These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15341#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 19 consensus length = 1872 fasta sequence [AAAAATTTGGGAGACCACCCACAAATCGCTCGTCGGCGAGCGAA-TCCAAACCAAATCCTTGTTCTAGTCTTGTATCACCCGCATCTGCGCGTCCCTCTGCGGCGGCGGCGGCGGCGACGGCGGCGATGGGGCTGGAGATGGAGGGGATGGCGGCGGCGATCGGCGTGTCGGTGCCCGTGCTCCGCTTCCTGCTCTGCTTCGCGGCCACCATCCCGACGGGCCTCATGTGGCGGGCGGTGCCCGGCGCCGCGGGGCGGCACCT-CTACGCGGGGCTCACCGGCGCCGCGC-TTTCCTACCTC-TCG-TTC-GGGGCCAC-ATCC-AACCTCCTCTTCGTCGTGCCCATGGCGTTCGGGTACCTCGCCATGCTCCTCTGCCGCCGGCTCGC-GGGGC-TCGTCACCTTCCTCGG-CGCCTTCGGCTTCCTCATCGCATGTCACATGTACTAC-ATGAGT-GGAGATGC-ATGGAAGGA-GGGTGGCATTGATGC-AACAGGTGCTTTAATGGTTTTAACATTGAAAATCATTTCATGTGCAATAAACTACAGTGACGGTATGTTGAAGGAAGAGGGTTTGCGTGATGCCCAGAAAAAGTATCGTTTGGCTAAACTTCCTTCTTTGATCGAATATTTTGGCTACTGCCTCTGCTGTGGCAGCCATTTTGCTGGGCCAGTATATGAGATGAAAGATTATCTTGAATATACTGAACGGAAAGGATTATGGGCCAGCCCAACTCCTTCACCACTATTGCCTACTTTGCGTGCTCTAGTTCAAGCTGGCGCATGTATGGGGTTATATTTGTATCTATCACCTCAATTTCCACTTTCACGGTTTAGCGAGCCCTTATATTATGAGTGGGGTTTCTGGCACCGGCTCTTCTATCAGTACATGTCAGGCTTTACTGCTCGTTGGAAATACTACTTTATATGGTCACTTTCAGAAGCTGCAATCATTATATCTGGTCTGGGTTTTAGCGGCTGGTCTGATTCATCTCCCCCGAAAGCCAAATGGGATCGTGCAAAAAATGTTGATGTTTTAGGTGTCGAATTAGCTACAAGTGCAGTTCAGTTGCCGCTTATGTGGAACATTCAAGTGAGCACATGGCTGCGATACTATGTTTATGAGAGGTTAGTTCAGAAAGGAAAGAAACCTGGTTTCCTCCAGTTGCTGGGTACACAGACAGTCAGTGCTGTCTGGCATGGTCTTTATCCCGGATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCAAAAGTCATATACAGATGGCAACAAGCAGTCAGC-AAT-CCAGTCTTCCACGCTATCCTGGTTTTTGTAAATTTTTCATACACCTTGATGGTCCTTAACTACTCATGTATTGGGTTCCAGGTACTGAGCTTCAAGGAAACCCTAGCATCCTACCAGAGCGTATATTATATCGGCACA-ATTGTTCCCATTGTAGTTGTCTTGCTGGGTTATGTTATCAAGCCAGCCAGGCCAGTGAAGCCAAAGGCTCGGAAGGCA-GAATGAGCAACAAGTTGACCTGGTCAAGTGGTCATTACATATAGGAGCGACGAAGAACATTT-AATGACGATAATGACGAACTAGTGTCCAGCTATTCTACTGTGGAATTTCGCAGGAGAATGTGATGACTCACCTCTTAAAGTTCTGAACTCCCTTGTGATTGATCAAACATTAAAACGTGGCACTCCCGTTGGATTTTTCTTCTATGTTATGACTACTACTACAACTACATAGGATATCGGCCTTGCGCCTTCGGTTGTTGAGTTCTCTTCTGACCGACTGTCATTCAAAGCGATGTATTTTTTATCACCTTCCCTGGCCTGGAGCCAAATGGAGGTGTGAATGGGCATCATTTCTTGGTTCAAAAAAAAGA] [+] EMBL CB633083 [AAAAATTTGGGAGACCACCCACAAATCGCTCGTCGGCGAGCGAA TCCAAACCAAATCCTTGTTCTAGTCTTGTATCACCCGCATCTGCGCGTCCCTCTGCGGCGGCGGCGGCGGCGACGGCGGCGATGGGGCTGGAGATGGAGGGGATGGCGGCGGCGATCGGCGTGTCGGTGCCCGTGCTCCGCTTCCTGCTCTGCTTCGCGGCCACCATCCCGACGGGCCTCATGTGGCGGGCGGTGCCCGGCGCCGCGGGGCGGCACCT CTACGCGGGGCTCACCGGCGCCGCGC TCTCCTACCTC TCG TTC GGGGCCAC ATCC AACCTCCTCTTCGTCGTGCCCATGGCGTTCGGGTACCTCGCCATGCTCCTCTGCCGCCGGCTCGC GGGGC TCGTCACCTTCCTCGG CGCCTTCGGCTTCCTCATCGCATGTCACATGTACTAC ATGAGT GGAGATGC ATGGAAGGA GGGTGGCATTGATGC AACAGGTGCTTTAATGGTTTTAACATTGAAAATCATTTCATGTGCAATAAACTACAGTGACGGTATGTTGAAGGAAGAGGGTTTGCGTGATGCCCAGAAAAAGTATCGTTTGGCTAAACTTCCTTCTTTGATCGAATATTTTGGCTACTGCCTCTGCTGTGGCAGCCATTTTGCTGGGCCAGTATATGAGATGAAAGATTATCTTGAATATACTGAACGGAAAGGATTATGGGCCAGCCCAACTCCTTCACCACTATTGCCTACTTTGCGTGCTCTAGTTCAAGCTGGCGCATGTATGGGGTTATATTTGTATCTATCACCTNCATT ] [+] EMBL CB621270 [ GGAGACCACCCACAAATCGCTCGTCGGCGAGCGAA TCCAAACCAAATCCTTGTTCTAGTCTTGTATCACCCGCATCTGCGCGTCCCTCTGCGGCGGCGGCGGCGGCGACGGCGGCGATGGGGCTGGAGATGGAGGGGATGGCGGCGGCGATCGGCGTGTCGGTGCCCGTGCTCCGCTTCCTGCTCTGCTTCGCGGCCACCATCCCGACGGGCCTCATGTGGCGGGCGGTGCCCGGCGCCGCGGGGCGGCACCT CTACGCGGGGCTCACCGGCGCCGCGC TCTCCTACCTC TCG TTC GGGGCCAC ATCC AACCTCCTCTTCGTCGTGCCCATGGCGTTCGGGTACCTCGCCATGCTCCTCTGCCGCCGGCTCGC GGGGC TCGTCACCTTCCTCGG CGCCTTCGGCTTCCTCATCGCATGTCACATGTACTAC ATGAGT GGAGATGC ATGGAAGGA GGGTGGCATTGATGC AACAGGTGCTTTAATGGTTTTAACATTGAAAATCATTTCATGTGCAATAAACTACAGTGACGGTATGTTGAAGGAAGAGGGTTTGCGTGATGCCCAGAAAAAGTATCGTTTGGCTAAACTTCCTTCTTTGATCGAATATTTTGGCTACTGCCTCTGCTGTGGCAGCCATTTTGCTGGGCCAGTATATGAGATGAAAGATTATCTTGAATATACTGAACGGAAAGGATTATGGGCCAGCCCAACTCCTTCACCACTATTGCCTACTTTGCGTGCTCTAGTTCAAGCTGGCGCATGTATGGGGTTATATTTGTATCTATCACCTCA ] [+] EMBL OSS11682A [ GAGACCACCCACAAATCGCTCGTCGGCGAGCGAA TCCAAACCAAATCCTTGTTCTAGTCTTGTATCACCCGCATCTGCGCGTCCCTCTGCGGCGGCGGCGGCGGCGACGGCGGCGATGGGGCTGGAGATGGAGGGGATGGCGGCGGCGATCGGCGTGTCGGTGCCCGTGCTCCGCTTCCTGCTCTGCTTCGCGGNCACCATCCCGACGGGCCTCATGTGGCGGGCGGTGCCCGGCGCCGCGGGGNGGNACCTNTTACGCGGGGCTCAACGGCGCCGNGCTTTTCCTACCTCTTCGTTTCGGGGGCCACAATCCAAACCTnac ] [+] EMBL OSS11617A [ GAGACCACCCACAAATCGCTCGTCGGCGAGCGAATTCCAAACCAAATCCTTGTTCTAGTCTTGTATCACCCGCATCTGCGCGTCCCTCTGCGGCGGCGGCGGCGGCGACGGCGGCGATGGGGNTGGAGATGGAGGGGATGGCGGCGGCGATCGGCGTGTCGGTGCCCGTGCTCCGCTTCCTGCTCTGCTTCGCGGCCACCATCCCGACGGGCCTCATGTGGCGGGCGGTG CCGGCGCCGCGGGG GGNACCT CTACGCGGGG TNAACGGCGCCGNG TTTCCTANCTC TCG TTC GGGG CAN ATTC AANCTTCTCTTCGTCGT NCCAT GNGTTCGGGTACtng ] [+] EMBL AK073916 [ ACCCACAAATCGCTCGTCGGCGAGCGAA TCCAAACCAAATCCTTGTTCTAGTCTTGTATCACCCGCATCTGCGCGTCCCTCTGCGGCGGCGGCGGCGGCGACGGCGGCGATGGGGCTGGAGAT GAGGGGATGGCGGCGGCGATCGGCGTGTCGGTGCCCGTGCTCCGCTTCCTGCTCTGCTTCGCGGCCACCATCCCGACGGGCCTCATGTGGCGGGCGGTGCCCGGCGCCGCGGGGCGGCACCT CTACGCGGGGCTCACCGGCGCCGCGC TTTCCTACCTC TCG TTC GGGGCCAC ATCC AACCTCCTCTTCGTCGTGCCCATGGCGTTCGGGTACCTCGCCATGCTCCTCTGCCGCCGGCTCGC GGGGC TCGTCACCTTCCTCGG CGCCTTCGGCTTCCTCATCGCATGTCACATGTACTAC ATGAGT GGAGATGC ATGGAAGGA GGGTGGCATTGATGC AGCAGGTGCTTTAATGGTTTTAACATTGAAAATCATTTCATGTGCAATAAACTACAGTGACGGTATGTTGAAGGAAGAGGGTTTGCGTGATGCCCAGAAAAAGTATCGTTTGGCTAAACTTCCTTCTTTGATCGAATATTTTGGCTACTGCCTCTGCTGCGGCAGCCATTTTGCTGGGCCAGTATATGAGATGAAAGATTATCTTGAATATACTGAACGGAAAGGATTATGGGCCAGCCCAACTCCTTCACCACTATTGCCTACTTTGCGTGCTCTAGTTCAAGCTGGCGCATGTATGGGGTTATATTTGTATCTATCACCTCAATTTCCACTTTCACGGTTTAGCGAGCCCTTATATTATGAGTGGGGTTTCTGGCACCGGCTCTTCTATCAGTACATGTCAGGCTTTACTGCTCGTTGGAAATACTACTTTATATGGTCACTTTCAGAAGCTGCAATCATTATATCTGGTCTGGGTTTTAGCGGCTGGTCTGATTCATCTCCCCCGAAAGCCAAATGGGATCGTGCAAAAAATGTTGATGTTTTAGGTGTCGAATTAGCTACAAGTGCAGTTCAGTTGCCGCTTATGTGGAACATTCAAGTGAGCACATGGCTGCGATACTATGTTTATGAGAGGTTAGTTCAGAAAGGAAAGAAACCTGGTTTCCTCCAGTTGCTGGGTACACAGACAGTCAGTGCTGTCTGGCATGGTCTTTATCCCGGATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCAAAAGTCATATACAGATGGCAACAAGCAGTCAGC