These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15384#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 16 consensus length = 1291 fasta sequence [TGGCGCCCCACCATTCCCTTCTACTAGTGGCGGAACCTCTCTGACCTCTCCTTTCTCTCTCCCTCCTCTTCGGCGGCCGCCTCCCCCCTCCCCCCCTTCCCCAA------GCCGCCGCCGCCGCCATGGCCATGAAGGGACCCGGCCTCTTCTCCGACATTGGCAAGAGGGCCAAGGATCTGCTCACCAAGGACTACACCTATGACCAGAAGCTGACCGTCTCCACCGTCAGCTCCTCCGGAGTGGGCCTCACTTCCACAGCTGTGAAGAAAGGGGGGCTTTATACTCTTGATGTCAGCTCAGTTTACAAGTACAAGAGTACTCTCGTCGATGTCAAAGTGGACACAGAATCTAATATCTCTACTACTTTGACTGTGTTTGATGTCCTTCCATCCACAAAGCTTG-TGACAAGTGTCAAGCTGCC-TGACTACAATTC-TGGAAAGGTGGAGATGCAATACTTCCATGAGAATGCAAGTTTTGCCACTGCTGTTGGCATGAAGCCATCTCC-TGTGGTTGAATTTT-CTGGAACAGCTGGTGCTCAAGGACTTGCCTTTGG-TGCAGAAGCTGGG-TTTGACACTGCTACAGGAAAATTTACCAAG-TACAGTGC-TGCG-ATAGG-TGTAACCAAGCCAGATTATCATGCTGCAATCGTT-CTGGCGGACAAAGGTGACA-CC-GTTAAAGTGTCAGGTG-TATATCA-CC-TTGATG-ATAAGCAGAAAT-CCTCTG-TT-GTTGC-TGA-ATTAACCCGCAGGCTCTCAACAAATGAGAACACTCT-CAC-TG-TTGGTGGCCTG-TACAAGGTTGACCCCGAGACAGCTGTGAAGGCAAGGCTCAACAACACTGGAAAGCTTGCTGCTCTTCTCCAGCATGAGGTTAAACCCAAGTCGGTTTTGACAATCT-CTGGTGAATTCGACA-CCAAGGCCTTGGACAGACCCCCCAAGTTTGGTCTAGCGCTTGCACTCAGGCCCTGATAACATCGTCTGT-GGTT-GATGGCTGTTAAATTTCGAATTCTTTGGTT-GTTTTGCAAAGCAAT-GGCCAATAA-TTTGTTCCGCA-G-ACCTGTTACTTCAATCTTTTAAAGTTTTGCTGCTCTGTGGGCAGGAGCCAATGGGTGTTTTACATGATTTTATCCGCTACTTCTGTTGATGAAAGCATCTAGTCATTGTTAGATGTATGCTGTTTTCCTCTCTTTCTTAGCTTAAAGCTCACTTTCTATGTACTACTGAGGTGCCATGCCACCAGTAGTCTATATTGATATTCCTTGCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AK121020 [TGGCGCCCCACCATTCCCTTCTACTAGTGGCGGAACCTCTCTGACCTCTCCTTTCTCTCTCCCTCCTCTTCGGCGGCCGCCTCCCCCCTCCCCCCCTTCCCCAA GCCGCCGCCGCCGCCATGGCCATGAAGGGACCCGGCCTCTTCTCCGACATTGGCAAGAGGGCCAAGGATCTGCTCACCAAGGACTACACCTATGACCAGAAGCTGACCGTCTCCACCGTCAGCTCCTCCGGAGTGGGCCTCACTTCCACAGCTGTGAAGAAAGGGGGGCTTTATACTCTTGATGTCAGCTCAGTTTACAAGTACAAGAGTACTCTCGTCGATGTCAAAGTGGACACAGAATCTAATATCTCTACTACTTTGACTGTGTTTGATGTCCTTCCATCCACAAAGCTTG TGACAAGTGTCAAGCTGCC TGACTACAATTC TGGAAAGGTGGAGATGCAATACTTCCATGAGAATGCAAGTTTTGCCACTGCTGTTGGCATGAAGCCATCTCC TGTGGTTGAATTTT CTGGAACAGCTGGTGCTCAAGGACTTGCCTTTGG TGCAGAAGCTGGG TTTGACACTGCTACAGGAAAATTTACCAAG TACAGTGC TGCG ATAGG TGTAACCAAGCCAGATTATCATGCTGCAATCGTT CTGGCGGACAAAGGTGACA CC GTTAAAGTGTCAGGTG TATATCA CC TTGATG ATAAGCAGAAAT CCTCTG TT GTTGC TGA ATTAACCCGCAGGCTCTCAACAAATGAGAACACTCT CAC TG TTGGTGGCCTG TACAAGGTTGACCCCGAGACAGCTGTGAAGGCAAGGCTCAACAACACTGGAAAGCTTGCTGCTCTTCTCCAGCATGAGGTTAAACCCAAGTCGGTTTTGACAATCT CTGGTGAATTCGACA CCAAGGCCTTGGACAGACCCCCCAAGTTTGGTCTAGCGCTTGCACTCAGGCCCTGATAACATCGTCTGT GGTT GATGGCTGTTAAATTTCGAATTCTTTGGTT GTTTTGCAAAGCAAT GGCCAATAA TTTGTTCCGCA G ACCTGTTACTTCAATCTTTTAAAGTTTTGCTGCTCTGTGGGCAGGAGCCAATGGGTGTTTTACATGATTTTATCCGCTACTTCTGTTGATGAAAGCATCTAGTCATTGTTAGATGTATGCTGTTTTCCTCTCTTTCTTAGCTTAAAGCTCACTTTCTATGTACTACTGAGGTGCCATGCCACCAGTAGTCTATATTGATATTCCTTGCAC ] [+] EMBL AU173384 [ CCTCTCCTTTCTCTCTCCCTCCTCTTCGGCGGCCGCCTCCCCCCTCCCCCCCTTCCCCAA GCCGCCGCCGCCGCCATGGCCATGAAGGGACCCGGCCTCTTCTCCGACATTGGCAAGAGGGCCAAGGATCTGCTCACCAAGGACTACACCTATGACCAGAAGCTGACCGTCTCCACCGTCAGCTCCTCCGGAGTGGGCCTCACTTCCACAGCTGTGAAGAAAGGGGGGCTTTATACTCTTGATGTCAGCTCAGTTTACAAGTACAAGAGTACTCTCGTCGATGTCAAAGTGGACACAGAATCTAATATCTCTACTACTTTGACTGTGTTTGATGTCCTTCCATCCACAAAGCTTG