These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15386#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 648 fasta sequence [TCTCACCCAACCCCAACTCTACACGCACGCGGCGACAGCGAGAGAGATGAGCACCGGCGGCGGCGCGGACAAGTCCGGCGGCGGCGGCGGAGGGGCGGTGAAGACGCCCTCGGACTTCCTCAAGTCGATCAGGGGACGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTCGACTACCGAGGTATTTTGGCTTGCCTGGATGGGTATATGAACATTGCAATGGAGCAAACGGAAGAGTATGTGAATGGCCAACTCAAGAACAAGTATGGTGATGCCTTCATAAGAGGCAACAATGTTCTATACATCAGCACTTCGAAGAGGACCCTTACGGATGACGCATAGATCGAGTGGAACAGAGTCGACTCTTTTTAACTTCAAAATCGTTAAGCTGATTGGTTGTGATCTCTCTCTGACCCATGCTCGTACCTGCTGTTTTGAGGTGGGAAAATGTATTGCATATTGCTAGACTTATCAGAAACTTCTTTAATGTAACTGTATCAGCTTTGCAAAGAACTTCCGGCCAAGATCTCCAGTTGCATTTTGACTGTTTTCTCCTGACTCCTGATTCGGCTTTCTGCATGGCTGGACCGCTGGATGCTGATATTGGCAGCCAGCGTTCCCCATGTGGATTGTGAATGGTGATCATCCAC] [+] EMBL AK063224 [TCTCACCCAACCCCAACTCTACACGCACGCGGCGACAGCGAGAGAGATGAGCACCGGCGGCGGCGCGGACAAGTCCGGCGGCGGCGGCGGAGGGGCGGTGAAGACGCCCTCGGACTTCCTCAAGTCGATCAGGGGACGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTCGACTACCGAGGTATTTTGGCTTGCCTGGATGGGTATATGAACATTGCAATGGAGCAAACGGAAGAGTATGTGAATGGCCAACTCAAGAACAAGTATGGTGATGCCTTCATAAGAGGCAACAATGTTCTATACATCAGCACTTCGAAGAGGACCCTTACGGATGACGCATAGATCGAGTGGAACAGAGTCGACTCTTTTTAACTTCAAAATCGTTAAGCTGATTGGTTGTGATCTCTCTCTGACCCATGCTCGTACCTGCTGTTTTGAGGTGGGAAAATGTATTGCATATTGCTAGACTTATCAGAAACTTCTTTAATGTAACTGTATCAGCTTTGCAAAGAACTTCCGGCCAAGATCTCC ] [+] EMBL C74244 [ CAACTCTACACGCACGCGGCGACA NGAGAGAGATGAGCACCGGCGGCGGCGCGGACAAGTCCGGCGGCGGCGGCGGAGGGGCGGTGAAGACGCCCTCGGACTTCCTCAAGTCGATCAGGGGACGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTCGACTACCGAGGTATTTTGGCTTGCCTGGATGGGTATATGAACATTGCAATGGAGCAAACGGAAGAGTATGTNAATGGCCAACTCAAGAACAAGTATGGTGATGCCTTCATAAGAGGCAACAATGTTCTATACATCAGCACTTCGAAGAGGACCCTTACGGATGACGCATAGATCGAGTTGGACAGAGTCGACTCTTTTTAACTTCAAAATCGTTAAGCTGATTGGTTGTGATCTCTCT ] [+] EMBL CA998458 [ CGAGAGAGATGAGCACCGGCGGCGGCGCGGACAAGTCCGGCGGCGGCGGCGGAGGGGCGGTGAAGACGCCCTCGGACTTCCTCAAGTCGATCAGGGGACGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTCGACTACCGAGGTATTTTGGCTTGCCTGGATGGGTATATGAACATTGCAATGGAGCAAACGGAAGAGTATGTGAATGGCCAACTCAAGAACAAGTATGGTGATGCCTTCATAAGAGGCAACAATGTTCTATACATCAGCACTTCGAAGAGGACCCTTACGGATGACGCATAGATCGAGTGGAACAGAGTCGACTCTTTTTAACTTCAAAATCGTTAAGCTGATTGGTTGTGATCTCTCTCTGACCCATGCTCGTACCTGCTGTTTTGAGGTGGGAAAATGTATTGCATATTGCTAGACTTATCAGAAACTTCTTTAATGTAACTGTATCAGCTTTGCAAAGAACTTCCGGCCAAGATCTCCAGTTGCATTTTGACTGTTTTCTCCTGACTCCTGATTCGGCTTTCTGCATGGCTGGACCGCTGGATGCTGATATTGGCAGCCAGCGTTCCCCATGTGGATTGTGAATGGTGATCATCCAC] consensusID : consensus_15386#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 637 fasta sequence [CACCCGCACCCGCACCCGCACAAACGCAGCGCAAGATGAGCAGTGGCGGCGAGAAGTCCGGCTCGGGCGGCGGCGGCGGTGGCGGCGGCGGCGGGGCGGTGAAGACGCCCTCCGACTTCCTNAAGTCCAT-CA-GGGGGCGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTCGACTACCGCGGTATTTTGGCTTGTCTTGATGGTTACATGAACATTGCAATGGAGCAAACGGAAG-AATAT-GTCAATGGTCAG-CTGAAGAACAAGTACGGTGACGCTTTCATACGAGGAAACAATGTTTTATACATCAGCACATCAAAGCGTACCCTCACTGATGGTGCATGAGAAGGTGAGACAGCATGCAGTTCAATGCCTGCCACTATCGCAACTTTGATTTCCTCTGTGATCAATCTCTAAAGAAATACTGCCTTACAATATCGTAGTTGCTACATGGAAAGAGATGTTTTCTGGAATGGAGGATTATCACCAGATATTTGTACCC---AAAAAAAC-TATGTTCGATTTTAGTAGATTCTACATATTGTGGTCTGCTGCACTATTGATGTATGTGGTGATTATTGGACCGTCAGGGATATGGATAAGATTTATATATTGAAGTGTCCTCATTCTTTGTGAACCCAAAA] [+] EMBL AK058487 [CACCCGCACCCGCACCCGCACAAACGCAGCGCAAGATGAGCAGTGGCGGCGAGAAGTCCGGCTCGGGCGGCGGCGGCGGTGGCGGCGGCGGCGGGGCGGTGAAGACGCCCTCCGACTTCCTCAAGTCCAT CA GGGGGCGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTCGACTACCGCGGTATTTTGGCTTGTCTTGATGGTTACATGAACATTGCAATGGAGCAAACGGAAG AATAT GTCAATGGTCAG CTGAAGAACAAGTACGGTGACGCTTTCATACGAGGAAACAATGTTTTATACATCAGCACATCAAAGCGTACCCTCACTGATGGTGCATGAGAAGGTGAGACAGCATGCAGTTCAATGCCTGCCACTATCGCAACTTTGATTTCCTCTGTGATCAATCTCTAAAGAAATACTGCCTTACAATATCGTAGTTGCTACATGGAAAGAGATGTTTTCTGGAATGGAGGATTATCACCAGATATTTGTACCC AAAAAAAC TATGTTCGATTTTAGTAGATTCTACATATTGTGGTCTGCTGCACTATTGATGTATGTGGTGATTATTGGACCGTCAGGGATATGGATAAGATTTATATCTTG ] [+] EMBL AU029328 [ GGCCGTTGAAGACGCCCTCCGACTTCCTNAAGCCCAT CA GGGGGCGCCCCNTCGTCGTCAAGCTCAACTCCGGCGTCGACTACCGCGGTATTTTGGCTTGTCTTGATGGTTACATGAACATTGCAATGGAGCAAACGGAAG AATAT GTCAATGGTCAG CTGAAGAACAAGTACGGTGACGCTTTCATACGAGGAAACAATGTTTTATACATCAGCACATCAAAGCGTACCCTCACTGATGGTGCATGAGAAGGTGAGACAGCATGCAGTTCAATGCCTGCCACTATCGCAACTTTGATTTCCTCTGTGATCAATCTCTAAAGAAATACTGCCTTACAATATCGTAGTTGCTACATGGAAAGAGATGTTTTCTGGAATGGAGGATTATCACCAGATATTTGTACCC AAAAAAAC TATGTTCGATTTTAGTAGATTCTACATATTGTGGTCTGCTGCACTATTGATGTATGTGGTGATTATTGGACCGTCAGGGATATGGATAAGATTTATAaaaaaaa ] [+] EMBL BI795415 [ gAAGTCCATCCAGGGGGGCGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTCGACTACC C GTATTTTGGCTTGTCTTGATGGTTACATGAACATTGCAATGGAGCAAACGGAAGAAATATGGTCAATGGTCAG CTGAAGAACAAGTACGGTGACGCTTTCATACGAGGAAAC ATGTTTTATACATCAGCACATCAAAGCGTACCCTCACTGATGGCGCATGAGAGGGTGAGACAGCATGCAGTTCAATGCCTGCCACTATCGCAACTTTGATATCCTGTGCGGTC ATCT TAAAGAAATACTGTCTTACAATCTCGTAGTTGCTACATGGAAAGAGATGTTTTCTGGAATGGAGGATTATCACCAGATATTTGTACCCCA AAAAAAACTTATGTTCGATTTTAGTAGATTCTACAGATTGTGGTCTGCTGCACTCTTGATGTATGTGGTGATTATTGTACCGTCAGGGATATGGATAAGATTTATATATTGGGGTGTCCTCATTCTTTGTGAACCCAAAA] [+] EMBL BI798990 [ TGGTCAGCCTGAAGAACAAGTACGGTGACGCTTTCATACGAGGAAACAATGTTTTATACATCAGCACATC AAGCGTACCCTCACTGATGGCGCATGAGAGGGTGAGACAGCATGCAGTTCAATGCCTGCCACTATCGCAACTTTGATATCCTGTGCGGTC