These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15363#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 1440 fasta sequence [ACAAACGGCATCAATGGCGGCCACATCCCTCCTCTCCCGCCTCCTCATCCTCCCACCACCGGCGCCGGCCGCCGCCGCCTCTCTCCGGCAGCGGAAACCCGCCGCAGCGCACTCCCTATCCTCCAGGGGGCGGAGGCCCCGCCTCGCGGTACAGGCGGTAGCCCCCGCGGCGGCGGAGGAGGAGAAGGGCGGGCTGCCGGCGGCGGAGGCGGAGAGGCTGGCGGAGTTCCTGCGGGAGGACCTCCCCCACCTGTTCGACGACGTCGGCGTCGACCGCTCGGCGTACGACGACCGCGTCCGCTTCCGCGACCCCATCACCCGCCACGACACCATCGACGGCTACCTCCTCAACATCCGCCTCCTCAAGCTCCTCTTCCGTCCCGACTTCTACCTCCACCACGTCGAGCAGACAGGGCCGTACGAGATCACCACGAGGTGGACCATGGTGATGAAGTTCGTTCTACTGCCGTGGAAGCCGGAGCTGGTCTTCACTGGCCTCTCGATCATGGGCGTCAACCCTCAGAATCTCAAGTTCTGTAGCCACGTGGATATTTGGGACTCAATACAGAATAATGAATATTTTTCTTTTGAAGGACTGGGGGATGTCTTCAAGCAGCTACGGATTTACAAGACCCCTGATATAGAAACACCAAAGTACCTTATCCTGAAAAGGACGGCAAACTATGAGATTAGGAGTTATCCACCATTCTTAATAGTTGAAGCAAAAGGAGATAAACTAACCGGATCATCAGGTTTTAATAATGTAACTGGGTATATTTTTGGCAAGAATGCTTCTTCAGAAACGATTGCAATGACTACACCTGTCTTCACTCAGGCTTCTGATGACAAACTCTCAGATGTATCCATCCAGATAGTTTTGCCGATGAACAAAGACTTGGACAGCTTACCAGCTCCAAACACGGAAGCTGTCAACTTGCGAAAGGTAGAAGGTGGCA-TTGCTGCAGTGAAAAAATTCAGTGGGAGACCA-AAAGAGGAAATTGTGATCCAGAAAGAAAAGGAGCTGCGCTCCCAATTACTCAAAGATGTGTTGAAGCCTCAACATGGTTGTTTGCTTGCAC-GCTACAATGATCCTAGAACA-CAGAGCTTTATAAT-GAGGAATGAGGTGCTGATAT-GGTTAAACG-ACTTCACGCT-GGAGTAGTAGTCTTCA-CTGTCTACAAC-AC-ATTT-CT-GC-AACATATAGACAC--TTAGCA-TTGGAGCTTTCGGAGCATCA-TAG-CAAGGTGAAAAAAATTAGGAAGATGCA-TGGATGAAATGATAGGAGAA-TGTAAATACCGAAAAGGTCACTATATTAC-ATGGTAATTCTAGTCCATATGAAAAATGTTTGTGTATAACAAAAGTGAAATGAACAAAATGAAACTGTTTAGAACAAAAAGAATAACCCCCNCCTAGCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK065544 [ACAAACGGCATCAATGGCGGCCACATCCCTCCTCTCCCGCCTCCTCATCCTCCCACCACCGGCGCCGGCCGCCGCCGCCTCTCTCCGGCAGCGGAAACCCGCCGCAGCGCACTCCCTATCCTCCAGGGGGCGGAGGCCCCGCCTCGCGGTACAGGCGGTAGCCCCCGCGGCGGCGGAGGAGGAGAAGGGCGGGCTGCCGGCGGCGGAGGCGGAGAGGCTGGCGGAGTTCCTGCGGGAGGACCTCCCCCACTTGTTCGACGACGTCGGCGTCGACCGCTCGGCGTACGACGACCGCGTCCGCTTCCGCGACCCCATCACCCGCCACGACACCATCGGCGGCTACCTCCTCAACATCCGCCTCCTCAAGCTCCTCTTCCGTCCCGACTTCTACCTCCACCACGTCGAGCAGACAGGGCCGTACGAGATCACCACGAGGTGGACCATGGTGATGAAGTTCGTTCTACTGCCGTGGAAGCCGGAGCTGGTCTTCACTGGCCTCTCGATCATGGGCGTCAACCCTCAGAATCTCAAGTTCTGTAGCCACGTGGATATTTGGGACTCAATACAGAATAATGAATATTTTTCTTTTGAAGGACTGGGGGATGTCTTCAAGCAGCTACGGATTTACAAGACCCCTGATATAGAAACACCAAAGTACCTTATCCTGAAAAGGACGGCAAACTATGAGATTAGGAGTTATCCACCATTCTTAATAGTTGAAGCAAAAGGAGATAAACTAACCGGATCATCAGGTTTTAATAATGTAACTGGGTATATTTTTGGCAAGAATGCTTCTTCAGAAACGATTGCAATGACTACACCTGTCTTCACTCAGGCTTCTGATGACAAACTCTCAGATGTATCCATCCAGATAGTTTTGCCGATGAACAAAGACTTGGACAGCTTACCAGCTCCAAACACGGAAGCTGTCAACTTGCGAAAGGTAGAAGGTGGCA TTGCTGCAGTGAAAAAATTCAGTGGGAGACCA AAAGAGGAAATTGTGATCCAGAAAGAAAAGGAGCTGCGCTCCCAATTACTCAAAGATGTGTTGAAGCCTCAACATGGTTGTTTGCTTGCAC GCTACAATGATCCTAGAACA CAGAGCTTTATAAT GAGGAATGAGGTGCTGATAT GGTTAAACG ACTTCACGCT GGAGTAGTAGTCTTCA CTGTCTACAAC AC ATTT CT GC AACATATAGACAC TTAGCA TTGGAGCTTTCGGAGCATCA TAG CAAGGTGAAAAAAATTAGGAAGATGCA TGGATGAAATGATAGGAGAA TGTAAATACCGAAAAGGTCACTATATTAC ATGGTAATTCTAGTCCATATGAAAAATGTTTGTGTATAACAAAAGTGAAATGAACAAAATGA ] [+] EMBL CB682204 [ GCATCCATGGCGGCCACATCCCTCCTCTCCCGCCTCCTCATCCTCCCACCACCGGCGCCGGCCGCCGCCGCCTCTCTCCGGCAGCGGAAACCCGCCGCAGCGCACTCCCTATCCTCCAGGGGGCGGAGGCCCCGCCTCGCGGTACAGGCGGTAGCCCCCGCGGCGGCGGAGGAGGAGAAGGGCGGGCTGCCGGCGGCGGAGGCGGAGAGGCTGGCGGAGTTCCTGCGGGAGGACCTCCCCCACCTGTTCGACGACGTCGGCGTCGACCGCTCGGCGTACGACGACCGCGTCCGCTTCCGCGACCCCATCACCCGCCACGACACCATCGACGGCTACCTCCTCAACATCCGCCTCCTCAAGCTCCTCTTCCGTCCCGACTTCTACCTCCACCACGTCGAGCAGACAGGGCCGTACGAGATCACCACGAGGTGGACCATGGTGATGAAGTTCGTTCTACTGCCGTGGAAGCCGGAGCTGGTCTTCACTGGCCTCTCGATCATGGGCGTCAACCCTCAGAATCTCAAGTTCTGTAGCCACGTGGATATTTGGGACTCAATACAGAATAATGAATATTTTTCTTTTGAAGGACTGGGGGATGTCTTCAAGCAGCTACGGATTTACAAGACCCCTGATATAGAAACACCAAAGTACCTTATCCTGAAAAGGACGGCAAACTATGAGATTAGGAGTTATCCACCATTCTTAATAGTTGAAGCAAAAGGAGATAAACTAACCGGATCATCACGTTTTAATAATGTAACTGGGTATATTTTTGGCAAGAATGCTTCTTCAGAAACGATT ] [+] EMBL CB679238 [ ATCCCTCCTCTCCCGCCTCCTCATCCTCCCACCACCGGCGCCGGCCGCCGCCGCCTCTCTCCGGCAGCGGAAACCCGCCGCAGCGCACTCCCTATCCTCCAGGGGGCGGAGGCCCCGCCTCGCGGTACAGGCGGTAGCCCCCGCGGCGGCGGAGGAGGAGAAGGGCGGGCTGCCGGCGGCGGAGGCGGAGAGGCTGGCGGAGTTCCTGCGGGAGGACCTCCCCCACCTGTTCGACGACGTCGGCGTCGACCGCTCGGCGTACGACGACCGCGTCCGCTTCCGCGACCCCATCACCCGCCACGACACCATCGACGGCTACCTCCTCAACATCCGCCTCCTCAAGCTCCTCTTCCGTCCCGACTTCTACCTCCACCACGTCGAGCAGACAGGGCCGTACGAGATCACCACGAGGTGGACCATGGTGATGAAGTTCGTTCTACTGCCGTGGAAGCCGGAGCTGGTCTTCACTGGCCTCTCGATCATGGGCGTCAACCCTCAGAATCTCAAGTTCTGTAGCCACGTGGATATTTGGGACTCAATACAGAATAATGAATATTTTTCTTTTGAAGGACTGGGGGATGTCTTCAAGCAGCTACGGATTTACAAGACCCCTGATATAGAAACACCAAAGTACCTTATCCTGAAAAGGACGGCAAACTATGAGATTAGGAGTTATCCACCATTCTTAATAGTTGAAGCAAAAGGAGATAAACTAACCGGATCATCAGGTTTTAATAATGTAACTGGGTATATTTTTGGCAAGAATGCTTCTTCAGAAACGATTGCAATGACTACACCTGTCATCACTCAGGCTTCTGATGACAAACTCTCAGATGT ] [+] EMBL CB679433 [ ATCCCTCCTCTCCCGCCTCCTCATCCTCCCACCACCGGCGCCGGCCGCCGCCGCCTCTCTCCGGCAGCGGAAACCCGCCGCAGCGCACTCCCTATCCTCCAGGGGGCGGAGGCCCCGCCTCGCGGTACAGGCGGTAGCCCCCGCGGCGGCGGAGGAGGAGAAGGGCGGGCTGCCGGCGGCGGAGGCGGAGAGGCTGGCGGAGTTCCTGCGGGAGGACCTCCCCCACCTGTTCGACGACGTCGGCGTCGACCGCTCGGCGTACGACGACCGCGTCCGCTTCCGCGACCCCATCACCCGCCACGACACCATCGACGGCTACCTCCTCAACATCCGCCTCCTCAAGCTCCTCTTCCGTCCCGACTTCTACCTCCACCACGTCGAGCAGACAGGGCCGTACGAGATCACCACGAGGTGGACCATGGTGATGAAGTTCGTTCTACTGCCGTGGAAGCCGGAGCTGGTCTTCACTGGCCTCTCGATCATGGGCGTCAACCCTCAGAATCTCAAGTTCTGTAGCCACGTGGATATTTGGGACTCAATACAGAATAATGAATATTTTTCTTTTGAAGGACTGGGGGATGTCTTCAAGCAGCTACGGATTTACAAGACCCCTGATATAGAAACACCAAAGTACCTTATCCTGAAAAGGACGGCAAACTATGAGATTAGGAGTTATCCACCATTCTTAATAGTTGAAGCAAAAGGAGATAAACTAACCGGATCATCAGGTTTTAATAATGTAACTGGGTATATTTTTGGCAAGAATGCTTCTTCAGA ] [+] EMBL CA757225 [ TCTCCGGCAGCGGAAACCCGCCGCAGCGCACTCCCTATCCTCCAGGGGGCGGAGGCCCCGGCTCGCGGTACAGGCGGTAGCCCCCGCGGCGGCGGAGGAGGAGAAGGGCGGGCTGCCGGCGGCGGAGGCGGAGAGGCTGGCGGAGTTCCTGCGAGAGGACCTCCCCCACCTGTTCGACGACGTCGGCGTCGACCGCTCGGCGTACGACGACCGCGTCCGCTTCCGCGACCCCATCACCCGCCACGACACCATCGACGGCTACCTCCTCAACATCCGCCTCCTCAAGCTCCTCTTCCGCCCCGACTTCTACCTCCACCACGTCGAG CAGGGCCGTACGAGATCACCACGAGGTGGACCATGGTGATGAAGTTCGTTCTACTGCCGTGGAAGCCGGAGCTGGTCTTCACTGGCCTCTCGATCATGGGCGTCAACCCTCAGAATCTCAAGTTCTGTAGCCACGTGGATATTTGGGACTCAATACAGAATAATGAATATTTTTCTTTTGAAGGACTGGGGGATGTCTTCAAGCAGCTACGGATTTACAAGACCCCTGATATAGAAACACCANAGTACCTTATCCTGAANAGGACGGCAAACTATGAGATTAGGAGTTATCCACCATTCTTAATAGTTGAAGCAAAAGG ] [+] EMBL CB673550 [ GTCTTCACCGGCCTCTCGATCATGGGCGTCAACCCTCAGAATCTCAAGTTCTGTAGCCACGTGGATATTTGGGACTCAATACAGAATAATGAATATTTTTCTTTTGAAGGACTGGGGGATGTCTTCAAGCAGCTACGGATTTACAAGACCCCTGATATAGAAACACCAAAGTACCTTATCCTGAAAAGGACGGCAAACTATGAGATTAGGAGTTATCCACCATTCTTAATAGTTGAAGCAAAAGGAGATAAACTAACCGGATCATCAGGTTTTAATAATGTAACTGGGTATATTTTTGGCAAGAATGCTTCTTCAGAAACGATTGCAATGACTACACCTGTCTTCACTCAGGCTTCTGATGACAAACTCTCAGATGTATCCATCCAGATAGTTTTGCCGATGAACAAAGACTTGGACAGCTTACCAGCTCCAAACACGGAAGCTGTCAACTTGCGAAAGGTAGAAGGTGGCA TTGCTGCAGTGAAAAAATTCAGTGGGAGACCA AAAGAGGAAATTGTGATCCAGAAAGAAAAGGAGCTGCGCTCCCAATTACTCAAAGATGTGTTGAAGCCTCAACATGGTTGTTTGCTTGCAC GCTACAATGATCCTAGAACA CAGAGCTTTATAAT GAGGAATGAGGTGCTGATAT GGTTAAACG ACTTCACGCT GGAGTAGTAGTCTTCA CTGTCTACAAC AC ATTT CT GC AACATATAGACAC TTAGCA TTGGAGCTTTCGGAGCATCA TAG CAAGGTGAAAAAAATTATGAAGATGCA TG ] [-] EMBL CB679239 [ GGGACTCAATACAGAATAATGAATATTTCTCTTTTGAAGGACTGGGGGATGTCTTCAAGCAGCTACGGATTTACAAGACCCCTGATATAGAAACACCAAAGTACCTTATCCTGAAAAGGACGGCAAACTATGAGATTAGGAGTTATCCACCATTCTTAATAGTTGAAGCAAAAGGAGATAAACTAACCGGATCATCAGGTTTTAATAATGTAACTGGGTATATTTTTGGCAAGAATGCTTCTTCAGAAACGATTGCAATGACTACACCTGTCTTCACTCAGGCTTTTGATGACAAACTCTCAGATGTATCCATCCAGATAGTTTTGCCGATGAACAAAGACTTGGACAGCTTACCAGCTCCAAACTCGGAAGCTGTCAACTTGCGAAAGGTAGAAGGTGGCA TTGCTGCAGTGAAAAAATTCAGTGGGAGACCA AAAGAGGAAATTGTGATCCAGAAAGAAAAGGAGCTGCGCTCCCAATTACTCAAAGATGTGTTGAAGCCTCAACATGGTTGTTTGCTTGCAC GCTTCAATGATCCTAGAACA CAGAGCTTTATAAT GAGGAATGAGGTGCTGATAT GGTTAAACG ACTTCCCGCT GGAGTAGTAGTCTTCA CTGTCT CAAC AC ATTTCCT GC AACATATAGACAC TTAGCA TTGGAGCTTTGGGAGCATCA TAG CAAGGTGAAAAAAATTAGGAAGACGCA TGGATGAAATGATAGGCGAACTGTAAATGCCGAAAAGGTCGGTATAT ] [-] EMBL CB682203 [ AAGACCCTTGATATAGAAACACCAAAGTACCTTATCCTGAAAAGGACGGCAAACTATGAGATTAGGAGTTATCCACCATTCTTAATAGTTGAAGCAAAAGGAGATAAACTAACCGGATCATCAGGTTTTAATAATGTAACTGGGTATATTTTTGGCAAGAATGCTTCTTCAGAAACGATTGCAATGACTACACCTGTCTTCACTCAGGCTTCTGATGACAAACTCTCAGATGTATCCATCCAGATAGTTTTGCCGATGAACAAAGACTTGGACAGCTTACCAGCTCCAAACACGGAAGCTGTCAACTTGCGAAAGGTAGAAGGTGGCA TTGCTGCAGTGAAAAAATTCAGTGGGAGACCA AAAGAGGAAATTGTGATCCAGAAAGAAAAGGAGCTGCGCTCCCAATTACTCAAAGATGTGTTGAAGCCTCAACATGGTTGTTTGCTTGCAC GCTACAATGATCCTAGAACA CAGAGCTTTATAAT GAGGAATGAGGTGCTGATAT GGTTAAACG ACTTCACGCT GGAGTAGTAGTCTTCA CTGTCTACAAC AC ATTT CT GC AACATATAGACAC TTAGCA TTGGAGCTTTCGGAGCATCA TAG CAAGGTGAAAAAAATTAGGAAGATGCA TGGATGAAATGATAGGAGAA TGTAAATACCGAAAAGGTCACTATATTAC ATGGTAATTCTAGTCCATATGAAAAATGTTTGTGTATAACAAAAGTGAAATGAACAAAATGAAACTGTTTAGAACAAAAAAAAgg ] [-] EMBL CB682205 [ GATATAGAAACACCAAAGTACCTTATCGTGAAAAGGACGGCAAACTATGAGATTAGGAGTTATCCACCATTCTTAATAGTTGAAGCAAAAGGAGATAAACTAACCGGATCATCAGGTTTTAATAATGTAACTGGGTATATTTTTGGCAAGAATGCTTCTTCAGAAACGATTGCAATGACTACACCTGTCTTCACTCAGGCTTCTGATGACAAACTCTCAGATGTATCCATCCAGATAGTTTTGCCGATGAACAAAGACTTGGACAGCTTACCAGCTCCAAACACGGAAGCTGTCAACTTGCGAAAGGTAGAAGGTGGCA TTGCTGCAGTGAAAAAATTCAGTGGGAGACCA AAAGAGGAAATTGTGATCCAGAAAGAAAAGGAGCTGCGCTCCCAATTACTCAAAGATGTGTTGAAGCCTCAACATGGTTGTTTGCTTGCAC GCTACAATGATCCTAGAACA CAGAGCTTTATAAT GAGGAATGAGGTGCTGATAT GGTTAAACG ACTTCACGCT GGAGTAGTAGTCTTCA CTGTCTACAAC AC ATTT CT GC AACATATAGACAC TTAGCA TTGGAGCTTTCGGAGCATCA TAG CAAGGTGAAAAAAATTAGGAAGATGCA TGGATGAAATGATAGGAGAA TGTAAATACCGAAAAGGTCACTATATTAC ATGGTAATTCTAGTCCATATGAAAAATGTTTGTGTATAACAAAAGTGAAATGAACAAAATGAAACTGTTT GAACAAAAAAAAgg ] [-] EMBL CB673551 [ ACACCAAAGTACCTTATCCTGAAAAGGACGGCAAACTATGAGATTAGGAGTTATCCACCATTCTTAATAGTTGAAGCAAAAGGAGATAAACTAACCGGATCATCAGGTTTTAATAATGTAACTGGGTATATTTTTGGCAAGAATGCTTCTTCAGAAACGATTGCAATGACTACACCTGTCTTCACTCAGGCTTCTGATGACAAACTCTCAGATGTATCCATCCAGATAGTTTTGCCGATGAACAAAGACTTGGACAGCTTACCAGCTCCAAACACGGAAGCTGTCAACTTGCGAAAGGTAGAAGGTGGCA