TGACAAGTGTCAAGCTGCC TGACTACAATTC TGGAAAGGGGGAGATGCAATACTTCCATGAGAATGCAAGTTTTGCCACT ] [+] EMBL AF074806 [ TCCCCCCTCCCCCCCTTCCCCAAGCCGCCGCCGCCGCCGCCGCCATGGCCATGAAGGGACCCGGCCTCTTCTCCGACATTGGCAAGAGGGCCAAGGATCTGCTCACCAAGGACTACACCTATGACCAGAAGCTGACCGTCTCCACCGTCAGCTCCTCCGGAGTGGGCCTCACTTCCACAGCTGTGAAGAAAGGGGGGCTTTATACTCTTGATGTCAGCTCAGTTTACAAGTACAAGAGTACTCTCGTCGATGTCAAAGTGGACACAGAATCTAATATCTCTACTACTTTGACTGTGTTTGATGTCCTTCCATCCACAAAGCTTGTTGACAAGTGTCAAGCTGCCTTGACTACAATTCTTGGAAAGGTGGAGATGCAATACTTCCATGAGAATGCAAGTTTTGCCACTGCTGTTGGCATGAAGCCATCTCCTTGTGGTTGAATTTTCCTGGAACAGCTGGTGCTCAAGGACTTGCCTTTGGTTGCAGAA CTGGGTTTTGAAACTGCTACAGGAAAATTTACCAAGTTACAGTGCTTGCGAATAGGTTTTTACCAACCCAGATTATCATGCTGCAATCNTTCCTGGCGGA AAAAGTGACACCC GTTAAATTTTCNGGTGTTTTATCA CCTTTGATGAATAANCA AAAT CCTCTGTTT GTTGCTTGA ATTAACCC CAGG TCTCCACAAATGAAAACACTCT CCCTTGTTTGGTNGCCTGTTACAA ] [+] EMBL AU062398 [ TCCCCCCCTTCCCCAA GCCGCCGCCGCCGCCATGGCCATGAAGGGACCCGGCCTCTTCTCCGACATTGGCAAGAGGGCCAAGGATCTGCTCACCAAGGACTACACCTATGACCAGAAGCTGACCGTCTCCACCGTCAGCTCCTCCGGAGTGGGCCTCACTTCCACAGCTGTGAAGAAAGGGGGGCTTTATACTCTTGATGTCAGCTCAGTTTACAAGTACANGAGTACTCTCGTCGATGTCAAAGTGGACACAGAATCTAATATCTCTACTACTTTGACTGTGTTTGATGTCCTTCCATCCACAAAGCTTG TGACAAGTGTCAAGCTGCC TGACTACAATTC TGGAAAGGTGGAGATGCAATACTT ] [+] EMBL AY224468 [ AAGGGACCCGGCCTCTTCTCCGACATTGGCAAGAGGGCCAAGGATCTGCTCACCAAGGACTACACCTATGACCAGAAGCTGACCGTCTCCACCGTCAGCTCCTCCGGAGTGGGCCTCACTTCCACAGCTGTGAAGAAAGGGGGGCTTTATACTCTTGATGTCAGCTCAGTTTACAAGTACAAGAGTACTCTCGTCGATGTCAAAGTGGACACAGAATCTAATATCTCTACTACTTTGACTGTGTTTGATGTCCTTCCATCCACAAAGCTTG TGACAAGTGTCAAGCTGCC TGACTACAATTC TGGAAAGGTGGAGATGCAATACTTCCATGAGAATGCAAGTTTTGCCACTGCTGTTGGCATGAAGCCATCTCC TGTGGTTGAATTTT CTGGAACAGCTGGTGCTCAAGGACTTGCCTTTGG TGCAGAAGCTGGG TTTGACACTGCTACAGGAAAATTTACCAAG TACAGTGC TGCG ATAGG TGTAACCAAGCCAGATTATCATGCTGCAATCGTT CTGGCGGACAAAGGTGACA CC GTTAAAGTGTCAGGTG TATATCA CC TTGATG ATAAGCAGAAAT CCTCTG TT GTTGC TGA ATTAACCCGCAGGCTCTCAACAAATGAGAACACTCT CAC TG TTGGTGGCCTG TACAAGGTTGACCCCGAGACAGCTGTGAAGGCAAGGCTCAACAACACTGGAAAGCTTGCTGCTCTTCTCCAGCATGAGGTTAAACCCAAGTCGGTTTTGACAATCT CTGGTGAATTCGACA CCAAGGCCTTGGACAGACCCCCCAAGTTTGGTCTAGCGCTTGCACT ] [+] EMBL CA999978 [ CTGACCGTCTCCACCGTCAGCTCCTCCGGAGTGCGTTTCACTTCCACAGCTGTGAAGAAAGGGGGGCTTTATACTCTTGATGTCAGCTCAGTTTACAAGTACAAGAGTACTCTCGTCGATGTCAAAGTGGACACAGAATCTAATATCTCTACTACTTTGACTGTGTTTGATGTCCTTCCATCCACAAAGCTTG TGACAAGTGTCAAGCTGCC TGACTACAATTC TGGAAAGGTGGAGATGCAATACTTCCATGAGAATGCAAGTTTTGCCACTGCTGTTGGCATGAAGCCATCTCC TGTGGTTGAATTTT CTGGAACAGCTGGTGCTCAAGGACTTGCCTTTGG TGCAGAAGCTGGG TTTGAGACTGCTACAGGAAAATTTACCAAG TACAGTGC TGCG ATAGG TGTAACCAAGCCAGATTATCATGCTGCAATCGTT CTGGCGGACAAAGGTGACA CCGGTTAAAGTGTCAGGTG TATATCA CC TTGATG ATAAGCA ] [+] EMBL CA998440 [ TGACCGTCTCCACCGTCAGCTCCTCCGGAGTGGGCCTCACTTCCACAGCTGTGAAGAAAGGGGGGCTTTATACTCTTGATGTCAGCTCAGTTTACAAGTACAAGAGTACTCTCGTCGATGTCAAAGTGGACACAGAATCTAATATCTCTACTACTTTGACTGTGTTTGATGTCCTTCCATCCACAAAGCTTG TGACAAGTGTCAAGCTGCC TGACTACAATTC TGGAAAGGTGGAGATGCAATACTTCCATGAGAATGCAAGTTTTGCCACTGCTGTTGGCATGAAGCCATCTCC