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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15397#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 867 fasta sequence
[TATTTTTAGGGCCCGGAATTTCCCCTTTTTTTGGTAAGGGAAAACAAGGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCCACCATTATTTATGTAGTTTCAACTGAACATTCACACAAGTTCGAAAAAGACATCTGGAATTTACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTACAGAGTAGCTCCTACTAATTCACATCAGTAAAATAAACACACCCCAGGGGCATGCTGTTATTCATTTCTCGACTCCTTTCCCACTGTACAGAAAAAAAAAAAACTTTAAAAGAGTACTTAGCTACTAGTATCTGCAAATCAACATATCAGAAGCATTCAAACAGAACACCAAGCACCGGATCGTGTGATTGATCATCAGTTTCACTGTCACCCAGCGGATCAGGTTGGGCGAGCCTCCCCGCCCTTCTGCACTCAGCCGCCAAAAAAACAGAGGCAGACCATGCTGATCAGTTCATCATTCATAACCCAGAAATTAACCAAATAAGTTGGAGGAGATCGAGACGGCTAATTTGGTTGGTTTTCAATTTTACCTTATCCCCTTTGGCGGCGGCAGCCCTCTTCGCTGCATCGGCCTTGTCCTTGTCCGCCTTCCTCCTCTGCTTCTCCAGCTTCTCCCTCTCCATCTTCTGCTCCACCAAATCAAATCATGAACCCGACTCGAACGATCAAAATTCGACATTCAAAACGTCGTCAGTCACAAACACGATCAATGATCAGGTGACCACCAACCTGTATGTAGACGCTCTCGGCGGCG]
[-] EMBL CF320807 [TATTTTTAGGGCCCGGAATTTCCCCTTTTTTTGGTAAGGGAAAACAAGGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATCCACCATTATTTATGTAGTTTCAACTGAACATTCACACAAGTTCGAAAAAGACATCTGGAATTTACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTACAGAGTAGCTCCTACTAATTCACATCAGTAAAATAAACACACCCCAGGGGCATGCTGTTATT ]
[+] EMBL CB626747 [ TATTTATGTAGTTTCAACTGAACATTCACACAAGTTCGAAAAAGACATCTGGAATTTACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTACAGAGTAGCTCCTACTAATTCACATCAGTAAAATAAACACACCCCAGGGGCATGCTGTTATTCATTTCTCGACTCCTTTCCCACTGTACAGAAAAAAAAAAAACTTTAAAAGAGTACTTAGCTACTAGTATCTGCAAATCAACATATCAGAAGCATTCAAACAGAACACCAAGCACCGGATCGTGTGATTGATCATCAGTTTCACTGTCACCCAGCGGATCAGGTTGGGCGAGCCTCCCCGCCCTTCTGCACTCAGCCGCCAAAAAAACAGAGGCAGACCATGCTGATCAGTTCATCATTCATAACCCAGAAATTAACCAAATAAGTTGGAGGAGATCGAGACGGCTAATTTGGTTGGTTTTCAATTTTACCTTATCCCCTTTGGCGGCGGCAGCCCTCTTCGCTGCATCGGCCTTGTCCTTGTCCGCCTTCCTCCTCTGCTTCTCCAGCTTCTCCCTCTCCATCTTCTGCTCCACCAAATCAAATCATGAACCCGACTCGAACGATCAAAATTCGACATTCAAAACGTCGTCAGTCACAAACACGATCAATGATCAGGTGACCACCAACCTGTATGTAGACGCTCTCGGCGGCG]
