These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15369#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 2048 fasta sequence [NTNTNCAACCAAAAAAAGTCNAATTCTGAAAACAAGAGAGAGATCACAGCAGCCGCCGCCATCGCCATCTCTCGGACGGAAACCCTAGACGAGCGACCATGGCCACCATGCCAAGCACTTGCGCCTCCTCCTCCTCCCTCTTCCTCCTCCTCCGCAGGGACAGGAGGAGCAGCAGGAGTGCCAGCCTCCCCGGACCCGCCCGCCGTTTGGGGGTTGTGCGCGCCTCCGCCAAGGAGATCGCCTTCGACCAGGGATCGCGATCCTCCCTCCAGGCCGGCGTCGAGAAGCTCGCCGCCGCCGTCGCCGTCACCCTCGGTCCCAGAGGAAGAAATGTCGTCTTGGATGAGTTTGGGAGCCCCAAAGTGGTCAATGACGGAGTTACCATTGCTCGAGCTATTGAGCTCGCTGATCCAAT-GGAGAATGCCGGT-GCT-GCTTTGATTCGTGAGGTTGCCAGCAAGACAAAT-GACTCAGCAGGT-GATGGGACTACAACCGCATCTGTCCTGGCTCGTGAGATCATAAAATTGGGCCTGCTGAGTGTTACTTCAGGGGCAAACCCAGTATCTATCAAAAAGGGCATAGATAAGACCGTGCACAGTTTAGTTGAGGAACTTGAGAAGAAGTCAAGGCCTGTGAAGGGCAGTGGTGATATTAAAGCTGTTGCTGCCATATCTGCTGGAAATGATGACTTCGTCGGTACCATGATCGCTGAGGCTATTGACAAGGTTGGCCCTGATGGTGTTCTTTCGATCGAGTCATCATCATCTTGTGAGACCACCGTTGAAGTTGAAGAAGGAATGGAGATTGACAGAGGATATATCTCTCCTCAGTTTGTTACAAATCCTGAGAAGTCACTTGTTGAGTTTGAAAATGCTAGAATTCTTGTCACTGACCAGAAGATTTCTTCAATAAAAGAAATAATTCCTTTGCTGGAACAAACAACTCAACTAAGAGCACCACTCCTCATAATTGCGGAGGATGTAGCTGGTGAAGCTTTGGCAACTTTAGTTGTCAACAAGCTTAGAGGAATTCTCAATGTAGCTGCGATTAAAGCACCTGGCTTTGGTGAAAGGCGTAAAGCTCTTCTTCAGGACATCGCCATCGTTACAGGTGCTGAATTTCAAGCCAAAGATCTTGGTTTACTGGTGGAGAGTACAACCGTGGAGCAACTTGGCATAGCCCGGAAAGTGACAATCTCCCAGTCATCCACTACCATTATAGCAGATGTTGCCACCAAAGATGAGATCCAGGCAAGAATTGCACAGCTGAAGAGAGAGCTTTCTCAGACAGACTCAGCATATGACTCTGAGAAGTTGGCTGAGAGAATCGCAAAGCTTTCTGGCGGAGTTGCGGTTATAAAGGTAGGAGCTGCAACCGAGACAGAGCTTGAGGATCGCAAGCTTCGTATCGAGGATGCCAAGAATGCAACATTTGCTGCTATTGAGGAAGGTAT-AGTACCTGGAGGTGGTGCGGCCTATGTTCACCTGTCAAAATTTGTACCA-GCCATCAAGGAGAAGTTGGATGACCCTGAAGAGCGCCTTGGTGCTGATATCA-TTCAAAAGGCTCTAGT-GGCACC-GGCA-GCACTAATAGCACAC-AATGCTGGAGTTGAA-GGGGAAGTGATTGTAGAAAAGATCAA-GGAGAGTGAATGGGAGGTTGGCTACAA-TGCGATGGCTGACAGACACGAGAACTTGGTACA-GGCTGGTGTGATTGACCCTGCA-AAGGTGA-CA-AGATGTGCGTTGCAAAACGCAGCCTCGGTGGCTGGAATGGTACTAACCACGCAAGCCATCGTTGTGGAGAAGCCA-AAGAAGAAGGCGTCGGCGGCTTCCGGGGCACCAGAAGGTTCTCTTGCCATGTGAAGGAGGTGATCATATCTCCCATTCTATTCTACCTGTGGTGTGTGATTTTGCTACTGCGTCGTAACAA-CAAAACAGTACA-AGATGTTTAGCAGAGGTAAACTTGTGAACAAGAAGAATAAATCAATCTAGTCCAAGTGAAGTGAGTAGCTGTGATGGTTTCCTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL OSC111241 [NTNTNCAACCAAAAAAAGTCNAATTCTGAAAACAAGAGAGAGATCACAGCAGCCGCCGCCATCGCCATCTCTCGGACGGAAACCCTAGACGAGCGACCATGGCCACCATGCCAAGCACTTGCGCCTCCTCCTCCTCCCTCTTCCTCCTCCTCCGCAGGGACAGGAGGAGCAGCAGGAGTNCCAGCNTCCCCGGACCCGCCCGCCGTTTGGGGGTTGTGCGCGCCTCCGCCAAGGAGATCGCCTTCGACCAGGGATCGCGATCCTCCCTCCAGGCNGGCGTCGAG ] [+] EMBL AY224481 [ gACAGCAGCCGCCGCCATCGCCATCTCTCGGACGGAAACCCTAGACGAGCGACCATGGCCACCATGCCAAGCACTTGCGCCTCCTCCTCCTCCCTCTTCCTCCTCCTCCGCAGGGACAGGAGGAGCAGCAGGAGTGCCAGCCTCCCCGGACCCGCCCGCCGTTTGGGGGTTGTGCGCGCCTCCGCCAAGGAGATCGCCTTCGACCAGGGATCGCGATCCTCCCTCCAGGCCGGCGTCGAGAAGCTCGCCGCCGCCGTCGCCGTCACCCTCGGTCCCAGAGGAAGAAATGTCGTCTTGGATGAGTTTGGGAGCCCCAAAGTGGTCAATGACGGAGTTACCATTGCTCGAGCTATTGAGCTCGCTGATCCAAT GGAGAATGCCGGT GCT GCTTTGATTCGTGAGGTTGCCAGCAAGACAAAT GACTCAGCAGGT GATGGGACTACAACCGCATCTGTCCTGGCTCGTGAGATCATAAAATTGGGCCTGCTGAGTGTTACTTCAGGGGCAAACCCAGTATCTATCAAAAAGGGCATAGATAAGACCGTGCACAGTTTAGTTGAGGAACTTGAGAAGAAGTCAAGGGCTGTGAAGGGCAGTGGTGATATTAAAGCTGAGGCTGCCATATGTGCTGGAAATGATGACTGCGCCGGTACC ] [+] EMBL CB669414 [ ctCCGCCGCCATCGCCATCTCTCGGACGGAAACCCTAGACGAGCGACCATGGCCACCATGCCAAGCACTTGCGCCTCCTCCTCCTCCCTCTTCCTCCTCCTCCGCAGGGACAGGAGGAGCAGCAGGAGTGCCAGCCTCCCCGGACCCGCCCGCCGTTTGGGGGTTGTGCGCGCCTCCGCCAAGGAGATCGCCTTCGACCAGGGATCGCGATCCTCCCTCCAGGCCGGCGTCGAGAAGCTCGCCGCCGCCGTCGCCGTCACCCTCGGTCCCAGAGGAAGAAATGTCGTCTTGGATGAGTTTGGGAGCCCCAAAGTGGTCAATGACGGAGTTACCATTGCTCGAGCTATTGAGCTCGCTGATCCAAT