These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15378#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 833 fasta sequence [TTATCTACATCTTCTTCTGCTTCTTCCTTCCAGCTTGCAAAACTGGCTTAATTGATTCCATATTTCCATTCCACACGTCTTGAGAGCTAATCTTTTGGAAGAGGAAACACGTCTTAGCTTGAGTTAATAATTCCATCGATCGTCTCCTCTCCATTGACTTTAATTGAAACGCCCCCTTTTCTTCGCTCTGCGGCTACCTATCTCTTGTATTTATATCCCGGATAGCTACCTGTGCTTCAATTCCTCTGCAAATCCATCCA-TATT-A-G-CTTCCAACACAAGGAGATCACAACAATGGCCACATTGCTATTGTCAAGCAACAAGAAGCCCTGCAGCTCGTCGTCGTCGTTGCTGCTGCTTGTGCTGCTCCTCCTGCTCGTCTTCTTCGCACACCACGGCAGTTGCAGCAGGCCTCTGCCTCTTCCGTCGC---CGACGCCGATGCAGCCACAGCTGAAGCACGAATCGGAGACAGCATCAGCAGATACGACGACGACGA-CTGAAGAACAAGTGAT---GCAGCAGCAGCTGTCTTGGTTGAGAAGCATGAAGCCCAGAGGGAGGCCACAGCCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTACTCGTATTTGCCCTCTTCCTCTCCCTCCTCTGTAGGCTTTCTATCTTAGTTGTGTATGTATGAGTGTATGACACACGCTACTTGTTTTTCTTGTTTCATTCTTTTTGTTGATTTGTTCGATATACAGAAACTATGTAC--ATATATACACATGAGATCGATTTGCTAGTTAGTTCGCAACAATTAATGGAACGTTATTCTTTGGTTTCAAAAAAAGTTTTCTGAAAAAAAAA] [+] EMBL AK063119 [TTATCTACATCTTCTTCTGCTTCTTCCTTCCAGCTTGCAAAACTGGCTTAATTGATTCCATATTTCCATTCCACACGTCTTGAGAGCTAATCTTTTGGAAGAGGAAACACGTCTTAGCTTGAGTTAATAATTCCATCGATCGTCTCCTCTCCATTGACTTTAATTGAAACGCCCCCTTTTCTTCGCTCTGCGGCTACCTATCTCTTGTATTTATATCCCGGATAGCTACCTGTGCTTCAATTCCTCTGCAAATCCATCCA TATT A G CTTCCAACACAAGGAGATCACAACAATGGCCACATTGCTATTGTCAAGCAACAAGAAGCCCTGCAGCTCGTCGTCGTCGTTGCTGCTGCTTGTGCTGCTCCTCCTGCTCGTCTTCTTCGCACACCACGGCAGTTGCAGCAGGCCTCTGCCTCTTCCGTCGC CGACGCCGATGCAGCCACAGCTGAAGCACGAATCGGAGACAGCATCAGCAGATACGACGACGACGA CTGAAGAACAAGTGAT GCAGCAGCAGCTGTCTTGGTTGAGAAGCATGAAGCCCAGAGGGAGGCCACAGCCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTACTCGTATTTGCCCTCTTCCTCTCCCTCCTCTGTAGGCTTTCTATCTTAGTTGTGTATGTATGAGTGTATGACACACGCTACTTGTTTTTCTTGTTTCATTCTTTTTGTTGATTTGTTCGATATACAGAAACTATGTAC ATATATACACATGAGATCGATTTGCTAGTTAGTTCGCAACAATTAATGGAACGTTA ] [+] EMBL CF320133 [ TGCAAATCCATCCATTATT A G CTTCCAACACAAGGAGATCACAACAATGGCCACATTGCTATTGTCAAGCAACAAGAAGCCCTGC GCTCGTCGTCGTCGTTGCTGCTGCTTGTGCTGCTCCTCCTGCTCGTCTTCTTCGCACACCACGGCAGTTGCAGCAGGCCTCTGCCTCTTCCGTCGC CGACGCCGATGCAGCCACAGCTGAAGCACGAATCGGAGACAGCATCAGCAGATACGACGACGACGA CTGAAGAACAAGTGAT GCAGCAGCAGCTGTCCTGGTTGAGAAGCATGAAGCCCAGAGGGAGGCCACAGCCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTACTCGTATTTGCCCTCTTCCTCTCCCTCCTCTGTAGGCTTTCTATCTTAGTTGTGTATGTATGAGTGTATGACACACGCTACTTGTTTTTCTTGTTTCATTCTTTNTGTTGATTTGTTCGATATACAGAAACTATGTAC ATATATACACATGAGATCGATTTGCTAGTTAGTTCGCAACAATTAATGGAACGTTATTCTTTGGTTT ] [+] EMBL CF321220 [ AATCCATCCA TATT A GTCTTCCAACACAAGGAGATCACAACAATGGCCACATTGCTATTGTCAAGCAACAAGAAGCCCTGCAGCTCGTCGTCGTCGTTGCTGCTGCTTGTGCTGCTCCTCCTGCTCGTCTTCTTCGCACACCACGGCAGTTGCAGCAGGCCTCTGCCTGTTCCGTCGC CGACGCCGATGCAGCCACAGCTGAAGCACGAATCGGAGACAGCATCAGCAGATACGACGACGACGA CTGAAGAACAAGTGAT GCAGCAGCAGCTGTCTTGGTTGAGAAGCATGAAGCCCAGAGGGAGGCCACAGCCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTACTCGTATTTGCCCTCTTCCTCTCCCTCCTCTGTAGGCTTTCTATCTTACTTGTGTATGTATGAGTGTATGACACACGCTACTTGCTTTTCTTGATTCATTCTTTCTGTTGATTTGTTCGATATACAGAAACTATGTAC ATATATACACATGAGATCGATTTGCTAGTTAGTTCGCAACAATTAATGGAACGTTA ] [+] EMBL CF318832 [ AATCCATCCA TATTNA G CTTCCAACACAAGGAGATCACAACAATGGCCACATTGCTATTGTCAAGCAACAAGAAGCCCTGCAGCTCGTCGTCGTCGTTGCTGCTGCTTGTGCTGCTCCTCCTGCTCGTCTTCTTCGCGCACCACGGCAGCTGCAGCAGGCCTCTGCTTCTCCCGTCGCCGACGACGCCGATGCAGCCGCAGCTGAAGCACGAATCGGAGACAGCATCAGCAGATACGACGACGAGGA CTGAAGAACAAGTGGTGCAGCAGCAGCAGCTGTCTTGGTTGAGAAGTATGAAGCCCAGAGGAAGGCCACAACCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTGCTCGTACTTGCCATCTTCCTCTTCCTCCTCTGTAGGCTCTCGATCTTAGTTGTGTATGTATGAGTGTATGACACAGGCTACTTCTTTTTCTTGTTTCTTTTTATCTGTTGATTTGTTGGATATACAGAAACTATGTACATATATATATACATGAGATCGATTTGCTAGCTAGTTCGCAACA ] [+] EMBL CF319550 [ TCCATCCA TATTNA G CTTCCAACACAAGGAGATCACAACAATGGCCACATTGCTATTGTCAAGCAACAAGAAGCCCTGCAGCTCGTCGTCGTCGTTGCTGCTGCTTGTGCTGCTCCTCCTGCTCGTCTTCTTCGCACACCACGGCAGTTGCAGCCGGCCTCTGCCTCTTCCGTCGC CGACGCCGATGCAGCCACAGCTGAAGCACGAATCGGAGACAGCATCAGCAGATACGACGACGACGA CTGAAGAACAAGTGAT GCAGCAGCAGCTGTCTTGGTTGAGAAGCATGAAGCCCAGAGGGAGGCCACAGCCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTACTCGTATTTGCCCTCTTCCTCTCCCTCCTCTGTAGGCTTTCTATCTTAGTTGTGTATGTATGAGTGTATGACACACGCTACTTGTTTTTCTTGTTTCATTCTTTTTGTTGATTTGTTCGATATACAGAAACTATGTAC ATATATACACATGAGATCGATTTGCTAG ] [+] EMBL CF313955 [ ATCCA TATT ANG CTTCCAACACAAGGAGATCACAACAATGGCCACATTGCTATTGTCAAGCAACAAGAAGCCCTGC GCTCGTCGTCGTCGTTGCTGCTGCTTGTGCTGCTCCTCCTGCTCGTCTTCTTCGCACACCACGGCAGTTGCAGCAGGCCTCTGCCTCTTCCGTCGC CGACGCCGATGCAGCCACAGCTGAAGCACGAATCGGAGACAGCATCAGCAGATACGACGACGACGA CTGAAGAACAAGTGAT GCAGCAGCAGCTGTCTTGGTTGAGAAGCATGAAGCCCAGAGGGAGGCCACAGCCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTACTCGTATTTGCCCTCTTCCTCTCCCTCCTCTGTAGGCTTTCTATCTTAGTTGTGTATGTATGAGTGTATGACACACGCTACTTGTTTTTCTTGTTTCATTCTTTTTGTTGATTTGTTCGATATACAGAAACTATGTAC ATATATACACATGAGATCGATTTGCTAGTTAGTTCGCAACAATTAATGGAACGTTATTCTTTGGTTTCAA ] [+] EMBL AK106364 [ CA TATT A G CTTCCAACACAAGGAGATCACAACAATGGCCACATTGCTATTGTCAAGCAACAAGAAGCCCTGCAGCTCGTCGTCGTCGTTGCTGCTGCTTGTGCTGCTCCTCCTGCTCGTCTTCTTCGCGCACCACGGCAGCTGCAGCAGGCCTCTGCTTCTCCCGTCGCCGACGACGCCGATGCAGCCGCAGCTGAAGCACGAATCGGAGACAGCATCAGCAGATACGACGACGAGGA