AAT CCAGTCTTCCACGCTATCCTGGTTTTTGTAAATTTTTCATACACCTTGATGGTCCTTAACTACTCATGTATTGGGTTCCAGGTACTGAGCTTCAAGGAAACCCTAGCATCCTACCAGAGCGTATATTATATCGGCACA ATTGTTCCCATTGTAGTTGTCTTGCTGGGTTATGTTATCAAGCCAGCCAGGCCAGTGAAGCCAAAGGCTCGGAAGGCA GAATGAGCAACAAGTTGACCTGGTCAAGTGGTCATTACATATAGGAGCGACGAAGAACATTT AATGACGATAATGACGAACTAGTGTCCAGCTATTCTACTGTGGAATTTCGCAGGAGAATGTGATGACTCACCTCTTAAAGTTCTGAACTCCCTTGTGATTGATCAAACATTAAAACGTGGCACTCCCGTTGGATTTTTCTTCTATGTTATGACTACTACTACAACTACATAGGATATCGGCCTTGCGCCT ] [+] EMBL AU091652 [ AATCCTTGTNCTAGTCTTGTATCACCCGCATCTNCGCGTCCNTNTNCGGCGGCGGCGGCGGCGACGGCGGCGATGGGGCTGGAGATGGAGGGGATGGCGGCGGCGATCGGCGTGTCGGTGCCCGTGCTCCGCTTCCTGCTCTGCTTCGCGGCCACCATCCCGACGGGCCTCATGTGGCGGGCGGTGCCCGGCGCCGCGGGGCGGCACCT CTACGCGGGGCTCACCGGCGCCGCGC TTTCCTACCTC TCG TTC GGGGCCAC ATCC AACCTCCTCTTCGTCGTGCCCATGGCGTTCGGGTACCTCGCCATGCTCCTCTGCCGCCGGCTCGCGGGGGC TCGTNAACTTCCTCGGNGGCCTTCGGNTTCCTCATCGAATGTNACATGTACTACAATGAGTNGAAGATTCAATTGAAGGAGGGGTGGNATTGATGCAAACAGGTG ] [+] EMBL CB656427 [ CTGCGCGTCCCTCTGCGGCGGCGGCGGCGGCGACGGCGGCGATGGGGCTGGAGATGGAGGGGATGGCGGCGGCGATCGGCGTGTCGGTGCCCGTGCTCCGCTTCCTGCTCTGCTTCGCGGCCACCATCCCGACGGGCCTCATGTGGCGGGCGGTGCCCGGCGCCGCGGGGCGGCACCT CTACGCGGGGCTCACCGGCGCCGCGC TTTCCTACCTC TCG TTC GGGGCCAC ATCC AACCTCCTCTTCGTCGTGCCCATGGCGTTCGGGTACCTCGCCATGCTCCTCTGCCGCCGGCTCGC GGGGC TCGTCACCTTCCTCGG CGCCTTCGGCTTCCTCATCGCATGTCACATGTACTAC ATGAGT GGAGATGC ATGGAAGGA GGGTGGCATTGATGC AACAGGTGCTTTAATGGTTTTAACATTGAAAATCATTTCATGTGCAATAAACTACAGTGACGGTATGTTGAAGGAAGAGGGTTTGCGTGATGCCCAGAAAAAGTATCGTTTGGCTAAACTTCCTTCTTTGATCGAATATTTTGGCTACTGCCTCTGCTGTGGCAGCCATTTTGCTGGGCCAGTATATGAGATGAAAGATTATCTTGAATATACTGAACGGAAAGGATTATGGGCCAGCCCAACTCCTTCACCACTATTGCCTACTTTGCGTGCTCTAGTTCAAGCTGGCGCATGTATGGGGTTATATTTGTATCTATCACCTCAATTTCCACTTTCACGGTTTAGCGAGCCCTTATATTATGAGTGGGGTTTCTGGCACCG ] [+] EMBL AU093540 [ CTCTGNGGCGGNGGCGGCGGCGACGGCGGCGATGGGGCTGGAGATGGAGGGGATGGCGGCGGCGATCGGCGTGTCGGTGCCCGTGCTCCGCTTCCTGCTCTGCTTCGCGGCCACCATCCCGACGGGCCTCATGTGGCGGGCGGTGCCCGGCGCCGCGGGGC GCACCT CTACGCGGGGCTCACCGGCGCCGCGC TTTCCTACCTC TCG TTC GGGGCCAC ATCC AACCTCCTCTTCGTCGTGCCCATGGCGTTCGGGTA CTCGCCATGCTCCTCTGCCGCCGGCTCGC GGGGCTTCGTCACCTTCCTCGG CGCCTTCGGCTTCCTCATCGCATGTCACATGTACTAC ATGAGT GGAGATGC ATGGAAGGA NGGTGGCATTG ] [+] EMBL CB655925 [ GCGGCGGCGGCGGCGGCGACGGCGGCGATGGGGCTGGAGATGGAGGGGATGGCGGCGGCGATCGGCGTGTCGGTGCCCGTGCTCCGCTTCCTGCTCTGCTTCGCGGCCACCATCCCGACGGGCCTCATGTGGCGGGCGGTGCCCGGCGCCGCGGGGCGGCACCT CTACGCGGGGCTCACCGGCGCCGCGC TTTCCTACCTC TCG TTC GGGGCCAC ATCC AACCTCCTCTTCGTCGTGCCCATGGCGTTCGGGTACCTCGCCATGCTCCTCTGCCGCCGGCTCGC GGGGC TCGTCACCTTCCTCGG CGCCTTCGGCTTCCTCATCGCATGTCACATGTACTAC ATGAGT GGAGATGC ATGGAAGGA GGGTGGCATTGATGC AACAGGTGCTTTAATGGTTTTAACATTGAAAATCATTTCATGTGCAATAAACTACAGTGACGGTATGTTGAAGGAAGAGGGTTTGCGTGATGCCCAGAAAAAGTATCGTTTGGCTAAACTTCCTTCTTTGATCGAATATTTTGGCTACTGCCTCTGCTGTGGCAGCCATTTTGCTGGGCCAGTATATGAGATGAAAGATTATCTTGAATATACTGAACGGAAAGGATTATGGGCCAGCCCAACTCCTTCACCACTATTGCCTACTTTGCGTGCTCTAGTTCAAGCTGGCGCATGTATGGGGTTATATTTGTATCTATCACCTCAATTTCCACTTTCACGGTTTAGCGAGCCCTTATATTATGAGTGGGGTTTCTGGCACCGGCTCTTCTATCAGTACATGTCAGGCTTTACTGCTCGTTGGAAATA ] [+] EMBL CA923307 [ GT GGAGATGC ATGGAAGGA GGGTGGCATTGATGC AACAGGTGCTTTAATGGTTTTAACATTGAAAATCATTTCATGTGCAATAAACTACAGTGACGGTATGTTGAAGGAAGAGGGTTTGCGTGATGCCCAGAAAAAGTATCGTTTGGCTAAACTTCCTTCTTTGATCGAATATTTTGGCTACTGCCTCTGCTGTGGCAGCCATTTTGCTGGGCCAGTATATGAGATGAAAGATTATCTTGAATATACTGAACGGAAAGGATTATGGGCCAGCCCAACTCCTTCACCACTATTGCCTACTTTGCGTGCTCTAGTTCAAGCTGGCGCATGTATGGGGTTATATTTGTATCTATCACCTCAATTTCCACTTTCACGGTTTAGCGAGCCCTTATATTATGAGTGGGGTTTCTGGCACCGGCTC ] [+] EMBL CA882857 [ GT GGAGATGC ATGGAAGGA GGGTGGCATTGATGC AACAGGTGCTTTAATGGTTTTAACATTGAAAATCATTTCATGTGCAATAAACTACAGTGACGGTATGTTGAAGGAAGAGGGTTTGCGTGATGCCCAGAAAAAGTATCGTTTGGCTAAACTTCCTTCTTTGATCGAATATTTTGGCTACTGCCTCTGCTGTGGCAGCCATTTTGCTGGGCCAGTATATGAGATGAAAGATTATCTTGAATATACTGAACGGAAAGGATTATGGGCCAGCCCAACTCCTTCACCACTATTGCCTACTTTGCGTGCTCTAGTTCAAGCTGGCGCATGTATGGGGTTATATTTGTATCTATCACCTCAATTTCCACTTTCACGGTTTAGCGAGCCCTTATATTATGAGTGGGGTTTCTGGCACCGGCTCT ] [+] EMBL CF306235 [ ACTTTCACGGTTTAGCGAGCCCTTATATTATGAGTGGGGTTTCTGGCACCGGCTCTTCTATCAGTACATGTCAGGCTTTACTGCTCGTTGGAAATACTACTTTATATGGTCACTTTCAGAAGCTGCAATCATTATATCTGGTCTGGGTTTTAGCGGCTGGTCTGATTCATCTCCCCCGAAAGCCAAATGGGATCGTGCAAAAAATGTTGATGTTTTAGGTGTCGAATTAGCTACAAGTGCAGTTCAGTTGCCGCTTATGTGGAACATTCAAGTGAGCACATGGCTGCGATACTATGTTTATGAGAGGTTAGTTCAGAAAGGAAAGAAACCTGGTTTCCTCCAGTTGCTGGGTACACAGACAGTCAGTGCTGTCTGGCATGGTCTTTATCCCGGATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCAAAAGTCATATACAGATGGCAACAAGCAGTCAGC AAT CCAGTCTTCCACGCTATCCTGGTTTTTGTAAATTTTTCATACACCTTGATGGTCCTTAACTACTCATGTATTGGGTTCCAGGTACTGAGCTTCAAGGAAACCCTAGCATCCTACCAGAGCGTATATTATATCGGCACA ATTGTTCCCATTGTAGTTGTCTTGCTGGGTTAT ] [-] EMBL CB633084 [ TTGCCGCTTATGTGGAACATTCAAGTGAGCACATGGCTGCGATACTATGTTTATGAGAGGTTAGTTCAGAAAGGAAAGAAACCTGGTTTCCTCCAGTTGCTGGGTACACAGACAGTCAGTGCTGTCTGGCATGGTCTTTATCCCGGATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCAAAAGTCATATACAGATGGCAACAAGCAGTCAGC AAT CCAGTCTTCCACGCTATCCTGGTTTTTGTAAATTTTTCATACACCTTGATGGTCCTTAACTACTCATGCATTGGGTTCCAGGTACTGAGCTTCAAGGAAACCCTAGCATCCTACCAGAGCGTATATTATATCGGCACA ATTGTTCCCATTGTAGTTGTCTTGCTGGGTTATGTTATCAAGCCAGCCAGGCCAGTGAAGCCAAAGGCTCGGAAGGCA GAATGAGCAACAAGTTGACCTGGTCAAGTGGTCATTACATATAGGAGCGACGAAGAACATTT AATGACGATAATGACGAACTAGTGTCCAGCTATTCTACTGTGGAATTTCGCAGGAGAATGTGATGACTCACCTCTTAAAGTTCTGAACTCCCTTGTGATTGATCAAACATTAAAACGTGGCACTCCCGTTGGATTTTTCTTCTATGTTATGACTACTACTACAACTACATAGGATATCGGCCTTGCGCCTTCGGTTGTTGAGTTCTCTTCTGACCGACTGTTATTCAAAGCGATGTATTTTTTATCACCTTCCCTGGCCTGGAGCCAAATGGAGGTGTGAATGGGCATCATT ] [-] EMBL CB655926 [ TATGTGGANCATTCAAGTGAGCACATGGCTGCGATACTATGTTTATGAGAGGTTAGTTCAGAAAGGAAAGAAACCTGGTTTCCTCCAGTTGCTGGGTACACAGACAGTCAGTGCTGTCTGGCATGGTCTTTATCCCGGATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCAAAAGTCATATACAGATGGCAACAAGCAGTCAGC AAT