTGGTCGTTCGGGTTCTGCGAGAACGGCAGCGGCGTCTTCAGC TGCCCCATCGGGAAGAACCCCATGTACACCTACCGCGAGTGCATCGTCCTCGGGGAGACCGAGTGCTCCATCGCCACCGTGAACCGGATCCTGCGGGAGCTCAGCCGCGAGTGGCCGGGACACTCCTACGACCTCCTCTCCAGGAACTGCAACCACTTCTGCGACGTGCTCTGCGAGAGGCTCGCCGT CCCCAAGCTCCCAGGCTGGGTTAATCGTTTTGCCAATGCTGGTGATACCGCTGTGGTAGTTGCTGAGAACACAGCAGTTAAGT TCAGACAGGCTAAAACAGAAA TAGT CAATGCCAGTAGAGTAGCATACAGATTTATGGCAGGCCTGGCATCGAAAAATCAAAA CCCACAACCAGAGTCCCCAAGTAACCAAAGCAGAAATGGCCCAACTTTCCAGGGGACTTGGTTCAAGAACATCATTTCGAATGGCGCAAAGCCTTCCTCAAGCGAATCAACTTCATCGCATGACACTGGTACTGGTGGTGATGAATCCTCTTTGCAGAATCAAAAACCGTCGGA GCAGTCAACACGGTTGTAGCCGCTGCCACCAGTTATCACCTGTTGAATTGAATCTGTAGTGTAACAGTAGCCA GCATTTGTTAAAAATACATGGCATGTTTATTCACGCATGAATCTCTTGTATCT CTGCGTTGTCTTGCAACGGGAAACATGAAATGTTAAAA                                                   ]
[+] EMBL CF328034             [                    CACCACCTGCAAGCAACCAACCAACCACCACCCGCTCGCTCGCCGACCGCCACCGGCGACCCAATCACCCCTCACCGCCGCCGCCGGAGAAGGAGGAGGAGGGAGGGAGCAGCCGGCAGCGGGGAGGGGGCGCGCTGCGCCGTTG ATGAGATGAAGGAGGTGGTGCTCCACGTGTACGACGTGACGAACAGCGACTCGGAGAAGACGAACAACACCATCCTCCAGATCAACCGCATCTTCAAGGACCGGATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGGTCTATGGCGAGGAGGAGTGGTCGTTCGGGTTCTGCGAGAACGGCAGCGGCGTCTTCAGC TGCCCCATCGGGAAGAACCCCATGTACACCTACCGCGAGTGCATCGTCCTCGGGGAGACCGAGTGCTCCATCGCCACCGTGAACCGGATCCTGCGGGAGCTCAGTCGCGAGTGGCCGGGACACTCCTACGACCTCCTCTCCAGGAACTGCAACCACTTCTGCGACGTGCTCTGCGAGGGGCTCGCCGT CCCCAAGCTCCCAGGCTGGGTTAATCGTTTTGCCAATGCTGGTGATACCGCTGTGGTAGTTGCTGAGAACACAGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CF293655             [                    CACCACCTGCAAGCAACCAACCAACCACCACCCGCTCGCTCGCCGACCGCCACCGGCGACCCAATCACCCCTCGCCGCCGCCGCCGGAGAAGGAGGAGGAGGGAGGGAGCAGCCGGCAGCGGGGAGGGGGCGCGCTGCGCCGTTG ATGAGATGAAGGAGGTGGTGCTCCACGTGTACGACGTGACGAACAGCGACTCGGAGAAGACGAACAACACCATCCTCCAGATCAACCGCATCTTCAAGGACCGGATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGGTCTATGGCGAGGAGGAGTGGTCGTTCGGGTTCTGCGAGAACGGCAGCGGCGTCTTCAGC TGCCCCATCGGGAAGAACCCCATGTACACCTACCGCGAGTGCATCGTCCTCGGGGAGACCGAGTGCTCCATCGCCACCGTGAACCGGATCCTGCGGGAGCTCAGCCGCGAGTGGCCGGGACACTCCTACGACCTCCTCTCCAGGAACTGCAACCACTTCTGCGACGTGCTCTGCGAGAGGCTCGCCGT CCCCAAGCTCCCAGGCTGGGTTAATCGTTTTGCCAATGCTGGTGATACCGCTGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CF333145             [                            GCAAGCAACCAACCAACCACCACCCGCTCGCTCGCCGACCGCCACCGGCGACCCAATCACCCCTCGCCGCCGCCGCCGGAGAAGGAGGAGGAGGGAGGGAGCAGCCGGCAGCGGGGAGGGGGCGCGCTGCGCCGTTG ATGAGATGAAGGAGGTGGTGCTCCACGTGTACGACGTGACGAACAGCGACTCGGAGAAGACGAACAACACCATCCTCCAGATCAACCGCATCTTCAAGGACCGGATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGGTCTATGGCGAGGAGGAGTGGTCGTTCGGGTTCTGCGAGAACGGCAGCGGCGTCTTCAGC TGCCCCATCGGGAAGAACCCCATGTACACCTACCGCGAGTGCATCGTCCTCGGGGAGACCGAGTGCTCCATCGCCACCGTGAACCGGATCCTGCGGGAGCTCAGCCGCGAGTGGCCGGGACACTCCTACGACCTCCTCTCCAGGAACTGCAACCACTTCTGCGACGTGCTCTGCGAGAGGCTCGCCGT CCCCAAGCTCCCAGGCTGGGTTAATCGTTTTGCCAATGCTGGTGA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BE040756             [                                 gggCCAACCAACCACCACCCGCTCGCTCGCCGACCGCCACCGGCGACCCAATCACCCCTCGCCGCCGCCGCCGGAGAAGGAGGAGGAGGGAGGGAGCAGCCGGCAGCGGGGAGGGGGCGCGCTGCGCCGTTG ATGAGATGAAGGAGGTGGTGCTCCACGTGTACGACGTGACGAACAGCGACTCGGAGAAGACGAACAACACCATCCTCCAGATCAACCGCATCTTCAAGGACCGGATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGGTCTATGGCGAGGAGGAGTGGTCGTTCGGGTTCTGCGAGAACGGCAGCGGCGTCTTCAGC TGCCCCATCGGGAAGAACCCCATGTACACCTACCGCGAGTGCATCGTCCTCGGGGAGACCGAGTGCTCCATCGCCACCGTGAACCGGATCCTGCGGGAGCTCATCCGCGAGTGGCCGGGACACTTCTACGACCTCCTTTTCAGGAACTG AACCACTT TGGGACGTGCTCTGCGAGAGGCTCGCCGT CCCCAAGCT CCAGGCTGGGTTAATCGTTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL C27782               [                                                              CCGACCGCCACC GNNACCCAATCACCCCTCGCCGCCGCCGCCGGAGAAGGAGGAGGAGGGAGGGAGCAGCCGGCAGCGGGGAGGGGGCGCGCTGC CGTTTGAATGAGATGAAGGAGGTGGTGCTCCACGTGTACNACGTGACGAACAGCGACTCGGAGAAGACGAACAACACCATCCTCCAGATCAACCGCATCTTCAAGGACCGGNTCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGGTCTATGGCGAGGAGGAGTGGTCGTTCGGGTTCTGCGAGAACGGCAGCGGCGTCTTCANCTTGCCCCATCGGGAAGAACCCCATGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU174541             [                                                                                                                                                                                                             CGAACAGCGACTCGGAGAAGACGAACAACACCATCCTCCAGATCAACCGCATCTTCAAGGACCGGATCGGCCTCGGCGGCATCTTCCACAGCGCCGTCCAGGTCTATGGCGAGGAGGAGTGGTCGTTCGGGTTCTGCGAGAACGGCAGCGGCGTCTTCAGC TGCCCCATCGGGAAGAACCCCATGTACACCTACCGCGAGTGCATCGTCCTCGGGGAGACCGAGTGCTCCATCGCCACCGTGAACCGGATCCTGCGGGAGCTCAGCCGCGAGTGGCCGGGACACTCCTACGACCTCCTCTCCAGGAACTGCAACCACTTCTGCGACGTGCTCTGCGAGAGGCTCGCCGT CCCCAAGCTCCCAGGCTGGGTTAATCGTTTTGCCAATGCTGGTGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[-] EMBL CB679226             [                                                                                                                                                                                                                                                                                                                                                                                                    ATGTACACTTACCGCGAGTGCATCGTCTTCGGGGAGACCGAGTGCTCCATCGCCACCGTGAACCGGATCTTGCGGGAGCTCAGCCGCGAGTGGCCGGGACACTCCTACGACCTCCTCTCCAGGAACTGCAACCACTTCTGCGACGTGTTTTGCGAGAGGCTCGCCGT CCCCAAGCTCCCAGGCTGGGTTAATCGTTTTGCCAATGCTGGTGATACCGCTGTGGTAGTTGCTGAGAACACAGCAGTTAAGT TCAGACAGGCTAAAACAGAAA TAGT CAATGCCAGTAGAGTAGCATACAGATTTATGGCAGGCCTGGCATCGAAAAATCAAAA CCCACAACCAGAGTCCCCAAGTAACCAAAGCAGAAATGGCCCAACTTTCCAGGGGACTTGGTTCAAGAACATCATTTCGAATGGCGCAAAGCCTTCCTCAAGGGAATCAATTTCATCGCATGACACTGGTACTGGTGGTGATGAATCCTCTTTGCAGAATCAAAAACCGTCGGA GCAGTCAACACGGTTGTAGCCGCTGCCACCAGTTATCACCTGTTGAATTGAATTTGTAGTGTAACAGTAGCCA GCATTTGTTAAAAATACATGGCATGTTTATTCACGCATGAATCTCTTGTATTTAATGGGTTGTCTTGCAACGGGAACCA                                                                ]