ATCTCTAAAGAAATACTGTCTTACAATCTCGTAGTTGCTACATGGAAAGAGATGTTTTCTGGAATGGAGGATTATCACCAGATATTTGTACCCCCAAAAAAAACTTATGTTCGATTTTAGTAGATTCTACAGATTGTGGTCTGCTGCACTCTTGATGTATGTGGTGATTATTGTACCGTCAGGGATATGGATAAGATTTATATAaaaaaa ] consensusID : consensus_15386#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 573 fasta sequence [CCGGCTCGGGCGGCGGCGGCGGTGGCGGCGGCGGCGGGGCGGTGAAGACGCCCTCCGACTTCCTCAAGTCCATCAGGGGGCGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTCGACTACCGCGGTATTTTGGCTTGTCTTGATGGTTACATGAACATTGCAATGGAGCAAACGGAAGAAT-ATGTCAATGGTCAGCTGAAGAACAA-GTACGG-TG-ACGC-TTTCATACGAGGAAACAATGTTTTATACATCAGCACATCAAAGCGTACCCTCACTGATGGTGCATGAGAAGGTGAGACAGCATGCAGTTCAATGCCTGCCACTATCGCAACTTTGATTTCCTCTGTGATCAATCTCTAAAGAAATACTGCCTTACAATATCGTAGTTGCTACATGGAAAGAGATGTTTTCTGGAATGGAGGATTATCACCAGATATTTGTACCC---AAAAAAAC-TATGTTCGATTTTAGTAGATTCTACATATTGTGGTCTGCTGCACTATT-GATGTATGTGGT-GATTATTGGACCGTCAGGGATAT-GGATAAGATTTATATCTTGGGGTGTCCTCAAAAAAAAAAAA] [+] EMBL CA755411 [CCGGCTCGGGCGGCGGCGGCGGTGGCGGCGGCGGCGGGGCGGTGAAGACGCCCTCCGACTTCCTCAAGTCCATCAGGGGGCGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTCGACTACCGCGGTATTTTGGCTTGTCTTGATGGTTACATGAACATTGCAATGGAGCAAACGGAAGAAT ATGTCAATGGTCAGCTGAAGAACAA GTACGG TG ACGC TTTCATACGAGGAAACAATGTTTTATACATCAGCACATCAAAGCGTACCCTCACTGATGGTGCATGAGAAGGTGAGACAGCATGCAGTTCAATGCCTGCCACTATCGCAACTTTGATTTCCTCTGTGATCAATCTCTAAAGAAATACTGCCTTACAATATCGTAGTTGCTACATGGAAAGAGATGTTTTCTGGAATGGAGGATTATCACCAGATATTTGTACCC AAAAAAAC TATGTTCGATTTTAGTAGATTCTACATATTGTGGTCTGCTGCACTATT GATGTATGTGGT GATTATTGGACCGTCAGGGATAT GGATAAGATTTATATCTTGGGGTGTCCTCAAAAAAAAAAAA] [-] EMBL CB965750 [ agtcCGGCTCGGGCGNCGNCGTCGCCGGGCCGGTGAAGACACCGTCCGACTTCCTTAAGTCCATCAGGGGGCGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTCGACTACCGCGGTATTTTGGCTTGTCTTGATGGTTACATGAACATTGCAATGGAGCAAACGGAAGAAT ATGTCAATGGTCAGCTGAAGAACAA GTACGG TG ACGC TTTCATACGAGGAAACAATGTTTTATACATCAGCACATCAAAGCGTACCCTCACTGATGGCGCATGAGAGGGTGAGACAGCATGCAGTTCAATGCCTGCCACTATCGCAACTTTGATGTCCTGTGCGGTCAATCTCTAAAGAAATACTGTCTTACAATCTCGTAGTTGCTACATGGAAAGAGATGTTTTCTGGAATGGAGGATTATCACCAGATATTTGTACCCCA AAAAAAACTTATGTTCGATTTTAGTAGATTCTACAGATTGTGGTCTGCTGCACTCTT GATGTATGTGGT GATTATTGGACCGTCAGGGATAT GGATAAGATTTATATCTTGG ] [-] EMBL BE229328 [ GAATTCTTCAAGTCCATCAGGGGGCGCCCCGTTGTNGTCAAGTTCAATTCCGGCGTNGACTACCNCGGTATTNTGGCTTGTCTGGATGGTNACATGAACATTGCAATGGAGCAAACGGAAGAATAATGTCAATGGTCAGCTGAAGAACAA GTACGG TG ACGC TTTCATACGAGGAAACAATGTTTTATACATCAGCACATCAAAGCGTACCCTCACTGATGGTGCATGAGAAGGTGAGACAGCATGCAGTTCAATGCCTGCCACTATCGCAACTTTGATTTCCTCTGTGATCAATCTCTAAAGAAATACTGCCTNACAATATCGTAGTTGCTACATGGAAAGAGATGTTTTCTGGAATGGAGGATTATCACCAGATATTTGTACCC AAAAAAAC TATGTTCGATTTTAGTAGATTCTACATATTGTGGTCTGCTGCACTATT GATGTATGTGGT GATTATTGGACC ] [-] EMBL BE229324 [ TCATCAAGTCCATCAGGGGGCG CCCGTTGTCGTCAAGNTCAANTCCGGGGTCGACTACCGCGGTATTTTGGCTTGTCTTGATGGTTACATGAACATTGCAATGGAGCAAACGGAAGAAT ATGTCAATGNTCAGCTGAAGAACAA GTACGG TG ACGC TTTCATACGAGGAAACAATGTTTTATACATCAGCACATCAAAGCGTACCCTCACTGATGGTGCATGAGAAGGTGAGACAGCATGCAGTTCAATGCCTGCCACTATCGCAACTTTGATTTCCTCTGTGATCAATCTCTAAAGAAATACTGCCTTACAATATCGTAGTTGCTACATGGAAAGAGATGTTTTNTGGAATGGAGGATTATCACCAGATATTTGTACCC AAAAAAAC TATGTTCGATTTTAGTAGATTCTACATATTGTGGTCTGCTGCACTATT GATGTATGTGGT GATTATTGGACC ] [+] EMBL AU057854 [ CTTGTCTTGATGGTTACATGAACATTGCAATGGAGCAAACGGAAGAAT ATGTCAATGGTCAGCTGAAGAACAA GTACGG TG ACGC TTTCATACGAGGAAACAATGTTTTATACATCAGCACATCAAAGCGTACCCTCACTGATGGTGCATGAGAAGGTGAGACAGCATGCAGTTCAATGCCTGCCACTATCGCAACTTTGATTTCCTCTGTGATCAATCTCTAAAGAAATACTGCCTTACAATATCGTAGTTGCTACATGGAAAGAGATGTTTTCTGGAATGGAGGATTATCACCAGATATTTGTACCC AAAAAAAC TATGTTCGATTTTAGTAGATTCTACATATTGTGGTCTGCTGCACTATTGGATGTATGTGGTGGATTATTGGACCGTCA GGATATGGGATAAGATTTA ] [+] EMBL CB669872 [ AGAACAAGGTACGGCTGTACGCATTTCATACGAGGAAACAATGTTTTATACATCAGCACATCGAAGCGTACCCTCACTGATGGTGCATGAGAAGGTGAGACAGCATGCAGATCAATGCCTGCCACTATCGCAACTTTGATTTCCTCTGTGATCAATCTCTAAAGAAATACTGCCTTACAATATCGTAGTTGCTACATGGAAAGAGATGTTTTCTGGAATGGAGGATTATCACCAGATATTTGTACCC AAAAAAAC TATGTTCGATTTTAATAGATTCTACATATTGTGGTCTGCTGCACTATT GATGTATGTGGT GATTATTGGACCGTCAGGGATAT GGA ] [+] EMBL CA766958 [ GATTATCACCAGATATTTGTACCCCAAAAAAAAACTTATGTTCGATTTTAGTAGATTCTACAGATTGTGGTCTGCTGCACTCTT GATGTATGTGGT GATTATTGGACCGTCAGGGATAT GGATAAGATTTATATC ] consensusID : consensus_15386#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 569 fasta sequence [CGAGGAGAAGTCCGNNHTCGGGCGGCGGCGGCGGTGGCGGCGGCGGCGGGGCGGTGAAGACGCCCTCCGACTTCCTCAAGTCCATCAGGGGGCGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTCGACTACCGCGGTATTTTGGCTTGTCTTGATGGTTACATGAACATTGCAATGGAGCAAACGGAAGAATATGTCAATGGTCAGCTGAAGAACAAGTACGGTGACGCTTTCATACGAGGAAACAWTGTTTTATACATCAGCACATCAAAGCGTACCCTCACTGATGGTGCATGAGAAGGTGAGACAGCATGCAGTTCAATGCCTGCCACTATCGCAACTTTGATTTCCTCTGTGATCAATCTCTAAAGAAATACTGCCTTACAATATCGTAGTTGCTACATGGAAAGAGATGTTTTCTGGAATGGAGGATTATCACCAGATATTTGTACCCAAAAAAACTATGTTCGATTTTAGTAGATTCTACATATTGTGGTCTGCTGCACTATTGATGTATGTBGTGATTATTGGACCGTCA-GGATATGGATAAGATTTATA---AAAAAAAAAAAA] [+] EMBL BE229361 [CGAGGAGAAGTCCGNNHTCGGGCGGCGGCGGCGGTGGCGGCGGCGGCGGGGCGGTGAAGACGCCCTCCGACTTCCTCAAGTCCATCAGGGGGCGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTCGACTACCGCGGTATTTTGGCTTGTCTTGATGGTTACATGAACATTGCAATGGAGCAAACGGAAGAATATGTCAATGGTCAGCTGAAGAACAAGTACGGTGACGCTTTCATACGAGGAAACAWTGTTTTATACATCAGCACATCAAAGCGTACCCTCACTGATGGTGCATGAGAAGGTGAGACAGCATGCAGTTCAATGCCTGCCACTATCGCAACTTTGATTTCCTCTGTGATCAATCTCTAAAGAAATACTGCCTTACAATATCGTAGTTGCTACATGGAAAGAGATGTTTTCTGGAATGGAGGATTATCACCAGATATTTGTACCCAAAAAAACTATGTTCGATTTTAGTAGATTCTACATATTGTGGTCTGCTGCACTATTGATGTATGTBGTGATTATTGGACCGTCA