CCAGTCTTCCACGCTATCCTGGTTTTTGTAAATTTTTCATACACCTTGATGGTCCTTAACTACTCATGTATTGGGTTCCAGGTACTGAGCTTCAAGGAAACCCTAGCATCCTACCAGAGCGTATATTATATCGGCACA ATTGTTCCCATTGTAGTTGTCTTGCTGGGTTATGTTATCAAGCCAGCCAGGCCAGTGAAGCCAAAGGCTCGGAAGGCA GAATGAGCAACAAGTTGACCTGGTCAAGTGGTCATTACATATAGGAGCGACGAAGAACATTT AATGACGATAATGACGAACTAGTGTCCAGCTATTCTACTGTGGAATTTCGCAGGAGAATGTGATGACTCACCTCTTAAAGTTCTGAACTCCCTTGTGATTGATCAAACATTAAAACGTGGCACTCCCGTTGGATTTTTCTTCTATGTTATGACTACTACTACAACTACATAGGATATCGGCCTTGCGCCTTCGGTTGTTGAGTTCTCTTCTGACCGACTGTCATTCAAAGCGATGTATTTTTTATCACCTTCCCTGGCCTGGAGCCAAATGGAGGTGTGAATGGGCATCATTTCTTGGTTCAAAAAAAAGA] [+] EMBL AK059030 [ GTTCAGAAAGGAAAGAAACCTGGTTTCCTCCAGTTGCTGGGTACACAGACAGTCAGTGCTGTCTGGCATGGTCTTTATCCCGGATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCAAAAGTCATATACAGATGGCAACAAGCAGTCAGC AAT CCAGTCTTCCACGCTATCCTGGTTTTTGTAAATTTTTCATACACCTTGATGGTCCTTAACTACTCATGTATTGGGTTCCAGGTACTGAGCTTCAAGGAAACCCTAGCATCCTACCAGAGCGTATATTATATCGGCACA ATTGTTCCCATTGTAGTTGTCTTGCTGGGTTATGTTATCAAGCCAGCCAGGCCAGTGAAGCCAAAGGCTCGGAAGGCA GAATGAGCAACAAGTTGACCTGGTCAAGTGGTCATTACATATAGGAGCGACGAAGAACATTT AATGACGATAATGACGAACTAGTGTCCAGCTATTCTACTGTGGAATTTCGCAGGAGAATGTGATGACTCACCTCTTAAAGTTCTGAACTCCCTTGTGATTGATCAAACATTAAAACGTGGCACTCCCGTTGGATTTTTCTTCTATGTTATGACTACTACTACAACTACATAGGATATCGGCCTTGCGCCTTCGGTTGTTGAGTTCTCTTCTGACCGACTGTCATTCAAAGCGATGTATTTTTTATCACCTTCCCTGGCCTGGAGCCAAATGGAGGTGTGAATGGGCATCAT ] [+] EMBL AU091653 [ acGGCAACAAGCAGTCAGCAAATCCCAGTCTTCCACGCTATCCTGGTTTTTGTAAATTTTTCATACACCTTGATGGTCCTTAACTACTCATGTATTGGGTNCCAGGTACTGAGCTTCAAGGAAACCCTAGCATCCTNCCAGAGCGTATATTATATCGGCACA ATTGTTCCCATTGTAGTTGTCTTGCTGGGTTATGTTATCAAGCCAGCCAGGCCAGTGAAGCCAAAGGCTCGGAAGGCA GAATGAGCAACAAGTTGACCTGGTCAAGTGGTCATTACATATAGGAGCGACGAAGAACATTT AATGACGATAATGACGAACTAGTGTCCAGCTATTCTACTGTGGAATTTCGCAGGAGAATGTGATGACTCACCTCTTAAAGTTCTGAACTCCCTTGTGATTGATCAAACATTAAAACGTGGCACTCCCGTTGGATTTTTCTTCTATGTTATGACTACTACTACAACTACATAGGATATCGGCCTTGCG CTTCGGTTGTTGAGTTCTCTTCTGACCGACTGTCATTCAAAGCGATGTATTTTTTATCACCTTCCCTGGCCTGGAGCCAAATGGAGGTGTGAATGGGCATCATTTCTTGGTTCAAAAA ] [+] EMBL AU095925 [ TTCCACGCTAACCTGGTTTTNGTAAATTTTTCATACACCTTGATGGTCCTTAACTACTCATGTATTGGGTTCCAGGTACTGAGCTTCAAGGAAACCCTAGCATCCTACCAGAGCGTATATTATATCGGCACA ATTGTTCCCATTGTAGTTGTCTTGCTGGGTTATGTTATCAAGCCAGCCAGGCCAGTGAAGCCAAAGGCTCGGAAGGCA GAATGAGCAACAAGTTGACCTGGTCAAGTGGTCATTACATATAGGAGCGACGAAGAACATTTNAATGACGATAATGACGAACTAGTGTCCAGCTATTCTACTGTGGAATTTCGCAGGAGAATGTGATGACTCACCTCTTAAAGTTCTGAACTCCCTTGTGATTGATCAAACATTAAAACGTGGCACTCCCGTTGGATTTTTCTTCTATGTTATGACTACTACTACAACTACATAGGATATCGGCCTTGCG CTTCGGTTGTTGAGTTCTCTTCTGACCGACTGTCATTCAAAGCGATGTATTTTTTATCACCTTCCCTGGCCTGGAGCCAAATGGAGGTGTGAATGGGCATCATTTCTTGGTTCAAAAAA ] [+] EMBL BI810628 [ GATGCCCCTT ACTACTCATCCATTGGTTTCCAGGTACTGAGCTTCAAGGAAACCCTAGCATCCTACCAGAGCGTATATTATATCGGCACACATTGTTCCCATTGTAGTTGTCTTGCTGGGTTATGTTATCAAGCCAG CAGGCCAGTGAA CCCAAGGCTCGGAA GCACGAATGAGCCACAAGTTGACCTGGTCAAGTGGTCATTACATATAGGAGCGACGAAGAACATTT