[+] EMBL AU082300             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CTCTGCGANAGGCTCGCCGT CCCCAAGCTCCCAGGCTGGGTTAATCGTTTTGCCAATGCTGGTGATACCGCTGTGGTAGTTGCTGAGAACNCAGCAGTTAAGT TCAGACAGGCTAAAACAGAAA TAGT CAATGCCAGTAGAGTAGCATACAGATTTATGGCAGGCCTGGCATCGAAAAATCAAAA CCCACAACCAGAGTCCCCAAGTAACCAAAGCAGAAATGGCCCAACTTTCCAGGGGACTTGGTTCAAGAACATCATTTCGAATGGCGCAAAGCCTTCCTCAAGCGAATCAACTTCATCGCATGACACTGGTACTGGTGGTGATGAATCCTCTTTGCAGAATCAAAAACCGTCGGA GCAGTCAACACGGTTGTAGCCGCTGCCACCAGTTATCACCTGTTGAATTGAATCTGTAGTGTAACAGTAGCCA GCATTTGTTAAAAATACATGGCATGTTTATTCACGCATGAATCTCTTGTATCT CTGCGTTGTCTTGCAACGGGAAACATGAAATGTTAAAACACGTCATCCAAAGCTTGACAGTTTAAAAAAAA                  ]
[-] EMBL CF328035             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         CTGCGAGGGGCTCGCCGT CCCCAAGCTCCCAGGCTGGGTTAATCGTTTTGCCAATGCTGGTGATACCGCTGTGGTAGTTGCTGAGAACACAGCAGTTAAGT TCAGACAGGCTAAAACAGAAA TAGT CAATGCCAGTAGAGTAGCATACAGATTTATGGCAGGCCTGGCATCGAAAAATCAAAA CCCACAACCAGAGTCCCCAAGTAACCAAAGCAGAAATGGCCCAACTTTCCAGGGGACTTGGTTCAAGAACATCATTTCGAATGGCGCAAAGCCTTCCTCAAGCGAATCAACTTCATCGCATGACACTGGTACTGGTGGTGATGAATCCTCTTTGCAGAATCAAAAACCGTCGGA GCAGTCAACACGGTTGTAGCCGCTGCCACCAGTTATCACCTGTTGAATTGAATCTGTAGTGTAACAGTAGCCA GCATTTGTTAAAAATACATGGCATGTTTATTCACGCATGAATCTCTTGTATCT CTGCGTTGTCTTGCAACGGGAAACATGAAATGTTAAAACACGTCATCCAAAGCTTGACAGTTTTGTGGATCTTTTCTGTCACTCAAAAA]
[-] EMBL CF333144             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CGCCGTCCCCCAAGCTCCCAGGCTGGGTTAATCGTTTTGCCAATGCTGGTGATACCGCTGTGGTAGTTGCTGAGAACACAGCAGTTAAGT TCAGACAGGCTAAAACAGAAANTAGT CAATGCCAGTAGAGTAGCATACAGATTTATGGCAGGCCTGGCATCGAAAAATCAAAACCCCACAACCAGAGTCCCCAAGTAACCAAAGCTGAAATGGCCCAACTTTCCAGGGGACTTGGTTCAAGAACATCATTTCGAATGGCGCAAAGCCTTCCTCAAGCGAATCAACTTCATCGCATGACACTGGTACTGGTGGTGATGAATCCTCTTTGCAGAATCAAAAACCGTCGGA GCAGTCAACACGGTTGTAGCCGCTGCCACCAGTTATCACCTGTTGAATTGAATCTGTAGTGTAACAGTAGCCA GCATTTGTTAAAAATACATGGCATGTTTATTCACGCATGAATCTCTTGTATCT CTGCGTTGTCTTGCAACGGGAAACATGAAATGTTAAAACACGTCATCCAAAGCTTGACAGTTTAAAAAAA                   ]
[-] EMBL CF333954             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       CAGGCTGGGTTAATCGTTTTGCCAATGCTGGTGATACCGCTGTGGTAGTTGCTGAGAACACAGCAGTTAAGT TCAGACAGGCTAAAACAGAAA TAGT CAATGCCAGTAGAGTAGCATACAGATTTATGGCAGGCCTGGCATCGAAAAATCAAAA CCCACAACCAGAGTCCCCAAGTAACCAAAGCAGAAATGGCCCAACTTTCCAGGGGACTTGGTTCAAGAACATCATTTCGAATGGCGCAAAGCCTTCCTCAAGCGAATCAACTTCATCGCATGACACTGGTACTGGTGGTGATGAATCCTCTTTGCAGAATCAAAAACCGTCGGA GCAGTCAACACGGTTGTAGCCGCTGCCACCAGTTATCACCTGTTGAATTGAATCTGTAGTGTAACAGTAGCCA GCATTTGTTAAAAATACATGGCATGTTTATTCACGCATGAATCTCTTGTATCT CTGCGTTGTCTTGCAACGGGAAACATGAAATGTTAGAACACGTCATCCAAAaaa                                   ]
[-] EMBL CF334367             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GTTAATCGTTTTGCCAATGCTGGTGATACCGCTGTGGTAGTTGCTGAGAACACAGCAGTTAAGTNTCAGACAGGCTAAAACAGAAA TAGTNCAATGCCAGTAGAGTAGCATACAGATTTATGGCAGGCCTGGCATCGAAAAATCAAAA CCCACAACCAGAGTCCCCAAGTAACCAAAGCAGAAATGGCCCAACTTTCCAGGGGACTTGGTTCAAGAACATCATTTCGAATGGCGCAAAGCCTTCCTCAAGCGAATCAACTTCATCGCATGACACTGGTACTGGTGGTGATGAATCCTCTTTGCAGAATCAAAAACTGTCGGA GCAGTCAACACGGTTGTAGCCGCTGCCACCAGTTATCACCTGTTGAATTGAATCTGTAGTGTAACAGTAGCCA GCATTTGTTAAAAATACATGGCATGTTTATTCACGCATGAATCTCTTGTATCT CTGCGTTGTCTTGCAACGGGAAACATGAAATGTTAAAACACGTCATCCAAAGCTTGACAGTTTAAAAAA                    ]
[-] EMBL CF293656             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ATCGTTTTGCCAATGCTGGTGATACCGCTGTGGTAGTTGCTGAGAACACAGCAGTTAAGT TCAGACAGGCTAAAACAGAAA TAGT CAATGCCAGTAGAGTAGCATACAGATTTATGGCAGGCCTGGCATCGAAAAATCAAAA CCCACAACCAGAGTCCCCAAGTAACCAAAGCAGAAATGGCCCAACTTTCCAGGGGACTTGGTTCAAGAACATCATTTCGAATGGCGCAAGGCCTTCCTCAAGCGAATCAACTTCATCGCATGACACTGGTACTGGTGGTGATGAATCCTCTTTGCAGAATCAAAAACCGTCGGA GCAGTCAACACGGTTGTAGCCGCTGCCACCAGTTATCACCTGTTGAATTGAATCTGTAGTGTAACAGTAGCCA GCATTTGTTAAAAATACATGGCATGTTTATTCACGCATGAATCTCTTGTATCT CTGCGTTGTCTTGCAACGGGAAACATGAAATGTTAAAACACGTCATCCAAAGCTTGACAGTTTAAAAAA                    ]
[+] EMBL BM419735             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       TTTCCCCAATGCTGGTGATACCGCTGTGG AGTTGCTGAGAACACA CAGTTAAGT TCAGACAGGCTAAAACAGAAA TAGT CAATGCCAGTAGAGTAGCATACAGATTTATGGCAGGCCTGGCATCGAAAAATC AAA CCCACAACCAGAGTCCCCAAGTAACC AAGCAGAAATGGCCCAACTTTCCAGGGGACTTGGTTCAAGAACATCATTTCGAATGGCGCAAAGCCTTCCTCAAGCGAATCAACTTCATCGCATGACACTGGTACTGGTGGTGATGAATCCTCTTTGCAGAATCAAAAACCGTCGGANNCAGTCAACACGGTTGTA CCGCTGCCACCAGTTATCACCTGTTGAATTGAATCTGTAGTGTAACAGTAGCCACGCATTTGTTAAAAATACANGGCATGTTTATTCACGCATGAATCTCTGGTATCT CTGCGTTGTCTTGCAACGGGAAACATGAAATGTTAAAACACGTCATCCAAAGCTNGACAaaa                           ]