CTGAAGAACAAGTGGTGCAGCAGCAGCAGCTGTCTTGGTTGAGAAGTATGAAGCCCAGAGGAAGGCCACAACCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTGCTCGTACTTGCCATCTTCCTCTTCCTCCTCTGTAGGCTCTCGATCTTAGTTGTGTATGTATGAGTGTATGACACAGGCTACTTCTTTTTCTTGTTTCTTTTTATCTGTTGATTTGTTGGATATACAGAAACTATGTACATATATATATACATGAGATCGATTTGCTAGCTAGTTCGCAACAACTAATGGAACGTTTTTC ] [-] EMBL CF320191 [ TGTCAAGCAACAAGAAGCCCTGCAGCTCGTCGTCGTCGTTGCTGCTGCTTGTGCTGCTCCTCCTGCTCGTCTTCTTCGCACACCACGGCAGTTGCAGCAGGCCTCTGCCTCTTCCGTCGC CGACGCCGATGCAGCCACAGCTGAAGCACGAATCGGAGACAGCATCAGCAGATACGACGACGACGATCTGAAGAACAAGTGAT GCAGCAGCAGCTGTCTTGGTTGAGAAGCATGAAGCCCAGAGGGAGGCCACAGCCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTACTCGTATTTGCCCTCTTCCTCTCCCTCCTCTGTAGGCTTTCTATCTTAGTTGTGTATGTATGAGTGTATGACACACGCTACTTGTTTTTCTTGTTTCATTCTTTTTGTTGATTTGTTCGATATACAGAAACTATGTAC ATATAaaaa ] [-] EMBL CF320134 [ GTCAAGCAACAAGAAGCCCTGCAGCTCGTCGTCGTCGTTGCTGCTGCTTGTGCTGCTCCTCCTGCTCGTCTTCTTCGCACACCACGGCAGTTGCAGCAGGCCTCTGCCTCTTCCGTCGC CGACGCCGATGCAGCCACAGCTGAAGCACGAATCGGAGACAGCATCAGCAGATACGACGACGACGA CTGAAGAACAAGTGAT GCAGCAGCAGCTGTCCTGGTTGAGAAGCATGAAGCCCAGAGGGAGGCCACAGCCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTACTCGTATTTGCCCTCTTCCTCTCCCTCCTCTGTAGGCTTTCTATCTTAGTTGTGTATGTATGAGTGTATGACACACGCTACTTGTTTTTCTTGTTTCATTCTTTTTGTTGATTTGTTCGATATACAGAAACTATGTAC ATATATACACATGAGATCGATTTGCTAGTTAGTTCGCAACAATTAATGGAACGTTATTCTTTGGTTTCCCCTGCAGTTTTCTGAAAAAAAAA] [-] EMBL CF313956 [ TCAAGCAACAAGAAGCCCTGCAGCTCGTCGTCGTCGTTGCTGCTGCTTGTGCTGCTCCTCCTGCTCGTCTTCTTCGCACACCACGGCAGTTGCAGCAGGCCTTTGCCTCTTCCGTCGC CGACGCCGATGCAGCCACAGCTGAAGCACGAATCGGAGACAGCATCAGCAGATACGACGACGACGA CTGAAGAACAAGTGAT GCAGCAGCAGCTGTCTTGGTTGAGAAGCATGAAGCCCAGAGGGAGGCCACAGCCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTACTGGTATTTGCCCTCTTCCTCTCCCTCCTCTGTAGGCTTTCTATCTTAGTTGTGTATGTATGAGTGTATGACACACGCTACTTGTTTTTCTTGTTTCATTCTTTTTGTTGATTTGTTCGATATACAGAAACTATGTAC ATATATACACATGAGATCGATTTGCTAGTTAGTTCGCAACAATTAATGGAACGTTATTCTTTGGTTTCAAAAAAAaaaaaaaaa ] [-] EMBL CF314348 [ CAAGAAGCCCTGCAGCTCGTCGTCGTCGTTGCTGCTGCTTGTGCTGCTCCTCCTGCTCGTCTTCTTCGCACACCACGGCAGTTGCAGCAGGCCTCTGCCTCTTCCGTCGC CGACGCCGATGCAGCCACAGCTGAAGCACGAATCGGAGACAGCATCAGCAGATACGACGACGACGA CTGAAGAACAAGTGAT GCAGCAGCAGCTGTCTTGGTTGAGAAGCATGAAGCCCAGAGGGAGGCCACAGCCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTACTCGTATTTGCCCTCTTCCTCTCCCTCCTCTGTAGGCTTTCTATCTTAGTTGTGTATGTATGAGTGTATGACACACGCTACTTGTTTTTCTTGTTTCATTCTTTTTGTTGATTTGTTCGATATACAGAAACTATGTAC