TGTGGTTGAATTTT CTGGAACAGCTGGTGCTCAAGGACTTGCCTTTGG TGCAGAAGCTGGG TTTGACACTGCTACAGGAAAATTTACCAAG TACAGTGC TGCG ATAGG TGTAACCAAGCCAGATTATCATGCTGCAATCGTT CTGGCGGACAAAGGTGACA CC GTTAAAGTGTCAGGTG TATATCA CC TTGATG ATAAGCAGAAAT CCTCTG TT GTTGC TGA ATTAACCCGCAGGCTCTCAACAAATGAGAACACTCT CAC TG TTGGTGGCCTG TACAAGGTTGACCCCGAGACAGCTGTGAAGGCAAGGCTCAACAACACTGGAAAGCTTGCTGCTCT ] [+] EMBL D43177 [ ATCATGCTGCAATCGTT CTGGCGGACAAAGGTGACA CC GTTAAAGTGTCAGGTG TATATCA CC TTGATG ATAAGCAGAAAT CCTCTG TT GTTGC TGA ATTAACCCGCAGGCTCTCAACAAATGAGAACACTCT CAC TG TTGGTGGCCTG TACAAGGTTGACCCCGAGACAGCTGTGAAGGCAAGGCTCAACAACACTGGAAAGCTTGCTGCTCTTCTCCAGCATGAGGTTAAACCCAAGTCGGTTTTGACAATCTCCTGGTGAATTCGGCACCCAAGGCCTTGGNCAGACCCCCCA ] [+] EMBL AA749597 [ AGGTGACA CC GTTAAAGTGTCAGGTG TATCA CC TTGATG ATAAGCAGAAAT CCTCTG TT GTTGC TGA ATTAACCCGCA GCTCTCAACAAATGAGAACACTCT CAC TG TTGGTGGCCTG TACAAGGTTGACCCCGAGACAGCTGTGAAGGCAAGGCTCAACAACACTGGAAAGCTTGCTGCTCTTCTCCAGCAT ] [+] EMBL AU082590 [ GTGACA CC GTTAAAGTGNCAGGTG TATATCA CC TTGATG ATAAGCAGAAAT CCTCTG TT GTTGC TGA ATTAACCCGCAGGCTCTCAACAAATGAGAACANTCT CAC TG TTGGTGNCCTG TACAAGNTTGACCCCGAGACAGCTNTGAAGGCAAGGCTCAACAACACTGGAAAGNTTGCTGCTCTTCTCCAGCATGAGGTTAAACCCAAGTCGGTTTTGACAATCT CTGGTGAATTCGACA CCAAGGCCTTGGACAGNCCCCCCAAGTTTGGTCTAGCGCTTGCACTCAGGCCCTGATAACATCGTCTGT GGTT GATGGCTGTTAAATTTCGAATTCTTTGGTT GTTTTGCAAAGCAAT GGCCAATAA TTTGTTCCGCA G ACCTGTTACTTCAATCTTTTAAAGTTTTGCTGCTCTGTGGGCAGGAGCCAATGGGTGTTTTACATGATTTTATCCGCTACTTCTGTTGATGAAAGCATCTAGTCATTGTTAGATGTATGCTGTTTTCCTCTCTTTCTTAGCTTAAAGCTCACTTTCTATGTACTACTGAGGTGCCATGCCACCAGTAGTCTATATTGATATTCCTTGCACAAAAAAAA ] [+] EMBL C27072 [ GACA CC GTTAAAGTGTCAGGTG TATATCA CC TTGATG ATAAGCAGAAAT CCTCTG TT GTTGC TGA ATTAACCCGCA GCTCTCAACAAATGAGAACACTCT CAC TG TTGGTGGCCTG TACAAGGTTGACCCCGAGACAGCTGTNAAGGCAAGGCTCAACAACACTGGAAAGCTTGCTGCTCTTCTCCAGCATGAGGTTAAACCCAAGTCGGTTTTGACAATCT CTGGTGAATTCGACA CCAAGGCCTTGGACAGACCCCCCAAGTTTGGTCTAGCGCTTGCACTCAGGCCCTGATAACATCGTCTGTGGGTTGGATGGCTGTTAAATTTCGGATTCTTTGGTTGGTTTTGCAAAGCAATGGGCCAATAATTTTGTTCCGCAGG ACCTGTTACTTCAATCTT ] [+] EMBL BI797880 [ TAAAGTGTCAGGTG TATATCATCC TTGATG ATAAGCAGAAATGCCTCTG TTGGTTGC TGATATTAACCCGCAGGCTCTCAACAAATGAGAACACTCTGCAC TG TTGGTGGCCTG TACAAGGTTGACCCCGAGACAGCTGTGAAGGCAAGGCTCAACAACACTGGAAAGCTTGCTGCTCTTCTCCAGCATGAGGTTAAACCCAAGTCGGTTTTGACAATCT CTGGTGAATTCGACA CCAAGGCCTTGGACAGACCCCCCAAGTTTGGTCTAGCGCTTGCACTCAGGCCCTGATAACATCGTCTGT GGTT GATGGCTGTTAAATTTCGAATTCTTTGGTT GTTTTGCAAAGCAAT GGCC ATAA TTTGTTCCGCA G ACCTGTTACTTCAAaaaaaaaa ] [+] EMBL C73766 [ GTCAGGTG TATATCA CC TTGATG ATAAGCAGAAAT CCTCTG TT GTTGC TGA ATTAACCCGCA GCTCTCAACAAATGAGAACACTCT CAC TG TTGGTGGCCTG TACAAGGTTGACCCCGAGACAGCTGTGAAGGCAAGGCTCAACAACACTGGAAAGCTTGCTGCTCTTCTNCAGCATGAGGTTAAACCCAAGTCGGNTTTNACAATCT CTNGTCAATTCGACA CCAAGGCCTTG ] [+] EMBL OS0038A [ CTCTG TT GTTGC TGA ATTAACCCGCA GCTCTCAACAAATGAGAACACTCT CAC TG TTGGTGGCCTG TACAAGGTTGACCCCGAGACAGCTGTTAAGGCAAGGCTCAACAACACTGGAAAGCTTGCTGCTCTTCTCCAGCATGAGGTTAAACCCAAGTCGGTTTTGACAATCT CTGGTGAATTCGACA CCAAGGCCTTGGACAGACCCCCCAAGTTTGGTCTAGCGCTTGCACTCAGGCCCTGATAACATCGTCTGT GGTT