>consensus_15317#0
GAGTAGAAAGTTACCACCACCACCACCTGCAAGCAACCAACCAACCACCACCCGCTCGCT
CGCCGACCGCCACCGGCGACCCAATCACCCCTCGCCGCCGCCGCCGGAGAAGGAGGAGGA
GGGAGGGAGCAGCCGGCAGCGGGGAGGGGGCGCGCTGCGCCGTTGATGAGATGAAGGAGG
TGGTGCTCCACGTGTACGACGTGACGAACAGCGACTCGGAGAAGACGAACAACACCATCC
TCCAGATCAACCGCATCTTCAAGGACCGGATCGGCCTCGGCGGCATCTTCCACAGCGCCG
TCCAGGTCTATGGCGAGGAGGAGTGGTCGTTCGGGTTCTGCGAGAACGGCAGCGGCGTCT
TCAGCTGCCCCATCGGGAAGAACCCCATGTACACCTACCGCGAGTGCATCGTCCTCGGGG
AGACCGAGTGCTCCATCGCCACCGTGAACCGGATCCTGCGGGAGCTCAGCCGCGAGTGGC
CGGGACACTCCTACGACCTCCTCTCCAGGAACTGCAACCACTTCTGCGACGTGCTCTGCG
AGAGGCTCGCCGTCCCCAAGCTCCCAGGCTGGGTTAATCGTTTTGCCAATGCTGGTGATA
CCGCTGTGGTAGTTGCTGAGAACACAGCAGTTAAGTTCAGACAGGCTAAAACAGAAATAG
TCAATGCCAGTAGAGTAGCATACAGATTTATGGCAGGCCTGGCATCGAAAAATCAAAACC
CACAACCAGAGTCCCCAAGTAACCAAAGCAGAAATGGCCCAACTTTCCAGGGGACTTGGT
TCAAGAACATCATTTCGAATGGCGCAAAGCCTTCCTCAAGCGAATCAACTTCATCGCATG
ACACTGGTACTGGTGGTGATGAATCCTCTTTGCAGAATCAAAAACCGTCGGAGCAGTCAA
CACGGTTGTAGCCGCTGCCACCAGTTATCACCTGTTGAATTGAATCTGTAGTGTAACAGT
AGCCAGCATTTGTTAAAAATACATGGCATGTTTATTCACGCATGAATCTCTTGTATCTCT
GCGTTGTCTTGCAACGGGAAACATGAAATGTTAAAACACGTCATCCAAAGCTTGACAGTT
TAAAAAAAATTTTCTGTCACTCAAAAA