ATATATACACATGAGATCGATTTGCTAGTTAGTTCGCAACAATTAATGGAACGTTATTCTTTGGTTTCAAAAAA ] consensusID : consensus_15378#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 582 fasta sequence [TGGACTGAAGGAGTAGAAAAATTCCTCTGCAATCCTCCTATTAGCTTCCAACACAAGGAGATCCAACAATGGCCCATTGCTTTGTCAGCACAGAACCTGCGCTGTCGTCGTCGTTGCTGCTGCTTGTGCTGCTCCTCCTGCTCGTCTTCTTCGCACACCACGGCAGTTGCAGCAGGCCTCTGCCTCTTCCGTCGCCGACGCCGATGCAGCCACAGCTGAAGCACGAATCGGAGACAGCATCAGCAGATACGACGACGACGACTGAAGAACAAGTGATGCAGCAGCAGCTGTCTTGGTTGAGAAGCATGAAGCCCAGAGGGAGGCCACAGCCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTACTCGTATTTGCCCTCTTCCTCTCCCTCCTCTGTAGGCTTTCTATCTTAGTTGTGTATGTATGAGTGTATGACACACGCTACTTGTTTTTCTTGTTTCATTCTTTTTGTTGATTTGTTCGATATACAGAAACTATGTACATATATACACATGAGATCGATTTGCTAGTTAGTTCGCAACAATTAATGGAACGTTATTCTTTGGTTTCAAAAA] [+] EMBL CF314347 [TGGACTGAAGGAGTAGAAAAATTCCTCTGCAATCCTCCTATTAGCTTCCAACACAAGGAGATCCAACAATGGCCCATTGCTTTGTCAGCACAGAACCTGCGCTGTCGTCGTCGTTGCTGCTGCTTGTGCTGCTCCTCCTGCTCGTCTTCTTCGCACACCACGGCAGTTGCAGCAGGCCTCTGCCTCTTCCGTCGCCGACGCCGATGCAGCCACAGCTGAAGCACGAATCGGAGACAGCATCAGCAGATACGACGACGACGACTGAAGAACAAGTGATGCAGCAGCAGCTGTCTTGGTTGAGAAGCATGAAGCCCAGAGGGAGGCCACAGCCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTACTCGTATTTGCCCTCTTCCTCTCCCTCCTCTGTAGGCTTTCTATCTTAGTTGTGTATGTATGAGTGTATGACACACGCTACTTGTTTTTCTTGTTTCATTCTTTTTGTTGATTTGTTCGATATACAGAAACTATGTACATATATACACATGAGATCGATTTGCTAGTTAGTTCGCAACAATTAATGGAACGTTATTCTTTGGTTTCAAAAA] consensusID : consensus_15378#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 564 fasta sequence [GGACCTGCCTGGACTGAAGAGTGAAAAAATCCATCCATATTAGCTTCCAACACAAGGAGATCACAACAATGGCCACATTGCTATTGTCAAGCAACAAGAAGCCCTGCAGCTCGTCGTCGTCGTTGCTGCTGCTTGTGCTGCTCCTCCTGCTCGTCTTCTTCGCGCACCACGGCAGCTGCAGCAGGCCTCTGCTTCTCCCGTCGCCGACGACGCCGATGCAGCCGCAGCTGAAGCACGAATCGGAGACAGCATCAGCAGATACGACGACGAGGACTGAAGAACAAGTGGTGCAGCAGCAGCAGCTGTCTTGGTTGAGAAGTATGAAGCCCAGAGGAAGGCCACAACCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTGCTCGTACTTGCCATCTTCCTCTTCCTCCTCTGTAGGCTCTCGATCTTAGTTGTGTATGTATGAGTGTATGACACAGGCTACTTCTTTTTCTTGTTTCTTTTTATCTGTTGATTTGTTGGATATACAGAAACTATGTACATATATATATA-CATGAGATCGATTTGCTAAAAAAAAAAAA] [+] EMBL CF320192 [GGACCTGCCTGGACTGAAGAGTGAAAAAATCC TCC TATTAGCTTCCAACACAAGGAGATCACAACAATGGCCACATTGCTATTGTCAAGCAACAAGAAGCCCTG AGCTCGTCGTCGTCGTTGCTGCTGCTTGTGCTGCTCCTCCTGCTCGTCTTCTTCGCACACCACGGCAGTTGCAGCAGGCCTCTGCCTCTTCCGTCGC CGACGCCGATGCAGCCACAGCTGAAGCACGAATCGGAGACAGCATCAGCAGATACGACGACGACGACTGAAGAACAAGTGAT