GGAGAATGCCGGT GCT GCTTTGATTCGTGAGGTTGCCAGCAAGACAAAT GACTCAGCAGGT GATGGGACTACAACCGCATCTGTCCTGGCTCGTGAGATCATAAAATTGGGCCTGCTGAGTGTTACTTCAGGGGCAAACCCAGTATCTATCAAAAAGGGCATAGATAAGACCGTGCACAGTTTAGTTGAGGAACTTGAGAAGAAGTCAAGGCCTGTGAAGGGCAGTGGTGATATTAAAGCTGTTGCTGCCATATCTGCTGGAAATGATGACTTCGTCGGTACCATGATCGCTGAGGCTATTGACAAGGTTGGCCCTGATGGTGTTCTTTCGATCGAGTCATCATCATCTTGTGAGACCACCGTTGAAGTTGAAGAAGGAATGGAGATTGACAGAGGA ] [+] EMBL C74910 [ CGCCATCGCCATCTCTCGGACGGAAACCCTAGACGAGCGACCATGGCCACCATGCCAAGCACTTGCGCCTCCTCCTCCTCCCTCTTCCTCCTCCTCCGCA GGACAGGAGGAGCAGCAGGAGTGCCAGCCTCCCCGGACCCGCCCGCCGTTTGGGGGTTGTGCGCGCCTCCGCCAAGGAGATCGCCTTCGACCAGGGATCGCGATCCTCCCTCCAGGCCGGCGTCGAGAAGCTCGCCGCCGCCGTCGCCGTCACCCTCGGTCCCAGAGGAAGAAATGTCGTCTTGGATGAGTTTGGGAGCCCCAAAGTGGTCAATGACGGAGTTACCATTGCTCGAGCTATTGAGCTCGCTGATCCAATGGGAGAATGCCGGTGGCTGGCTTTGATTCGTGAGGTTGCCAGCAAGACAAATGGACTCAGCAGGTGGATGGGACTACA ] [+] EMBL CA755820 [ CGCCATCTCTCGGACGGAAACCCTAGACGAGCGACCATGGCCACCATGCCAAGCACTTGCGCCTCCTCCTCCTCCCTCTTCCTCCTCCTCCGCAGGGACAGGAGGAGCAGCAGGAGTGCCAGCCTCCCCGGACCCGCCCGCCGTTTGGGGGTTGTGCGCGCCTCCGCCAAGGAGATCGCCTTCGACCAGGGATCGCGATCCTCCCTCCAGGCCGGCGTCGAGAAGCTCGCCGCCGCCGTCGCCGTCACCCTCGGTCCCAGAGGAAGAAATGTCGTCTTGGATGAGTTTGGGAGCCCCAAAGTGGTCAATGACGGAGTTACCATTGCTCGAGCTATTGAGCTCGCTGATCCAAT GGAGAATGCCGGT GCT GCTTTGATTCGTGAGGTTGCCAGCAAGACAAAT GACTCAGCAGGT GATGGGACTACNACCGCATCTGTCCTGGCTCGTGAGATCATAAAATTGGGCCTGCTGAGTGTTACTTCAGGGGCAAACCCAGTATCTATCANAAAGGGCATAGATNAGACCGTGCACAGTTTAGTTGAGGAACTTGAGAAGAAGTCAAGGCCTGTGAAGGGCAGTGGTGATATTAAAGCTGTTGCT ] [+] EMBL CB638925 [ CGGACGGAAACCCTAGACGAGCGACCATGGCCACCATGCCAAGCACTTGCGCCTCCTCCTCCTCCCTCTTCCTCCTCCTCCGCAGGGACAGGAGGAGCAGCAGGAGTGCCAGCCTCCCCGGACCCGCCCGCCGTTTGGGGGTTGTGCGCGCCTCCGCCAAGGAGATCGCCTTCGACCAGGGATCGCGATCCTCCCTCCAGGCCGGCGTCGAGAAGCTCGCCGCCGCCGTCGCCGTCACCCTCGGTCCCAGAGGAAGAAATGTCGTCTTGGATGAGTTTGGGAGCCCCAAAGTGGTCAATGACGGAGTTACCATTGCTCGAGCTATTGAGCTCGCTGATCCAAT GGAGAATGCCGGT GCT GCTTTGATTCGTGAGGTTGCCAGCAAGACAAAT GACTCAGCAGGT GATGGGACTACAACCGCATCTGTCCTGGCTCGTGAGATCATAAAATTGGGCCTGCTGAGTGTTACTTCAGGGGCAAACCCAGTATCTATCAAAAAGGGCATAGATAAGACCGTGCACAGTTTAGTT ] [+] EMBL CB620498 [ TCTTGGCCCTTTATGGGAGCCCCAAAGTGGTCAATGACGGAGTTACCATTGCTCGAGCTATTGAGCTCGCTGATCCAAT GGAGAATGCCGGT GCT GCTTTGATTCGTGAGGTTGCCAGCAAGACAAAT GACTCAGCAGGT GATGGGACTACAACCGCATCTGTCCTGGCTCGTGAGATCATAAAATTGGGCCTGCTGAGTGTTACTTCAGGGGCAAACCCAGTATCTATCAAAAAGGGCATAGATAAGACCGTGCACAGTTTAGTTGAGGAACTTGAGAAGAAGTCAAGGCCTGTGAAGGGCAGTGGTGATATTAAAGCTGTTGCTGCCATATCTGCTGGAAATGATGACTTCGTCGGTACCATGATCGCTGAGGCTATTGACAAGGTTGGCCCTGATGGTGTTCTTTCGATCGAGTCATCATCATCTTTTGAGACCACCGTTGAAGTTGAAGAAGGAATGGAGATTGACAGAGGATATATCTCTCCTCAGTTTGTTACAAATCCTGAGAAGTCACTTGTTGAGTTTGAAAATGCTAGAATTCTTGTCACTGACCAGAAGATTTCTTCAATAAAAGAAATAATTCCTTTGCTGGAACAAACAACTCAACTAAGAGCACCACTCCTCATAATTGCGGAGGATGTAGCTGGTGAAGCTTTGGCAACTTTAGTTGTCAACAAGCTTAGAGGAATTCTCAATGTAGCTGCGATTAAAGCACCTGGCTTTGGTGAAAGGCGTAAAGCTCTTCTTCAGGACATC ] [+] EMBL AK061901 [ CTTTGCTGGAACAAACAACTCAACTAAGAGCACCACTCCTCATAATTGCGGAGGATGTAGCTGGCGAAGCTTTGGCAACTTTAGTTGTCAACAAGCTTAGAGGAATTCTCAATGTAGCTGCGATTAAAGCACCTGGCTTTGGTGAAAGGCGTAAGGCTCTTCTTCAGGACATCGCCATCGTTACAGGTGCTGAATTTCAAGCCAAAGATCTTGGTTTACTGGTGGAGAGTACAACCGTGGAGCAACTTGGCATAGCCCGGAAAGTGACAATCTCCCAGTCATCCACTACCATTATAGCAGATGTTGCCACCAAAGATGAGATCCAGGCAAGAATTGCACAGCTGAAGAGAGAGCTTTCTCAGACAGACTCAGCATATGACTCTGAGAAGTTGGCTGAGAGAATCGCAAAGCTTTCTGGCGGAGTTGCGGTTATAAAGGTAGGAGCTGCAACCGAGACAGAGCTTGAGGATCGCAAGCTTCGTATCGAGGATGCCAAGAATGCAACATTTGCTGCTATTGAGGAAGGTAT