TTGCTGCAGTGAAAAAATTCAGTGGGAGACCA AAAGAGGAAATTGTGATCCAGAAAGAAAAGGAGCTGCGCTCCCAATTACTCAAAGATGTGTTGAAGCCTCAACATGGTTGTTTGCTTGCAC GCTACAATGATCCTAGAACA CAGAGCTTTATAAT GAGGAATGAGGTGCTGATAT GGTTAAACG ACTTCACGCT GGAGTAGTAGTCTTCA CTGTCTACAAC AC ATTT CT GC AACATATAGACAC TTAGCA TTGGAGCTTTCGGAGCATCA TAG CAAGGTGAAAAAAATTAGGAAGATGCA TGGATGAAATGATAGGAGAA TGTAAATACCGAAAAGGTCACTATATTAC ATGGTAATTCTAGTCCATATGAAAAATGTTTGTGTATAACAAAAGTGAAATGAACAAGATGAAACTGTTTAGAACAAAAGGAATACCCC ] [+] EMBL AU056388 [ TATCCTGAAAAGGACGGCAAACTATGAGATTAGGAGTTATCCACCATTCTTAATAGTTGAAGCAAAAGGAGATAAACTAACCGGATCATCAGGTTTTAATAATGTAACTGGGTATATTTTTGGCAAGAATGCTTCTTCAGAAACGATTGCAATGACTACACCTGTCTTCACTCAGGCTTCTGATGACAAACTCTCAGATGTATCCATCCAGATAGTTTTGCCGATGAACAAAGACTTGGACAGCTTACCAGCTCCAAACACGGAAGCTGTCAACTTGCGAAAGGTAGAAGGTGGCA TTGCTGCAGTGAAAAAATTCAGTGGGAGACCA AAAGAGGAAATTGTGATCCAGAAAGAAAAGGAGCCGCGCTCCCAATTACTCAAAGATGTGTTGAAGCCTCAACATGGNTGTTTGCTTGCAC GCTACAATGATCCTAGAACA CAGAGCTTTATAATGGAGGAATGAGGTGCTGATATGGGTTAAACG ACTTCACGCTGGGAGTAGTAGTCTTCA CTGTCTACAAC AC ATTT CT GC AACANATAGGCAC TTA ] [+] EMBL AU055988 [ GTTTTGCCGATGAACAAAGACTTGGACAGCTTACCAGCTCCAAACACGGAAGCTGTCAACTTGCGAAAGGTAGAAGGTGGCA TTGCTGCAGTGAAAAAATTCAGTGGGAGACCA AAAGAGGAAATTGTGATCCAGAAAGAAAAGGAGCTGCGCTCCCAATTACTCAAAGATGTGTTGAAGCCTCAACATGGTTGTTTGCTTGCAC GCTACAATGATCCTAGAACA CAGAGCTTTATAAT GAGGAATGAGGTGCTGATAT GGTTAAACG ACTTCACGCT GGAGTAGTAGTCTTCA CTGTCTACAAC AC ATTT CTNGC AACATATAGACAC TTAGCA TTGGAGCTTTCGGAGCATCA TAG CAAGGTGAAAAAAATTAGGAAGATGCA TGGATGAAATGATAGGAGAA TGTAAATACCGAAAAGGTCACTATA ] [+] EMBL BM421290 [ TGGACAGCTTACCAGCTCCCAACACGGAAGCTGTCAACTTGCGAAAGGTAGAAGGTGGCA TTGCTGCAGTGAAAAAATTCAGTGGGAGACCC AAAGAGGAAATTGTGATCCAGAAAGAAAAGGAGCTGCGCTCCCAATTACTCAAAGATGGGTTGAAGCCTCAACATGGTTGTTTGCTTGCAC GCTACAATGATCCTAGAACA CAGAGCTTTATAAT GAGGAATGAGGTTCTGATAT GGTTAAACG ACTTCACGCT GGAGTAGTAGTCTTCA CTGTCTACAAC AC ATTT CT GC AACATATAGACAC TTAGCC TTGGAGCTTTCGGAGCATCA TAGCCAAGGTGAAAAAAATTAGGAAGATGCACTGGATGAAATGATAGGAGAA TGTAAATACCGAAAAGGTCACTATATTACNCTGGTAATTCTAGTCCATATGAAAAATGTTTGTGTATAAC AAAGTGAAATGAAC AAATGAAACTGTTTAGAACAAAAGGAATAACTCCCNCCTAGCCCAAAAAAAAA ] [+] EMBL BM421340 [ ccgAAACACGGAAGCTGTCAACTTGCGAAAGGTAGAAGGTGGCACTTGCTGCAGTGAAAAAATTCAGTGGGAGACCC AAAGAGGAAATTGTGATCCAGAAAGAAAAGGAGCTGCGCTCCCAATTACTCNAAGATGGGTTGAAGCCTCAACATGGTTGTTTGCTTGCAC GCTACGATGATCCTAGAACACCAGAGCTTTATAAT GAGGAATGAGGTTCTGATAT GGTTAAACG ACTTCACGCT GGAGTAGTAGTCTTCC CTGTCTACAAC AC ATTT CT GC AACATATAGACAC TTAGCA TTGGAGCTTTCGGAGCATCA TAG CAAGGTGAAAAAAATTAGGAAGATGCA TGGATGAAATGATAGGAGAA TGTAAATACCGAAAAGGTCACTATATTAC ATGGTAATTCTAGTCCATATGAAAAATGTTTGTGTATAAC AAAGTGAAATGAACCAAATGAAACTGTTTAGAACAAAAAa ] [+] EMBL BM421514 [ CGGAA CTGTCAACTTGCGAAA GTAGAAGGT GCA TTGCTCCAGTGAAAAAATTCAGTGGGAGACCATAAAGAGGAAATTGTGATCCAGAAAGAAAAGGAGCTGCGCTCCCAATTACTCAAAGATGGGTTGAAGCCTCAACATGGTTGTTTGCTTGCACAGCTACAATGATCCTAGAACACCAGAGCTTTATAAT GAGGAATGAGGTTCTGATAT GGTTAAACGTACTTCACGCT GGAGTAGTAGTCTTCACCTGTCTACAACAACAATTT CT GCAAACATATAGACACCTTTAGCACTTGGAGCTTTCGGAGCATCATTAG CAAGGTGAAAAAAATTAGGAAGATGCA TGGATGAAATGATAGGAGAA TGTAAATACCG AAAGGTCACTATATTAC