AATGACGATAATGACGAACTAGTGTCCAGCTATTCTACTGTGGAATTTCGCAGGAGAATGTGATGACTCACCTCTTAAAGTTCTGAACTCCCTTGTGATTGATCCAACATTAAAACGTGGCACTCCCGTTGGATTTTTCTTCTATGTTATGACTACTACTACAACTACATAGGATATCGGCCTTGCGCCTTCGGTTGTTGAGTTCTCTTCTGACCGACTGTTATTC AAGCGATGTATTTTTTATCACCTTCCCTGGCCTGGAGCCCAATGGAGGTGTGAATGGGCATCATTTCTTGGTTCAAAAAAAAaa] [+] EMBL AU095914 [ TCGGTTGTTGAGTTCTCTTCTGACCGACTGTCATTCAAAGCGATGTATTTTTTATCACCTTCCNTGGCCTGGAGCCAAATGGAGGTGTGAATGGGCATCATTTCTTGGTTCAAAAAA ] consensusID : consensus_15341#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 819 fasta sequence [GCCGCTTATGTGAACATTCAAGTGAGCACATGGCTGCGATACTATGTTTATGAGAGGTTAGTTCAGAAAGGAAAGAAACCTGGTTTCCTCCAGTTGCTGGGTACACAGACAGTCAGTGCTGTCTGGCATGGTCTTTATCCCGGATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCAAAAGTCATATACAGATGGCAACAAGCAGTCAGCAATCCAGTCTTCCACGCTATCCTGGTTTTTGTAAATTTTTCATACACCTTGATGGTCCTTAACTACTCATGTATTGGGTTCCAGGTACTGAGCTTCAAGGAAACCCTAGCATCCTACCAGAGCGTATATTATATCGGCACAATTGTT-CCCATTGTAGTTGTCTTGCTGGGTTATGTTAT-CAAGCCAGCCAGG-CCAGTGAAGCCAAAGGCTCGGAAGGCAGAATGAGCAACAAGTTGACCTGGTCAAGTGGTCATTACATATAGGAGCGACGAAGAACATTTAATGACGATAATGACGAACTAGTGTCCAGCTATTCTACTGTGGAATTTCGCAGGAGAATGTGATGACTCACCTCTTAAAGTTCTGAACTCCCTTGTGATTGATCAAACATTAAAACGTGGCACTCCCGTTGGATTTTTCTTCTATGTTATGACTACTACTCCAACTACATAGGATA-TCGGCCTTGCGCCTTCGGTTGTTGAGTTCTCTTCTGACCGACTGTCATTCAAAGCGATGTATTTTTTATCACCTTCCCTGGCCTGGAGCCAAATGAAGGTGTGAATGGGCATCATTTCTTGGTTCCCATCCCCTAAAAGA] [-] EMBL CB656428 [GCCGCTTATGTGAACATTCAAGTGAGCACATGGCTGCGATACTATGTTTATGAGAGGTTAGTTCAGAAAGGAAAGAAACCTGGTTTCCTCCAGTTGCTGGGTACACAGACAGTCAGTGCTGTCTGGCATGGTCTTTATCCCGGATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCAAAAGTCATATACAGATGGCAACAAGCAGTCAGCAATCCAGTCTTCCACGCTATCCTGGTTTTTGTAAATTTTTCATACACCTTGATGGTCCTTAACTACTCATGTATTGGGTTCCAGGTACTGAGCTTCAAGGAAACCCTAGCATCCTACCAGAGCGTATATTATATCGGCACAATTGTT CCCATTGTAGTTGTCTTGCTGGGTTATGTTAT CAAGCCAGCCAGG CCAGTGAAGCCAAAGGCTCGGAAGGCAGAATGAGCAACAAGTTGACCTGGTCAAGTGGTCATTACATATAGGAGCGACGAAGAACATTTAATGACGATAATGACGAACTAGTGTCCAGCTATTCTACTGTGGAATTTCGCAGGAGAATGTGATGACTCACCTCTTAAAGTTCTGAACTCCCTTGTGATTGATCAAACATTAAAACGTGGCACTCCCGTTGGATTTTTCTTCTATGTTATGACTACTACTCCAACTACATAGGATA TCGGCCTTGCGCCTTCGGTTGTTGAGTTCTCTTCTGACCGACTGTCATTCAAAGCGATGTATTTTTTATCACCTTCCCTGGCCTGGAGCCAAATGAAGGTGTGAATGGGCATCATTTCTTGGTTCCCATCCCCTAAAAGA] [+] EMBL AU093541 [ TCGGCACAATTGTTCCCCATTGTAGTTGTCTTGCTGGGTTATGTTATCCAAGCCAGCCAGGCCCAGTGAAGCCAAAGGCTCGGAAGGCAGAATGAGCAACAAGTTGACCTGGTCAAGTGGTCATTACATATAGGAGCGACGAAGAACATTTAATGACGATAATGACGAACTAGTGTCCAGCTATTCTACTGTGGAATTTCGCAGGAGAATGTGATGACTCACCTCTTAAAGTTCTGAACTCCCTTGTGATTGATCAAACATTAAAACGTGGCACTCCCGTTGGATTTTTCTTCTATGTTATGANTACTACTNCAANTANATAGGATATTCGGCCTTGC NNTTCGGTTGTTGAaataa ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15341#0 AAAAATTTGGGAGACCACCCACAAATCGCTCGTCGGCGAGCGAATCCAAACCAAATCCTT 60 consensus_15341#1 ------------------------------------------------------------ consensus_15341#0 GTTCTAGTCTTGTATCACCCGCATCTGCGCGTCCCTCTGCGGCGGCGGCGGCGGCGACGG 120 consensus_15341#1 ------------------------------------------------------------ consensus_15341#0 CGGCGATGGGGCTGGAGATGGAGGGGATGGCGGCGGCGATCGGCGTGTCGGTGCCCGTGC 180 consensus_15341#1 ------------------------------------------------------------ consensus_15341#0 TCCGCTTCCTGCTCTGCTTCGCGGCCACCATCCCGACGGGCCTCATGTGGCGGGCGGTGC 240 consensus_15341#1 ------------------------------------------------------------ consensus_15341#0 CCGGCGCCGCGGGGCGGCACCTCTACGCGGGGCTCACCGGCGCCGCGCTTTCCTACCTCT 300 consensus_15341#1 ------------------------------------------------------------ consensus_15341#0 CGTTCGGGGCCACATCCAACCTCCTCTTCGTCGTGCCCATGGCGTTCGGGTACCTCGCCA 360 consensus_15341#1 ------------------------------------------------------------ consensus_15341#0 TGCTCCTCTGCCGCCGGCTCGCGGGGCTCGTCACCTTCCTCGGCGCCTTCGGCTTCCTCA 420 consensus_15341#1 ------------------------------------------------------------ consensus_15341#0 TCGCATGTCACATGTACTACATGAGTGGAGATGCATGGAAGGAGGGTGGCATTGATGCAA 480 consensus_15341#1 ------------------------------------------------------------ consensus_15341#0 CAGGTGCTTTAATGGTTTTAACATTGAAAATCATTTCATGTGCAATAAACTACAGTGACG 540 consensus_15341#1 ------------------------------------------------------------ consensus_15341#0 GTATGTTGAAGGAAGAGGGTTTGCGTGATGCCCAGAAAAAGTATCGTTTGGCTAAACTTC 600 consensus_15341#1 ------------------------------------------------------------ consensus_15341#0 CTTCTTTGATCGAATATTTTGGCTACTGCCTCTGCTGTGGCAGCCATTTTGCTGGGCCAG 660 consensus_15341#1 ------------------------------------------------------------ consensus_15341#0 TATATGAGATGAAAGATTATCTTGAATATACTGAACGGAAAGGATTATGGGCCAGCCCAA 720 consensus_15341#1 ------------------------------------------------------------ consensus_15341#0 CTCCTTCACCACTATTGCCTACTTTGCGTGCTCTAGTTCAAGCTGGCGCATGTATGGGGT 780 consensus_15341#1 ------------------------------------------------------------ consensus_15341#0 TATATTTGTATCTATCACCTCAATTTCCACTTTCACGGTTTAGCGAGCCCTTATATTATG 840 consensus_15341#1 ------------------------------------------------------------ consensus_15341#0 AGTGGGGTTTCTGGCACCGGCTCTTCTATCAGTACATGTCAGGCTTTACTGCTCGTTGGA 900 consensus_15341#1 ------------------------------------------------------------ consensus_15341#0 AATACTACTTTATATGGTCACTTTCAGAAGCTGCAATCATTATATCTGGTCTGGGTTTTA 960 consensus_15341#1 ------------------------------------------------------------ consensus_15341#0 GCGGCTGGTCTGATTCATCTCCCCCGAAAGCCAAATGGGATCGTGCAAAAAATGTTGATG 1020 consensus_15341#1 ------------------------------------------------------------ consensus_15341#0 TTTTAGGTGTCGAATTAGCTACAAGTGCAGTTCAGTTGCCGCTTATGTGGAACATTCAAG 1080 consensus_15341#1 -------------------------------------GCCGCTTATGTG-AACATTCAAG 22 ************ ********** consensus_15341#0 TGAGCACATGGCTGCGATACTATGTTTATGAGAGGTTAGTTCAGAAAGGAAAGAAACCTG 1140 consensus_15341#1 TGAGCACATGGCTGCGATACTATGTTTATGAGAGGTTAGTTCAGAAAGGAAAGAAACCTG 82 ************************************************************ consensus_15341#0 