GATGGCTGTTAAATTTCGAATTCTTTGGTT GTTTTGCAAAGCAAT GGCCA ] [+] EMBL AU173385 [ CAACACTGGAAAGCTTGCTGCTCTTCTCCAGCATGAGGTTAAACCCAAGTCGGTTTTGACAATCT CTGGTGAATTCGACA CCAAGGCCTTGGACAGACCCCCCAAGTTTGGTCTAGCGCTTGCACTCAGGCCCTGATAACATCGTCTGT GGTT GATGGCTGTTAAATTTCGAATTCTTTGGTT GTTTTGCAAAGCAAT GGCCAATAA TTTGTTCCGCA G ACCTGTTACTTCAATCTTTTAAAGTTTTGCTGCTCTGTGGGCAGGAGCCAATGGGTGTTTTACATGATTTTATCCGCTACTTCTGTTGATGAAAGCATCTAGTCATTGTTAGATGTATGCTGTTTTCCTCTCTTTCTTAGCTTAAAGCTCACTTTNTATGTACTACTGAGGTGCCATGCCACCAGTAGTCTATATTGATATTCCTTGCAAAAAAAAA ] [+] EMBL AU164172 [ TCTGT GGTT GNTGGCTGTTAAA TTCGAA TCTTTGGTT GTTTTGC AAGC AT GGCCNATAA TTTGTTCCGCA GAACCTGTTACTTCAATCTTTTAAAGTTTTGCTGCTCTGTGGGCAGGAGCCNATGGGTGTTTTACATGATTTTATCCGCTACTTCTGTTGATGAAAGCATCTAGTCATTGTTAGATGTATGCTGTTTTCCTCTCTTTCTTAGCTTNAAGCTCACTTTCTATGTACTACTGAGGTGCCATGCCNCCNGTAGTNTNTATTGATATTCCTTGCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_15384#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 818 fasta sequence [GCTTTATACTCTTGATGTCAGCTCAGTTTACAAGTACAAGAGTACTCTCGTCGATGTCAAAGTGGACACAGAATCTAATATCTCTACTACTTTGACTGTGTTTGATGTCCTTCCATCCACAAAGCTTGTGACAAGTGTCAAGCTGCCTGACTACAATTCTGGAAAGGTGGAGATGCAATACTTCCATGAGAATGCAAGTTTTGCCACTGCTGTTGGCATGAAGCCATCTCCTGTGGTTGAATTTTCTGGAACAGCTGGTGCTCAAGGACTTGCCTTTGGTGCAGAAGCTGGGTTTGACACTGCTACAGGAAAATTTACCAAGTACAGTGCTGCGATAGGTGTAACCAAGCCAGATTATCATGCTGCAATCGTTCTGGCGGACAAAGGTGACACCGTTAAAGTGTCAGGTGTATATCACCTTGATGATAAGCAGAAATCCTCTGTTGTTGCTGAATTAACCCGCAGGCTCTCAACAAATGAGAACACTCTCACTGTTTGGTGGCCTGTACAAGGTTGACCCCGAGACAGCTGTGAAGGCAAGGCTCAACAACACTGGAAAGCTTGCTGCTCTTCTCAGCATGANGTTAACCAAGTTCGGTTTTGAAATCTCTGGTGAATTCGACACAAGGCCTTGGAAACCCCCAAATTTTGGCTAGCGCTTGACTCAGCCCTGAAATCGCTGGGGGGTTGAGGGTTGTAAATTCCAATTTTTGGGGTTGTTTTCAAACCATGGCCAATATTTTTATCCAAGACTGTACTTTAATTTTTAAAAGTTTGGCGATCTGGGGCCGGAGCACCGGGCGACGCCGTCGTGATAT] [+] EMBL CA758220 [GCTTTATACTCTTGATGTCAGCTCAGTTTACAAGTACAAGAGTACTCTCGTCGATGTCAAAGTGGACACAGAATCTAATATCTCTACTACTTTGACTGTGTTTGATGTCCTTCCATCCACAAAGCTTGTGACAAGTGTCAAGCTGCCTGACTACAATTCTGGAAAGGTGGAGATGCAATACTTCCATGAGAATGCAAGTTTTGCCACTGCTGTTGGCATGAAGCCATCTCCTGTGGTTGAATTTTCTGGAACAGCTGGTGCTCAAGGACTTGCCTTTGGTGCAGAAGCTGGGTTTGACACTGCTACAGGAAAATTTACCAAGTACAGTGCTGCGATAGGTGTAACCAAGCCAGATTATCATGCTGCAATCGTTCTGGCGGACAAAGGTGACACCGTTAAAGTGTCAGGTGTATATCACCTTGATGATAAGCAGAAATCCTCTGTTGTTGCTGAATTAACCCGCAGGCTCTCAACAAATGAGAACACTCTCACTGTTTGGTGGCCTGTACAAGGTTGACCCCGAGACAGCTGTGAAGGCAAGGCTCAACAACACTGGAAAGCTTGCTGCTCTTCTCAGCATGANGTTAACCAAGTTCGGTTTTGAAATCTCTGGTGAATTCGACACAAGGCCTTGGAAACCCCCAAATTTTGGCTAGCGCTTGACTCAGCCCTGAAATCGCTGGGGGGTTGAGGGTTGTAAATTCCAATTTTTGGGGTTGTTTTCAAACCATGGCCAATATTTTTATCCAAGACTGTACTTTAATTTTTAAAAGTTTGGCGATCTGGGGCCGGAGCACCGGGCGACGCCGTCGTGATAT] consensusID : consensus_15384#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 703 fasta sequence [GCCTCCCCCCTCCCCCCCTTCCCCAAGCCGCCGCCGCCGCCGCCGCCATGGCCATGAAGGGACCCGGCCTCTTCTCCGACATTGGCAAGANGGCCAAGGATCTGCTCACCAAGGGACTACACCTATGACCAGAAGCTGACCGTCTCCACCGTCAGCTCCTCCGGANTGGGCCTCACTTCCACAGCTGTNAAAAAAGGGGGGCTTTATACTCTTGATGTCAGCTCAGTTTACAAGTNCAANANTACTCTCGTCGATGTCAAAGTGGACACAGAATCTAATATCTCTACTACTTTGACTGTGTTTGATGTCCTTCCATCCACAAAGCTTGTGACAAGTGTCNAGCTGCCTGACTACAATTCTGGAAAGGTGGANATGCNATACTTCCNTGAAAATGCAAGTTTTGCCNCTGCTGTTGGCATGAAACCATCTCCTGTGGTTGAATTTTCTGGAACANCTGGTGCTCAANGANTTGCCTTTGGTGCAAAACTGGGTTTGACACTGCTACAGGAAAATTTACCAAGTNCAGTGCTGCGANAAGTGTTACCAACCANATTATCATGCTGCAATCGTTCTGGCGGANAAAAGTGANACCGTTAAATTTTCNGTGTTTATCCCCTTGATGANAAACAAAAATCCCTGTTGTTGCTGAATTAACCCCAGNTCTCCACNAATGAAAANACCTCCTGTTNGTGGCCGTTNAAGT] [+] EMBL AF074772 [GCCTCCCCCCTCCCCCCCTTCCCCAAGCCGCCGCCGCCGCCGCCGCCATGGCCATGAAGGGACCCGGCCTCTTCTCCGACATTGGCAAGANGGCCAAGGATCTGCTCACCAAGGGACTACACCTATGACCAGAAGCTGACCGTCTCCACCGTCAGCTCCTCCGGANTGGGCCTCACTTCCACAGCTGTNAAAAAAGGGGGGCTTTATACTCTTGATGTCAGCTCAGTTTACAAGTNCAANANTACTCTCGTCGATGTCAAAGTGGACACAGAATCTAATATCTCTACTACTTTGACTGTGTTTGATGTCCTTCCATCCACAAAGCTTGTGACAAGTGTCNAGCTGCCTGACTACAATTCTGGAAAGGTGGANATGCNATACTTCCNTGAAAATGCAAGTTTTGCCNCTGCTGTTGGCATGAAACCATCTCCTGTGGTTGAATTTTCTGGAACANCTGGTGCTCAANGANTTGCCTTTGGTGCAAAACTGGGTTTGACACTGCTACAGGAAAATTTACCAAGTNCAGTGCTGCGANAAGTGTTACCAACCANATTATCATGCTGCAATCGTTCTGGCGGANAAAAGTGANACCGTTAAATTTTCNGTGTTTATCCCCTTGATGANAAACAAAAATCCCTGTTGTTGCTGAATTAACCCCAGNTCTCCACNAATGAAAANACCTCCTGTTNGTGGCCGTTNAAGT] consensusID : consensus_15384#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 476 fasta sequence [CTGTTGTTGCTGAATTAACCCGCAGGCTNTCAACAAATGNGAACACTCTCACTGTTGGTGGCCTGTACAAGGTTGACCCCGAGACAGCTNTGAAGGCAAGGCTCAACAACACTGGAAAGCTTGCTGCTCTTCTCCAGCATGAGGTTAAACCCAAGTCGGTTTTGACAATCTCTGGTGAATTCGACACCAAGGCCTTGGACAGACCCCCCAAGTTTGGTCTAGCGCTTGCACTCAGGCCCTGATAACATCGTCTGTGGTTGATGGCTGTTAAATTTCGAATTCTTTGGTTGTTTTGCAAAGCAATGGCCAATAATTTGTTCCGCAGACCTGTTACTTCAATCTTTTAAAGTTTTGCTGCTCTGTGGGCAGGAGCCAATGGGTGTTTTACATGATTTTATCCGCTACTTCTGTTGATGAAAGCATCTAGTCATTGTTAGATGTATGCTGTTTTCCTCTCAAAAAAAAAAAAAAAAAAA] [+] EMBL C97870 [CTGTTGTTGCTGAATTAACCCGCAGGCTNTCAACAAATGNGAACACTCTCACTGTTGGTGGCCTGTACAAGGTTGACCCCGAGACAGCTNTGAAGGCAAGGCTCAACAACACTGGAAAGCTTGCTGCTCTTCTCCAGCATGAGGTTAAACCCAAGTCGGTTTTGACAATCTCTGGTGAATTCGACACCAAGGCCTTGGACAGACCCCCCAAGTTTGGTCTAGCGCTTGCACTCAGGCCCTGATAACATCGTCTGTGGTTGATGGCTGTTAAATTTCGAATTCTTTGGTTGTTTTGCAAAGCAATGGCCAATAATTTGTTCCGCAGACCTGTTACTTCAATCTTTTAAAGTTTTGCTGCTCTGTGGGCAGGAGCCAATGGGTGTTTTACATGATTTTATCCGCTACTTCTGTTGATGAAAGCATCTAGTCATTGTTAGATGTATGCTGTTTTCCTCTCAAAAAAAAAAAAAAAAAAA] [-] EMBL BI306258 [ CCTTGGACAGACCCCCCAAGTTTGGTCTAGCGCTTGCACTCAGGCCCTGATAACATCGTCTGTGGTTGATGGCTGTTAAATTTCGAATTCTTTGGTTGTTTTGCAAAGCAATGGCCAATAATTTGTTCCGCAGACCTGTTACTTCAATCTTTTAAAGTTTTGCTGCTCTGTGG ] consensusID : consensus_15384#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 282 fasta sequence [ACTCTCGTCGATGTCAAAGTGGACACAGAANCTAANANCTCTACTACTTTGACTGTGTTTGNTGTCCTTCCATCCANAAAACTTGTGACAANTGTCAANCTGCCTGACTACAANTCTGGAAAGGTGGAGATGCAANACTTCCATGAGAATGCAANTTTTGCCACTGCTGTTAAANTTCGAANTCTTTGGTTGTTTTGCAAANCAATGGCCAANAANTTGTTCCGCANACCTGTTACTTCAANCTTTTAAANTTTTGCTGCTCTGTGGGCAGGAGCCAAAAAA] [+] EMBL AU068701 [ACTCTCGTCGATGTCAAAGTGGACACAGAANCTAANANCTCTACTACTTTGACTGTGTTTGNTGTCCTTCCATCCANAAAACTTGTGACAANTGTCAANCTGCCTGACTACAANTCTGGAAAGGTGGAGATGCAANACTTCCATGAGAATGCAANTTTTGCCACTGCTGTTAAANTTCGAANTCTTTGGTTGTTTTGCAAANCAATGGCCAANAANTTGTTCCGCANACCTGTTACTTCAANCTTTTAAANTTTTGCTGCTCTGTGGGCAGGAGCCAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15384#0 