GGATATGGATAAGATTTATA AAAAAAAAAA ] [+] EMBL AT003460 [ GGCGCCGGTGGCGGCGNCGGC GGGCGGTGAANACGCCCTCCGACTTCCTCAAGTCCATCAGGGGGCGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTCGACTACCGCGGTATTTTGGCTTGTCTTGATGGTTACATGAACATTGCAATGGAGCAAACGGAAGAATATGTCAATGGTCAGCTGAAGAACAAGTACGGTGACGCTTTCATACGAGGAAACAATGTTTTATACATCAGCACATCAAAGCGTACCCTCACTGATGGTGCATGAGAAGGTGAGACAGCATGCAGTTCAATGCCTGCCACTATCGCAACTTTGATTTCCTCTGTGATCAATCTCTAAAGAAATACTGCCTTACAATATCGTAGTTGCTACATGGAAAGAGATGTTTTCTGGAATGGAGGATTATCACCAGATATTTGTACCCAAAAAAACTATGTTCGATTTTAGTAGATTCTACATATTGTGGTCTGCTGCACTATTGATGTATGTGGTGATTATTGGACCGTCAGGGATATGGATAAGATTTATATCTAAAAAAAAAAAA] [-] EMBL CA882799 [ ATGGTGCATGAGAAGGTGAGACAGCATGCAGTTCAATGCCTGCCACTATCGCAACTTTGATTTCCTCTGTGATCAATCTCTAAAGAAATACTGCCTTACAATATCGTAGTTGCTACATGGAAAGAGATGTTTTCTGGAATGGAGGATTATCACCA ] consensusID : consensus_15386#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 522 fasta sequence [AACTCTACACGCACGCGGCGACAGCGAGAGAGATGAGCACCGGCGGCGGCGCGGACAAGTCCGGCGGCGGCGGCGGAGGGGCGGTGAAGACGCCCTCGGACTTCCTCAAGTCGATCAGGGGACGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTCGACTACCGAGGTATTTTGGCTTGCCTGGATGGGTATATGAACATTGCAATGGAGCAAACGGAAGAGTATGTGAATGGCCAACTCAAGAACAAGTATGGTGATGCCTTCATAAGAGGCAACAATGTTCTATACATCAGCACTTCGAAGAGGACCCTTACGGATGACGCATAGATCGAGTGGAACAGAGTCGACTCTTTTTAACTTCAAAATCGTTAAGCTGATTGGTTGTGATCTCTCTCTGACCCATGCTCGTACCTGCTGTTTTGAGGTGGGAAAATGTATTGCATATTGCTAGACTTATCAGAAACTTCTTTAATGTAACTGTATCAGCTTTGCAAAGAACTTCCGGCCAAAAAAAAAAAAAAAA] [+] EMBL AU162263 [AACTCTACACGCACGCGGCGACAGCGAGAGAGATGAGCACCGGCGGCGGCGCGGACAAGTCCGGCGGCGGCGGCGGAGGGGCGGTGAAGACGCCCTCGGACTTCCTCAAGTCGATCAGGGGACGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTCGACTACCGAGGTATTTTGGCTTGCCTGGATGGGTATATGAACATTGCAATGGAGCAAACGGAAGAGTATGTGAATGGCCAACTCAAGAACAAGTATGGTGATGCCTTCATAAGAGGCAACAATGTTCTATACATCAGCACTTCGAAGAGGACCCTTACGGATGACGCATAGATCGAGTGGAACAGAGTCGACTCTTTTTAACTTCAAAATCGTTAAGCTGATTGGTTGTGATCTCTCTCTGACCCATGCTCGTACCTGCTGTTTTGAGGTGGGAAAATGTATTGCATATTGCTAGACTTATCAGAAACTTCTTTAATGTAACTGTATCAGCTTTGCAAAGAACTTCCGGCCAAAAAAAAAAAAAAAA] consensusID : consensus_15386#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 500 fasta sequence [CCCGCACAAACGCAGCGCAAGATGNGCAGTGGCGNCGAGAAGTCCGGCTCGGGCGGCGGCGGCGGTGGCGGCGGCGGCGGGGCGGTGAAGACGCCCTCCGACTTCCTCAAGTCCATCAGGGGGCGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTCGACTACCGCGGTATTTTGGCTTGTCTTGATGGTTACATGAACATTGCAATGGAGCAAACGGAAGAATATGTCAATGGTCAGCTGAAGAACAAGTACGGTGACGCTTTCATACGAGGAAACAATGTTTTATACATCAGCACATCAAAGCGTACCCTCACTGATGGTGCATGAGAAGTTGCTACATGGAAAGAGATG-TTTTCT-GGAAT-GGAGGATTATCACCAGATA-TTTGTA-CCCAAAAAAACTAT-GTTCGA-TTTTAGTAGATTCTACATATTGTGGTCTGCTGCACTATTGATGTATGTGGTGATTATTGGACCGTCAGGGATATGGATAAGATTTATAAAAAG] [+] EMBL