[-] EMBL BE040439 [ ACATCTGGAATTTACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTACAGAGTAGCTCCTACTAATTCACATCAGTAAAATAAACACACCCCAGGGGCATGCTGTTATTCATTTCTCGACTCCTTTCCCACTGTACAGAAAAAAAAAAAACTTTAAAAGAGTACTTAGCTACTAGTATCTGCAAATCAACATATCAGAAGCATTCAAACAGAACACCAAGCACCGGATCGTGTGATTGATCATCAGTTTCACTGTCACCCAGCGGATCACGTTGGGC ]
consensusID : consensus_15397#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 844 fasta sequence
[TTCCCCCCTTGGAAAAAGGGGTTTTTTTTCCAAGGGTTTTTTTTTGGTTAACCCCGGGTTTTTTCCCTCCCCCCGTTTTTTAAACCCGCCCCCTGATTTTTTTAAACCCCCCCTTTAGGGGGGATTTTTTTTTTGGGCCCCGAATTTTCCCCTTTTTTTGGAAGGGGGAAACCAGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAAAAAGACATCTGGAATTTACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTACAGAGTAGCTCCTACTAATTCACATCAGTAAAATAAACACA-CCCCAGGGGCATGCTGTTATTTATTTCTTGACTCCTTTCCCACTGTACAGAAAAAAACTTTAAAAGAGTACTTAGCTACTAGTATCTGCGAATCAACATATCAGAAGCATTCAAACAGAACACCAGCACCGGATCGTGTGATTGATCATCAGTTTCACTGTCACCCAGCGGATCA-GGTTGGGC-GAGCTTCCCCGCCCTTCTTATCCCCTTTGGCGGCGGCCGCCCTCTTCGCTGCATCGGCCTTGTCCTTGTCCGCCTTCCTCCTCTCCTTCTCCAGCTTCTCCCTCTCCATCTTCTGTATGTAGACGCTCTCGGCGGCGCGCTCCTCCTCGCTGAGCACCCTGCCGGTGCCGTCGCTGAAGTAGCGCGCCACGCGCCGGCCTCCCTCCATCCTCCTCGCCAAAACTGCCGCCGCCCACGCGGGTTGATTTTCTACTCCTTCAG]
[-] EMBL CF327016 [TTCCCCCCTTGGAAAAAGGGGTTTTTTTTCCAAGGGTTTTTTTTTGGTTAACCCCGGGTTTTTTCCCTCCCCCCGTTTTTTAAACCCGCCCCCTGATTTTTTTAAACCCCCCCTTTAGGGGGGATTTTTTTTTTGGGCCCCGAATTTTCCCCTTTTTTTGGAAGGGGGAAACCAGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAAAAAGACATCTGGAATTTACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTACAGAGTAGCTCCTACTAATTCACATCAGTttctactc ]
[+] EMBL CF314789 [ TTTTTTTTTTTCGAAAAAAACATCTGGAATTTACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTACAGAGTAGCTCCTACTAATTCACATCAGTAAAATAAACACA CCCCAGGGGCATGCTGTTATTTATTTCTTGACTCCTTTCCCACTGTACAGAAAAAAACTTTAAAAGAGTACTTAGCTACTAGTATCTGCGAATCAACATATCAGAAGCATTCAAACAGAACACCAGCACCGGATCGTGTGATTGATCATCAGTTTCACTGTCACCCAGCGGATCAGGGTTGGGCAGAGCTTCCCCGCCCTTCTTATCCCCTTTGGCGGCGGCCGCCCTCTTCGCTGCATCGGCCTTGTCCTTGTCCGCCTTCCTCCTCTCCTTCTCCAGCTTCTCCCTCTCCATCTTCTG ]
