These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15374#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 947 fasta sequence [TTTTTGGATTATGCCTGTTTTTGTTCAGTGGTCGTCAGCACTCAGCACAAAGTACACAAATCTCATAGATGTGTCACTTGCAACCTGCATATCAACTGCAATGTCTCATCTGAAATTGTTTGCTTGCTCTTCTGAAGAACATTCTCTAGCGAGAATAGCAAGGAGTGATACAAATGTGAAGCACTTCTCTGAACTACTACTATCAAGAAGAGGGCTCAGAAGCCTCGTCAGATTCAGAGTTCTCTGAGGTCTCATCAGATTCAGGCTTCTCAAGCTGCAGAACAACACTGAAACTGAATGATGAACCCGGCGTAAACGATGACTCGAGCTCTTCTTCTGACTGGGTTGTCTTGATTTCAGGGTTCACCTTCAGGTTTTCCTTCTTTACAAAATCACCAACAGTGATGCTGAGTATTTCCTGAAGAACGAAC-TTGGTGACCCGGCTTTTGCCAAGCATCTGCAGCAGAATGCTGCTTGGTATATTTGATGTTCTCCCTCCTTTGGACTTCCNTAAAACCTGGAACTGGCGGTGCATCACGAGCCAAGCTTGTCAAGGCTTCATCAAACACCTTCTGTGTCGCCTTTCCAGGCAAATCCACTCTTACATTGATCGTTTCATCGTCGCGTGACACAACGGANTGTCTTGGCGTTCTGCAGCGACAAGCCACTCTTCCTCTCGTCCTCAGCAACCGATGAGCCCCCGCCTGATCCAACTGCCGACACTGGCAGGACAGGACGACTTCTCGCGCTGGAAACAAGCAACCCGTGGGTAGGAATCTGACACTTGCAAGCATTGCAGTTCTTGATATGGACATGAACCGGATAGATTGCCTGGAAGTGGCCGTGGCATTTTGGCCTGAACCGAAGCTTCGGAAGGGTCGCCGCTGACGCCATGGATGCGGCTTGCTCTGTCCTCTTCTCAGCTCTTTCTACTCCTTCAGTCCGTG] [+] EMBL CF310661 [TTTTTGGATTATGCCTGTTTTTGTTCAGTGGTCGTCAGCACTCAGCACAAAGTACACAAATCTCATAGATGTGTCACTTGCAACCTGCATATCAACTGCAATGTCTCATCTGAAATTGTTTGCTTGCTCTTCTGAAGAACATTCTCTAGCGAGAATAGCAAGGAGTGATACAAATGTGAAGCACTTCTCTGAACTACTACTATCAAGAAGAGGGCTCAGAAGCCTCGTCAGATTCAGAGTTCTCTGAGGTCTCATCAGATTCAGGCTTCTCAAGCTGCAGAACAACACTGAAACTGAATGATGAACCCGGCGTAAACGATGACTCGAGCTCTTCTTCTGACTGGGTTGTCTTGATTTCAGGGTTCACCTTCAGGTTTTCCTTCTTTACAAAATCACCAACAGTGATGCTGAGTATTTCCTGAAGAACGAAC TTGGTGACCCGGCTTTTGCCAAGCATCTGCAGCAGAAT ] [-] EMBL CF281866 [ TATTTCCTGAAGAACGAACTTTGGTGACCCGGCTTTTGCCAAGCATCTGCAGCAGAATGCTGCTTGGTATATTTGATGTTCTCCCTCCTTTGGACTTCCNTAAAACCTGGAACTGGCGGTGCATCACGAGCCAAGCTTGTCAAGGCTTCATCAAACACCTTCTGTGTCGCCTTTCCAGGCAAATCCACTCTTACATTGATCGTTTCATCGTCGCGTGACACAACGGANTGTCTTGGCGTTCTGCAGCGACAAGCCACTCTTCCTCTCGTCCTCAGCAACCGATGAGCCCCCGCCTGATCCAACTGCCGACACTGGCAGGACAGGACGACTTCTCGCGCTGGAAACAAGCAACCCGTGGGTAGGAATCTGACACTTGCAAGCATTGCAGTTCTTGATATGGACATGAACCGGATAGATTGCCTGGAAGTGGCCGTGGCATTTTGGCCTGAACCGAAGCTTCGGAAGGGTCGCCGCTGACGCCATGGATGCGGCTTGCTCTGTCCTCTTCTCAGCTCTTTCTACTCCTTCAGTCCGTG] consensusID : consensus_15374#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 18 consensus length = 903 fasta sequence [TTTTTTTTTTTTTTTTTT--TGTGTCACTTGCAACCTGCATATCAACTGCAATGTCTCATCTGAAATTGTTTGCTTGCTCTTCTGAAGAACATTCTCTAGCGAGAATAGCAAGGAGTGATACAAATGTGAAGCACTTCTCTGAACTACTACTATCAAGAAGAGGGCTCAGAAGCCTCGTCAGATTCAGAGTTCTCTGAGGTCTCATCAGATTCAGGCTTCTCAAGCTGCAGAACAACACTGAAACTGAATGATGAACCCGGCGTAAACGATGACTCGAGCTCTTCTTCTGACTGG-GTTGTCTTGATTTCAGGGTTCACCTTCAGGTTTTCCTTCTTTACAAAATCACCAACAGTGATGCTGAGTATTTCCTGAAGAACGAACTTGGTGACCCGGCTTTTGCCAAGCATCTGCAGCAGAATGCTGCTTGGTATATTTGATGTTCTCCCTCCTTTGGAC--TTCCTAAAA-CCTGG-AACTGGC-GGTGCATCACG-AGCC-AAGC-TTGTC-AAGGCTTC-ATC-AAACA-CCTTCTGTGTCGCCTTTCCAGGCAAATCCACTCTTACATTGATCGTTTCATCGTCGCGTGACACAACGGATGTCTTGGCGTTCTGCAGCGACAAGCCACTCTTCCTCTCGTCCTCAGCAACCGATGAGCCCCCG---------CCTGATCCAACTGCCGACACTGGCAGGACAGGACGACTTCTCGCGCTGGAAACAAGCAACCCGTGGGTAGGAAT-CTGACACTTGCAAGCATTGCAGTTCTTGATATGGACATGAACCGGATAGATTGCCTGGAAGTGGCCGTGGCATTTTGGCCTGAACCGAAGCTTCGGAAGGGTCGCCGCTGACGCCATGGATGCGGCTTGCTCTGTCCTCTTCTCAGCTCGGGAAAACAGTTTCTACTCCTCAGTCCATG] [-] EMBL AU162961 [TTTTTTTTTTTTTTTTTTGATGTGTCACTTGCAACCTGCATATCAACTGCAATGTCTCATCTGAAATTGTTTGCTTGCTCTTCTGAAGAACATTCTCTAGCGAGAATAGCAAGGAGTGATACAAATGTGAAGCACTTCTCTGAACTACTACTATCAAGAAGAGGGCTCAGAAGCCTCGTCAGATTCAGAGTTCTCTGAGGTCTCATCAGATTCAGGCTTCTCAAGCTGCAGAACAACACTGAAACTGAATGATGAACCCGGCGTAAACGATGACTCGAGCTCTTCTTCTGACTGG GTTGTCTTGATTTCAGGGNTCACCTTCAGGTTTTCCT ] [+] EMBL CF335278 [ TTTTTTTTTTTTTGA TGTGTCACTTGCAACCTGCATATCAACTGCAATGTCTCATCTGAAATTGTTTGCTTGCTCTTCTGAAGAACATTCTCTAGCGAGAATAGCAAGGAGTGATACAAATGTGAAGCACTTCTCTGAACTACTACTATCAAGAAGAGGGCTCAGAAGCCTCGTCAGATTCAGAGTTCTCTGAGGTCTCATCAGATTCAGGCTTCTCAAGCTGCAGAACAACACTGAAACTGAATGATGAACCCGGCGTAAACGATGACTCGAGCTCTTCTTCTGACTGG GTTGTCTTGATTTCAGGGTTCACCTTCAGGTTTTCCTTCTTTACAAAATCACCAACAGTGATGCTGAGTATTTCCTGAAGAACGAACTTGGTGACCCGGCTTTTGCCAAGCATCTGCAGCAGAATGCTGCTTGGTATATTTGATGTTCTCCCTCCTTTGGAC TTCCTAAAA CCTGG AACTGGC GGTGCATCACG AGCC AAGC TTGTC AAGGCTTC ATC AAACA CCTTCTGTGTCGCCTTTCCAGGCAAATCCACTCT ] [+] EMBL CF337119 [ TTTTTTTTTTTAAA TGTGTCACTTGCAACCTGCATATCAACTGCAATGTCTCATCTGAAATTGTTTGCTTGCTCTTCTGAAGAACATTCTCTAGCGAGAATAGCAAGGAGTGATACAAATGTGAAGCACTTCTCTGAACTACTACTATCAAGAAGAGGGCTCAGAAGCCTCGTCAGATTCAGAGTTCTCTGAGGTCTCATCAGATTCAGGCTTCTCAAGCTGCAGAACAACACTGAAACTGAATGATGAACCCGGCGTAAACGATGACTCGAGCTCTTCTTCTGACTGG GTTGTCTTGATTTCAGGGTTCACCTTCAGGTTTTCCTTCTTTACAAAATCACCAACAGTGATGCTGAGTATTTCCTGAAGAACGAACTTGGTGACCCGGCTTTTGCCAAGCATCTGCAGCAGAATGCTGCTTGGTATATTTGATGTTCTCCCTCCTTTGGAC TTCCTAAAA CCTGG AACTGGC GGTGCATCACG AGCC AAGC ] [+] EMBL CF337390 [ TTTT TTTGTCACTTGCAACCTGCATATCAACTGCAATGTCTCATCTGAAATTGTTTGCTTGCTCTTCTGAAGAACATTCTCTAGCGAGAATAGCAAGGAGTGATACAAATGTGAAGCACTTCTCTGAACTACTACTATCAAGAAGAGGGCTCAGAAGCCTCGTCAGATTCAGAGTTCTCTGAGGTCTCATCAGATTCAGGCTTCTCAAGCTGCAGAACAACACTGAAACTGAATGATGAACCCGGCGTAAACGATGACTCGAGCTCTTCTTCTGACTGGNGTTGTCTTGATTTCAGGGTTCACCTTCAGGTTTTCCTTCTTTACAAAATCACCAACAGTGATGCTGAGTATTTCCTGAAGAACGAACTTGGTGACCCGGCTTTTGCCAAGCATCTGCAGCAGAATGCTGCTTGGTATATTTGATGTTCTCCCTCCTTTGGAC