consensusID : consensus_15317#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 589
fasta sequence

                              [CTTCTCCAGGNAACTGCAACCCATTTCTGCGACGTGCTCTGCGAGAGGCTCGCCGTCCCCAAGCTCCCAGGCTGGGTTAATCGTTTTGCCAATGCTGGTGATACCGCTGTGGTAGTTGCTGAGAACNCAGCAGTTAAGTTCAGACAGGCTAAAACAGAAATAGTCAATGCCAGTAGAGTAGCATACAGATTTATGGCAGGCCTGGNATCGAAAAATCAAAACCCACAACCAGAGTCCCCAAGTAACCAAAGCAGAAATGGCCCAACTTTCCAGGGGACTTGGTTCAAGAACATCATTTCGAATGGCGCAAAGCCTTCCTCAAGCGAATCAACTTCATCGCATGACACTGGTACTGGTGGTGATGAATCCTCTTTGCAGAATCAAAAACCGTCGGAGCNGTCAACACGGTTGTAGCCGCTGCCACCAGTTATCACCTGTTGAATTGAATCTGTAGTGTAACAGTAGCCAGCATTTGTTAAAAATACATGGCATGTTTATTCACGNATGAATCTCTTGTATCTCTGCGTTGTCTTGCAACGGGAAACATGAAATGTTAAAACACGTNATCCAAAAAAAAAAAAAAAAAAAA]