TGGCGCCCCACCATTCCCTTCTACTAGTGGCGGAACCTCTCTGACCTCTCCTTTCTCTCT 60 consensus_15384#3 ------------------------------------------------------------ consensus_15384#1 ------------------------------------------------------------ consensus_15384#2 ------------------------------------------------------------ consensus_15384#4 ------------------------------------------------------------ consensus_15384#0 CCCTCCTCTTCGGCGGCCGCCTCCCCCCTCCCCCCCTTCCCCAAGCCGCCGCCGCCGCCA 120 consensus_15384#3 ------------------------------------------------------------ consensus_15384#1 ------------------------------------------------------------ consensus_15384#2 ------------------------------------------------------------ consensus_15384#4 ------------------------------------------------------------ consensus_15384#0 TGGCCATGAAGGGACCCGGCCTCTTCTCCGACATTGGCAAGAGGGCCAAGGATCTGCTCA 180 consensus_15384#3 ------------------------------------------------------------ consensus_15384#1 ------------------------------------------------------------ consensus_15384#2 ------------------------------------------------------------ consensus_15384#4 ------------------------------------------------------------ consensus_15384#0 CCAAGGACTACACCTATGACCAGAAGCTGACCGTCTCCACCGTCAGCTCCTCCGGAGTGG 240 consensus_15384#3 ------------------------------------------------------------ consensus_15384#1 ------------------------------------------------------------ consensus_15384#2 ------------------------------------------------------------ consensus_15384#4 ------------------------------------------------------------ consensus_15384#0 GCCTCACTTCCACAGCTGTGAAGAAAGGGGGGCTTTATACTCTTGATGTCAGCTCAGTTT 300 consensus_15384#3 ------------------------------------------------------------ consensus_15384#1 -------------------------------GCTTTATACTCTTGATGTCAGCTCAGTTT 29 consensus_15384#2 ------------------------------------------------------------ consensus_15384#4 ------------------------------------------------------------ consensus_15384#0 ACAAGTACAAGAGTACTCTCGTCGATGTCAAAGTGGACACAGAATCTAATATCTCTACTA 360 consensus_15384#3 ------------------------------------------------------------ consensus_15384#1 ACAAGTACAAGAGTACTCTCGTCGATGTCAAAGTGGACACAGAATCTAATATCTCTACTA 89 consensus_15384#2 ------------------------------------------------------------ consensus_15384#4 ------------------------------------------------------------ consensus_15384#0 CTTTGACTGTGTTTGATGTCCTTCCATCCACAAAGCTTGTGACAAGTGTCAAGCTGCCTG 420 consensus_15384#3 ------------------------------------------------------------ consensus_15384#1 CTTTGACTGTGTTTGATGTCCTTCCATCCACAAAGCTTGTGACAAGTGTCAAGCTGCCTG 149 consensus_15384#2 ------------------------------------------------------------ consensus_15384#4 ------------------------------------------------------------ consensus_15384#0 ACTACAATTCTGGAAAGGTGGAGATGCAATACTTCCATGAGAATGCAAGTTTTGCCACTG 480 consensus_15384#3 ------------------------------------------------------------ consensus_15384#1 ACTACAATTCTGGAAAGGTGGAGATGCAATACTTCCATGAGAATGCAAGTTTTGCCACTG 