GCAGCAGCAGCTGTCTTGGTTGAGAAGCATGAAGCCCAGAGGGAGGCCACAGCCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTACTCGTATTTGCCCTCTTCCTCTCCCTCCTCTGTAGGCTTTCTATCTTAGTTGTGTATGTATGAGTGTATGACACACGCTACTTGTTTTTCTTGTTTCATTCTTTTTGTTGATTTGTTCGATATACAGAAACTATGTACATATAaaa ] [+] EMBL CF320865 [ tgcAAATCCATCCATATTAGCTTCCAACACAAGGAGATCACAACAATGGCCACATTGCTATTGTCAAGCAACAAGAAGCCCTGCAGCTCGTCGTCGTCGTTGCTGCTGCTTGTGCTGCTCCTCCTGCTCGTCTTCTTCGCACACCACGGCAGTTGCAGCAGGCCTCTGCCTCTTCCGTCGC CGACGCCGATGCAGCCACAGCTGAAGCACGAATCGGAGACAGCATCAGCAGATACGACGACGACGACTGAAGAACAAGTGAT GCAGCAGCAGCTGTCTTGGTTGAGAAGCATGAAGCCCAGAGGGAGGCCACAGCCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTACTCGTACTTGCCATCTTCCTCTTCCTCCTCTGTAGGCTCTCGATCTTAATTGCGTATGTATGAGTGTATGACACAGGCTACTTCTTTTTCTTGTTACTTTATATCTGATGATTTGTTGGATATACAGAAACTATGTACATATATATATA CATGAGATCGATTTGCTAAAAAAAAAAAA] [+] EMBL CF314041 [ TCCATATTAGCTTCC ACACAAGGAGATCACAACAATGGCCACATTGCTATTGTCAAGCAACAAGAAGCCCTG AGCTCGTCGTCGTCGTTGCTGCTGCTTGTGCTGCTCCTCCTGCTCGTCTTCTTCGCGCACCACGGCAGCTGCAGCAGGCCTCTGCTTCTCCCGTCGCCGACGACGCCGATGCAGCCGCAGCTGAAGCACGAATCGGAGACAGCATCAGCAGATACGACGACGAGGACTGAAGAACAAGTGGTGCAGCAGCAGCAGCTGTCTTGGTTGAGAAGTATGAAGCCCAGAGGAAGGCCACAACCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTGCTCGTACTTGCCATCTTCCTCTTCCTCCTCTGTAGGCTCTCGATCTTAGTTGTGTGTGTATGAGTGTATGACACAGGCTACTTCTTTTTCTTGTTTCTTTTTATCTGTTGATTTGTTGGATATACAGAAACTATGTACATATATATATACCATGAGATCGATTTGCTAAAAA ] [-] EMBL CF314042 [ tcCCATATTAGCTTCCAACACAAGGAGATCACAACAATGGCCACATTGCTATTGTCAAGCAACAAGAAGCCCTGCAGCTCGTCGTCGTCGTTGCTGCTGCTTGTGCTGCTCCTCCTGCTCGTCTTCTTCGCGCACCACGGCAGCTGCAGCAGGCCTCTGCTTCTCCCGTCGCCGACGACGCCGATGCAGCCGCAGCTGAAGCACGAATCGGAGACAGCATCAGCAGATACGACGACGAGGACTGAAGAACAAGTGGTGCAGCAGCAGCAGCTGTCTTGGTTGAGAAGTATGAAGCCCAGAGGAAGGCCACAACCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTGCTCGTACTTGCCATCTTCCTCTTCCTCCTCTGTAGGCTCTCGATCTTAGTTGTGTGTGTATGAGTGTATGACACAGGCTACTTCTTTTTCTTGTTTCTTTTTATCTGTTGATTTGTTGGATATACAGAAACTATGTACATATATATATA CATGAGATCGATTTGCTAAAAAA ] [+] EMBL CF321531 [ CATATTAGCTTCC ACACAAGGAGATCACAACAATGGCCACATTGCTATTGTCAAGCAACAAGAAGCCCTGCAGCTCGTCGTCGTCGTTGCTGCTGCTTGTGCTGCTCCTCCTGCTCGTCTTCTTCGCGCACCACGGCAGCTGCAGCAGGCCTCTGCTTCTCCCGTCGCCGACGACGCCGATGCAGCCGCAGCTGAAGCACGAATCGGAGACAGCATCAGCAGATACGACGACGAGGACTGAAGAACAAGTGGTGCAGCAGCAGCAGCTGTCTTGGTTGAGAAGTATGAAGCCCAGAGGAAGGCCACAACCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTGCTCGTACTTGCCATCTTCCTCTTCCTCCTCTGTAGGCTCTCGATCTTAGTTGTGTATGTATGAGTGTATGACACAGGCTACTTCTTTTTCTTGTTTCTTTTTATCTGTTGATTTGTTGGATATACAGAAACTATGTACATATATATATA CATGAGATCGATTTGCTAGCTAAAAA ] [+] EMBL