[+] EMBL C98299               [CTTCTCCAGGNAACTGCAACCCATTTCTGCGACGTGCTCTGCGAGAGGCTCGCCGTCCCCAAGCTCCCAGGCTGGGTTAATCGTTTTGCCAATGCTGGTGATACCGCTGTGGTAGTTGCTGAGAACNCAGCAGTTAAGTTCAGACAGGCTAAAACAGAAATAGTCAATGCCAGTAGAGTAGCATACAGATTTATGGCAGGCCTGGNATCGAAAAATCAAAACCCACAACCAGAGTCCCCAAGTAACCAAAGCAGAAATGGCCCAACTTTCCAGGGGACTTGGTTCAAGAACATCATTTCGAATGGCGCAAAGCCTTCCTCAAGCGAATCAACTTCATCGCATGACACTGGTACTGGTGGTGATGAATCCTCTTTGCAGAATCAAAAACCGTCGGAGCNGTCAACACGGTTGTAGCCGCTGCCACCAGTTATCACCTGTTGAATTGAATCTGTAGTGTAACAGTAGCCAGCATTTGTTAAAAATACATGGCATGTTTATTCACGNATGAATCTCTTGTATCTCTGCGTTGTCTTGCAACGGGAAACATGAAATGTTAAAACACGTNATCCAAAAAAAAAAAAAAAAAAAA]




>consensus_15317#1
CTTCTCCAGGNAACTGCAACCCATTTCTGCGACGTGCTCTGCGAGAGGCTCGCCGTCCCC
AAGCTCCCAGGCTGGGTTAATCGTTTTGCCAATGCTGGTGATACCGCTGTGGTAGTTGCT
GAGAACNCAGCAGTTAAGTTCAGACAGGCTAAAACAGAAATAGTCAATGCCAGTAGAGTA
GCATACAGATTTATGGCAGGCCTGGNATCGAAAAATCAAAACCCACAACCAGAGTCCCCA
AGTAACCAAAGCAGAAATGGCCCAACTTTCCAGGGGACTTGGTTCAAGAACATCATTTCG
AATGGCGCAAAGCCTTCCTCAAGCGAATCAACTTCATCGCATGACACTGGTACTGGTGGT
GATGAATCCTCTTTGCAGAATCAAAAACCGTCGGAGCNGTCAACACGGTTGTAGCCGCTG
CCACCAGTTATCACCTGTTGAATTGAATCTGTAGTGTAACAGTAGCCAGCATTTGTTAAA
AATACATGGCATGTTTATTCACGNATGAATCTCTTGTATCTCTGCGTTGTCTTGCAACGG
GAAACATGAAATGTTAAAACACGTNATCCAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_15317#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 463
fasta sequence

                              [TTCAGACAGGCTAAAACAGAAATAGTCAATGCCAGTAGAGTAGCATACAGATTTATGGCAGGCCTGGCATCGAAAAATCAAAACCCACAACCAGAGTCCCCAAGTAACCAAAGCAGAAATGGCCCAACTTTCCAGGGGACTTGGTTCAAGAACATCATTTCGAATGGCGCAAAGCCTTCCTCAAGCGAATCAACTTCATCGCATGACACTGGTACTGGTGGTGATGAATCCTCTTTGCAGAATCAAAAACCGTCGGAGCAGTCAACACGGTTGTAGCCGCTGCCACCAGTTATCACCTGTTGAATTGAATCTGTAGTGTAACAGTAGCCAGCATTTGTTAAAAATACATGGCATGTTTATTCACGCATGAATCTCTTGTATCTCTGCGTTGTCTTGCAACGGGAAACATGAAATGTTAAAACACGTCATCCAAAGCTTGACAGTTTTGTGGTTCAAAAAAAAA]