GTTTCCTCCAGTTGCTGGGTACACAGACAGTCAGTGCTGTCTGGCATGGTCTTTATCCCG 1200 consensus_15341#1 GTTTCCTCCAGTTGCTGGGTACACAGACAGTCAGTGCTGTCTGGCATGGTCTTTATCCCG 142 ************************************************************ consensus_15341#0 GATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCAAAAGTCATATACA 1260 consensus_15341#1 GATATATCATATTCTTTGTTCAATCAGCATTGATGATAAATGGTTCAAAAGTCATATACA 202 ************************************************************ consensus_15341#0 GATGGCAACAAGCAGTCAGCAATCCAGTCTTCCACGCTATCCTGGTTTTTGTAAATTTTT 1320 consensus_15341#1 GATGGCAACAAGCAGTCAGCAATCCAGTCTTCCACGCTATCCTGGTTTTTGTAAATTTTT 262 ************************************************************ consensus_15341#0 CATACACCTTGATGGTCCTTAACTACTCATGTATTGGGTTCCAGGTACTGAGCTTCAAGG 1380 consensus_15341#1 CATACACCTTGATGGTCCTTAACTACTCATGTATTGGGTTCCAGGTACTGAGCTTCAAGG 322 ************************************************************ consensus_15341#0 AAACCCTAGCATCCTACCAGAGCGTATATTATATCGGCACAATTGTTCCCATTGTAGTTG 1440 consensus_15341#1 AAACCCTAGCATCCTACCAGAGCGTATATTATATCGGCACAATTGTTCCCATTGTAGTTG 382 ************************************************************ consensus_15341#0 TCTTGCTGGGTTATGTTATCAAGCCAGCCAGGCCAGTGAAGCCAAAGGCTCGGAAGGCAG 1500 consensus_15341#1 TCTTGCTGGGTTATGTTATCAAGCCAGCCAGGCCAGTGAAGCCAAAGGCTCGGAAGGCAG 442 ************************************************************ consensus_15341#0 AATGAGCAACAAGTTGACCTGGTCAAGTGGTCATTACATATAGGAGCGACGAAGAACATT 1560 consensus_15341#1 AATGAGCAACAAGTTGACCTGGTCAAGTGGTCATTACATATAGGAGCGACGAAGAACATT 502 ************************************************************ consensus_15341#0 TAATGACGATAATGACGAACTAGTGTCCAGCTATTCTACTGTGGAATTTCGCAGGAGAAT 1620 consensus_15341#1 TAATGACGATAATGACGAACTAGTGTCCAGCTATTCTACTGTGGAATTTCGCAGGAGAAT 562 ************************************************************ consensus_15341#0 GTGATGACTCACCTCTTAAAGTTCTGAACTCCCTTGTGATTGATCAAACATTAAAACGTG 1680 consensus_15341#1 GTGATGACTCACCTCTTAAAGTTCTGAACTCCCTTGTGATTGATCAAACATTAAAACGTG 622 ************************************************************ consensus_15341#0 GCACTCCCGTTGGATTTTTCTTCTATGTTATGACTACTACTACAACTACATAGGATATCG 1740 consensus_15341#1 GCACTCCCGTTGGATTTTTCTTCTATGTTATGACTACTACTCCAACTACATAGGATATCG 682 ***************************************** ****************** consensus_15341#0 GCCTTGCGCCTTCGGTTGTTGAGTTCTCTTCTGACCGACTGTCATTCAAAGCGATGTATT 1800 consensus_15341#1 GCCTTGCGCCTTCGGTTGTTGAGTTCTCTTCTGACCGACTGTCATTCAAAGCGATGTATT 742 ************************************************************ consensus_15341#0 TTTTATCACCTTCCCTGGCCTGGAGCCAAATGGAGGTGTGAATGGGCATCATTTCTTGGT 1860 consensus_15341#1 TTTTATCACCTTCCCTGGCCTGGAGCCAAATGAAGGTGTGAATGGGCATCATTTCTTGGT 802 ******************************** *************************** consensus_15341#0 TCAAAA-----AAAAGA 1872 consensus_15341#1 TCCCATCCCCTAAAAGA 819 ** * ****** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||