AU085733 [ ACAAGGAGATCACAACAATGGCCACATTGCTATTGTCAAGCAACAAGAAGCCCTGCAGCTCGTCGTCGTCGTTGCTGCTGCTTGTGCTGCTCCTCCTGCTCGTCTTCTTCGCGCACCACGGCAGCTGCAGCAGGCCTCTGCTTCTCCCGTCGCCGACGACGCCGATGCAGCCGCAGCTGAAGCACGAATCGGAGACAGCATCAGCAGATACGACGACGAGGACTGAAGAACAAGTGGTGCAGCAGCAGCAGCTGTCTTGGTTGAGAAGTATGAAGCCCAGANGAAGGCCACAACCATCCAGCCCCAGCAAGCGCACAAATTAGCTTAGCTAGCTGCTCGTACTTG CATCTT CTCTTCCT ] [-] EMBL CF321532 [ TCAAGCAACAAGAAGCCCTGCAGCTCGTCGTCGTCGTTGCTGCTGCTTGTGCTGCTCCTCCTGCTCGTCTTCTTCGCGCACCACGGCAGCTGCAGCAGGCCTCTGCTTCTCCCGTCGCCGACGACGCCGATGCAGCCGCAGCTGAAGCACGAATCGGAGACAGCATCAGCAGATACGACGACGAGGACTGAAGAACAAGTGGTGCAGCAGCAGCAGCTGTCTTGGTTGAGAAGTATGAAGCCCAGAGGAAGGCCACAACCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTGCTCGTACTTGCCATCTTCCTCTTCCTCCTCTGTAGGCTCTCGATCTTAGTTGTGTATGTATGAGTGTATGACACAGGCTACTTCTTTTTCTTGTTTCTTTTTATCTGTTGATTTGTTGGATATACAGAAACTATGTACATATATATATA CATGAGATCGATTTGCTAGCTAAAAAA ] consensusID : consensus_15378#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 423 fasta sequence [CGCCGACGACGCCGATGCAGCCGCAGCTGAAGCNCGAATCGGAGACAGCATCAGCAGATACGNCGACGCGGACTGNAGAACAAGTGGTGCAGCAGCAGCAGNTGTCTTGGTTGAGAAGTATGAAGCCCAGAGGNAGGCCACAACCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTGCTCGTACTTGCCATCTTCCTCTTCCTCCTNTGTAGGCTCTCGATCTTAGTTGTGTATGTATGAGTGTATGACACAGGCTACTTCTTTTTCTTGTTTCTTTTTATCTGTTGATTTGTTGGATATACAGAAACTATGTACATATATATATACATGAGATCGATTTGCTAGCTAGTTCGCAACAACTAATGGAACGTTTTTCTTTGGTTTCCCCTGCAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU085734 [CGCCGACGACGCCGATGCAGCCGCAGCTGAAGCNCGAATCGGAGACAGCATCAGCAGATACGNCGACGCGGACTGNAGAACAAGTGGTGCAGCAGCAGCAGNTGTCTTGGTTGAGAAGTATGAAGCCCAGAGGNAGGCCACAACCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTGCTCGTACTTGCCATCTTCCTCTTCCTCCTNTGTAGGCTCTCGATCTTAGTTGTGTATGTATGAGTGTATGACACAGGCTACTTCTTTTTCTTGTTTCTTTTTATCTGTTGATTTGTTGGATATACAGAAACTATGTACATATATATATACATGAGATCGATTTGCTAGCTAGTTCGCAACAACTAATGGAACGTTTTTCTTTGGTTTCCCCTGCAAAAA ] [-] EMBL CF318831 [ CAGCATCAGCAGATACGACGACGAGGATTGAAGAACAAGTGGTGCACCACCAGCAGCTGTTTTGGTTGAGAAGTATGAAGCCCAGAGGAAGGCCCCACCCATCCAGCCCCAGCAAGCGCACAAACTAGCTTAGCTAGCTGTTGGTACTTGCCATTTTCCTCTTCCTCCTCTGTAGGCTCTCGATCTTAGTTGTGTATGTATGAGTGTATGACCCAGGCTACTTCTTTTTCTTGTTTCTTTTTATCTGTTGATTTGTTGGATATCCAGAAACTATGTACATATATATATACATGAGATCGATTTGCTAGCTAGTTCGCACCAACTAATGGAACGTTTTTCTTTGGTTTCCCCTGCAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15378#0 TTATCTACATCTTCTTCTGCTTCTTCCTTCCAGCTTGCAAAACTGGCTTAATTGATTCCA 60 consensus_15378#1 ------------------------------------------------------------ consensus_15378#2 ------------------------------------------------------------ consensus_15378#3 ------------------------------------------------------------ consensus_15378#0 TATTTCCATTCCACACGTCTTGAGAGCTAATCTTTTGGAAGAGGAAACACGTCTTAGCTT 120 consensus_15378#1 ------------------------------------------------------------ consensus_15378#2 ------------------------------------------------------------ consensus_15378#3 ------------------------------------------------------------ consensus_15378#0 GAGTTAATAATTCCATCGATCGTCTCCTCTCCATTGACTTTAATTGAAACGCCCCCTTTT 180 consensus_15378#1 ------------------------------------------------------------ consensus_15378#2 ------------------------------------------------------------ consensus_15378#3 ------------------------------------------------------------ consensus_15378#0 CTTCGCTCTGCGGCTACCTATCTCTTGTATTTATATCCCGGATAGCTACCTGTGCTTCAA 240 consensus_15378#1 --------------------------------------TGGACTGA-AGGAGTAGAAAAA 21 consensus_15378#2 -------------------------------------------GGACCTGCCTGGACTGA 17 consensus_15378#3 ------------------------------------------------------------ consensus_15378#0 TTCCTCTGCAAATCCATCCATATTAGCTTCCAACACAAGGAGATCACAACAATGGCCACA 300 consensus_15378#1 TTCCTCTGCAATCCT---CCTATTAGCTTCCAACACAAGGAGATC-CAACAATGGCC-CA 76 consensus_15378#2 AGAGTGAAAAAATCCATCCATATTAGCTTCCAACACAAGGAGATCACAACAATGGCCACA 77 consensus_15378#3 ------------------------------------------------------------ consensus_15378#0 TTGCTATTGTCAAGCAACAAGAAGCCCTGCAGCTCGTCGTCGTCGTTGCTGCTGCTTGTG 360 consensus_15378#1 TTGCT-TTGTCAG--CACAGAA---CCTGCG--CTGTCGTCGTCGTTGCTGCTGCTTGTG 128 consensus_15378#2 TTGCTATTGTCAAGCAACAAGAAGCCCTGCAGCTCGTCGTCGTCGTTGCTGCTGCTTGTG 137 consensus_15378#3 ------------------------------------------------------------ consensus_15378#0 CTGCTCCTCCTGCTCGTCTTCTTCGCACACCACGGCAGTTGCAGCAGGCCTCTGCCTCTT 420 consensus_15378#1 CTGCTCCTCCTGCTCGTCTTCTTCGCACACCACGGCAGTTGCAGCAGGCCTCTGCCTCTT 188 consensus_15378#2 CTGCTCCTCCTGCTCGTCTTCTTCGCGCACCACGGCAGCTGCAGCAGGCCTCTGCTTCTC 197 consensus_15378#3 ------------------------------------------------------------ consensus_15378#0 CCGTCGCCGACG---CCGATGCAGCCACAGCTGAAGCACGAATCGGAGACAGCATCAGCA 477 consensus_15378#1 CCGTCGCCGACG---CCGATGCAGCCACAGCTGAAGCACGAATCGGAGACAGCATCAGCA 245 consensus_15378#2 CCGTCGCCGACGACGCCGATGCAGCCGCAGCTGAAGCACGAATCGGAGACAGCATCAGCA 257 consensus_15378#3 ----CGCCGACGACGCCGATGCAGCCGCAGCTGAAGCNCGAATCGGAGACAGCATCAGCA 56 ******** *********** ********** ********************** consensus_15378#0 