[+] EMBL AU174540             [TTCAGACAGGCTAAAACAGAAATAGTCAATGCCAGTAGAGTAGCATACAGATTTATGGCAGGCCTGGCATCGAAAAATCAAAACCCACAACCAGAGTCCCCAAGTAACCAAAGCAGAAATGGCCCAACTTTCCAGGGGACTTGGTTCAAGAACATCATTTCGAATGGCGCAAAGCCTTCCTCAAGCGAATCAACTTCATCGCATGACACTGGTACTGGTGGTGATGAATCCTCTTTGCAGAATCAAAAACCGTCGGAGCAGTCAACACGGTTGTAGCCGCTGCCACCAGTTATCACCTGTTGAATTGAATCTGTAGTGTAACAGTAGCCAGCATTTGTTAAAAATACATGGCATGTTTATTCACGCATGAATCTCTTGTATCTCTGCGTTGTCTTGCAACGGGAAACATGAAATGTTAAAACACGTCATCCAAAGCTTGACAGTTTTGTGGTTCAAAAAAAAA]




>consensus_15317#2
TTCAGACAGGCTAAAACAGAAATAGTCAATGCCAGTAGAGTAGCATACAGATTTATGGCA
GGCCTGGCATCGAAAAATCAAAACCCACAACCAGAGTCCCCAAGTAACCAAAGCAGAAAT
GGCCCAACTTTCCAGGGGACTTGGTTCAAGAACATCATTTCGAATGGCGCAAAGCCTTCC
TCAAGCGAATCAACTTCATCGCATGACACTGGTACTGGTGGTGATGAATCCTCTTTGCAG
AATCAAAAACCGTCGGAGCAGTCAACACGGTTGTAGCCGCTGCCACCAGTTATCACCTGT
TGAATTGAATCTGTAGTGTAACAGTAGCCAGCATTTGTTAAAAATACATGGCATGTTTAT
TCACGCATGAATCTCTTGTATCTCTGCGTTGTCTTGCAACGGGAAACATGAAATGTTAAA
ACACGTCATCCAAAGCTTGACAGTTTTGTGGTTCAAAAAAAAA

consensusID : consensus_15317#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 378
fasta sequence

                              [CCAACCAACCACCACCCGCTCGCTCGCCGACCGCCACCGGGACCCAATCACCCCTCGCCGCCGCCGCCGGAGAAGGAGGAGGAGGGAGGGAGCAGCCGGCAGCGGGGAGGGGGCGCGCTGCGCGTNTGATGAGATGAAGGAGGTGGTGCTCCACGTGTACGACGTGACGAACAGCGACTCGGAGAAGACGAACAACACCATCCTCCAGATCAACCGCATCTTCAAGGACCGGATCGGNCTTGGCGGCATCTTNCANAGAGNCGTCCAGGTCTATGGCGAGGAGGAGTGGTCGTTCGGGGTTCTGCGAAAACGGCAGCAGNGTCTTNAGNTTGCCCATNGGGAAGAACCCATGTACAACTNCCGAGGGTTGATTGTNCT]

[+] EMBL OS1487A              [CCAACCAACCACCACCCGCTCGCTCGCCGACCGCCACCGGGACCCAATCACCCCTCGCCGCCGCCGCCGGAGAAGGAGGAGGAGGGAGGGAGCAGCCGGCAGCGGGGAGGGGGCGCGCTGCGCGTNTGATGAGATGAAGGAGGTGGTGCTCCACGTGTACGACGTGACGAACAGCGACTCGGAGAAGACGAACAACACCATCCTCCAGATCAACCGCATCTTCAAGGACCGGATCGGNCTTGGCGGCATCTTNCANAGAGNCGTCCAGGTCTATGGCGAGGAGGAGTGGTCGTTCGGGGTTCTGCGAAAACGGCAGCAGNGTCTTNAGNTTGCCCATNGGGAAGAACCCATGTACAACTNCCGAGGGTTGATTGTNCT]
[+] EMBL OSS1421A             [              CCCGCTCGCTCGCCGACCGCCACCGGGACCCAATCACCCCTCGCCGCCGCCGCCGGAGAAGGAGGAGGAGGGAGGGAGCAGCCGGCAGCGGGGAGGGGGCGCGCTNCGCGTTTGATGAGATGAAGGAGGTGGTGCTCCACGTGTACNACGTGACGAACAGCGACTCGGAGAAGACGAACAACACCATCCTCCAGATCAA                                                                                                                                                                     ]