TTCC ] [+] EMBL CA759754 [ TT TTTTTCACTTGCAACCTGCATATCAACTGCAATGTCTCATCTGAAATTGTTTGCTTGCTCTTCTGAAGAACATTCTCTAGCGAGAATAGCAAGGAGTGATACAAATGTGAAGCACTTCTCTGAACTACTACTATCAAGAAGAGGGCTCAAAAGCCTCGCCAGATTCAGAGTTCTCTGAGGTCTCATCAGATTCAGGCTTCTCAAGCTGCAAAACAACACTGAAACTGAATGATGAACCCGGCGTAAACGACGACTCGAGCTCTTCTTCTGACTGG GTTGTCTTGATTTCAGGGTTCACCTTCAGGTTTTCCTTCTTTACAAAATCACCAACAGTGATGCTGAGTATTTCCTGAAGAACGAACTTGGTGACCCGGCTTTTGCCAAGCATCTGCAGCAGAATGCTGCTTGGTATATTTGATGTTCTCCCTCCTTTGGAC TTCCTAAAA CCTGG AACTGGC GGTGCATCACG AGCC AAGC TTGTC AAGGCTTC ATC AAACA CCTTCTGTGTCGCCTTTCCAGGCAAATCCACTCTTACATTGATCGTTTCATCGTCGCGTGACACAACGGATGTCTTGGCGTTCTGCAGCGACAAGCCACTCTTCCTCTCGTCCTCAGCAACCGATGAGCCCCCGCCTGCATTTCCTGATCCAACTGCCGACACTGGCAGGACAGGACGACTTCTCGCGCTGGA ] [+] EMBL CB679295 [ ggCACTTGCAACCTGCATATCAACTGCAATGCCTTATCTGAAATTGTTTGCTTGCTCTTCTGAAGAACATTCTCTAGCGAGAATAGCAAGGAGTGATACAAATGTGAAGCACTTCTCTGAACTACTACTATCAAGAAGAGGGCTCAGAAGCCTCGTCAGATTCAGAGTTCTCTGAGGTCTCATCAGATTCAGGCTTCTCAAGCTGCAGAACAACACTGAAACTGAATGATGAACCCGGCGTAAACGATGACTCGAGCTCTTCTTCTGACTGG GTTGTCTTGATTTCAGGGTTCACCTTCAGGTTTTCCTTCTTTACAAAATCACCAACAGTGATGCTGAGTATTTCCTGAAGAACGAACTTGGTGACCCGGCTTTTGCCAAGCATCTGCAGCAGAATGCTGCTTGGTATATTTGATGTTCTCCCTCCTTTGGAC TTCCTAAAA CCTGG AACTGGC GGTGCATCACG AGCC AAGC TTGTC AAGGCTTC ATC AAACA CCTTCTGTGTCGCCTTTCCAGGCAAATCCACTCTTACATTGATCGTTTCATCGTCGCGTGACACAACGGATGTCTTGGCGTTCTGCAGCGACAAGCCACTCTTCCTCTCGTCCTCAGCAACCGATGAGCCCCCG CCTGATCCAACTGCCGACACTGGCAGGACAGGACGACTTCTCGCGCTGGAAACAAGCAACCCGTGGGTAGGAAT CTGACACTTGCAAGCATTGCAGTTCTTGA ] [-] EMBL AK067623 [ CTTGCAACCTGCATATCAACTGCAATGTCTCATCTGAAATTGTTTGCTTGCTCTTCTGAAGAACATTCTCTAGCGAGAATAGCAAGGAGTGATACAAATGTGAAGCACTTCTCTGAACTACTACTATCAAGAAGAGGGCTCAGAAGCCTCGTCAGATTCAGAGTTCTCTGAGGTCTCATCAGATTCAGGCTTCTCAAGCTGCAGAACAACACTGAAACTGAATGATGAACCCGGCGTAAACGATGACTCGAGCTCTTCTTCTGACTGG GTTGTCTTGATTTCAGGGTTCACCTTCAGGTTTTCCTTCTTTACAAAATCACCAACAGTGATGCTGAGTATTTCCTGAAGAACGAACTTGGTGACCCGGCTTTTGCCAAGCATCTGCAGCAGAATGCTGCTTGGTATATTTGATGTTCTCCCTCCTTTGGAC TTCCTAAAA CCTGG AACTGGC GGTGCATCACG AGCC AAGC TTGTC AAGGCTTC ATC AAACA CCTTCTGTGTCGCCTTTCCAGGCAAATCCACTCTTACATTGATCGTTTCATCGTCGCGTGACACAACGGATGTCTTGGCGTTCTGCAGCGACAAGCCACTCCTCCTCTCGTCCTCAGCAACCGATGAGCCCCCG CCTGATCCAACTGCCGACACTGGCAGGACAGGACGACTTCTCGCGCTGGAAACAAGCAACCCGTGGGTAGGAAT CTGACACTTGCAAGCATTGCAGTTCTTGATATGGACATGAACCGGATAGATTGCCTGGAAGTGGCCGTGGCATTTTGGCCTGAACCGAAGCTTCGGAAGGGTCGCCGCTGACGCCATGGATGCGGCTTGCTCTGTCCTCTTCTCAGCTCGGGA ] [-] EMBL AK104876 [ TTGCAACCTGCATATCAACTGCAATGTCTCATCTGAAATTGTTTGCTTGCTCTTCTGAAGAACATTCTCTAGCGAGAATAGCAAGGAGTGATACAAATGTGAAGCACTTCTCTGAACTACTACTATCAAGAAGAGGGCTCAGAAGCCTCGTCAGATTCAGAGTTCTCTGAGGTCTCATCAGATTCAGGCTTCTCAAGCTGCAGAACAACACTGAAACTGAATGATGAACCCGGCGTAAACGATGACTCGAGCTCTTCTTCTGACTGG GTTGTCTTGATTTCAGGGTTCACCTTCAGGTTTTCCTTCTTTACAAAATCACCAACAGTGATGCTGAGTATTTCCTGAAGAACGAACTTGGTGACCCGGCTTTTGCCAAGCATCTGCAGCAGAATGCTGCTTGGTATATTTGATGTTCTCCCTCCTTTGGAC TTCCTAAAA CCTGG AACTGGC GGCGCATCACG AGCC AAGC TTGTC AAGGCTTC ATC AAACA CCTTCTGTGTCGCCTTTCCAGGCAAATCCACTCTTACATTGATCGTTTCATCGTCGCGTGACACAACGGATGTCTTGGCGTTCTGCAGCGACAAGCCACTCTTCCTCTCGTCCTCAGCAACCGATGAGCCCCCG CCTGATCCAACTGCCGACACTGGCAGGACAGGACGACTTCTCGCGCTGGAAACAAGCAACCCGTGGGTAGGAAT CTGACAC TGCAAGCATTGCAGTTCTTGATATGGACATGAACCGGATAGATTGCCTGGAAGTGGCCGTGGCATTTTGGCCTGAACCGAAGCTTCGGAAGGGTCGCCGCTGACGCCATGGATGCGGCTTGCTCTGTCCTCTTCTCAGCT ] [+] EMBL CF281867 [ ttttTCTGAAATTGTTTGCTTGCTCTTCTGAAGAACATTCTCTAGCGAGAATAGCAAGGAGTGATACAAATGTGAAGCACTTCTCTGAACTACTACTATCAAGAAGAGGGCTCAGAAGCCTCGTCAGATTCAGAGTTCTCTGAGGTCTCATCAGATTCAGGCTTCTCAAGCTGCAGAACAACACTGAAACTGAATGATGAACCCGGCGTAAACGATGACTCGAGCTCTTCTTCTGACAGG GTTGTCTTGATTTCAGGGTTCACCTTCAGGTTTTCCTTCTTTACAAAATCACCAACAGTGATGCTGAGTATTTCCTGAAGAACGAACTTGGTGACCCGGCTTTTGCCAAGCATCTGCAGCAGAATGCTGCTTGGTATATNTGATGTTCTCCCTCCTTTGGAC TTCCTAAAA CCTGG AACTGGC GGTGCATCACG AGCC AAGC TTGTC AAGGCTTC ATC AAACA CCTTCTGTGTCGCCTTTCCAGGCAAATCCACTCTTACATTGA ] [-] EMBL CB679294 [ GGAGTGATACAAATGTGAAGCACTTCTCTGAACTACTACTATCAAGAAGAGGGCTCAGAAGCCTCGTCAGATTCAGAGTTCTGTGAGGTCTCATCAGATTCAGGCTTCTCAAGCTGCAGAACAACACTGAAACTGAATGATGAACCCGGCGTAAACGATGACTCGAGCTCTTCTTCTGACTGG GTTGTCTTGATTTCAGGGTTCACCTTCAGGTTTTCCTTCTTTACAAAATCACCAACAGTGATGCTGAGTATTTCCTGAAGAACGAACTTGGTGACCCGGCTTTTGCCAAGCATCTGCAGCAGAATGCTGCTTGGTATATTTGATGTTCTCCCTCCTTTGGAC TTCCTAAAA CCTGG ATCTGGC GGTGCATCACG AGCC AAGC TTGTC AAGGCTTC ATC AAACA CCTTCTGTGTCGCCTTTCCAGGCAAATCCACTCTTACATTGATCGTTTCATCGTGGCGTGACACAACGGATGTCTTGGCGTTTTGCAGCGACAAGCCACTCTTCCTCTCGTCCTCAGCAACCGATGAGCCCCCG CCTGATCCAACTGCCGACACTGGCAGGACAGGACGACTTCTCGCGCTGGAAACAAGCAACCCGTGGGTAGGAATCCTGACACTTGCAAGCATTGCAGTTCTTGATATGGACATGAACCGGATAGATTGCCTGGAAGTGGCCGTGGCATTTTGGCCTGAACCGAAGCTTCGGAAGGGTCGCCGCTGACGCCAT ] [-] EMBL CF335277 [ TTCTTTACAAAATCACCAACAGTGATGCTGAGTATTTCCTGAAGAACGAACTTGGTGACCCGGCTTTTGCCAAGCATCTGCAGCAGAATGCTGCTTGGTATATTTGATGTTCTCCCTCCTTTGGAC TTCCTAAAA CCTGG AACTGGC GGTGCATCACG AGCC AAGC TTGTC AAGGCTTC ATC AAACA CCTTCTGTGTCGCCTTTCCAGGCAAATCCACTCTTACATTGATCGTTTCATCGTCGCGTGACACAACGGATGTCTTGGCGTTCTGCAGCGACAAGCCACTCTTCCTCTCGTCCTCAGCAACCGATGAGCCCCCG