AU165304 [CCCGCACAAACGCAGCGCAAGATGNGCAGTGGCGNCGAGAAGTCCGGCTCGGGCGGCGGCGGCGNTGNCGGCGGCGGCGGGGCGGTGAAGACGCCCTCCGACTTCTTCAAGTCCATCAGGGGGCGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTCGACTACCGCGGTATTTTGGCTTGTCTTGATGGTTACATGAACATTGCAATGGAGCAAACGGAAGAATATGTCAATGGTCAGCTGAAGAACAAGTACGGTGACGCTTTCATACGAGGAAACAATGTTTTATACATCAGCACATCAAAGCGTACCCTCACTGATGGTGCATGAGAAGTTGCTACATGGAAAGAGATG TTTTCT GGAAT GGAGGATTATCACCAGATA TTTGTA CCCAAAAAAACTAT GTTCGA TTTTAGTAGATTCTACATATTGTGGTCTGCTGCACTATTGATGTATGTGGTGATTATTGGACCGTCAGGGATATGGATAAGATTTATAAAAA ] [+] EMBL AU165303 [ ACAAACGCAGCGCAAGATGAGCAGTGGCGGCGAGAAGTCCGGCTCGGGCGGCGGCGGCGGTGGCGGCGGCGGCGGGGCGGTGAAGACGCCCTCCGACTTCCTCAAGTCCATCAGGGGGCGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTCGACTACCGCGGTATTTTGGCTTGTCTTGATGGTTACATGAACATTGCAATGGAGCAAACGGAAGAATATGTCAATGGTCAGCTGAAGAACAAGTACGGTGACGCTTTCATACGAGGAAACAATGTTTTATACATCAGCACATCAAAGCGTACCCTCACTTATGGTGCATNAGAAGTTGCTACATGGAAAGAGATGTTTTTCTGGGAATGGGAGGATTATCACCAGATATTTTGTANCCCAAAAAAACTATNGTTCGATTTTTAGTAGgntt ] [+] EMBL AK122107 [ GGCTCGGGCGGCGGCGGCGGTGGCGGCGGCGGCGGGGCGGTGAAGACGCCCTCCGACTTCCTCAAGTCCATCAGGGGGCGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTCGACTACCGCGGTATTTTGGCTTGTCTTGATGGTTACATGAACATTGCAATGGAGCAAACGGAAGAATATGTCAATGGTCAGCTGAAGAACAAGTACGGTGACGCTTTCATACGAGGAAACAATGTTTTATACATCAGCACATCAAAGCGTACCCTCACTGATGGTGCATGAGAAGTTGCTACATGGAAAGAGATG TTTTCT GGAAT GGAGGATTATCACCAGATA TTTGTA CCCAAAAAAACTAT GTTCGA TTTTAGTAGATTCTACATATTGTGGTCTGCTGCACTATTGATGTATGTGGTGATTATTGGACCGTCAGGGATATGGATAAGATTTATAtcttg] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15386#2 ----------------------------------------------------------CC 2 consensus_15386#3 ----------------------------------------------CGAGGAGAAGTCCG 14 consensus_15386#1 CACCCGCACCCGCACCCGCACAAACGCAGCGCAAGATGAGCAGTGGCGGCGAGAAGTCC- 59 consensus_15386#5 --------------CCCGCACAAACGCAGCGCAAGATGNGCAGTGGCGNCGAGAAGTCC- 45 consensus_15386#0 -----------TCTCACCCAACCCCAACTCTACACGCACGCGGCGACAGCGAGAGAGATG 49 consensus_15386#4 -------------------------AACTCTACACGCACGCGGCGACAGCGAGAGAGATG 35 consensus_15386#2 GGCTCGGGCGGCGGCGG---------CGGTGGCGGCGGCGGCGGGGCGGTGAAGACGCCC 53 consensus_15386#3 NNHTCGGGCGGCGGCGG---------CGGTGGCGGCGGCGGCGGGGCGGTGAAGACGCCC 65 consensus_15386#1 GGCTCGGGCGGCGGCGG---------CGGTGGCGGCGGCGGCGGGGCGGTGAAGACGCCC 110 consensus_15386#5 GGCTCGGGCGGCGGCGG---------CGGTGGCGGCGGCGGCGGGGCGGTGAAGACGCCC 96 consensus_15386#0 AGCACCGGCGGCGGCGCGGACAAGTCCGGCGGCGGCGGCGGAGGGGCGGTGAAGACGCCC 109 consensus_15386#4 