>consensus_15317#3
CCAACCAACCACCACCCGCTCGCTCGCCGACCGCCACCGGGACCCAATCACCCCTCGCCG
CCGCCGCCGGAGAAGGAGGAGGAGGGAGGGAGCAGCCGGCAGCGGGGAGGGGGCGCGCTG
CGCGTNTGATGAGATGAAGGAGGTGGTGCTCCACGTGTACGACGTGACGAACAGCGACTC
GGAGAAGACGAACAACACCATCCTCCAGATCAACCGCATCTTCAAGGACCGGATCGGNCT
TGGCGGCATCTTNCANAGAGNCGTCCAGGTCTATGGCGAGGAGGAGTGGTCGTTCGGGGT
TCTGCGAAAACGGCAGCAGNGTCTTNAGNTTGCCCATNGGGAAGAACCCATGTACAACTN
CCGAGGGTTGATTGTNCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15317#1      ------------------------------------------------------------
consensus_15317#2      ------------------------------------------------------------
consensus_15317#0      GAGTAGAAAGTTACCACCACCACCACCTGCAAGCAACCAACCAACCACCACCCGCTCGCT 60
consensus_15317#3      ------------------------------------------------------------
                                                                                   

consensus_15317#1      ------------------------------------------------------------
consensus_15317#2      ------------------------------------------------------------
consensus_15317#0      CGCCGACCGCCACCGGCGACCCAATCACCCCTCGCCGCCGCCGCCGGAGAAGGAGGAGGA 120
consensus_15317#3      ------------------------------------------------------------
                                                                                   

consensus_15317#1      ------------------------------------------------------------
consensus_15317#2      ------------------------------------------------------------
consensus_15317#0      GGGAGGGAGCAGCCGGCAGCGGGGAGGGGGCGCGCTGCGCCGTTGATGAGATGAAGGAGG 180
consensus_15317#3      ------------------------------------------------------------
                                                                                   

consensus_15317#1      ------------------------------------------------------------
consensus_15317#2      ------------------------------------------------------------
consensus_15317#0      TGGTGCTCCACGTGTACGACGTGACGAACAGCGACTCGGAGAAGACGAACAACACCATCC 240
consensus_15317#3      ------------------------------------------------------------
                                                                                   

consensus_15317#1      ------------------------------------------------------------
consensus_15317#2      ------------------------------------------------------------
consensus_15317#0      TCCAGATCAACCGCATCTTCAAGGACCGGATCGGCCTCGGCGGCATCTTCCACAGCGCCG 300
consensus_15317#3      ------------------------------------------------------------
                                                                                   

consensus_15317#1      ------------------------------------------------------------
consensus_15317#2      ------------------------------------------------------------
consensus_15317#0      TCCAGGTCTATGGCGAGGAGGAGTGGTCGTTCGGGTTCTGCGAGAACGGCAGCGGCGTCT 360
consensus_15317#3      ------------------------------------------------------------
                                                                                   

consensus_15317#1      ------------------------------------------------------------
consensus_15317#2      ------------------------------------------------------------
consensus_15317#0      TCAGCTGCCCCATCGGGAAGAACCCCATGTACACCTACCGCGAGTGCATCGTCCTCGGGG 420
consensus_15317#3      ------------------------------------------------------------
                                                                                   

consensus_15317#1      ------------------------------------------------------------
consensus_15317#2      ------------------------------------------------------------
consensus_15317#0      AGACCGAGTGCTCCATCGCCACCGTGAACCGGATCCTGCGGGAGCTCAGCCGCGAGTGGC 480
consensus_15317#3      ------------------------------------------------------------
                                                                                   

consensus_15317#1      ------------------CTTCTCCAGGNAACTGCAACCCATTTCTGCGACGTGCTCTGC 42
consensus_15317#2      ------------------------------------------------------------
consensus_15317#0      CGGGACACTCCTACGACCTCCTCTCCAGGAACTGCAACC-ACTTCTGCGACGTGCTCTGC 539
consensus_15317#3      ------------------------------------------------------------
                                                                                   

consensus_15317#1      GAGAGGCTCGCCGTCCCCAAGCTCCCAGGCTGGGTTAATCGTTTTGCCAATGCTGGTGAT 102
consensus_15317#2      ------------------------------------------------------------
consensus_15317#0      GAGAGGCTCGCCGTCCCCAAGCTCCCAGGCTGGGTTAATCGTTTTGCCAATGCTGGTGAT 599
consensus_15317#3      ------------------------------------------------------------
                                                                                   

consensus_15317#1      ACCGCTGTGGTAGTTGCTGAGAACNCAGCAGTTAAGTTCAGACAGGCTAAAACAGAAATA 162
consensus_15317#2      ------------------------------------TTCAGACAGGCTAAAACAGAAATA 24
consensus_15317#0      ACCGCTGTGGTAGTTGCTGAGAACACAGCAGTTAAGTTCAGACAGGCTAAAACAGAAATA 659
consensus_15317#3      ------------------------------------------------------------
                                                                                   

