These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15344#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1314 fasta sequence [TGGACTGAAGGAGTAGAAAACTCGCATCTGCACACTGTATTCGCCGCCGCGACCACCACCATCGGAGTCGGACAGTTTCCCCGCCGCCGTGCCAAATTCCCCACCTCCCTTGTTCTTCTTCCTCGCTGCACCTCCTCCTCCTCCTCCTCCTCCTCAGGAGCTCCAATGGACGCCAATCCTCCTACCACCGCCATGTATCCTCTCCACCGCTGCAAAACCATCTACCTGGTCAGGCATGCCCAGGGTGTTCACAATGTGGAAGGCGAGAAGGATCACAGCGCCTACATGTCGCCCCAACTCTTTGACGCCCACC-TTACTCCATTGGGCT-GGAACCAAGTTGAC-TGCCTGCGTGA-NACG-TGAAAAAAAGTGGACTTGCACAAAAGATTGAGCTGGTTATTACTTCCCCTCTACTGAGGACTATGCAAACTGCAGTCGGGGTCTTTGGGGGTGAAAACTCTGTTGATGGAGTAAGTGCACCACCATTAATGGTGGAAAATGCTGGACATAGTAGCCGGCCAGCTATTTCCAGTTTGAACTGCCCACCGTTTCTTGCTTTTAAGGCCTGCAGGGAGCACTTGGGTGTGCATCCCTGTGATAAAAGGAGGAGCATTACAGAATACCAC-GCTCTCTTTCCTGCCATTGATTTTTCGCTGATAGAGAATGATGAAGATGTACTTTGGGAACCAAATGTCAGAGAAGCAAATTCATCTGTCGCAGCTAGGGGCATGAAGTTCATTGACTGGTTATGGACAAGGGAAGAGAAAGAGATAGCTATTGTAAGCCATAGTGGATTCTTATATCACACCTTAAGCATGTACAGCA-GGGAGTGTCATCCAACCATAAGAGAAGAAGTGGGCAAGCA-CTTTGCCAACTGTGAGCTCCGGTCGAT-GGT-GTTGGTCGATACAAGCATGCTTGGGTCTGATTCCCCCAGTTACAACTA-CCCTGGAAGTATTCCAGCTGGACTTGATCTTCCTAGTGATGCTGCACCTTGAGCAAATTCAAGACCTGTGTTAGAGATTGTTACCGTGCATTGGTGCCTTGATTATTTTTCCCAGCCCATTGACACTATTCAAGCTAGCACTGGAAGTCAGAAACTTGGGTGAATT-CAA-ACAGCATCTACAGATAGAACTTACCATTTGTTGCCCAAAAGTATGATCACGATTTTACAGGATATTTTATGCTTACAACTTTAGAGCATATCATGTTTTAAAATTTTACAAGATACTTTATGTCGTATCTCAACACGTACTGAACTTGACTGTAATAAACGTACGATTTACATATTTTA---A---AAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF308580 [TGGACTGAAGGAGTAGAAAACTCGCATCTGCACACTGTATTCGCCGCCGCGACCACCACCATCGGAGTCGGACAGTTTCCCCGCCGCCGTGCCAAATTCCCCACCTCCCTTGTTCTTCTTCCTCGCTGCACCTCCTCCTCCTCCTCCTCCTCCTCAGGAGCTCCAATGGACGCCAATCCTCCTACCACCGCCATGTATCCTCTCCACCGCTGCAAAACCATCTACCTGGTCAGGCATGCCCAGGGTGTTCACAATGTGGAAGGCGAGAAGGATCACAGCGCCTACATGTCGCCCCAACTCTTTGACGCCCACC TTACTCCATTGGGCT GGAACCAAGTTGAC TGCCTGCGTGAGCACG TGAAAAAAAGTGGACTTGCACAAAAGATTGAGCTGGTTATTACTTCCCCTCTACTGAGGACTATGCAAACTGCAGTCGGGGTCTTTGGGGGTGAAAACTCTGTTGATGGAGTAAGTGCACCACCATTAATGGTGGAAAATGCTGGACATAGTAGCCGGCCAGCTATTTCCAGTTTGAACTGCCCACCGTTTC ] [+] EMBL OSS1745A [ ACTCGCATCTGCACACTGTATTCGCCGCCGCGACCACCACCATCGGAGTCGGACAGTTTCCCCGCCGCCGTGCCAAATTCCCCACCTCCCTTGTTCTTNTTCCTNGTTGAACCTCCTCCTCCTCNTCCTCCTCCTNAGGNGCTCCAATGGACGCCAATCCTCCTACCACCGNCATGTATCCTCTCCACCGCTGCAAAACCATCTACCTGGTCAGGCATGCCCAGGGTGTTCACAATGTGGAAGGCGAGAAGGATCACAGCGNCTACATGTCGCCCCAACTCTTTGACGGCCACCTTTACTCCATTGGGCTGGGAACCAAGTTGACTTGCCTGCGTGA NACGTTGAAAAAAAG ] [+] EMBL AU108653 [ GGCGAGAAGGATCACAGCGCCTACATGTCGCCCCAACTCTTTGACGCCCACC TTACTCCATTGGGCT GGAACCAAGTTGAC TGCCTGCGTGA NACG TGAAAAAAAGTGGACTTGCACAAAAGATTGAGCTGGTTATTACTTCCCCTCTACTGAGGACTATGCAAACTGCAGTCGGGGTCTTTGGGGGTGAAAACTCTGTTGATGGAGTAAGTGCACCACCATTAATGGTGGAAAATGCTGGACATAGTAGCCGGNCAGCTATTTCCAGTTTGAACTGNCCACCGTTTCTTGCTTTTAAGGCCTGCAGGGAGC ] [+] EMBL CF310406 [ CTGAGGACTATGCAAACTGCAGTCGGGGTCTTTGGGGGTGAAAACTCTGTTGATGGAGTAAGTGCACCACCATTAATGGTGGAAAATGCTGGACATAGTAGCCGGCCAGCTATTTCCAGTTTGAACTGCCCACCGTTTCTTGCTTTTGAGGCCTGCAGGGAGCACTTGGGTGTGCATCCCTGTGATAAAAGGAGGAGCATTACAGAATACCAC GCTCTCTTTCCTGCCATTGATTTTTCGCTGATAGAGAATGATGAAGATGTACTTTGGGAACCAAATGTCAGAGAAGCAAATTCATCTGTCGCAGCTAGGGGCATGAAGTTCATTGACTGGTTATGGACAAGGGAAGAGAAAGAGATAGCTATTGTAAGCCATAGTGGATTCTTATATCACACCTTAAGCATGTACAGCAGGGGAGTGTCATCCAACCATAAGAGAAGAAGTGGGCAAGCA CTTTGCCAACTGTGAGCTCCGGTCGATGGGT GTTGGTCGATACAAGCATGCTTGGGTCTGATTCCCCCAGTTACAACTACCCCTGGAAGTATTCCAGCTGGACCTGATCTTCCTAGTGATGCTGCACCTTG ] [+] EMBL AU092987 [ GTGATAAAAGGAGGAGCATTNCAGAATACCACGGTTNTCTTTCCTGCCATTGATTTTTCGCTGATAGAGAATGATGAAGATG ACTTTGGGAACCAAATGTCAGAGAAGCAAATTCATCTGTCGCAGCTAGGGGCATGAAGTTCATTGACTGGTTATGG CAAGGGAAGAGAAAGAGATAGCTATTGTAAGCCATAGTGGATTCTTATATCACACCTTAAGCATGTACAGCA GGGAGTGTCATCCAACCATAAGAGAAGAAGTGGGCAAGCA CTTTGCCAACTGTGAGCTCCGGTCGAT GGT GTTGGTCGATACAAGCATGCTTGGGTCTGATTCCCCCAGTTACAACTA CCCTGGAAGTATTCCAGCTGGACTTGATCTTCCTAGTGATGCTGCACCTTGAGCAAATTCAAGACCTGTGTTAGAGATTGTTACCGTGCATTGGTGCCTTGATTATTTTTCCCAGCCCATTGACACTATTCAAGCTAGCACTGGAAGTCAGAAACTTGGGTGAATT CAA ACAGCATCTACAGATAGAACTTACCATTTGTTGCCCAAAAGTATGATCACGATTTTACAGGATATTTTATGCTTACAACTTTAGAGCATATCATGTTTTAAAATTTTACAAGATACTTTATGTCGTATCTCAACACGTACTGAACTTGACTGTAATAAACGTACGATTTACATAaaaa ] [-] EMBL CF310407 [ AAAGAGATAGCTATTGTAAGCCATAGTGGATTCTTATATCACACCTTAAGCATGTACAGCA GGGAGTGTCATCCAACCATAAGAGAAGAAGTGGGCAAGCA CTTTGCCAACTGTGAGCTCCGGTCGAT GGT GTTGGTCGATACAAGCATGCTTGGGTCTGATTCCCCCAGTTACAACTA CCCTGGAAGTATTCCAGCTGGACCTGATCTTCCTAGTGATGCTGCACCTTGAGCAAATTCAAGACCTGTGTTAGAGATTGTTACCGTGCATTGGTGCCTTGATTATTTTTCCCAGCCCATTGACACTATTCAAGCTAGCACTGGAAGTCAGAAACTTGGGTGAATT CAA ACAGCATCTACAGATAGAACTTACCATTTGTTGCCCAAAAGTATGATCACGATTTTACAGGATATTTTATGCTTACAACTTTAGAGCATATCATGTTTTAAAATTTTACAAGATACTTTATGTCGTATCTCAACACGTACTGAACTTGACTGTAATAAACGTACGATTTACATA A A AAAA ] [+] EMBL AU092055 [ TGTCATCCANCCATAAGAGAAGAAGTGGGCAAGCA CTTTGCCAACTGTGAGCTCCGGTCGAT GGT GTTGGTCGATACAAGCATGCTTGGGTCTGATTCCCCCAGTTACAACTN CCCTGGAAGTATTCCAGCTGGACTTGATCTTCCTAGTGATGCTGCACCTTGAGCAAATTCAAGACNTGTGTTAGAGATTGTTACCGTGCATTGGTGCCTTGATTATTTTTCCCAGCCCATTGACACTATTCAAGCTAGCACTGGAAGTCAGAAACTTGGGTGAATT CAA ACAGCATCTACAGATAGAACTTACCATTTGTTGCCCAAAAGTATGATCACGATTTTACAGGATATTTTATGCTTACAACTTTAGAGCATATCATGTTTTAAAATTTTACAAGATACTTTATGTCGTATCTCAACACGTACTGAACTTGACTGTAATAAACGTACGATTTACATATTTTA A AAAAAAAAA ] [+] EMBL BI798616 [ AAGCA CTTTGCCAACTGTGAGCTCCGGTCGAT GGT GTTGGTCGATACAAGCATGCTTGGGTCTGATTCCCCCAGTTACAACTA CCTGGAAGTATTCCAGCTGGACTTGATCTTCCTAGTGATGCTGCACCTTGAGCAAATTCAAGACCTGTGTTAGAGATTGTTACCGTGCATTGGTGCCTTGATTATTTTTCCCAGCCCATTGACACTATTCAAGCTAGCACTGGAAGTCTGAAACTTGGGTGAATT C A ACAGCATCTACAGATAGAACTTACCATTTGTTGCCCAAAAGTATGATCACGATTTTACAGGATATTTTATGCTTAC ACTTTAGAGCATATCATGTTTTAAAATTTTACAAGATACTTTATGTCGTATCTCAACACGTACTGAACTTGACTGTAATAAACGTACGATTTACATATGTTA A AAAA ] [+] EMBL BI799072 [ AAGCATCTTTGCCAACTGTGAGCTCCGGTCGAT GGTGGTTGGTCGATACAAGCATGCTTGGGTCTGATTCCCCCAGTTACAACTA CCCTGGAAGTATTCCAGCTGGACTTGATCTTCCTAGTGATGCTGCACCTTGAGCAAATTCAAGACCTGTGTTAGAGATTGTTACCGTGCATTGGTGCCTTGATTATTTTTCCCAGCCCATTGACACTATTCAAGCTAGCACTGGAAGTCTGAAACTTGGGTGAATTGCAA ACAGCATCTACAGATAGAACTTACCATTTGTTGCCC AAAGTATGATCACGATTTTACAGGATATTTTATGCTTAC ACTTTAGAGCATATCATGTTTTAAAATTTTAC AGATACTTTATGTCGTATCTCAACACGTACTGAACTTGACTGTAATAAACGTACGATTTACATATTTTA A AAAA ] [+] EMBL BI799454 [ AAGCA CTTTGCCAACTGTGAGCTCCGGTCGAT GGT GTTGGTCGATACAAGCATGCTTGGGTCTGATTCCCCCAGTTACAACTA CCCTGGAAGTATTCCAGCTGGACTTGATCTTCCTAGTGATGCTGCACCTTGAGCAAATTCAAGACCTGTGTTAGAGATTGTTACCGTGCATTGGTGCCTTGATTATTTTTCCCAGCCCATTGACACTATTCAAGCTAGCACTGGAAGTCTGAAACTTGGGTGAATT CAACAC GCATCTACAGATAGAACTTACCATTTGTTGCCC AAAGTATGATCACGATTTTACAGGATATTTTATGCTTACAACTTTAGAGCATATCATGTTTTAAAATTTTACAAGATACTTTATGTCGTATCTCAACACGTACTGAACTTGACTGTAATAAACGTACGATTTACATATTTTA A AAAA ] [-] EMBL CF308581 [ CA CTTTGCCAACTGTGAGCTCCGGTCGAT GGT GTTGGTCGATACAAGCATGCTTGGGTTTGATTCCCCCAGTTACAACTA CCCTGGAAGTATTCCAGCTGGACTTGATCTTCCTAGTGATGCTGCCCCTTGAGCAAATTCAAGACCTGTGTTAGAGATTGTTACCGTGCATTGGTGCCTTGATTATTTTTCCCAGCCCATTGACACTATTCAAGCTAGCACTGGAAGTCAGAAACTTGGGTGAATT CAA ACAGCATTTACAGATAGAACTTACCATTTGTTGCCCAAAAGTATGATCCCGATTTTACAGGATATTTTATGCTTACAACTTTAGAGCATATCATGTTTTAAAATTTTACAAGATACTTTATGTCGTATCTCAACACGTACTGAACTTGACTGTAATAAACGTACGATTTACATATTTTACTCATGTAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_15344#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 579 fasta sequence [TTGGCACGAGCCGAAAGCCTCAAAGTAGTAATGGTCCAGCTGCTCCAGCACTCGCATCTGCACACTGTATTCGCCGCCGCGACCACCACCATCGGAGTCGGACAGTTTCCCCGCCGCCGTGCCAAATTCCCCACCTCCCTTGTTCTTCTTCCTCGCTGCACCTCCTCCTCCTCCTCCTCCTCCTCAGGAGCTCCAATGGACGCCAAT-CCTCCTACCACCGCCATGTATCCTCTCCACCGCTGCAAAACCATCTACCTGGTCAGGCATGCCCAGGGTGTTCACAATGTGGAAGGCGAGAAGGATCACAGCGCCTACATGTCGCCCCAACTCTTTGACGGCCACCTTACTCCATT-GGGCTGGAACCAAGTTGACTGCCTGCGTGAGCAC-GTGAAAAAAAGT-GGACTTGCACAAAAGATTGAGCTGGTTATTACTTCCCCTCTACTGAGGACTATGCAAACTGCAGTCGGGGTCTTTGGGGGTGAAAACTCTGTTGATGGAGTAAGTGCACCGCCATTAATGGTGGAAAATGCTGGACATAGTAGCCGGCCAGCTATTTCCAGTTTGAACTGCCCACCGTTT] [+] EMBL CF309181 [TTGGCACGAGCCGAAAGCCTCAAAGTAGTAATGGTCCAGCTGCTCCAGCACTCGCATCTGCACACTGTATTCGCCGCCGCGACCACCACCATCGGAGTCGGACAGTTTCCCCGCCGCCGTGCCAAATTCCCCACCTCCCTTGTTCTTCTTCCTCGCTGCACCTCCTCCTCCTCCTCCTCCTCCTCAGGAGCTCCAATGGACGCCAAT CCTCCTACCACCGCCATGTATCCTCTCCACCGCTGCAAAACCATCTACCTGGTCAGGCATGCCCAGGGTGTTCACAATGTGGAAGGCGAGAAGGATCACAGCGCCTACATGTCGCCCCAACTCTTTGACGCCCACCTTACTCCATT GGGCTGGAACCAAGTTGACTGCCTGCGTGAGCAC GTGAAAAAAAGT GGACTTGCACAAAAGATTGAGCTGGTTATTACTTCCCCTCTACTGAGGACTATGCAAACTGCAGTCGGGGTCTTTGGGGGTGAAAACTCTGTTGATGGAGTAAGTGCACCGCCATTAATGGTGGAAAATGCTGGACATAGTAGCCGGCCAGCTATTTCCAGTTTGAACTGCCCACCGTTT] [+] EMBL C28493 [ CACGAGCTGAAAGCCTCAAAGTAGTAATGGTCCAGCTGCTCCAGCACTCGCATCTGCACACTGTATTCGCCGCCGCGACCACCACCATCGGAGTCGGACAGTTTCCCCGCCGCCGTGCCAAATTCCCCACCTCCCTTGTTCTTCTTCCTCGCTGCACCTCCTCCTCCTCCTCCTCCTCCTCAGGAGCTCCAATGGACGCCAAT CCTCCTACCACCGCCATGTATCCTCTCCACCGCTGCAAAACCATCTACCTGGTCAGGCATGCCCAGGGTGTTCACAATGTGGAAGGCGAGAAGGATCACAGCGCCTACATGTCGNCCCAACTCTTTGACGGCCACCTTACTNCATTGGGGCTGGAACCAAGTTGACTGCCTTCGTTAGAACGGTGAAAAAAAGTGGGANTTGCACAAAAGATTNAGGTG ] [+] EMBL OSC103421 [ gCTCAAAGTAGTAATGGTCCAGCTGCTCCAGCACTCGCATCTGCACACTGTATTCGCCGNCGCGACCACCACCATCGGAGTCGGACAGTTTCCCCGCCGCCNTGCCAAATTCCCCACCTCCCTTGTTCTTCTTCCTCGCTGCACCTCCTCCTCCTNCNNCTCCTCCTCAGGAGCTCCAATGGACGACAAT CNTNCTACCACCGNCATGTATCCTCTCCACCGCT ] [+] EMBL OSC103361 [ CAGCTGCTCCAGCACTCGNATCTGCACACTGTATTCGNCGCCGCGACCACCACCATCGGAGTCGGACAGTTTCCCCGNCGCCGTGCCAAATTCCCCACCTCCCTTNTTCTTCTTCCTCGATGCACCTCCTCCTCCTCNNCCTNCTCCTCAGGAGCTCCAATGGACGCCAATACCTCCTACCANCGACATGTATCCTCTNCACCGNTGCAAAACCATCTAACTGGTCAGGCATGCCCAGGGTGTTCACAATGTGGAAGGCGAGAAGGATCACAGCGACTACATGT ] [+] EMBL OSS2342A [ ACTCGCATCTGCACACTGTATTCGCCGCCGCGACCACCACCATCGGAGTCGGACAGTTTCCCCGCCGCCGTGCCAAATTCCCCACCTCCCTTGTTCTTCTTCCTCGCTGCACCTCCTCCTCCTCCTCCTCCTCCTCAGGAGCTCCAATGGACGCCAAT CCTCCTACCACCGCCATGTATCCTCTCCACCGCTGCAAAACCATCTACCTGGTCAGGCATGCCCAGGGTGTTCACAATGTGGAAGGCGAGAAGGATCACAGCGCCTACATGTCGCCCCAACTCTTTGACGG ] consensusID : consensus_15344#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 562 fasta sequence [AAAGAGATAGCTATTGTAAGCCATAGTGGATTCTTATATCACCCCTTAAGCATGTACAGCAGGGAGTGTCATCCACCCATAAGAGAAGAAGTGGGCAAGCACTTTGCCAACTGTGAGCTCCGGTCGATGGTGTTGGTCGATACAAGCATGCTTGGGTTTGATTCCCCCAGTTACAACTACCCTGGAAGTATTCCAGCTGGACTTGATCTTCCTAGTGATGCTGCCCCTTGAGCAAATTCAAGACCTGTGTTAGAGATTGTTCCCGTGCATTGGTGCCTTGATTATTTTTCCCAGCCCATTGACACTATTCAAGCTAGCACTGGAAGTCAGAAACTTGGGTGAATTCAAACAGCATCTACAGATAGAACTTACCATTTGTTGCCCAAAAGTATGATCACGATTTTACAGGATATTTTATGCTTACAACTTTAGAGCATATCATGTTTTAAAATTTTACAAGATACTTTATGTCGTATCTCAACACGTACTGAACTTGACTGTAATAAACGTACGATTTACATATTTTACTCATGTACTTTGTGTTGCAAAAAAAAAAAAAAAA] [-] EMBL CF309182 [AAAGAGATAGCTATTGTAAGCCATAGTGGATTCTTATATCACCCCTTAAGCATGTACAGCAGGGAGTGTCATCCACCCATAAGAGAAGAAGTGGGCAAGCACTTTGCCAACTGTGAGCTCCGGTCGATGGTGTTGGTCGATACAAGCATGCTTGGGTTTGATTCCCCCAGTTACAACTACCCTGGAAGTATTCCAGCTGGACTTGATCTTCCTAGTGATGCTGCCCCTTGAGCAAATTCAAGACCTGTGTTAGAGATTGTTCCCGTGCATTGGTGCCTTGATTATTTTTCCCAGCCCATTGACACTATTCAAGCTAGCACTGGAAGTCAGAAACTTGGGTGAATTCAAACAGCATCTACAGATAGAACTTACCATTTGTTGCCCAAAAGTATGATCACGATTTTACAGGATATTTTATGCTTACAACTTTAGAGCATATCATGTTTTAAAATTTTACAAGATACTTTATGTCGTATCTCAACACGTACTGAACTTGACTGTAATAAACGTACGATTTACATATTTTACTCATGTACTTTGTGTTGCAAAAAAAAAAAAAAAA] consensusID : consensus_15344#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 346 fasta sequence [AGGTGGATNGCTGGCAACCNCTTTGGAGGCCAAAATTTCAAAGGAACCCTGGTTGTTTAAGGAGGATTAGTTACCGTGGCATTGTGCCTTGATTA--TTTTCCCAGCCCATC-GACACTATTCAAGCTAGCACTGGAAGTCAGAAACTTGGGTGAATTCAAACAGCATCTACAGATAGAACTTACCATTTGTTGCCCAAAAGTATGATCACGATTTTACAGGATATTTTATGCTTACAACTTTAGAGCATATCATGTTTTAAAATTTTACAAGATACTTTATGTCGTATCTCAACACGTACTGAACTTGACTGTAATAAACGTACGATTTACATAAAAAAAAAAAAAAA] [+] EMBL