ATGGTAATTCTAGTCCATATGAAAAATGTTTGTGTATAACAAAAGTGAAATGAACAAAATGAAACTGTTTAGAACAAAAGGAATAACTCCCACCTAG ] [+] EMBL AU197819 [ AGGTGGCA TTGCTGCAGTGAAAAAATTCAGTGGGAGACCA AAAGAGGAAATTGTGATCCAGAAAGAAAAGGAGCTGCGCTCCCAATTACTCAAAGATGTGTTGAAGCCTCAACATGGTTGTTTGCTTGCAC GCTACAATGATCCTAGAACA CAGAGCTTTATAAT GAGGAATGAGGTGCTGATAT GGTTAAACG ACTTCACGCT GGAGTAGTAGTCTTCA CTGTCTACAAC AC ATTT NT GC AACATATAGACAC TTAGCA TTGGAGCTTTCGGAGCATCA TAG CAAGGTGAAAAAAATTAGGAAGATGCA TGGATGAAATGATAGGAGAA TGTAAATACCGAAAAGGTCNCTATATTAC ATGGTAATTCTAGTCCATATGAAAAATGTTTGTGTATAACAAAAGTGAAATGAACAAAATGAAACTGTTTAGAACAAAAA ] [-] EMBL CF302554 [ TT TT GC AACATATAGACAT TTAGCA TTGGAGCTTTGGGAGCATCA TAG CAAGGTGAAAAAAATTAGGAAAATGCA TGGATGAAATGATAGGAGAA TGTAAATACCGAAAAGGTCACTATATTAC ATGGTAATTTTAGTCCATATGAAAAATGTTTGTGTATAACAAAAGTGAAATGAACAAAATGAAACTGTTTAGAACAAAAGGAATAACCCCC CCTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_15363#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence [GATAAGGTACTGTGGTGTTTCTATATCAGGGGTCTTGTAAATCCGTAGCTGCTTGAAGACATCCCCCAGTCCTTCAAAAGAAAAATACAGGTGTAGTCATTGCAATCTCTCAGATGTATCCATCCAGATAGTTTTGCCGATGAACAAAGACTTGGACAGCTTACCAGCTCCAAACACGGAAGCTGTCAACTTGCGAAAGGTAGAAGGTGGCATTGCTGCAGTGAAAAAATTCAGTGGGAGACCAAAAGAGGAAATTGTGATCCAGAAAGAAAAGGAGCTGCGCTCCCAATTACTCAAAGATGTGTTGAAGCCTCAACATGGTTGTTTGCTTGCACGCTACAATGATCCTAGAACACAGAGCTTTATAATGAGGAATGAGGTGCTGATATGGTTAAACGACTTCACGCTGGAGTAGTAGTCTTCACTGTGTACAACACATTTCTGCAACATATAGACACTTAGCATTGGAGCTTTCGGAGCATCATAGCAAGGTGAAAAAAATTAGGAAGATGCATGGATGAAATGATAGGAGAATGTAAATACCGAAAAGGTCACTATATTACATGGTAATTCTAGTCCATATGAAAAATGTTTGTGTATAACAAAAGGTGAAATGAACAAAATGAAAAGGGTAGAACAAAAGGAATAACCCCCACTTAGCCAAAAAAAAGG] [-] EMBL CB679434 [GATAAGGTACTGTGGTGTTTCTATATCAGGGGTCTTGTAAATCCGTAGCTGCTTGAAGACATCCCCCAGTCCTTCAAAAGAAAAATACAGGTGTAGTCATTGCAATCTCTCAGATGTATCCATCCAGATAGTTTTGCCGATGAACAAAGACTTGGACAGCTTACCAGCTCCAAACACGGAAGCTGTCAACTTGCGAAAGGTAGAAGGTGGCATTGCTGCAGTGAAAAAATTCAGTGGGAGACCAAAAGAGGAAATTGTGATCCAGAAAGAAAAGGAGCTGCGCTCCCAATTACTCAAAGATGTGTTGAAGCCTCAACATGGTTGTTTGCTTGCACGCTACAATGATCCTAGAACACAGAGCTTTATAATGAGGAATGAGGTGCTGATATGGTTAAACGACTTCACGCTGGAGTAGTAGTCTTCACTGTGTACAACACATTTCTGCAACATATAGACACTTAGCATTGGAGCTTTCGGAGCATCATAGCAAGGTGAAAAAAATTAGGAAGATGCATGGATGAAATGATAGGAGAATGTAAATACCGAAAAGGTCACTATATTACATGGTAATTCTAGTCCATATGAAAAATGTTTGTGTATAACAAAAGGTGAAATGAACAAAATGAAAAGGGTAGAACAAAAGGAATAACCCCCACTTAGCCAAAAAAAAGG] consensusID : consensus_15363#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 602 fasta sequence [CCCCCCACGCGTCCGATCCAGATAGTTTTCCCGATGAACAAAGACTTGGACAGCTTACCAGCTCCAAACACGGANGCTGTCAACTTGCGAAAGGTAGAAGGTGGCATTGCTGCAGTGAAAAAATTCAGTGGGAGNCCAAAAGAGGAAATTGTGATCCAGAAAGAAAAAGANTGCGCTCCCAATTACTCAAAGATGTGTTGAANCCTCAACATGGTTGTTTGCTTGCACGCTACAATGATCCTAGAACACAGAGCTTTATAATGAGGAATGAGGTGCTGATATGGTTAAACGACTTCACGCTGGAGTAGTAGTCTTCACTGTCTACAACACATTTCTGCAACATATAGACACTTAGCATTGGAGCTTTCGGAGCATCATAGCAAGGTGAAAAAAATTAGGAAGATGCATGGATGAAATGATAGGAGAATGTAAATACCGAAAAGGTCACTATATTACATGGTAATTCTAGTCCATATGAAAAATGTTTGTGTATAACAAAAGTGAAATGAACAAAATGAAACTGTTTAGAACAAAAGGAATAACCCCCACCTAGCCACCCTCATTCCCAGTGAAAAAAAAAAAAAAAAAAAAAACCAAAANCN] [+] EMBL AU055989 [CCCCCCACGCGTCCGATCCAGATAGTTTTCCCGATGAACAAAGACTTGGACAGCTTACCAGCTCCAAACACGGANGCTGTCAACTTGCGAAAGGTAGAAGGTGGCATTGCTGCAGTGAAAAAATTCAGTGGGAGNCCAAAAGAGGAAATTGTGATCCAGAAAGAAAAAGANTGCGCTCCCAATTACTCAAAGATGTGTTGAANCCTCAACATGGTTGTTTGCTTGCACGCTACAATGATCCTAGAACACAGAGCTTTATAATGAGGAATGAGGTGCTGATATGGTTAAACGACTTCACGCTGGAGTAGTAGTCTTCACTGTCTACAACACATTTCTGCAACATATAGACACTTAGCATTGGAGCTTTCGGAGCATCATAGCAAGGTGAAAAAAATTAGGAAGATGCATGGATGAAATGATAGGAGAATGTAAATACCGAAAAGGTCACTATATTACATGGTAATTCTAGTCCATATGAAAAATGTTTGTGTATAACAAAAGTGAAATGAACAAAATGAAACTGTTTAGAACAAAAGGAATAACCCCCACCTAGCCACCCTCATTCCCAGTGAAAAAAA ] [+] EMBL AU056389 [ GAGGTGCTGATATGGTTAAACGACTTCACGCTGGAGTAGNAGTCTTCACTGTCNACAACACATTTCTGCAACNTNTAGACNCTTAGCATTGGAGCTTTCGGAGCATCATAGCANGGTGNAAAAAATTAGGAAGATGCATGGATGAAATGATAGGAGAATGTAAATACCGAAAAGGTCACTATATTACATGGTAATTNTAGTCCANATGAAAAATGTTTGTGTATAANAAAAGTGAAATGAACAAAATGAAACTGNTTAGAACAAAAGGAATAACCCCCACTTAGCCACCNTNATTCCNAGTGACAAAAAAAAAAAAAAAAAAAACCAAAANCN] consensusID : consensus_15363#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 200 fasta sequence [CTGGTCTACAACACATTTCTGCAACATATAGACACTTAGCATTGGAGCTTTCGGAGCATCACAGCAAGGTGAAAAAAATTAGGAAGATGCATGGATGAAATGATAGGAGAATGTAAATACCGAAAAGGTCACTATATTACATGGTAATTCTAGTCCATATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCACTGT] [+] EMBL CF333864 [CTGGTCTACAACACATTTCTGCAACATATAGACACTTAGCATTGGAGCTTTCGGAGCATCACAGCAAGGTGAAAAAAATTAGGAAGATGCATGGATGAAATGATAGGAGAATGTAAATACCGAAAAGGTCACTATATTACATGGTAATTCTAGTCCATATGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCACTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15363#0 ACAAACGGCATCAATGGCGGCCACATCCCTCCTCTCCCGCCTCCTCATCCTCCCACCACC 60 consensus_15363#3 ------------------------------------------------------------ consensus_15363#2 ------------------------------------------------------------ consensus_15363#1 ------------------------------------------------------------ consensus_15363#0 GGCGCCGGCCGCCGCCGCCTCTCTCCGGCAGCGGAAACCCGCCGCAGCGCACTCCCTATC 120 consensus_15363#3 ------------------------------------------------------------ consensus_15363#2 ------------------------------------------------------------ consensus_15363#1 ------------------------------------------------------------ consensus_15363#0 CTCCAGGGGGCGGAGGCCCCGCCTCGCGGTACAGGCGGTAGCCCCCGCGGCGGCGGAGGA 180 consensus_15363#3 ------------------------------------------------------------ consensus_15363#2 ------------------------------------------------------------ consensus_15363#1 ------------------------------------------------------------ consensus_15363#0 GGAGAAGGGCGGGCTGCCGGCGGCGGAGGCGGAGAGGCTGGCGGAGTTCCTGCGGGAGGA 240 consensus_15363#3 ------------------------------------------------------------ consensus_15363#2 ------------------------------------------------------------ consensus_15363#1 ------------------------------------------------------------ consensus_15363#0 CCTCCCCCACCTGTTCGACGACGTCGGCGTCGACCGCTCGGCGTACGACGACCGCGTCCG 300 consensus_15363#3 ------------------------------------------------------------ consensus_15363#2 ------------------------------------------------------------ consensus_15363#1 ------------------------------------------------------------ consensus_15363#0 CTTCCGCGACCCCATCACCCGCCACGACACCATCGACGGCTACCTCCTCAACATCCGCCT 360 consensus_15363#3 ------------------------------------------------------------ consensus_15363#2 ------------------------------------------------------------ consensus_15363#1 ------------------------------------------------------------ consensus_15363#0 CCTCAAGCTCCTCTTCCGTCCCGACTTCTACCTCCACCACGTCGAGCAGACAGGGCCGTA 420 consensus_15363#3 ------------------------------------------------------------ consensus_15363#2 ------------------------------------------------------------ consensus_15363#1 ------------------------------------------------------------ consensus_15363#0 CGAGATCACCACGAGGTGGACCATGGTGATGAAGTTCGTTCTACTGCCGTGGAAGCCGGA 480 consensus_15363#3 ------------------------------------------------------------ consensus_15363#2 ------------------------------------------------------------ consensus_15363#1 ------------------------------------------------------------ consensus_15363#0 GCTGGTCTTCACTGGCCTCTCGATCATGGGCGTCAACCCTCAGAATCTCAAGTTCTGTAG 540 consensus_15363#3 ------------------------------------------------------------ consensus_15363#2 ------------------------------------------------------------ consensus_15363#1 ------------------------------------------------------------ consensus_15363#0 CCACGTGGATATTTGGGACTCAATACAGAATAATGAATATTTTTCTTTTGAAGGACTGGG 600 consensus_15363#3 ------------------------------------------------------------ consensus_15363#2 ------------------------------------------------------------ consensus_15363#1 ------------------------------------------------------------ consensus_15363#0 GGATGTCTTCAAGCAGCTACGGATTTACAAGACCCCTGATATAGAAACACCAAAGTACCT 660 consensus_15363#3 ------------------------------------------------------------ consensus_15363#2 ------------------------------------------------------------ consensus_15363#1 ------------------------------------------------------------ consensus_15363#0 TATCCTGAAAAGGACGGCAAACTATGAGATTAGGAGTTATCCACCATTCTTAATAGTTGA 720 consensus_15363#3 ------------------------------------------------------------ consensus_15363#2 ------------------------------------------------------------ consensus_15363#1 ------------------------------------------------------------ consensus_15363#0 AGCAAAAGGAGATAAACTAACCGGATCATCAGGTTTTAATAATGTAACTGGGTATATTTT 780 consensus_15363#3 ------------------------------------------------------------ consensus_15363#2 ------------------------------------------------------------ consensus_15363#1 ------------------------GATAAGGTACTGTGGTGTTTCTATATCAGGGGTCTT 36 consensus_15363#0 TGGCAAGAATGCTTCTTCAGAAACGATTGCAATGACTACACCTGTCTTCACTCAGGCTTC 840 consensus_15363#3 ------------------------------------------------------------ consensus_15363#2 ------------------------------------------------------------ consensus_15363#1 GTAAATCCGTAGCTGCTTGAAGACATCCCCCAGTCCTTCAAAAGAAAAATACAGGTGTAG 96 consensus_15363#0 TGATGACAAACTCTCAGATGTATCCATCCAGATAGTTTTGCCGATGAACAAAGACTTGGA 900 consensus_15363#3 ------------------------------------------------------------ consensus_15363#2 ----------CCCCCCACGCGTCCGATCCAGATAGTTTTCCCGATGAACAAAGACTTGGA 50 consensus_15363#1 TCATTGCAATCTCTCAGATGTATCCATCCAGATAGTTTTGCCGATGAACAAAGACTTGGA 156 consensus_15363#0 CAGCTTACCAGCTCCAAACACGGAAGCTGTCAACTTGCGAAAGGTAGAAGGTGGCATTGC 960 consensus_15363#3 ------------------------------------------------------------ consensus_15363#2 