consensus_15317#1      GTCAATGCCAGTAGAGTAGCATACAGATTTATGGCAGGCCTGGNATCGAAAAATCAAAAC 222
consensus_15317#2      GTCAATGCCAGTAGAGTAGCATACAGATTTATGGCAGGCCTGGCATCGAAAAATCAAAAC 84
consensus_15317#0      GTCAATGCCAGTAGAGTAGCATACAGATTTATGGCAGGCCTGGCATCGAAAAATCAAAAC 719
consensus_15317#3      -------CCAACCAACCACCAC-CCGCTCGCTCGCCGACC-GCCACCGGGACCCAATCAC 51
                              ***    *  * **  * * *   * ** * ** *  * **  *    *  **

consensus_15317#1      CCACAACCAGAGTCCCCAAGTAACCAA-AGCAGAAATGGCCCAACTTTCCA-GGGGACTT 280
consensus_15317#2      CCACAACCAGAGTCCCCAAGTAACCAA-AGCAGAAATGGCCCAACTTTCCA-GGGGACTT 142
consensus_15317#0      CCACAACCAGAGTCCCCAAGTAACCAA-AGCAGAAATGGCCCAACTTTCCA-GGGGACTT 777
consensus_15317#3      CCCTCGCCGCCGCCGCCGGAGAAGGAGGAGGAGGGAGGGAGCAGCCGGCAGCGGGGAGGG 111
                       **    **   * * **    **  *  ** **  * **  ** *   *   *****   

consensus_15317#1      GGTTCAA-GAACATCATTTCGAATGGCGCAAAGCCTTCCTCAAGCGAATCAACTTCATCG 339
consensus_15317#2      GGTTCAA-GAACATCATTTCGAATGGCGCAAAGCCTTCCTCAAGCGAATCAACTTCATCG 201
consensus_15317#0      GGTTCAA-GAACATCATTTCGAATGGCGCAAAGCCTTCCTCAAGCGAATCAACTTCATCG 836
consensus_15317#3      GGCGCGCTGCGCGTNTGATGAGATGAAGGAGGTGGTGCTCCACGTGTA-CGACGTGACGA 170
                       **  *   *  * *    *   ***  * *     * *  ** * * * * ** * *   

consensus_15317#1      CATGACACTGGTACTGGTGGTGATGAATCCTCTTTGCAGAATCAAAAACCGTCGGAGCNG 399
consensus_15317#2      CATGACACTGGTACTGGTGGTGATGAATCCTCTTTGCAGAATCAAAAACCGTCGGAGCAG 261
consensus_15317#0      CATGACACTGGTACTGGTGGTGATGAATCCTCTTTGCAGAATCAAAAACCGTCGGAGCAG 896
consensus_15317#3      ACAGCGACTCGGA--GAAGACGAACAACACCATCCTCCAGATCAACCGCATCTTCAAGGA 228
                          *  *** * *  *  *  **  **  *  *   *   *****   *      *    

consensus_15317#1      TCAACACGGTTGTAGCCGCTGCCACCAGTTATCACCTGTTGAATTGAATCTGTAGTGTAA 459
consensus_15317#2      TCAACACGGTTGTAGCCGCTGCCACCAGTTATCACCTGTTGAATTGAATCTGTAGTGTAA 321
consensus_15317#0      TCAACACGGTTGTAGCCGCTGCCACCAGTTATCACCTGTTGAATTGAATCTGTAGTGTAA 956
consensus_15317#3      CCGGATCGGNCTTGGCGGCATCTTNCAN--AGAGNCGTCCAGGTCTATGGCGAGGAGGAG 286
                        *    ***   * ** **  *   **   *    *       *  *    *  * * * 

consensus_15317#1      CAGTAGCCAGCATTTGTTAAAAATACATGGCATGTTTATTCACGNATGAATCTCTTGTAT 519
consensus_15317#2      CAGTAGCCAGCATTTGTTAAAAATACATGGCATGTTTATTCACGCATGAATCTCTTGTAT 381
consensus_15317#0      CAGTAGCCAGCATTTGTTAAAAATACATGGCATGTTTATTCACGCATGAATCTCTTGTAT 1016
consensus_15317#3      TGGTCGTTCGGGGTTCTGCGAAAACGGCAGCAGNGTCTTNAGNTTGCCCATNGGGAAGAA 346
                         ** *   *   ** *   ***      ***   *  *          **       * 

consensus_15317#1      CTCTGCGTTGTCTTGCAACGGGAAACATGAAATGTTAAAACACGTNATCCAAAAAAAAAA 579
consensus_15317#2      CTCTGCGTTGTCTTGCAACGGGAAACATGAAATGTTAAAACACGTCATCCAAAGCTTGAC 441
consensus_15317#0      CTCTGCGTTGTCTTGCAACGGGAAACATGAAATGTTAAAACACGTCATCCAAAGCTTGAC 1076
consensus_15317#3      C-CCATGTACAACTNCCGAGGGTTGATTGTNCT--------------------------- 378
                       * *   **     * *   ***     **   *                           

consensus_15317#1      A------------AAAAAAAAA----------------- 589
consensus_15317#2      AGTTTTGTGGTTCAAAAAAAAA----------------- 463
consensus_15317#0      AGTTT--------AAAAAAAATTTTCTGTCACTCAAAAA 1107
consensus_15317#3      ---------------------------------------