[-] EMBL CF314788 [ GAATTTACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTACAGAGTAGCTCCTACTAATTCACATCAGTAAAATAAACACACCCCCAGGGGCATGCTGTTATTTATTTCTTGACTCCTTTCCCACTGTACAGAAAAAAACTTTAAAAGAGTACTTAGCTACTAGTATCTGCGAATCAACATATCAGAAGCATTCAAACAGAACACCAGCACCGGATCGTGTGATTGATCATCAGTTTCACTGTCACCCAGCGGATCA GGTTGGGC GAGCTTCCCCGCCCTTCTTATCCCCTTTGGCGGCGGCCGCCCTCTTCGCTGCATCGGCCTTGTCCTTGTCCGCCTTCCTCCTCTCCTTCTCCAGCTTCTCCCTCTCCATCTTCTGTATGTAGACGCTCTCGGCGGCGCGCTCCTCCTCGCTGAGCACCCTGCCGGTGCCGTCGCTGAAGTAGCGCGCCACGCGCCGGCCTCCCTCCATCCTCCTCGCCAAAACTGCCGCCGCCCACGCGGGTTGATTTTCTACTCCTTCAG]
[-] EMBL CF317092 [ TGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTACAGAGTAGCTCCTACTAATTCACATCAGTAAAATAAACACA CCCCAGGGGCATGCTGTTATTTATTTCTTGACTCCTTTCCCACTGTACAGAAAAAAACTTTAAAAGAGTACTTAGCTACTAGTATCTGCGAATCAACATATCAGAAGCATTCAAACAGAACACCAGCACCGGATCGTGTGATTGATCATCAGTTTCACTGTCACCCAGCGGATCA GGTTGGGC GAGCTTCCCCGCCCTTCTTATCCCCTTTGGCGGCGGCCGCCCTCTTCGCTGCATCGGCCTTGTCCTTGTCCGCCTTCCTCCTCTCCTTCTCCAGCTTCTCCCTCTCCATCTTCTGTATGTAGACGCTCTCGGCGGCGCGCTCCTCCTCGCTGAGCACCCTGCCGGTGCCGTCGCTGAAGTAGCGCGCCACGCGCCGGCCTCCCTCCATCCTCCTCGCCAAAACTGCCGCCGCCCACGC ]
[-] EMBL CF316715 [ TTTATTTCTTGACTCCTTTCCCACTGTACAGAAAAAAACTTTAAAAGAGTACTTAGCTACTAGTATCTGCGAATCAACATATCAGAAGCATTCAAACAGAACACCAGCACCGGATCGTGTGATTGATCATCAGTTTCACTGTCACCCAGCGGATCA GGTTGGGC GAGCTTCCCCGCCCTTCTTATCCCCTTTGGCGGCGGCCGCCCTCTTCGCTGCATCGGCCTTGTCCTTGTCCGCCTTCCTCCTCTCCTTCTCCAGCTTCTCCCTCTCCATCTTCTGTATGTAGACGCTCTCGGCGGCGCGCTCCTCCTCGCTGAGCACCCTGCCGGTGCCGTCGCTGAAGTAGCGCGCCACGCGCCGGCCTCCCTCCATCCTCCTCGCCAAAACTGCCGCCGCCCACGC ]
[-] EMBL D42802 [ tnaaCCAGCGGATCA GGTTGGNC GAGCTTNACCGTCCTTCTTAACNCCTTTGNCGGCGNNCGCCCTCTTCGCTGCATCGGCCTTGTCCNTGTCCGNCTTCCTCCTCTCCTTCTCCAGCTTCTCCCTCTCCATCTTCTGTATGTAGACGCTCTCGGCGGCGCGCTCCTCCTCGCTGANCACCCTGCCGGTGCCGTCGCTGAAGTAGC CGCCACGCGCCGGCC ]
consensusID : consensus_15397#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 791 fasta sequence