CCTGATCCAACTGCCGACACTGGCAGGACAGGACGACTTCTCGCGCTGGAAACAAGCAACCCGTGGGTAGGAAT CTGACACTTGCAAGCATTGCAGTTCTTGATATGGACATGAACCGGATAGATTGCCTGGAAGTGGCCGTGGCATTTTGGCCTGAACCGAAGCTTCGGAAGGGTCGCCGCTGACGCCATGGATGCGGCTTGCTCTGTCCTCTTCTCAGCTC ] [-] EMBL CF317933 [ CAACAGTGATGCTGAGTATTTCCTGAAGAACGAACTTGGTGACCCGGCTTTTGCCAAGCATCTGCAGCAGAATGCTGCTTGGTATATTTGATGTTCTCCCTCCTTTGGAC TTCCTAAAA CCTGG AACTGGC GGTGCATCACG AGCC AAGC TTGTC AAGGCTTC ATC AAACA CCTTCTGTGTCGCCTTTCCAGGCAAATCCACTCTTACATTGATCGTTTCATCGTCGCGTGACACAACGGATGTCTTGGCGTTCTGCAGCGACAAGCCACTCTTCCCCTCGTCCTCAGCAACCGATGAGCCCCCG CCTGATCCAACTGCCGACACTGGCAGGACAGGACGACTTCTCGCGCTGGAAACAAGCAACCCGTGGGTAGGAAT CTGACACTTGCAAGCATTGCAGTTCTTGATATGGACATGAACCGGATAGATTGCCTGGAAGTGGCCGTGGCATTTTGGCCTGAACCGAAGCTTCGGAAGGGTCGCCGCTGACGCCATGGATGCGGCTTGCTCTGTCCTCTTCTCAGCTCGGGAAAACAGTTTCTACTCCTCAGTCCATG] [-] EMBL CF310619 [ CAACAGTGATGCTGAGTATTTCCTGAAGAACGAACTTGGTGACCCGGCTTTTGCCAAGCATCTGCAGCAGAATGCTGCTTGGTATATTTGATGTTCTCCCTCCTTTGGAC TTCCTAAAA CCTGG AACTGGC GGTGCATCACG AGCC AAGC TTGTC AAGGCTTC ATC AAACA CCTTCTGTGTCGCCTTTCCAGGCAAATCCACTCTTACATTGATCGTTTCATCGTCGCGTGACACAACGGATGTCTTGGCGTTCTGCAGCGACAAGCCACTCTTCCTCTCGTCCTCAGCAACCGATGAGCCCCCG CCTGATCCAACTGCCGACACTGGCAGGACAGGACGACTTCTCGCGCTGGAAACAAGCAACCCGTGGGTAGGAAT CTGACACTTGCAAGCATTGCAGTTCTTGATATGGACATGAACCGGATAGATTGCCTGGAAGTGGCCGTGGCATTTTGGCCTGAACCGAAGCTTCGGAAGGGTCGCCGCTGACGCCATGGATGCGGCTTGCTCTGTCCTCTTCTCAGCTCGG ] [-] EMBL CF299812 [ TGATGCTGAGTATTTCCTGAAGAACGAACTTGGTGACCCGGCTTTTGCCAAGCATCTGCAGCAGAATGCTGCTTGGTATATTTGATGTTCTCCCTCCTTTGGAC TTCCTAAAA CCTGG AACTGGC GGTGCATCACG AGCC AAGC TTGTC AAGGCTTC ATC AAACA CCTTCTGTGTCGCCTTTCCAGGCAAATCCACTCTTACATTGATCGTTTCATCGTCGCGTGACACAACGGATGTCTTGGCGTTCTGCAGCGACAAGCCACTCTTCCTCTCGTCCTCAGCAACCGATGAGCCCCCG CCTGATCCAACTGCCGACACTGGCAGGACAGGACGACTTCTCGCGCTGGAAACAAGCAACCCGTGGGTAGGAAT ATGACACTTGCAAGCATTGCAGTTCTTGATATGGACATGAACCGGATAGATTGCCTGGAAGTGGCCGTGGCATTTTGGCCTGAACCGAAGCTTCGGAAGGGTCGCCGCTGACGCCATGGATGCGGCTTGCTTTGTCCTCTTCTCAGCTC GGAAAA A TTTCTACTC ] [-] EMBL CF310660 [ GATGCTGAGTATTTCATGAAGAACGAACTTGGTGACCCGGCTTTTGCCAAGCATCTGCAGCAGAATGCTGCTTGGTATATTTGATGTTCTCCCTCCTTTGGAC TTCCTAAAA CCTGG AACTGGC GGTGCATCACG AGCC AAGC TTGTC AAGGCTTC ATC AAACA CCTTCTGTGTCGCCTTTCCAGGCAAATCCACTCTTACATTGATCGTTTCATCGTCGCGTGACACAACGGATGTCTTGGCGTTCTGCAGCGACAAGCCACTCTTCCTCTCGTCCTCAGCAACCGATGAGCCCCCG CCTGATCCAACTGCCGACACTGGCAGGACAGGACGACTTCTCGCGCTGGAAACAAGCAACCCGTGGGTAGGAAT CTGACACTTGCAAGCATTGCAGTTCTTGATATGGACATGAACCGGATAGATTGCCTGGAAGTGGCCGTGGCATTTTGGCCTGAACCGAAGCTTCGGAAGGGTCGCCGCTGACGCCATGGATGCGGCTTGCTCTGTCCTCTT ] [-] EMBL CF317661 [ CTTTTGCCAAGCATCTGCAGCAGAATGCTGCTTGGTATATTTGATGTTCTCCCTCCTTTGGAC TTCCTAAAA CCTGG AACTGGC GGTGCATCACG AGCC AAGC TTGTC AAGGCTTC ATC AAACA CCTTCTGTGTCGCCTTTCCAGGCAAATCCACTCTTACATTGATCGTTTCATCGTCGCGTGACACAACGGATGTCTTGGCGTTCTGCAGCGACAAGCCACTCTTCCTCTCGTCCTCAGCAACCGATGAGCCCCCG CCTGATCCAACTGCCGACACTGGCAGGACAGGACGACTTCTCGCGCTGGAAACAAGCAACCCGTGGGTAGGAAT CTGACACTTGCAAGCATTGCAGTTCTTGATATGGACATGAACCGGATAGATTGCCTGGAAGTGGCCGTGGCATTTTGGCCTGAACCGAAGCTTCGGAAGGGTCGCCGCTGACGCCATGGATGCGGCTTGCTCTGTCCTCTTCTCAGCTCGGGAAAACAGgagcc ] [-] EMBL OSC9991 [ TTCNCCCTCCTTTGGACCNTCCCTAAAACCCTGGAAACTGGCGGGTGCATCACGAAGCCAAAGCTTTGTCAAAGGCTTCAATCAAAACACCCTTCTGTGTCGCCTTTCCAGGCAAATCCACTCTTACATTGATCGTTTCATCGTCGCGTGACACAACGGATGTCTTGGCGTTCTGCAGCGACAAGCCACTCTTCCTCTCGTCCTCAGCAACCGATGAGCCCCCG CCTGATCCAACTGCCGACACTGGCAGGACAGGACGACTTCTCGCGCTGGAAACAAGCAACCCGTGGGTAGGAAT CTGACACNTGCAAGCATTGCAGTTCTTGATATGGACATGAACCGGATAGATTGCCTGGAAGTGGCCGTGGCATTTTGGCCTGAACCGAAGCTTCGGAAGGGTCGCC NTGACGCCATGGATGCGGCTTGC ] [-] EMBL CB096215 [ AGGCTTC ATC AAACA CCTTCTGTGTCGCCTTTCCAGGCAAATCCACTCTTACATTGATCGTTTCACCGTCGCGTGACACAACGGATGTCTTGGCGTTCTGCAGCGACAAGCCACTCTTCCTCTCGTCCTCAGCAACCGATGAGCCCCCG CCTGATCCAACTGCCGACACTGGCAGGACAGGACGACTTCTCGCGCTGGAAACAAGCAACCCGTGGGTAGGAAT CTGACACTTGCAAGCATTGCAGTTCTTGATATGGACATGAACCGGATAGATTGCCTGGAAGTGGCCGTGGCATTTTGGCCTGAACCGAAGCTTCGGAAGGGTCGCCGCTGACGCCATGGATGCGGCTTGCTCTGTCCTCTTCTCAGCTCGGGAAAACAG ] consensusID : consensus_15374#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 675 fasta sequence [TTTTTTTTTTTTTTTTACACAAATCTCATAGATGTGTCACTTGCAACCTGCATATCAACTGCAATGTCTCATCTGAAATTGTTTGCTTGCTCTTCTGAAGAACATTCTCTAGCGAGAATAGCAAGGAGTGATACAAATGTGAAGCACTTCTCTGAACTACTACTATCAAGAAGAGGGCTCAAAAGCCTCGTCAGATTCAGAGTTCTCTGAGGTCTCATCAGATTCAGGCTTCTCAAGCTGCAGAACAACACTGAAACTGAATGATGAACCCGGCGTAAACTATGACTCGAGCTCTTCTTCTGACTGGGTTGTCTTGATTTCAGGGTTCACCTTCAGGTTTTCCTTCTTTACAAAATCACCAACAGTGATGCTGAGTATTTCCTGAAAAACGAACTTGGTGACCCGGCTTTTGCCAAGCATCTGCAGCAAAATGCTGCTTGGTATATTTGATGTTCTCCCCTTCAACATCCAACAGATTTCCATGAAGGAACAGGAAAAAAACCTGAACAAGCTTAACCTGATTCATCCAGAACCGATTTATCTACATGATTCTTGCGGTAAACGGACCCGACAACCGCGCGCCTTGTCTCCCCGTGTCCATGACCTGCCCCGGGCACTACCTGCCGTGGGGTCAACTAGGGCCGTAACTGGCCAGCCACGTCCCACCCCCGCTTG] [+] EMBL CA759755 [TTTTTTTTTTTTTTTTACACAAATCTCATAGATGTGTCACTTGCAACCTGCATATCAACTGCAATGTCTCATCTGAAATTGTTTGCTTGCTCTTCTGAAGAACATTCTCTAGCGAGAATAGCAAGGAGTGATACAAATGTGAAGCACTTCTCTGAACTACTACTATCAAGAAGAGGGCTCAAAAGCCTCGTCAGATTCAGAGTTCTCTGAGGTCTCATCAGATTCAGGCTTCTCAAGCTGCAGAACAACACTGAAACTGAATGATGAACCCGGCGTAAACTATGACTCGAGCTCTTCTTCTGACTGGGTTGTCTTGATTTCAGGGTTCACCTTCAGGTTTTCCTTCTTTACAAAATCACCAACAGTGATGCTGAGTATTTCCTGAAAAACGAACTTGGTGACCCGGCTTTTGCCAAGCATCTGCAGCAAAATGCTGCTTGGTATATTTGATGTTCTCCCCTTCAACATCCAACAGATTTCCATGAAGGAACAGGAAAAAAACCTGAACAAGCTTAACCTGATTCATCCAGAACCGATTTATCTACATGATTCTTGCGGTAAACGGACCCGACAACCGCGCGCCTTGTCTCCCCGTGTCCATGACCTGCCCCGGGCACTACCTGCCGTGGGGTCAACTAGGGCCGTAACTGGCCAGCCACGTCCCACCCCCGCTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15374#0 TTTTTGGATTATGCCTGTTTTTGTTCAGTGGTCGTCAGCACTCAGCACAAAGTACACAAA 60 consensus_15374#1 ---------------------------------------------------TTTTTTTTT 9 consensus_15374#2 -------------------------------------TTTTTTTTTTTTTTTTACACAAA 23 * consensus_15374#0 TCTCATAGATGTGTCACTTGCAACCTGCATATCAACTGCAATGTCTCATCTGAAATTGTT 120 consensus_15374#1 TTTTTTTTTTGTGTCACTTGCAACCTGCATATCAACTGCAATGTCTCATCTGAAATTGTT 69 consensus_15374#2 TCTCATAGATGTGTCACTTGCAACCTGCATATCAACTGCAATGTCTCATCTGAAATTGTT 83 * * * *************************************************** consensus_15374#0 TGCTTGCTCTTCTGAAGAACATTCTCTAGCGAGAATAGCAAGGAGTGATACAAATGTGAA 180 consensus_15374#1 TGCTTGCTCTTCTGAAGAACATTCTCTAGCGAGAATAGCAAGGAGTGATACAAATGTGAA 129 consensus_15374#2 TGCTTGCTCTTCTGAAGAACATTCTCTAGCGAGAATAGCAAGGAGTGATACAAATGTGAA 143 ************************************************************ consensus_15374#0 GCACTTCTCTGAACTACTACTATCAAGAAGAGGGCTCAGAAGCCTCGTCAGATTCAGAGT 240 consensus_15374#1 GCACTTCTCTGAACTACTACTATCAAGAAGAGGGCTCAGAAGCCTCGTCAGATTCAGAGT 189 consensus_15374#2 GCACTTCTCTGAACTACTACTATCAAGAAGAGGGCTCAAAAGCCTCGTCAGATTCAGAGT 203 ************************************** ********************* consensus_15374#0 TCTCTGAGGTCTCATCAGATTCAGGCTTCTCAAGCTGCAGAACAACACTGAAACTGAATG 300 consensus_15374#1 TCTCTGAGGTCTCATCAGATTCAGGCTTCTCAAGCTGCAGAACAACACTGAAACTGAATG 249 consensus_15374#2 TCTCTGAGGTCTCATCAGATTCAGGCTTCTCAAGCTGCAGAACAACACTGAAACTGAATG 263 ************************************************************ consensus_15374#0 ATGAACCCGGCGTAAACGATGACTCGAGCTCTTCTTCTGACTGGGTTGTCTTGATTTCAG 360 consensus_15374#1 ATGAACCCGGCGTAAACGATGACTCGAGCTCTTCTTCTGACTGGGTTGTCTTGATTTCAG 309 consensus_15374#2 ATGAACCCGGCGTAAACTATGACTCGAGCTCTTCTTCTGACTGGGTTGTCTTGATTTCAG 323 ***************** ****************************************** consensus_15374#0 GGTTCACCTTCAGGTTTTCCTTCTTTACAAAATCACCAACAGTGATGCTGAGTATTTCCT 420 consensus_15374#1 GGTTCACCTTCAGGTTTTCCTTCTTTACAAAATCACCAACAGTGATGCTGAGTATTTCCT 369 consensus_15374#2 GGTTCACCTTCAGGTTTTCCTTCTTTACAAAATCACCAACAGTGATGCTGAGTATTTCCT 383 ************************************************************ consensus_15374#0 GAAGAACGAACTTGGTGACCCGGCTTTTGCCAAGCATCTGCAGCAGAATGCTGCTTGGTA 480 consensus_15374#1 GAAGAACGAACTTGGTGACCCGGCTTTTGCCAAGCATCTGCAGCAGAATGCTGCTTGGTA 429 consensus_15374#2 GAAAAACGAACTTGGTGACCCGGCTTTTGCCAAGCATCTGCAGCAAAATGCTGCTTGGTA 443 *** ***************************************** ************** consensus_15374#0 TATTTGATGTTCTCCCTCCTTTGGACTTCCNTAAAACCTGGAACTGGCGGTGCATCACGA 540 consensus_15374#1 TATTTGATGTTCTCCCTCCTTTGGACTTCCT-AAAACCTGGAACTGGCGGTGCATCACGA 488 consensus_15374#2 TATTTGATGTTCTCCC---CTTCAACATCCAACAGATTTCCA-----TGAAGGAACAGGA 495 **************** ** ** *** * * * * * * * ** ** consensus_15374#0 GCCAAGCTTGTCAAGGCTTCATCAAACACCTTCTGTGTCGCCTT-TCCAGGCAAATCCAC 599 consensus_15374#1 GCCAAGCTTGTCAAGGCTTCATCAAACACCTTCTGTGTCGCCTT-TCCAGGCAAATCCAC 547 consensus_15374#2 AAAAAACCTGAACAAGCTTAACCTGATTCATCCAGAACCGATTTATCTACATGATTCTTG 555 ** * ** * **** * * * * * * * ** ** ** * * ** consensus_15374#0 TCTTACATTGATCGTTTCATCGTCGCGTGACACAACGGANTGTCTTGGCGTTCTGCAGCG 659 consensus_15374#1 TCTTACATTGATCGTTTCATCGTCGCGTGACACAACGGAT-GTCTTGGCGTTCTGCAGCG 606 consensus_15374#2 CGGTAAACGGACC---CGACAACCGCGCGCCTTGTCTCCCCGTGTCCATGACCTGCCCCG 612 ** * ** * * **** * * * ** * * **** ** consensus_15374#0 ACAAGCCACTCTTCCTCTCGTCCTCAGCAACCGATGAGCCCCCGCCTGATCCAACTGCCG 719 consensus_15374#1 ACAAGCCACTCTTCCTCTCGTCCTCAGCAACCGATGAGCCCCCGCCTGATCCAACTGCCG 666 consensus_15374#2 G-GCACTACCTGCCGTGGGGTCAACTAGGGCCGTAACTGGCCAGCCACGTCCCACCCCCG 671 * ** * * *** * *** ** *** *** ** *** consensus_15374#0 ACACTGGCAGGACAGGACGACTTCTCGCGCTGGAAACAAGCAACCCGTGGGTAGGAATCT 779 consensus_15374#1 ACACTGGCAGGACAGGACGACTTCTCGCGCTGGAAACAAGCAACCCGTGGGTAGGAATCT 726 consensus_15374#2 CTTG-------------------------------------------------------- 675 consensus_15374#0 GACACTTGCAAGCATTGCAGTTCTTGATATGGACATGAACCGGATAGATTGCCTGGAAGT 839 consensus_15374#1 GACACTTGCAAGCATTGCAGTTCTTGATATGGACATGAACCGGATAGATTGCCTGGAAGT 786 consensus_15374#2 ------------------------------------------------------------ consensus_15374#0 GGCCGTGGCATTTTGGCCTGAACCGAAGCTTCGGAAGGGTCGCCGCTGACGCCATGGATG 899 consensus_15374#1 GGCCGTGGCATTTTGGCCTGAACCGAAGCTTCGGAAGGGTCGCCGCTGACGCCATGGATG 846 consensus_15374#2 ------------------------------------------------------------ consensus_15374#0 CGGCTTGCTCTGTCCTCTTCTCAGCTC----------TTTCTACTCCTTCAGTCCGTG 947 consensus_15374#1 CGGCTTGCTCTGTCCTCTTCTCAGCTCGGGAAAACAGTTTCTACTCCT-CAGTCCATG 903 consensus_15374#2 ---------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||