GATACGACGACGACGACTGAAGAACAAGTGATGCAGCAGCAGC---TGTCTTGGTTGAGA 534 consensus_15378#1 GATACGACGACGACGACTGAAGAACAAGTGATGCAGCAGCAGC---TGTCTTGGTTGAGA 302 consensus_15378#2 GATACGACGACGAGGACTGAAGAACAAGTGGTGCAGCAGCAGCAGCTGTCTTGGTTGAGA 317 consensus_15378#3 GATACGNCGACGCGGACTGNAGAACAAGTGGTGCAGCAGCAGCAGNTGTCTTGGTTGAGA 116 ****** ***** ***** ********** ************ ************** consensus_15378#0 AGCATGAAGCCCAGAGGGAGGCCACAGCCATCCAGCCCCAGCAAGCGCACAAACTAGCTT 594 consensus_15378#1 AGCATGAAGCCCAGAGGGAGGCCACAGCCATCCAGCCCCAGCAAGCGCACAAACTAGCTT 362 consensus_15378#2 AGTATGAAGCCCAGAGGAAGGCCACAACCATCCAGCCCCAGCAAGCGCACAAACTAGCTT 377 consensus_15378#3 AGTATGAAGCCCAGAGGNAGGCCACAACCATCCAGCCCCAGCAAGCGCACAAACTAGCTT 176 ** ************** ******** ********************************* consensus_15378#0 AGCTAGCTACTCGTATTTGCCCTCTTCCTCTCCCTCCTCTGTAGGCTTTCTATCTTAGTT 654 consensus_15378#1 AGCTAGCTACTCGTATTTGCCCTCTTCCTCTCCCTCCTCTGTAGGCTTTCTATCTTAGTT 422 consensus_15378#2 AGCTAGCTGCTCGTACTTGCCATCTTCCTCTTCCTCCTCTGTAGGCTCTCGATCTTAGTT 437 consensus_15378#3 AGCTAGCTGCTCGTACTTGCCATCTTCCTCTTCCTCCTNTGTAGGCTCTCGATCTTAGTT 236 ******** ****** ***** ********* ****** ******** ** ********* consensus_15378#0 GTGTATGTATGAGTGTATGACACACGCTACTTGTTTTTCTTGTTTCATTCTTTTTGTTGA 714 consensus_15378#1 GTGTATGTATGAGTGTATGACACACGCTACTTGTTTTTCTTGTTTCATTCTTTTTGTTGA 482 consensus_15378#2 GTGTATGTATGAGTGTATGACACAGGCTACTTCTTTTTCTTGTTTCTTTTTATCTGTTGA 497 consensus_15378#3 GTGTATGTATGAGTGTATGACACAGGCTACTTCTTTTTCTTGTTTCTTTTTATCTGTTGA 296 ************************ ******* ************* ** * * ****** consensus_15378#0 TTTGTTCGATATACAGAAACTATGTACATATATACA--CATGAGATCGATTTGCTAGTTA 772 consensus_15378#1 TTTGTTCGATATACAGAAACTATGTACATATATACA--CATGAGATCGATTTGCTAGTTA 540 consensus_15378#2 TTTGTTGGATATACAGAAACTATGTACATATATATATACATGAGATCGATTTGCTAAAAA 557 consensus_15378#3 TTTGTTGGATATACAGAAACTATGTACATATATATATACATGAGATCGATTTGCTAGCTA 356 ****** *************************** * ****************** * consensus_15378#0 GTTCGCAACAATTAATGGAACGTTATTCTTTGGTTTCAAAAAAAGTTTTCTGAAAAAAAA 832 consensus_15378#1 GTTCGCAACAATTAATGGAACGTTATTCTTTGGTTTCAAAAA------------------ 582 consensus_15378#2 AAAAAAA----------------------------------------------------- 564 consensus_15378#3 GTTCGCAACAACTAATGGAACGTTTTTCTTTGGTTTCCCCTGCAAAAAAAAAAAAAAAAA 416 * consensus_15378#0 A------ 833 consensus_15378#1 ------- consensus_15378#2 ------- consensus_15378#3 AAAAAAA 423 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||