[NNNNNNNNNNNNNNNNNNNNNNAGCACTCAGAGCAATCTCTCATTATCCACCATTATTTATGTAGTTTCAACTGAACATTCACACAAGTTCGAAAAAGACATCTGGAATTTACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTACAGAGTAGCTCCTACTAATTCACATCAGTAAAATAAACACA-CCCCAGGGGCATGCTGTTATTTATTTCTTGACTCCTTTCCCACTGTACAG-----AAAAAAACTTTAAAAGAGTACTTAGCTACTAGTATCTGCGAATCAACATATCAGAAGCATTCAAACAGAACACC-AGCACCGGATCGTGTGATTGATCATCAGTTTCACTGTCACCCAGCGGATCAGGTTGGGCGAGCTTCCCCGCCCTTCTTATCCCCTTTGGCGGCGGCCGCCCTCTTCGCTGCATCGGCCTTGTCCTTGTCCGCCTTCCTCCTCTCCTTCTCCAGCTTCTCCCTCTCCATCTTCTGTATGTAGACGCTCTCGGCGGCGCGCTCCTCCTCGCTGAGCACCCTGCCGGTGCCGTCGCTGAAGTAGCGCGCCACGC-GCCGGCCTCCCTCCATCCTCCTCGCCAAAACTGCCGCCGC------CCACGCGGGTTGATGAGGCGCCACCACCCTCGCCACGGCCGTTCTTGTAGCCATCTTCTTCTTGCTCCCCAAGAACGTCTTCTTCTTCCTCTTCTTGCTCCCCAAGAGTAGAGTACGACGACGACGCGTGGATGATGACTCGCGAATCGCGATCCCTCTCGGCCTCGTGCCGA]
[-] EMBL CA754211 [NNNNNNNNNNNNNNNNNNNNNNAGCACTCAGAGCAATCTCTCATTATCCACCATTATTTATGTAGTTTCAACTGAACATTCACACAAGTTCGAAAAAGACATCTGGAATTTACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTACAGAGTAGCTCCTACTAATTCACATCAGTAAAATAAACACA CCCCAGGGGCATGCTGTTATTTATTTCTTGACTCCTTTCCCACTGTACAG AAAAAAACTTTAAAAGAGTACTTAGCTACTAGTATCTGCGAATCAACATATCAGAAGCATTCAAACAGAACACC AGCACCGGATCGTGTGATTGATCATCAGTTTCACTGTCACCCAGCGGATCAGGTTGGGCGAGCTTCCCCGCCCTTCTTATCCCCTTTGGCGGCGGCCGCCCTCTTCGCTGCATCGGCCTTGTCCTTGTCCGCCTTCCTCCTCTCCTTCTCCAGCTTCTCCCTCTCCATCTTCTGTATGTAGACGCTCTCGGCGGCGCGCTCCTCCTCGCTGAGCACCCTGCCGGTGCCGTCGCTGAAGTAGCGCGCCACGC GCCGGCCTCCCTCCATCCTCCTCGCCAAAACTGCC ]
[+] EMBL CF278738 [ tttttttttAGCACTCAGAGCAATCTCTCATTATCCACCATTATTTATGTAGTTTCAACTGAACATTCACACAAGTTCGAAAAAGACATCTGGAATTTACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTACAGAGTAGCTCCTACTAATTCACATCAGTAAAATAAACACA CCCCAGGGGCATGCTGTTATTTATTTCTTGACTCCTTTCCCACTGTACAG AAAAAAACTTTAAAAGAGTACTTAGCTACTAGTATCTGCGAATCAACATATCAGAAGCATTCAAACAGAACACC AGCACCGGATCGTGTGATTGATCATCAGTTTCACTGTCAC ]
[+] EMBL CB664788 [ AGCAATCTCTCATTATCCACCATTATTTATGTAGTTTCAACTGAACATTCACACAAGTTCGAAAAAGACATCTGGAATTTACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTACAGAGTAGCTCCTACTAATTCACATCAGTAAAATAAACACA CCCCAGGGGCATGCTGTTATTTATTTCTTGACTCCTTTCCCACTGTACAG AAAAAAACTTTAAAAGAGTACTTAGCTACTAGTATCTGCGAATCAACATATCAGAAGCATTCAAACAGAACACC AGCACCGGATCGTGTGATTGATCATCAGTTTCACTGTCACCCAGCGGATCAGGTTGGGCGAGCTTCCCCGCCCTTCTTATCCCCTTTGGCGGCGGCCGCCCTCTTCGCTGCATCGGCCTTGTCCTTGTCCGCCTTCCTCCTCTCCTTCTCCAGCTTCTCCCTCTCCATCTTCTGTATGTAGACGCTCTCGGCGGCGCGCTCCTCCTCGCTGAGCACCCTGCCGGTGCCGTCGCTGAAGTAGCGCGCCACGC GCCGGCCTCCCTCCATCCTCCTCGCCAAAACTGCCGCCGC CCACGCGGGTTGATGAGGCGCCACCACCCTCGCCACGGCCGTTCTTGTAGCCATCTTCTTCTTGCTCCCCAAGAACGTCTTCTTCTTCCTCTTCTTGCTCCCCAAGAGTAGAGTACGACGACGACGCGTGGATGATGACTCGCGAATCGCGATCCCTCTCGGCCTCGTGCCGA]