AGTACCTGGAGGTGGTGCGGCCTATGTTCACCTGTCAAAATTTGTACCA GCCATCAAGGAGAAGTTGGATGACCCTGAAGAGCGCCTTGGTGCTGATATCA TTCAAAAGGCTCTAGT GGCACC GGCA GCACTAATAGCACAC AATGCTGGAGTTGAA GGGGAAGTGATTGTAGAAAAGATCAA GGAGAGTGAATGGGAGGTTGGCTACAA TGCGATGGCTGACAGACACGAGAACTTGGTACA GGCTGGTGTGATTGACCCTGCA AAGGTGA CA AGATGTGCGTTGCAAAACGCAGCCTCGGTGGCTGGAATGGTACTAACCACGCAAGCCATCGTTGTGGAGAAGCCA AAGAAGAAGGCGTCGGCGGCTTCCGGGGCACCAGAAGGTTCTCTTGCCATGTGAAGGAGGTGATCATATCTCCCATTCTATTCTACCTGTGGTGTGTGATTTTGCTACTGCGTCGTAACAA CAAAACAGTACA AGATGTTTAGCAGAGGTAAACTTGTGAACAAGAAGAATAAATCAATCTAGTCCAAGTGAAGTGAGTAGCTGTGATGG ] [-] EMBL CB628010 [ ATAGCCCGGAAAGTGACAATCTCCCAGTCATCCACTACCATTATAGCAGATGTTGCCACCAAAGATGAGATCCAGGCAAGAATTGCACAGCTGAAGAGAGAGCTTTCTCAGACAGACTCAGCATATGACTCTGAGAAGTTGGCTGAGAGAATCGCAAAGCTTTCTGGCGGAGTTGCGGTTATAAAGGTAGGAGCTGCAACTGAGACAGAGCTTGAGGATCGCAAGCTTCGTATCGAGGATGCCAAGAATGCAACATTTGCTGCTATTGAGGAAGGTAT AGTACCTGGAGGTGGTGCGGCCTATGTTCACCTGTCAAAATTTGTACCA GCCATCAAGGAGAAGTTGGATGACCCTGAAGAGCGCCTTGGTGCTGATATCA TTCAAAAGGCTCTAGT GGCACC GGCA GCACTAATAGCACAC AATGCTGGAGTTGAA GGGGAAGTGATTGTAGAAAAGATCAA GGAGAGTGAATGGGAGGTTGGCTACAA TGCGATGGCTGACAGACACGAGAACTTGGTACA GGCTGGTGTGATTGACCCTGCA AAGGTGA CA AGATGTGCGTTGCAAAACGCAGCCTCGGTGGCTGGAATGGTACTAACCACGCAAGCCATCGTTGTGGAGAAGCCA AAGAAGAAGGCGTCGGCGGCTTCCGGGGCACCAGAAGGTTCTCTTGCCATGTGAAGGAGGTGATCATATCTCCCATTCTATTCTACCTGTGGTGTGTGATTTTGCTACTGCGTCGTAACAA CAAAACAGTACA AGATGTTTAGCAGAGGTAAACTGGTGAACAAGAAGAATAAATCAATCTAGTCCAAGT ] [+] EMBL AU031565 [ TGCCACCAAAGATGAGATCCAGGCAAGAATTGCACAGCTGAAGAGAGAGCTTTCTCAGACAGACTCAGCATATGACTCTGAGAAGTTGGCTGAGAGAATCGCAAAGCTTTCTGGCGGAGTTGCGGTTATAAAGGTAGGAGCTGCAACCGAGACAGAGCTTGAGGATCGCAAGCTTCGTATCGAGGATGCCAAGAATGCAACATTTGCTGCTATTGAGGAAGGTAT AGTACCTGGAGGTGGTGCGGCCTATGTTCACCTGTCAAAATTTGTACCA GCCATCAAGGAGAAGTTGGATGACCCTGAAGAGCGCCTTGGTGCTGATATCATTTCAAAAGGCTCTAGTGGGCACCGGGNAGGCACTAATAGCACACAAATGCTGGAGTTGAAGGGGGAAGTGATTGTAGAAAAGATCAAGGGAGAGTGAATGGGAGGTTGGCTANAATTGCGATGGGTGACAGAGACGAGAACTTGGTACA GGCTGGTGTGATTG ] [-] EMBL CB638926 [ ACATTTGCTGCTATTAAGGAAGGTAT AGTACCTGAAGGTGGTGCGGCCTATGTTCACCTGTCAAAATTTGTACCA GCCATCAAGGAGAAGTTGGATGACCCTGAAGAGCGCCTTGGTGCTGATATCA TTCAAAAGGCTCTAGT GGCACC GGCA GCACTAATAGCACAC AATGCTGGAGTTGAA GGGGAAGTGATTGTAGAAAAGATCAA GGAGAGTGAATGGGAGGTTGGCTACAA TGCGATGGCTGACAGACACGAGAACTTGGTACA GGCTGGTGTGATTGACCCTGCA AAGGTGA CA AGATGTGCGTTGCAAAACGCAGCCTCGGTGGCTGGAATGGTACTAACCACGCAAGCCATCGTTGTGGAGAAGCCA AAGAAGAAGGCGTCGGCGGCTTCCGGGGCACCAGAAGGTTCTCTTGCCATGTGAAGGAGGTGATCATATCTCCCATTCTATTCTACCTGTGGTGTGTGATTTTGCTACTGCGTCGTAACAA CAAAACAGTACA AGATGTTTAGCAGAGGTAAACTTGTGAACAAGAA ] [+] EMBL BI795404 [ CTATTGAGGAAGTTATAAGTACCTGGAGGTGGTCCGCCCTATGTTCACCTGTCAAAATTTGTACCACGCCATCAAGGAGAA TTGGATGACCCTGAAGAGCGCCTTGGT CTGATATCA TTCAAAAGGCTCTAGT GGCACC GCA GCACTAATAGCACAC ATGCTGGAGTTGAA GGGGAAGTGATTGTAGAAAAGATCAA GGAGAGTGAATGGGAGGTTGGCTAC A TGCGATGGCTGACAGACACGAGAACTTGGTACACGGCTGGTGTGATTGACCCTGCA AAGGTGA CA AGATGTGCGTT C AAACGCAGCCTCGGTGGCTGGAATGGTACTAACCACGCAAGCCATCGTTGTGGAGAAGCCC AAGAAGAAGGCGTCGGCGGCTTCCGGGGCACCAGAAGGTTCTCTTGCCATGTGAAGGAGGTGATCATATCTCCCATTCTATTCTACCTGTGGTGTGTGATTTTGCTACTGCGTCGTAAC A C AAACAGTAC AGATGTTTAGCAGAGGTAAACTTGTGAAC AGAAGAATAAATC ATCTAGTCCCAGTGAAaaaaaaa ] [+] EMBL AU095401 [ AAAAGGCTCTAGT GGCACC GGCA GCACTAATNGCACAC AATNCTGGAGTTGAA GGGGAAGTGATTGTAGAAAAGATCAA GGAGANTGAATGGGAGGTTGGCTACAA TGCGATGGCTGACAGACACGAGAACTTGGTACA