CAGCTTACCAGCTCCAAACACGGANGCTGTCAACTTGCGAAAGGTAGAAGGTGGCATTGC 110 consensus_15363#1 CAGCTTACCAGCTCCAAACACGGAAGCTGTCAACTTGCGAAAGGTAGAAGGTGGCATTGC 216 consensus_15363#0 TGCAGTGAAAAAATTCAGTGGGAGACCAAAAGAGGAAATTGTGATCCAGAAAGAAAAGGA 1020 consensus_15363#3 ------------------------------------------------------------ consensus_15363#2 TGCAGTGAAAAAATTCAGTGGGAGNCCAAAAGAGGAAATTGTGATCCAGAAAGAAAAAGA 170 consensus_15363#1 TGCAGTGAAAAAATTCAGTGGGAGACCAAAAGAGGAAATTGTGATCCAGAAAGAAAAGGA 276 consensus_15363#0 GCTGCGCTCCCAATTACTCAAAGATGTGTTGAAGCCTCAACATGGTTGTTTGCTTGCACG 1080 consensus_15363#3 ------------------------------------------------------------ consensus_15363#2 N-TGCGCTCCCAATTACTCAAAGATGTGTTGAANCCTCAACATGGTTGTTTGCTTGCACG 229 consensus_15363#1 GCTGCGCTCCCAATTACTCAAAGATGTGTTGAAGCCTCAACATGGTTGTTTGCTTGCACG 336 consensus_15363#0 CTACAATGATCCTAGAACACAGAGCTTTATAATGAGGAATGAGGTGCTGATATGGTTAAA 1140 consensus_15363#3 ------------------------------------------------------------ consensus_15363#2 CTACAATGATCCTAGAACACAGAGCTTTATAATGAGGAATGAGGTGCTGATATGGTTAAA 289 consensus_15363#1 CTACAATGATCCTAGAACACAGAGCTTTATAATGAGGAATGAGGTGCTGATATGGTTAAA 396 consensus_15363#0 CGACTTCACGCTGGAGTAGTAGTCTTCACTGTCTACAACACATTTCTGCAACATATAGAC 1200 consensus_15363#3 ---------------------------CTGGTCTACAACACATTTCTGCAACATATAGAC 33 consensus_15363#2 CGACTTCACGCTGGAGTAGTAGTCTTCACTGTCTACAACACATTTCTGCAACATATAGAC 349 consensus_15363#1 CGACTTCACGCTGGAGTAGTAGTCTTCACTGTGTACAACACATTTCTGCAACATATAGAC 456 ** *************************** consensus_15363#0 ACTTAGCATTGGAGCTTTCGGAGCATCATAGCAAGGTGAAAAAAATTAGGAAGATGCATG 1260 consensus_15363#3 ACTTAGCATTGGAGCTTTCGGAGCATCACAGCAAGGTGAAAAAAATTAGGAAGATGCATG 93 consensus_15363#2 ACTTAGCATTGGAGCTTTCGGAGCATCATAGCAAGGTGAAAAAAATTAGGAAGATGCATG 409 consensus_15363#1 ACTTAGCATTGGAGCTTTCGGAGCATCATAGCAAGGTGAAAAAAATTAGGAAGATGCATG 516 **************************** ******************************* consensus_15363#0 GATGAAATGATAGGAGAATGTAAATACCGAAAAGGTCACTATATTACATGGTAATTCTAG 1320 consensus_15363#3 GATGAAATGATAGGAGAATGTAAATACCGAAAAGGTCACTATATTACATGGTAATTCTAG 153 consensus_15363#2 GATGAAATGATAGGAGAATGTAAATACCGAAAAGGTCACTATATTACATGGTAATTCTAG 469 consensus_15363#1 GATGAAATGATAGGAGAATGTAAATACCGAAAAGGTCACTATATTACATGGTAATTCTAG 576 ************************************************************ consensus_15363#0 TCCATATGAAAAATGTTTGTGTATAACAAAAG-TGAAATGAACAAAATGAAACTGTTTAG 1379 consensus_15363#3 TCCATATGAAAAAA--------AAAAAAAAAA-AAAAAAAAAAAAAAAACCACTGT---- 200 consensus_15363#2 TCCATATGAAAAATGTTTGTGTATAACAAAAG-TGAAATGAACAAAATGAAACTGTTTAG 528 consensus_15363#1 TCCATATGAAAAATGTTTGTGTATAACAAAAGGTGAAATGAACAAAATGAAAA-GGGTAG 635 ************* * ** **** *** ** **** * * consensus_15363#0 AACAAAAAGAATAACCCCCNCCTAGCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1439 consensus_15363#3 ------------------------------------------------------------ consensus_15363#2 AACAAAAGGAATAACCCCCACCTAGCCACCCTCATTCCCAGTGAAAAAAAAAAAAAAAAA 588 consensus_15363#1 AACAAAAGGAATAACCCCCACTTAGCCAAAAAAAAGG----------------------- 672 consensus_15363#0 A------------- 1440 consensus_15363#3 -------------- consensus_15363#2 AAAAACCAAAANCN 602 consensus_15363#1 -------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||