209 consensus_15384#2 ------------------------------------------------------------ consensus_15384#4 ------------------------------------------------------------ consensus_15384#0 CTGTTGGCATGAAGCCATCTCCTGTGGTTGAATTTTCTGGAACAGCTGGTGCTCAAGGAC 540 consensus_15384#3 ------------------------------------------------------------ consensus_15384#1 CTGTTGGCATGAAGCCATCTCCTGTGGTTGAATTTTCTGGAACAGCTGGTGCTCAAGGAC 269 consensus_15384#2 ------------------------------------------------------------ consensus_15384#4 ------------------------------------------------------------ consensus_15384#0 TTGCCTTTGGTGCAGAAGCTGGGTTTGACACTGCTACAGGAAAATTTACCAAGTACAGTG 600 consensus_15384#3 ------------------------------------------------------------ consensus_15384#1 TTGCCTTTGGTGCAGAAGCTGGGTTTGACACTGCTACAGGAAAATTTACCAAGTACAGTG 329 consensus_15384#2 --------------GCCTCCCCCCTCCCCCCCTTCCCCAAGCCGCCGCCGCCGCCGCCGC 46 consensus_15384#4 ------------------------------------------------------------ consensus_15384#0 CTGCGATAGGTGTAACCAAGCCAGATTATCATGCTGCAATCGTTCTGGCGGACAAAGGTG 660 consensus_15384#3 ------------------------------------------------------------ consensus_15384#1 CTGCGATAGGTGTAACCAAGCCAGATTATCATGCTGCAATCGTTCTGGCGGACAAAGGTG 389 consensus_15384#2 CATGGCCATGAAGGGACCCGGCCTCTTCTCCGACATTGGCAAGANGGCCAAGGATCTGCT 106 consensus_15384#4 ------------------------------------------------------------ consensus_15384#0 ACACCGTTAAAGTGTCAGGTGTATATCACCTTGATGATAAGCAGAAATCCTCTGTTGTTG 720 consensus_15384#3 ---------------------------------------------------CTGTTGTTG 9 consensus_15384#1 ACACCGTTAAAGTGTCAGGTGTATATCACCTTGATGATAAGCAGAAATCCTCTGTTGTTG 449 consensus_15384#2 CACCAAGGGACTACACCTATGACCAGAAGCTGACCGTCTCCACCGTCAGCTCCTCCGGAN 166 consensus_15384#4 ------------------------------------------------------------ consensus_15384#0 CTGAATTAACCCGCAGGCTCTCAACAAATGAGAACACTCTCACTGTT-GGTGGCCTGTAC 779 consensus_15384#3 CTGAATTAACCCGCAGGCTNTCAACAAATGNGAACACTCTCACTGTT-GGTGGCCTGTAC 68 consensus_15384#1 CTGAATTAACCCGCAGGCTCTCAACAAATGAGAACACTCTCACTGTTTGGTGGCCTGTAC 509 consensus_15384#2 TGGGCCTCACTTCCACAGCTGTNAAAAAAGGGGGGCTTTATACTCTT-GATGTCAGCTCA 225 consensus_15384#4 ------------------------------------------------------------ consensus_15384#0 AAGGTTGACCCCGAGACAGCTGTGAAGGCAAGGCTCAACAACACTGGAAAGCTTGCTGCT 839 consensus_15384#3 AAGGTTGACCCCGAGACAGCTNTGAAGGCAAGGCTCAACAACACTGGAAAGCTTGCTGCT 128 consensus_15384#1 AAGGTTGACCCCGAGACAGCTGTGAAGGCAAGGCTCAACAACACTGGAAAGCTTGCTGCT 569 consensus_15384#2 GTTTACAAGTNCAANANTACTCTC--GTCGATGTCAAAGTGGACACAGAATCTAATATCT 283 consensus_15384#4 ------------------ACTCTC--GTCGATGTCAAAGTGGACACAGAANCTAANANCT 40 ** * * * * * ** ** ** ** ** consensus_15384#0 CTTCT-CCAGCATGAGGTTAAACCCAAGTCGGTTTTGACAATCTCTGGTGAATTCGACAC 898 consensus_15384#3 CTTCT-CCAGCATGAGGTTAAACCCAAGTCGGTTTTGACAATCTCTGGTGAATTCGACAC 187 consensus_15384#1 CTTCT-C-AGCATGANGTTAA-CCAAGTTCGGTTTTGA-AATCTCTGGTGAATTCGACAC 625 consensus_15384#2 CTACTACTTTGACTGTGTTTGATGTCCTTCCATCCACAAAGCTTGTGACAAGTGTCNAGC 343 consensus_15384#4 CTACTACTTTGACTGTGTTTGNTGTCCTTCCATCCANAAAACTTGTGACAANTGTCAANC 