GGCTGGTGTGATTGNCCCTGCA AAGGTGA CA AGATGTGCGTTGCAAAACGCAGCCTCGGTGGCTGGAATGGTACTAACCACGCAAGCCATCGTTGTGGAGAAGCCA AAGAAGAAGGCGTCGGCGGCTTCCGGGGCACCAGAAGGTTCTCTTGCCATGTGAAGGAGGTGATCATATCTCCCATTCTATTCTACCTGTGGTGTGTGATTTTGCTACTGCGTCGTAACAA CAAAACAGTACA AGATGTTTAGCAGAGGTAAACTTGTGAACAAGAAGAATAAATCAATCTAGTCCAAGTGAAGTGAaaaa ] [+] EMBL AU092169 [ AAAAGGCTCTAGT NGCACC GGCA GCACTAATAGCNCAC AATGCTGGAGTTGAA GGGGAANTGATTGTAGAAAAGATCNA GGAGAGTGAATGGGAGGTTGNCTACAA TGCGATGGCTGACAGACNCGAGAACTTGGTACA GGCTGGTGTGATTGACCCTGCA AAGGTGA CA AGATGTGCGTTGCAAAACGCAGCCTCGGTGGCTGGAATGGTACTNACCACGCAAGCCATCGTTGTGGAGAAGCCA AAGAAGAAGGCNTCGGCGGCTTCCGGGGCACCAGAAGGTTCTCTTGCCATGTGAAGGAGGTGATCATATCTCCCATTCTATTCTACCTGTGGTGTGTGATTTTGCTACTGCGTCGTAACAA CAAAACAGTACA AGATGTTTAGCAGAGGTAAACTTGTGAACAAGAAGAATAAATCAATCTAGTCCAAGTGAAGTGAGTAGCTGTGATGGTTTCCTTTTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL BI799470 [ GTGTGATTGACCCTGCACAAGGTGACCACAGATGTGCGTTGCCAAACGCAGCCTCGGTGGCTGGAATGGTACTAACCACGCAAGCCATCGTTGTGGAGAAGCCACAAGAAGAAGGCGTCGGCGGCTTCCGGGGCACCAGAAGGTTCTCTTGCCATGTGAAGGAGGTGATCATATCTCCCATTCTATTCTACCTGTGGTGTGTGATTTTGCTACTGCGTCGTAACAACCAAACCAGTACACAGATGTTTACCAGAGGTAAACTTGTGAACCAGAAGAATAAAaaaaaaa ] [+] EMBL CB678742 [ TGCAACACGCAGCCTCGGTGGCTGGAATGGTACTAACCACGCAAGCCATCGTTGTGGAGAAGCCA AAGAAGAAGGCGTCGGCGGCTTCCGGGGCACCAGAAGGTTCTCTTGCCATGTGAAGGAGGTGATCATATCTCCCATTCTATTCTACCTGTGGTGTGTGATTTTGCTACTGCGTCGTAACAA CAAAACAGTACA AGATGTTTAGCAGAGGTAAACTTGTGAACAAGAAGAATAAATCAATCTAGTCCAAGTGAAGTGAGTAGCTG ] [+] EMBL BI797692 [ GGGGCACCAGAAGGTTCTCTTGCCATGTGAAGGAGGTGATCATATCTCCCATTCTATTCTACCTGTGGTGTGTGATTTTGCTACTGCGTCGTAAC A C AAACAGTACA AGATGTTTAGCAGAGGTAAACTTGTGAACAAGAAGAATAAATCAATCTAGTCCAAaa ] consensusID : consensus_15369#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 842 fasta sequence [GTATTTTTGAGGGTTTGGTTTCAACCAAAAAAAGTCCAAATCTGAAAACAAGAGAGAGATCACAGCAGCCGCCGCCATCGCCATCTCTCGGACGGAAACCCTAGACGAGCGACCATGGCCACCATGCCAAGCACTTGCGCCTCCTCCTCCTCCCTCTTCCTCCTCCTCCGCAAGGACAGGAGGAGCAGCAGGAGTGCCAGCCTCCCCGGACCCGCCCGCCGTTTGGGGGTTGTGCGCGCCTCCGCCAAGGAGATCGCCTTCGACCAGGGATCGCGATCCTCCCTCCAGGCCGGCGTCGAGAAGCTCGCCGCCGCCGTCGCCGTCACCCTCGGTCCCAGAGGTTCTTACTTCCTTACCCTTTCCTCAAATACTAGTCGCTGTACACCATTTGTCCCTTGATCTTGTTGGTTTCTTTCTGTATGCACCTTATTAAGCCTTTTGTCCTTTTTTTTCATTCTGCTGCAGGCAGTGTCTGACTAATTCTTCTTGTGGTATTGTAGGAAGAAATGTCGTCTTGGATGAGTTTGGGAGCCCCAAAGTGGTCAATGACGGAGTTACCATTGCTCGAGCTATTGAGCTCGCTGATCCAATGGAGAATGCCGGTGCTGCTTTGATTCGTGAGGTTGCCAGCAAGACAAATGACTCAGCAGGTGATGGGACTACAACCGCATCTGTCCTGGCTCGTGAGATCATAAAATTGGGCCTGCTGAGTGTTACTTCAGGGGCAAACCCAGTATCTATCAAAAAGGGCATAGATAAGACCGTGCACAGTTTAGTTGACGAACTTGAGAAGAAGTCAAGGCCTGTGAAGGGCAGTGGTGATATTAAAGCTGTTGCTGCCA] [+] EMBL CB628009 [GTATTTTTGAGGGTTTGGTTTCAACCAAAAAAAGTCCAAATCTGAAAACAAGAGAGAGATCACAGCAGCCGCCGCCATCGCCATCTCTCGGACGGAAACCCTAGACGAGCGACCATGGCCACCATGCCAAGCACTTGCGCCTCCTCCTCCTCCCTCTTCCTCCTCCTCCGCAAGGACAGGAGGAGCAGCAGGAGTGCCAGCCTCCCCGGACCCGCCCGCCGTTTGGGGGTTGTGCGCGCCTCCGCCAAGGAGATCGCCTTCGACCAGGGATCGCGATCCTCCCTCCAGGCCGGCGTCGAGAAGCTCGCCGCCGCCGTCGCCGTCACCCTCGGTCCCAGAGGTTCTTACTTCCTTACCCTTTCCTCAAATACTAGTCGCTGTACACCATTTGTCCCTTGATCTTGTTGGTTTCTTTCTGTATGCACCTTATTAAGCCTTTTGTCCTTTTTTTTCATTCTGCTGCAGGCAGTGTCTGACTAATTCTTCTTGTGGTATTGTAGGAAGAAATGTCGTCTTGGATGAGTTTGGGAGCCCCAAAGTGGTCAATGACGGAGTTACCATTGCTCGAGCTATTGAGCTCGCTGATCCAATGGAGAATGCCGGTGCTGCTTTGATTCGTGAGGTTGCCAGCAAGACAAATGACTCAGCAGGTGATGGGACTACAACCGCATCTGTCCTGGCTCGTGAGATCATAAAATTGGGCCTGCTGAGTGTTACTTCAGGGGCAAACCCAGTATCTATCAAAAAGGGCATAGATAAGACCGTGCACAGTTTAG ] [+] EMBL