AU097133 [AGGTGGATNGCTGGCAACCNCTTTGGAGGCCAAAATTTCAAAGGAACCCTGGTTGTTTAAGGAGGATTAGTTACCGTGGCATTGTGCCTTGATTA TTTTCCCAGCCCATC GACACTATTCAAGCTAGCACTGGAAGTCAGAAACTTGGGTGAATTCAAACAGCATCTACAGATAGAACTTACCATTTGTTGCCCAAAAGTATGATCACGATTTTACAGGATATTTTATGCTTACAACTTTAGAGCATATCATGTTTTAAAATTTTACAAGATACTTTATGTCGTATCTCAACACGTACTGAACTTGACTGTAATAAACGTACGATTTACATAAAAAAAAAAAAAAA] [+] EMBL AU161621 [ tgGCCTTGATTAATTTTTCCCAGCCCATCGGACACTATTCAAGCTAGCACTGGAAGTCAGAAACTTGGGTGAATTCAAACAGCATCTACAGATAGAACTTACCATTTGTTGCCCAAAAGTATGATCACGATTTTACAGGATATTTTATGCTTACAACTTTAGAGCATATCATGTTTTAAAATTTTACAAGATACTTTATGTCGTATCTCAACACGTACTGAACTTGACTGTAATAAACGTACGATTTACATAAAAAAAAAAAAA ] [+] EMBL BI811371 [ TAGAACTTACCATTTGTTGCCC AAAGTATGATCACGATTTTACAGGATATTTTATGCTTAC ACTTTAGAGCATATCATGTTTTAAAATTTTACAAGATACTTTATGTCGTATCTC ACACGTACTGAACTTGACTGTAATAAACGTACGATTTACATAAAAAA ] consensusID : consensus_15344#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 280 fasta sequence [AGCCACTGGAAAGTCAGAAANCTTGGGGTGAANTCAAACAGCATCTACAGATAGNACCTTACCATTTGTTGCCCAAAAGTATGATCACGATTTTACAGGATANTTTATGCTTACAACTTTAGAGCATATCATGTTTTAAAATTTTACNAGATACTTTATGTCGTATCTCAACACGTACTGAACTTGACTGTAATAAACGTACGATTTACATATTTTACTCATGTACTTTGTGTTGCTTTTGTTTGCTTACGGCTTGGGAGTTCACGGGNCAAAAAAAAAA] [+] EMBL AU108652 [AGCCACTGGAAAGTCAGAAANCTTGGGGTGAANTCAAACAGCATCTACAGATAGNACCTTACCATTTGTTGCCCAAAAGTATGATCACGATTTTACAGGATANTTTATGCTTACAACTTTAGAGCATATCATGTTTTAAAATTTTACNAGATACTTTATGTCGTATCTCAACACGTACTGAACTTGACTGTAATAAACGTACGATTTACATATTTTACTCATGTACTTTGTGTTGCTTTTGTTTGCTTACGGCTTGGGAGTTCACGGGNCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15344#2 ------------------------------------------------------------ consensus_15344#4 ------------------------------------------------------------ consensus_15344#3 ------------------------------------------------------------ consensus_15344#0 TGGACTGAAGGAGTAGAAAACTCGCATCTGCACACTGTATTCGCCGCCGCGACCACCACC 60 consensus_15344#1 ------------------------------------------------------------ consensus_15344#2 ------------------------------------------------------------ consensus_15344#4 ------------------------------------------------------------ consensus_15344#3 ------------------------------------------------------------ consensus_15344#0 ATCGGAGTCGGACAGTTTCCCCGCCGCCGTGCCAAATTCCCCACCTCCCTTGTTCTTCTT 120 consensus_15344#1 ------------------------------------------------------------ consensus_15344#2 ------------------------------------------------------------ consensus_15344#4 ------------------------------------------------------------ consensus_15344#3 ------------------------------------------------------------ consensus_15344#0 CCTCGCTGCACCTCCTCCTCCTCCTCCTCCTCCTCAGGAGCTCCAATGGACGCCAATCCT 180 consensus_15344#1 ------------------------------------------------------------ consensus_15344#2 ------------------------------------------------------------ consensus_15344#4 ------------------------------------------------------------ consensus_15344#3 ------------------------------------------------------------ consensus_15344#0 CCTACCACCGCCATGTATCCTCTCCACCGCTGCAAAACCATCTACCTGGTCAGGCATGCC 240 consensus_15344#1 ------------------------------------------------------------ consensus_15344#2 ------------------------------------------------------------ consensus_15344#4 ------------------------------------------------------------ consensus_15344#3 ------------------------------------------------------------ consensus_15344#0 CAGGGTGTTCACAATGTGGAAGGCGAGAAGGATCACAGCGCCTACATGTCGCCCCAACTC 300 consensus_15344#1 ------------------------------------------------------------ consensus_15344#2 ------------------------------------------------------------ consensus_15344#4 ------------------------------------------------------------ consensus_15344#3 ------------------------------------------------------------ consensus_15344#0 TTTGACGCCCACCTTACTCCATTGGGCTGGAACCAAGTTGACTGCCTGCGTGANACGTGA 360 consensus_15344#1 ------------------------------------------------------------ consensus_15344#2 ------------------------------------------------------------ consensus_15344#4 ------------------------------------------------------------ consensus_15344#3 ------------------------------------------------------------ consensus_15344#0 AAAAAAGTGGACTTGCACAAAAGATTGAGCTGGTTATTACTTCCCCTCTACTGAGGACTA 420 consensus_15344#1 ------------------------------------------------------------ consensus_15344#2 ------------------------------------------------------------ consensus_15344#4 ------------------------------------------------------------ consensus_15344#3 ------------------------------------------------------------ consensus_15344#0 TGCAAACTGCAGTCGGGGTCTTTGGGGGTGAAAACTCTGTTGATGGAGTAAGTGCACCAC 480 consensus_15344#1 ------------------------------------------------------------ consensus_15344#2 ------------------------------------------------------------ consensus_15344#4 ------------------------------------------------------------ consensus_15344#3 ------------------------------------------------------------ consensus_15344#0 CATTAATGGTGGAAAATGCTGGACATAGTAGCCGGCCAGCTATTTCCAGTTTGAACTGCC 540 consensus_15344#1 ------------------------------------------------------------ consensus_15344#2 ------------------------------------------------------------ consensus_15344#4 ------------------------------------------------------------ consensus_15344#3 ------------------------------------------------------------ consensus_15344#0 CACCGTTTCTTGCTTTTAAGGCCTGCAGGGAGCACTTGGGTGTGCATCCCTGTGATAAAA 600 consensus_15344#1 ------------------------------------------------------------ consensus_15344#2 ------------------------------------------------------------ consensus_15344#4 ------------------------------------------------------------ consensus_15344#3 ------------------------------------------------------------ consensus_15344#0 GGAGGAGCATTACAGAATACCACGCTCTCTTTCCTGCCATTGATTTTTCGCTGATAGAGA 660 consensus_15344#1 ------------------------------------------------------------ consensus_15344#2 ------------------------------------------------------------ consensus_15344#4 ------------------------------------------------------------ consensus_15344#3 ------------------------------------------------------------ consensus_15344#0 ATGATGAAGATGTACTTTGGGAACCAAATGTCAGAGAAGCAAATTCATCTGTCGCAGCTA 720 consensus_15344#1 ------------------------------------------------------------ consensus_15344#2 -----------------------------------------AAAGAGATAGCTATTGTAA 19 consensus_15344#4 ------------------------------------------------------------ consensus_15344#3 ------------------------------------------------------------ consensus_15344#0 GGGGCATGAAGTTCATTGACTGGTTATGGACAAGGGAAGAGAAAGAGATAGCTATTGTAA 780 consensus_15344#1 ------------------------------------------------------------ consensus_15344#2 GCCATAGTGGATTCTTATATCACCCCTTAAGCATGTACAGCAGGGAGTGTCATCCACCCA 79 consensus_15344#4 ------------------------------------------------------------ consensus_15344#3 ------------------------------------------------------------ consensus_15344#0 GCCATAGTGGATTCTTATATCACACCTTAAGCATGTACAGCAGGGAGTGTCATCCAACCA 840 consensus_15344#1 ---------------------------TTGGCACGAGCCGAAAGCCTCAAAGTAGTAATG 33 consensus_15344#2 TAAGAGAAGAAGTGGGCAAGCACTTTGCCAACTGTGAGCTCCGGT-CGATGGTGTTGGTC 138 consensus_15344#4 ------------------------------------------------------------ consensus_15344#3 ------------------------------------------------------------ consensus_15344#0 TAAGAGAAGAAGTGGGCAAGCACTTTGCCAACTGTGAGCTCCGGT-CGATGGTGTTGGTC 899 consensus_15344#1 GTCCAGCTGCTCCAGCACTCGCATCTGCACACTGTATTCGCCGCCGCGACCACCACCATC 93 consensus_15344#2 GATACAAGCATGCTTGGGTTTGATTCCCCCAGTTACAACTACCCTGGAAGTATTCCAGCT 198 consensus_15344#4 ------------------------------------------------------------ consensus_15344#3 ---------------------------------------------------AGGTGGATN 9 consensus_15344#0 GATACAAGCATGCTTGGGTCTGATTCCCCCAGTTACAACTACCCTGGAAGTATTCCAGCT 959 consensus_15344#1 GGAGTCGGACAGTTTCCCCGCCGCCGTGCCAAATTCCCCACCTCCCTTGTTCTTCTTCCT 153 consensus_15344#2 GGACTTGATCTTCCTAGTGATGCTGCCCCTTGAGCAAATTCAAGACCTGTGTTAGAGATT 258 consensus_15344#4 ------------------------------------------------------------ consensus_15344#3 GCTGGCAACCNCTTTGGAGGCCAAAATTTCAAAGGAACCCTGGTTGTTTAAGGAGGATTA 69 consensus_15344#0 GGACTTGATCTTCCTAGTGATGCTGCACCTTGAGCAAATTCAAGACCTGTGTTAGAGATT 1019 consensus_15344#1 CGCTGCACCTCCTCCTCCTCCTCCTCCTCCTCAGGAGCTCCAATGG---ACGCCAATCCT 210 consensus_15344#2 