AGCACCGGCGGCGGCGCGGACAAGTCCGGCGGCGGCGGCGGAGGGGCGGTGAAGACGCCC 95 * ********** *** *********** ****************** consensus_15386#2 TCCGACTTCCTCAAGTCCATCAGGGGGCGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTC 113 consensus_15386#3 TCCGACTTCCTCAAGTCCATCAGGGGGCGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTC 125 consensus_15386#1 TCCGACTTCCTNAAGTCCATCAGGGGGCGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTC 170 consensus_15386#5 TCCGACTTCCTCAAGTCCATCAGGGGGCGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTC 156 consensus_15386#0 TCGGACTTCCTCAAGTCGATCAGGGGACGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTC 169 consensus_15386#4 TCGGACTTCCTCAAGTCGATCAGGGGACGCCCCGTCGTCGTCAAGCTCAACTCCGGCGTC 155 ** ******** ***** ******** ********************************* consensus_15386#2 GACTACCGCGGTATTTTGGCTTGTCTTGATGGTTACATGAACATTGCAATGGAGCAAACG 173 consensus_15386#3 GACTACCGCGGTATTTTGGCTTGTCTTGATGGTTACATGAACATTGCAATGGAGCAAACG 185 consensus_15386#1 GACTACCGCGGTATTTTGGCTTGTCTTGATGGTTACATGAACATTGCAATGGAGCAAACG 230 consensus_15386#5 GACTACCGCGGTATTTTGGCTTGTCTTGATGGTTACATGAACATTGCAATGGAGCAAACG 216 consensus_15386#0 GACTACCGAGGTATTTTGGCTTGCCTGGATGGGTATATGAACATTGCAATGGAGCAAACG 229 consensus_15386#4 GACTACCGAGGTATTTTGGCTTGCCTGGATGGGTATATGAACATTGCAATGGAGCAAACG 215 ******** ************** ** ***** ** ************************ consensus_15386#2 GAAGAATATGTCAATGGTCAGCTGAAGAACAAGTACGGTGACGCTTTCATACGAGGAAAC 233 consensus_15386#3 GAAGAATATGTCAATGGTCAGCTGAAGAACAAGTACGGTGACGCTTTCATACGAGGAAAC 245 consensus_15386#1 GAAGAATATGTCAATGGTCAGCTGAAGAACAAGTACGGTGACGCTTTCATACGAGGAAAC 290 consensus_15386#5 GAAGAATATGTCAATGGTCAGCTGAAGAACAAGTACGGTGACGCTTTCATACGAGGAAAC 276 consensus_15386#0 GAAGAGTATGTGAATGGCCAACTCAAGAACAAGTATGGTGATGCCTTCATAAGAGGCAAC 289 consensus_15386#4 GAAGAGTATGTGAATGGCCAACTCAAGAACAAGTATGGTGATGCCTTCATAAGAGGCAAC 275 ***** ***** ***** ** ** *********** ***** ** ****** **** *** consensus_15386#2 AATGTTTTATACATCAGCACATCAAAGCGTACCCTCACTGATGGTGCAT-GAGAAGGTGA 292 consensus_15386#3 AWTGTTTTATACATCAGCACATCAAAGCGTACCCTCACTGATGGTGCAT-GAGAAGGTGA 304 consensus_15386#1 AATGTTTTATACATCAGCACATCAAAGCGTACCCTCACTGATGGTGCAT-GAGAAGGTGA 349 consensus_15386#5 AATGTTTTATACATCAGCACATCAAAGCGTACCCTCACTGATGGTGCAT-GAGAAG---- 331 consensus_15386#0 AATGTTCTATACATCAGCACTTCGAAGAGGACCCTTACGGATGACGCATAGATCGAGTGG 349 consensus_15386#4 AATGTTCTATACATCAGCACTTCGAAGAGGACCCTTACGGATGACGCATAGATCGAGTGG 335 * **** ************* ** *** * ***** ** **** **** ** consensus_15386#2 GACAGCATGCAGTTCAATGCCTGCCACTATCGCAACTTTGATTTCCTCTGTGATCAATCT 352 consensus_15386#3 GACAGCATGCAGTTCAATGCCTGCCACTATCGCAACTTTGATTTCCTCTGTGATCAATCT 364 consensus_15386#1 