CB679392 [ CGCCCTCATCGCCATCTCTCGGACGGAAACCCTAGACGAGCGACCATGGCCACCATGCCAAGCACTTGCGCCTCCTCCTCCTCCCTCTTCCTCCTCCTCCGCAGGGACAGGAGGAGCAGCAGGAGTGCCAGCCTCCCCGGACCCGCCCGCCGTTTGGGGGTTGTGCGCGCCTCCGCCAAGGAGATCGCCTTCGACCAGGGATCGCGATCCTCCCTCCAGGCCGGCGTCGAGAAGCTCGCCGCCGCCGTCGCCGTCACCCTCGGTCCCAGAGGTTCTTACTTCCTTACCCTTTCCTCAAATACTAGTCGCTGTACACCATTTGTCCCTTGATCTTGTTGGTTTCTTTCTGTATGCACCTTATTAAGCCTTTTGTCCTTTTTTTTCATTCTGCTGCAGGCAGTGTCTGACTAATTCTTCTTGTGGTATTGTAGGAAGAAATGTCGTCTTGGATGAGTTTGGGAGCCCCAAAGTGGTCAATGACGGAGTTACCATTGCTCGAGCTATTGAGCTCGCTGATCCAATGGAGAATGCCGGTGCTGCTTTGATTCGTGAGGTTGCCAGCAAGACAAATGACTCAGCAGGTGATGGGACTACAACCGCATCTGTCCTGGCTCGTGAGATCATAAAATTGGGCCTGCTGAGTGTTACTTCAGGGGCAAACCCAGTATCTATCAAAAAGGGCATAGATAAGACCGTGCACAGTTTAGTTGACGAACTTGAGAAGAAGTCAAGGCCTGTGAAGGGCAGTGGTGATATTAAAGCTGTTGCTGCCA] consensusID : consensus_15369#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 437 fasta sequence [TTCTTGTGGGCACCGNTGANATNATTGTCACACANGTTGGTGTTGNAGGGGGANTGCTTNTTGGAAAGTTGCAGGNGGGTNNATNGGTGGTTGGCTACATGCGNTGGCTGACANCACGAGAACTTGGTACAGGCTGGTGTGATTGACCCTGNAAAGGTGACAAGATGTNCGTTGCAAAACGCAGCCTNGGTNGCTGGAATGGTACTAACCACGCAAGCCATCGTTNTGGAGAAGCCAATGAAGAAGGCGTCGGCGGCTTCCGGGGCACCAGAAGGTTCTCTTNCCATGTGAGGAGGTGATCATATCTCCCATTCTATTCTACCTGTGGTGTGTGTTTTGCTACTGCGTCGTAACAACAAAACAGTACAAGNTNTTTAGGCAGAGGTAAACTTGTGAACAAGAAGNAATAAATCAATCTAGTCCAAGTGAANNAANAA] [+] EMBL AA751470 [TTCTTGTGGGCACCGNTGANATNATTGTCACACANGTTGGTGTTGNAGGGGGANTGCTTNTTGGAAAGTTGCAGGNGGGTNNATNGGTGGTTGGCTACATGCGNTGGCTGACANCACGAGAACTTGGTACAGGCTGGTGTGATTGACCCTGNAAAGGTGACAAGATGTNCGTTGCAAAACGCAGCCTNGGTNGCTGGAATGGTACTAACCACGCAAGCCATCGTTNTGGAGAAGCCAATGAAGAAGGCGTCGGCGGCTTCCGGGGCACCAGAAGGTTCTCTTNCCATGTGAGGAGGTGATCATATCTCCCATTCTATTCTACCTGTGGTGTGTGTTTTGCTACTGCGTCGTAACAACAAAACAGTACAAGNTNTTTAGGCAGAGGTAAACTTGTGAACAAGAAGNAATAAATCAATCTAGTCCAAGTGAANNAANAA] consensusID : consensus_15369#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 223 fasta sequence [ACTAATAGCACACAATGCTGGAGTTGAAGGGGAAGTGATTGTAGAAAAGATCAAGGAGAGTGAATGGGAGGTTGGCTACAATGCGATGGCTGACAGACACGAGAACTTGGTACAGGCTGGTGTGATTGTCCCTGCAAAGGTGATAAGATGTGCGTTCGAAAACCTAGGCCTCGTGCTGATGCACTACACCGAGTATCGTGTGAGACGAAGAGAGCTCGCGTCG] [+] EMBL AA751149 [ACTAATAGCACACAATGCTGGAGTTGAAGGGGAAGTGATTGTAGAAAAGATCAAGGAGAGTGAATGGGAGGTTGGCTACAATGCGATGGCTGACAGACACGAGAACTTGGTACAGGCTGGTGTGATTGTCCCTGCAAAGGTGATAAGATGTGCGTTCGAAAACCTAGGCCTCGTGCTGATGCACTACACCGAGTATCGTGTGAGACGAAGAGAGCTCGCGTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15369#2 ------------------------------------------------------------ consensus_15369#3 ------------------------------------------------------------ consensus_15369#0 NTNTNCAACCAAAAAAAGTCNAATTCTGAAAACAAGAGAGAGATCACAGCAGCCGCCGCC 60 consensus_15369#1 ------------------------------------------------------------ consensus_15369#2 ------------------------------------------------------------ consensus_15369#3 ------------------------------------------------------------ consensus_15369#0 ATCGCCATCTCTCGGACGGAAACCCTAGACGAGCGACCATGGCCACCATGCCAAGCACTT 120 consensus_15369#1 ------------------------------------------------------------ consensus_15369#2 ------------------------------------------------------------ consensus_15369#3 ------------------------------------------------------------ consensus_15369#0 GCGCCTCCTCCTCCTCCCTCTTCCTCCTCCTCCGCAGGGACAGGAGGAGCAGCAGGAGTG 180 consensus_15369#1 ------------------------------------------------------------ consensus_15369#2 ------------------------------------------------------------ consensus_15369#3 ------------------------------------------------------------ consensus_15369#0 CCAGCCTCCCCGGACCCGCCCGCCGTTTGGGGGTTGTGCGCGCCTCCGCCAAGGAGATCG 240 consensus_15369#1 ------------------------------------------------------------ consensus_15369#2 ------------------------------------------------------------ consensus_15369#3 ------------------------------------------------------------ consensus_15369#0 CCTTCGACCAGGGATCGCGATCCTCCCTCCAGGCCGGCGTCGAGAAGCTCGCCGCCGCCG 300 consensus_15369#1 ------------------------------------------------------------ consensus_15369#2 ------------------------------------------------------------ consensus_15369#3 ------------------------------------------------------------ consensus_15369#0 TCGCCGTCACCCTCGGTCCCAGAGGAAGAAATGTCGTCTTGGATGAGTTTGGGAGCCCCA 360 consensus_15369#1 ------------------------------------------------------------ consensus_15369#2 ------------------------------------------------------------ consensus_15369#3 ------------------------------------------------------------ consensus_15369#0 AAGTGGTCAATGACGGAGTTACCATTGCTCGAGCTATTGAGCTCGCTGATCCAATGGAGA 420 consensus_15369#1 ------------------------------------------------------------ consensus_15369#2 ------------------------------------------------------------ consensus_15369#3 ------------------------------------------------------------ consensus_15369#0 ATGCCGGTGCTGCTTTGATTCGTGAGGTTGCCAGCAAGACAAATGACTCAGCAGGTGATG 480 consensus_15369#1 ------------------------------------------------------------ consensus_15369#2 ------------------------------------------------------------ consensus_15369#3 ------------------------------------------------------------ consensus_15369#0 GGACTACAACCGCATCTGTCCTGGCTCGTGAGATCATAAAATTGGGCCTGCTGAGTGTTA 540 consensus_15369#1 ------------------------------------------------------------ consensus_15369#2 ------------------------------------------------------------ consensus_15369#3 ------------------------------------------------------------ consensus_15369#0 CTTCAGGGGCAAACCCAGTATCTATCAAAAAGGGCATAGATAAGACCGTGCACAGTTTAG 600 consensus_15369#1 ------------------------------------------------------------ consensus_15369#2 ------------------------------------------------------------ consensus_15369#3 ------------------------------------------------------------ consensus_15369#0 TTGAGGAACTTGAGAAGAAGTCAAGGCCTGTGAAGGGCAGTGGTGATATTAAAGCTGTTG 660 consensus_15369#1 ------------------------------------------------------------ consensus_15369#2 ------------------------------------------------------------ consensus_15369#3 ------------------------------------------------------------ consensus_15369#0 CTGCCATATCTGCTGGAAATGATGACTTCGTCGGTACCATGATCGCTGAGGCTATTGACA 720 consensus_15369#1 ------------------------------------------------------------ consensus_15369#2 ------------------------------------------------------------ consensus_15369#3 ------------------------------------------------------------ consensus_15369#0 AGGTTGGCCCTGATGGTGTTCTTTCGATCGAGTCATCATCATCTTGTGAGACCACCGTTG 780 consensus_15369#1 ------------------------------------------------------------ consensus_15369#2 ------------------------------------------------------------ consensus_15369#3 ------------------------------------------------------------ consensus_15369#0 AAGTTGAAGAAGGAATGGAGATTGACAGAGGATATATCTCTCCTCAGTTTGTTACAAATC 840 consensus_15369#1 ------------------------------------------------------------ consensus_15369#2 ------------------------------------------------------------ consensus_15369#3 ------------------------------------------------------------ consensus_15369#0 CTGAGAAGTCACTTGTTGAGTTTGAAAATGCTAGAATTCTTGTCACTGACCAGAAGATTT 900 consensus_15369#1 ------------------------------------------------------------ consensus_15369#2 ------------------------------------------------------------ consensus_15369#3 ------------------------------------------------------------ consensus_15369#0 CTTCAATAAAAGAAATAATTCCTTTGCTGGAACAAACAACTCAACTAAGAGCACCACTCC 960 consensus_15369#1 ------------------------------------------------------------ consensus_15369#2 ------------------------------------------------------------ consensus_15369#3 ------------------------------------------------------------ consensus_15369#0 TCATAATTGCGGAGGATGTAGCTGGTGAAGCTTTGGCAACTTTAGTTGTCAACAAGCTTA 1020 consensus_15369#1 ------------------------------------------------------------ consensus_15369#2 ------------------------------------------------------------ consensus_15369#3 ------------------------------------------------------------ consensus_15369#0 GAGGAATTCTCAATGTAGCTGCGATTAAAGCACCTGGCTTTGGTGAAAGGCGTAAAGCTC 1080 consensus_15369#1 ------------------------------------------------------------ consensus_15369#2 ------------------------------------------------------------ consensus_15369#3 ------------------------------------------------------------ consensus_15369#0 TTCTTCAGGACATCGCCATCGTTACAGGTGCTGAATTTCAAGCCAAAGATCTTGGTTTAC 1140 consensus_15369#1 ------------------------------------------------------------ consensus_15369#2 ------------------------------------------------------------ consensus_15369#3 ------------------------------------------------------------ consensus_15369#0 TGGTGGAGAGTACAACCGTGGAGCAACTTGGCATAGCCCGGAAAGTGACAATCTCCCAGT 1200 consensus_15369#1 ------------------------------------------------------------ consensus_15369#2 ------------------------------------------------------------ consensus_15369#3 ------------------------------------------------------------ consensus_15369#0 CATCCACTACCATTATAGCAGATGTTGCCACCAAAGATGAGATCCAGGCAAGAATTGCAC 1260 consensus_15369#1 ----------GTATTTTTGAGGGTTTGGTTTCAACCAAAAAAAGTCCAAATCTGAAAACA 50 consensus_15369#2 ------------------------------------------------------------ consensus_15369#3 ------------------------------------------------------------ consensus_15369#0 AGCTGAAGAGAGAGCTTTCTCAGACAGACTCAGCATATGACTCTGAGAAGTTGGCTGAGA 1320 consensus_15369#1 AGAGAGAGATCACAGCAGCCGCCGCCATCGCCATCTCTCGGACGGAAACCCTAGACGAGC 110 consensus_15369#2 ------------------------------------------------------------ consensus_15369#3 ------------------------------------------------------------ consensus_15369#0 GAATCGCAAAGCTTTCTGGCGGAGTTGCGGTTATAAAGGTAGGAGCTGCAACCGAGACAG 1380 consensus_15369#1 GACCATGGCCACCATGCCAAGCACTTGCGCCTCCTCCTCCTCCCTCTTCCTCCTCCTCCG 170 consensus_15369#2 ------------------------------------------------------------ consensus_15369#3 ------------------------------------------------------------ consensus_15369#0 AGCTTGAGGATCGCAAGCTTCGTATCGAGGATGCCAAGAATGCAACATTTGCTGCTATTG 1440 consensus_15369#1 CAAGGACAGGAGGAGCAGCAGGAGTGCCAGCCTCCCCGGACCCGCCCGCCGTTTGGGGGT 230 consensus_15369#2 ------------------------------------------------------------ consensus_15369#3 ------------------------------------------------------------ consensus_15369#0 