GTTCCCGTGCATTGGTGCCTTGATTATTTTTCCCAGCCCATTGACACTATTCAAGCTAGC 318 consensus_15344#4 -----------------------------------------------------AGCCACT 7 consensus_15344#3 GTTACCGTGGCATTGTGCCTTGATTATTTT-CCCAGCCCATCGACACTATTCAAGCTAGC 128 consensus_15344#0 GTTACCGTGCATTGGTGCCTTGATTATTTTTCCCAGCCCATTGACACTATTCAAGCTAGC 1079 consensus_15344#1 CCTACCACCGCCATGTATCCTCTCCACCGCTGCAAAACCATCTAC-CTGGTCAGGCATGC 269 ** consensus_15344#2 ACTGGAAGTCAGAAACTT---GGGTGAATTCAA--ACAGCATCTACAGATAGAAC-TTAC 372 consensus_15344#4 G--GAAAGTCAGAAANCTTG-GGGTGAANTCAA--ACAGCATCTACAGATAGNACCTTAC 62 consensus_15344#3 ACTGGAAGTCAGAAACTT---GGGTGAATTCAA--ACAGCATCTACAGATAGAAC-TTAC 182 consensus_15344#0 ACTGGAAGTCAGAAACTT---GGGTGAATTCAA--ACAGCATCTACAGATAGAAC-TTAC 1133 consensus_15344#1 CCAGGGTGTTCACAATGTGGAAGGCGAGAAGGATCACAGCGCCTACATGTCGCCC-CAAC 328 * ** ** * ** ** * ***** ***** * * * ** consensus_15344#2 CATTTGTTGCCCAAAA-GTATGATCACGATTTTACAGGAT--ATTTTATGCTTACA-ACT 428 consensus_15344#4 CATTTGTTGCCCAAAA-GTATGATCACGATTTTACAGGAT--ANTTTATGCTTACA-ACT 118 consensus_15344#3 CATTTGTTGCCCAAAA-GTATGATCACGATTTTACAGGAT--ATTTTATGCTTACA-ACT 238 consensus_15344#0 CATTTGTTGCCCAAAA-GTATGATCACGATTTTACAGGAT--ATTTTATGCTTACA-ACT 1189 consensus_15344#1 TCTTTGACGGCCACCTTACTCCATTGGGCTGGAACCAAGTTGACTGCCTGCGTGAGCACG 388 **** * *** ** * * ** * * * *** * ** consensus_15344#2 TTAGAGCATATCATGTTTTAAAATTTTACAAGATACTTTATGTCGTATCTCAACACGTAC 488 consensus_15344#4 TTAGAGCATATCATGTTTTAAAATTTTACNAGATACTTTATGTCGTATCTCAACACGTAC 178 consensus_15344#3 TTAGAGCATATCATGTTTTAAAATTTTACAAGATACTTTATGTCGTATCTCAACACGTAC 298 consensus_15344#0 TTAGAGCATATCATGTTTTAAAATTTTACAAGATACTTTATGTCGTATCTCAACACGTAC 1249 consensus_15344#1 TGAAAAAAAGTGGACTTGCACAAAAGATTGAGCTGGTTATTACTTCCCCTCTACTGAGGA 448 * * * * * ** * ** ** * ** * *** ** consensus_15344#2 TGAACTTGACTGTAATAAACGTAC---GATTTACATATTTTACTCATGTACTTTGTGT-- 543 consensus_15344#4 TGAACTTGACTGTAATAAACGTAC---GATTTACATATTTTACTCATGTACTTTGTGT-- 233 consensus_15344#3 TGAACTTGACTGTAATAAACGTAC---GATTTACATAAAAAAAAAAAAAAA--------- 346 consensus_15344#0 TGAACTTGACTGTAATAAACGTAC---GATTTACATATTTTAAAAAAAAAAAAAAAAA-- 1304 consensus_15344#1 CTATGCAAACTGCAGTCGGGGTCTTTGGGGGTGAAAACTCTGTTGATGGAGTAAGTGCAC 508 * **** * * ** * * * * * * consensus_15344#2 TGCAAAAAAAAAAAAAAAA----------------------------------------- 562 consensus_15344#4 TGCTTTTGTTTGCTTACGGCTTGGGAGTTCACGGGNCAAAAAAAAAA------------- 280 consensus_15344#3 ------------------------------------------------------------ consensus_15344#0 AAAAAAAAAA-------------------------------------------------- 1314 consensus_15344#1 CGCCATTAATGGTGGAAAATGCTGGACATAGTAGCCGGCCAGCTATTTCCAGTTTGAACT 568 consensus_15344#2 ----------- consensus_15344#4 ----------- consensus_15344#3 ----------- consensus_15344#0 ----------- consensus_15344#1 GCCCACCGTTT 579 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||