100 ** ** * * *** ** * * * * ** * * * consensus_15384#0 CAAGGCCTTGGACAGACCCCCCAAGTTTGGTCTAGCGCTTGCACTCAGGCCCTGATAACA 958 consensus_15384#3 CAAGGCCTTGGACAGACCCCCCAAGTTTGGTCTAGCGCTTGCACTCAGGCCCTGATAACA 247 consensus_15384#1 -AAGGCCTTGGAAA---CCCCCAAATTTTGGCTAGCGCTTG-ACTCAG-CCCTGAAATCG 679 consensus_15384#2 ---TGCCTGACTACAATTCTGGAAAGGTGGANATGCNAT---ACTT---CCNTGAAAATG 394 consensus_15384#4 ---TGCCTGACTACAANTCTGGAAAGGTGGAGATGCAAN---ACTT---CCATGAGAATG 151 **** * ** * * ** *** ** *** * consensus_15384#0 TCGTCTGTGGTTGATGGCTGTTAAATT----TCGAATTCTTTGGTTG--TTTTGCAAAGC 1012 consensus_15384#3 TCGTCTGTGGTTGATGGCTGTTAAATT----TCGAATTCTTTGGTTG--TTTTGCAAAGC 301 consensus_15384#1 CTGG--GGGGTTGAGGGTTGT-AAATT----CCAATTTTTGGGGTTG--TTTTC--AAAC 728 consensus_15384#2 CAAGTTTTGCC--NCTGCTGTTGGCATGAAACCATCTCCTGTGGTTGAATTTTCTGGAAC 452 consensus_15384#4 CAANTTTTGCC--ACTGCTGTTAAANT----TCGAANTCTTTGGTTG--TTTTGCAAANC 203 * * *** * * * ***** **** * * consensus_15384#0 AA----TGGCCAATAATTTGTTCC----GCAGACCTGTTACTTCAATCTTTTA----AAG 1060 consensus_15384#3 AA----TGGCCAATAATTTGTTCC----GCAGACCTGTTACTTCAATCTTTTA----AAG 349 consensus_15384#1 CA----TGGCCAATATTTTTATC------CAAGACTGT-ACTTTAATTTTTAA----AAG 773 consensus_15384#2 ANCTGGTGCTCAANGANTTGCCTTTGGTGCAAAACTGG-GTTTGACACTGCTACAGGAAA 511 consensus_15384#4 AA----TGGCCAANAANTTGTTCC----GCANACCTGTTACTTCAANCTTTTA----AAN 251 ** *** ** ** *** ** * * * ** consensus_15384#0 TTTTGCT--GCTCTGTG----GGCAGGAGCCAATGGGTGTTTTACATGATTTTATCCGCT 1114 consensus_15384#3 TTTTGCT--GCTCTGTG----GGCAGGAGCCAATGGGTGTTTTACATGATTTTATCCGCT 403 consensus_15384#1 TTTGGC---GATCTG-G----GGCCGGAGC-ACCGGGCGACGC-CGTCGTGATAT----- 818 consensus_15384#2 ATTTACCAAGTNCAGTGCTGCGANAAGTGTTACCAACCANATTATCATGCTGCAATCGTT 571 consensus_15384#4 TTTTGCT--GCTCTGTG----GGCAGGAGCCAAAAAA----------------------- 282 ** * * * * * * * * * consensus_15384#0 ACTTCTGTTGATGAAAGCATCTAGTCATTGTTAGATGTATGCTGTTTTCCTCTCTTTCTT 1174 consensus_15384#3 ACTTCTGTTGATGAAAGCATCTAGTCATTGTTAGATGTATGCTGTTTTCCTCTCAAAAAA 463 consensus_15384#1 ------------------------------------------------------------ consensus_15384#2 -CTGGCGGANAAAAGTGANACCGTTAAATTTTCNGTGTTTATCCCCTTGATGANAAACAA 630 consensus_15384#4 ------------------------------------------------------------ consensus_15384#0 AGCTTAAAGCTCACTTTCTATGTACTACTGAGGTGCCATGCCACCAGTAGTCTATATTGA 1234 consensus_15384#3 AAAAAAAAAAAAA----------------------------------------------- 476 consensus_15384#1 ------------------------------------------------------------ consensus_15384#2 AAATCCCTGTTGTTGCTGAATTAACCCCAGNTCTCCACNAATGAAAANACCTCCTGTTNG 690 consensus_15384#4 ------------------------------------------------------------ consensus_15384#0 TATTCCTTGCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1291 consensus_15384#3 --------------------------------------------------------- consensus_15384#1 --------------------------------------------------------- consensus_15384#2 TGGCCGTTNAAGT-------------------------------------------- 703 consensus_15384#4 --------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||