AGGAAGGTATAGTACCTGGAGGTGGTGCGGCCTATGTTCACCTGTCAAAATTTGTACCAG 1500 consensus_15369#1 TGTGCGCGCCTCCGCCAAGGAGATCGCCTTCGACCAGGGATCGCGATCCTCCCTCCAGGC 290 consensus_15369#2 -----------------------------------------------------------T 1 consensus_15369#3 ------------------------------------------------------------ consensus_15369#0 CCATCAAGGAGAAGTTGGATGACCCTGAAGAGCGCCTTGGTGCTGATATCATTCAAAAGG 1560 consensus_15369#1 CGGCGTCGAGAAGCTCGCCGCCGCCGTCGCCGTCACCCTCGGTCCCAGAGGTTCTTACTT 350 consensus_15369#2 TCTTGTGGGCACCGNTGANATNATTGTC-ACACAN-GTTGGTGTTGNAGGGGGANTGCTT 59 consensus_15369#3 -------------------ACTAATAGC-ACACAATGCTGGAGTTGAAGGGGAAGTGATT 40 consensus_15369#0 CTCTAGTGGCACCGGCAGCACTAATAGC-ACACAATGCTGGAGTTGAAGGGGAAGTGATT 1619 consensus_15369#1 CCTTACCCTTTCCTCAAATACTAGTCGCTGTACACCATTTGTCCCTTGATCTTGTTGGTT 410 * * * * *** * * ** ** consensus_15369#2 NTTGGAAAGTTGCAGGNGGGTNNATNGGTGGTTGGCTACA-TGCGNTGGCTGACAN-CAC 117 consensus_15369#3 GTAGAAAAGATCAAGGAGAGTGAATGGGAGGTTGGCTACAATGCGATGGCTGACAGACAC 100 consensus_15369#0 GTAGAAAAGATCAAGGAGAGTGAATGGGAGGTTGGCTACAATGCGATGGCTGACAGACAC 1679 consensus_15369#1 TCTTTCTGTATGCACCTTATTAAGCCTTTTGTCCTTTTTTTTCATTCTGCTGCAGGCAGT 470 * * * ** * * **** consensus_15369#2 GAGAACTTGGTACAGGCTGGTGTGATTGACCCTGNAAAGGTGACAAGATGTNCGTTGCAA 177 consensus_15369#3 GAGAACTTGGTACAGGCTGGTGTGATTGTCCCTGCAAAGGTGATAAGATGTGCGTTCGAA 160 consensus_15369#0 GAGAACTTGGTACAGGCTGGTGTGATTGACCCTGCAAAGGTGACAAGATGTGCGTTGCAA 1739 consensus_15369#1 GTCTGACTAATTCTT-CTTGTGGTATTGTAGGAAGAAATGTCGTCTTGGATGAGTTTGGG 529 * * * * ** *** **** *** ** * *** consensus_15369#2 AACGCAGCCTNGGTNGCTGGAATGGTACTAACCACGCAAGCCATCGTTNTGGAGAAGCCA 237 consensus_15369#3 AACCTAGGCCTCGTGC------TGATGC--ACTACACCGAGTATCGTGT----GAGACGA 208 consensus_15369#0 AACGCAGCCTCGGTGGCTGGAATGGTACTAACCACGCAAGCCATCGTTGTGGAGAAGCCA 1799 consensus_15369#1 AGCCCCAAAGTGGTCAATGACGGAGTTACCATTGCTCGAGCTATTGAGCTCGCTGATCCA 589 * * ** * * * * ** * * * consensus_15369#2 ATGAAGAAGGCGTCGGCGGCTTCCGGGGCACCAGAAGGTTCTCTTNCCATGTGA-GGAGG 296 consensus_15369#3 AGAGAGCTCGCGTCG--------------------------------------------- 223 consensus_15369#0 AAGAAGAAGGCGTCGGCGGCTTCCGGGGCACCAGAAGGTTCTCTTGCCATGTGAAGGAGG 1859 consensus_15369#1 ATGGAGAATGCCGGTGCTGCTTT-GATTCGTGAGGTTGCCAGCAAGACAAATGACTCAGC 648 * ** ** consensus_15369#2 TGATCATAT--CTCCCATTCTATTCTACCTGTGGTGTGTG-TTTTGCTACTGCGTCGTAA 353 consensus_15369#3 ------------------------------------------------------------ consensus_15369#0 TGATCATAT--CTCCCATTCTATTCTACCTGTGGTGTGTGATTTTGCTACTGCGTCGTAA 1917 consensus_15369#1 AGGTGATGGGACTACAACCGCATCTGTCCTGGCTCGTGAGATCATAAAATTGGGCCTGCT 708 consensus_15369#2 CAACAAAACAGTACAAGNTNTTTAGGCAGAGGTAAACTTGTGAACAAGAAGNAATAAATC 413 consensus_15369#3 ------------------------------------------------------------ consensus_15369#0 CAACAAAACAGTACAAGATGTTTAG-CAGAGGTAAACTTGTGAACAAGAAGAA-TAAATC 1975 consensus_15369#1 GAGTGTTACTTCAGGGGCAAACCCAGTATCTATCAAAAAGGGCATAGATAAGACCGTGCA 768 consensus_15369#2 AATCTAGTCCAAGTGAANNAANAA------------------------------------ 437 consensus_15369#3 ------------------------------------------------------------ consensus_15369#0 AATCTAGTCCAAGTGAAGTGAGTAGCTGTGATGGTTTCCTTTTGAAAAAAAAAAAAAAAA 2035 consensus_15369#1 CAGTTTAGTTGACGAACTTGAGAAGAAGTCAAGGCCTGTGAAGGGCAGTGGTGATATTAA 828 consensus_15369#2 -------------- consensus_15369#3 -------------- consensus_15369#0 AAAAAAAAAAAAA- 2048 consensus_15369#1 AGCTGTTGCTGCCA 842 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||