GACAGCATGCAGTTCAATGCCTGCCACTATCGCAACTTTGATTTCCTCTGTGATCAATCT 409 consensus_15386#5 ------------------------------------------------------------ consensus_15386#0 AACAGAGTCGACTCTTTTTAACTTCAAAATCGTTAAGCTGATTGGT--TGTGATCTCTCT 407 consensus_15386#4 AACAGAGTCGACTCTTTTTAACTTCAAAATCGTTAAGCTGATTGGT--TGTGATCTCTCT 393 consensus_15386#2 CTAAAGAAATACTGCCTTACAATATCGTAGTTGCTACATGGAAAGAGATGTTTTCTGGAA 412 consensus_15386#3 CTAAAGAAATACTGCCTTACAATATCGTAGTTGCTACATGGAAAGAGATGTTTTCTGGAA 424 consensus_15386#1 CTAAAGAAATACTGCCTTACAATATCGTAGTTGCTACATGGAAAGAGATGTTTTCTGGAA 469 consensus_15386#5 ------------------------------TTGCTACATGGAAAGAGATGTTTTCTGGAA 361 consensus_15386#0 CT---GACCCATGCTCGTAC----CTGCTGTTTTGAGGTGGGAAAA--TGTATTGCATAT 458 consensus_15386#4 CT---GACCCATGCTCGTAC----CTGCTGTTTTGAGGTGGGAAAA--TGTATTGCATAT 444 ** * *** ** * *** ** * consensus_15386#2 TGGAGGATTATCACCAGATATTTGTACCCAAAAAAACTATGTTCGATTTTAGTAGA--TT 470 consensus_15386#3 TGGAGGATTATCACCAGATATTTGTACCCAAAAAAACTATGTTCGATTTTAGTAGA--TT 482 consensus_15386#1 TGGAGGATTATCACCAGATATTTGTACCCAAAAAAACTATGTTCGATTTTAGTAGA--TT 527 consensus_15386#5 TGGAGGATTATCACCAGATATTTGTACCCAAAAAAACTATGTTCGATTTTAGTAGA--TT 419 consensus_15386#0 TGCTAGAC--TTATCAGAAACTTCT--TTAATGTAACTGTATCAGCTTTGCAAAGAACTT 514 consensus_15386#4 TGCTAGAC--TTATCAGAAACTTCT--TTAATGTAACTGTATCAGCTTTGCAAAGAACTT 500 ** ** * * **** * ** * ** **** * * * *** *** ** consensus_15386#2 CTACATATTGTGGTCTGCTGCACTATTGATGTATG-TGGTGATTATTGGACCGTCAGGGA 529 consensus_15386#3 CTACATATTGTGGTCTGCTGCACTATTGATGTATG-TBGTGATTATTGGACCGTCAGG-A 540 consensus_15386#1 CTACATATTGTGGTCTGCTGCACTATTGATGTATG-TGGTGATTATTGGACCGTCAGGGA 586 consensus_15386#5 CTACATATTGTGGTCTGCTGCACTATTGATGTATG-TGGTGATTATTGGACCGTCAGGGA 478 consensus_15386#0 CCGGCCAAGATCTCCAGTTGCATTTTGACTGTTTTCTCCTGACTCCTGATTCGGCTTTCT 574 consensus_15386#4 CCGGCCAAAAAAAAAAAAAAAA-------------------------------------- 522 * * * consensus_15386#2 TATGGATAAGATTTATATCTTGGGGTGTCCTCAAAAAAAAAAAA---------------- 573 consensus_15386#3 TATGGATAAGATTTATA---------------AAAAAAAAAAAA---------------- 569 consensus_15386#1 TATGGATAAGATTTATATATTGAAGTGTCCTCATTCTTTGTGAACCCAAAA--------- 637 consensus_15386#5 TATGGATAAGATTTATAAAAAG-------------------------------------- 500 consensus_15386#0 GCATGGCTGGACCGCTGGATGCTGATATTGGCAGCCAGCGTTCCCCATGTGGATTGTGAA 634 consensus_15386#4 ------------------------------------------------------------ consensus_15386#2 -------------- consensus_15386#3 -------------- consensus_15386#1 -------------- consensus_15386#5 -------------- consensus_15386#0 TGGTGATCATCCAC 648 consensus_15386#4 -------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||