[-] EMBL CB664787 [ GCAATCTCTCATTATCCACCATTATTTATGTAGTTTCAACTGAACATTCACACAAGTTCGAAAAAGACATCTGGAATTTACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTACAGAGTAGCTCCTACTAATTCACATCAGTAAAATAAACACA CCCCAGGGGCATGCTGTTATTTATTTCTTGACTCCTTTCCCACTGTACAG AAAAAAACTTTAAAAGAGTACTTAGCTACTAGTATCTGCGAATCAACATATCAGAAGCATTCAAACAGAACACC AGCACCGGATCGTGTGATTGATCATCAGTTTCACTGTCACCCAGCGGATCAGGTTGGGCGAGCTTCCCCGCCCTTCTTATCCCCTTTGGCGGCGGCCGCCCTCTTCGCTGCATCGGCCTTGTCCTTGTCCGCCTTCCTCCTCTCCTTCTCCAGCTTCTCCCTCTCCATCTTCTGTATGTAGACGCTCTCGGCGGCGCGCTCCTCCTCGCTGAGCACCCTGCCGGTGCCGTCGCTGAAGTAGCGCGCCACGC GCCGGCCTCCCTCCATCCTCCTCGCCAAAACTGCCGCCGC CCACGCGGGTTGATGAGGCGCCACCACCCTCGCCACGGCCGTTCTTGTAGCCATCTTCTTCTTGCTCCCCAAGAACGTCTTCTTCTTCCTCTTCTTGCTCCCCAAGAGTAGAGTACGACGACGACGCGTGGATGATGACTCGCGAATCGCGAT ]
[-] EMBL AK121139 [ ATCTCTCATTATCCACCATTATTTATGTAGTTTCAACTGAACATTCACACAAGTTCGAAAAAGACATCTGGAATTTACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTACAGAGTAGCTCCTACTAATTCACATCAGTAAAATAAACACA CCCCAGGGGCATGCTGTTATTTATTTCTTGACTCCTTTCCCACTGTACAG AAAAAAACTTTAAAAGAGTACTTAGCTACTAGTATCTGCGAATCAACATATCAGAAGCATTCAAACAGAACACC AGCACCGGATCGTGTGATTGATCATCAGTTTCACTGTCACCCAGCGGATCAGGTTGGGCGAGCTTCCCCGCCCTTCTTATCCCCTTTGGCGGCGGCCGCCCTCTTCGCTGCATCGGCCTTGTCCTTGTCCGCCTTCCTCCTCTCCTTCTCCAGCTTCTCCCTCTCCATCTTCTGTATGTAGACGCTCTCGGCGGCGCGCTCCTCCTCGCTGAGCACCCTGCCGGTGCCGTCGCTGAAGTAGCGCGCCACGC GCCGGCCTCCCTCCATCCTCCTCGCCAAAACTGCCGCCGC CCACGCGGGTTGATGAGGCGCCACCACCCTCGCCACGGCCGTTCTTGTAGCCATCTTCTTCTTGCTCCCCAAGAACGTCTTCTTCTTCCTCTTCTTGCTCCCCAAGAGTAGAGTACGACGACGACGCGTGGATGATGACTCGCGAATCGCGATCCCTCTC ]
[+] EMBL CB629003 [ GTTTCAACTGAACATTCACACAAGTTCGAAAAACACATCTGGAATTTACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTACAGAGTAGCTCCTACTAATTCACATCAGTAAAATAAACACA CCCCAGGGGCATGCTGTTATTCATTTCTCGACTCCTTTCCCACTGTACAGAAAAAAAAAAAACTTTAAAAGAGTACTTAGCTACTAGTATCTGCAAATCAACATATCAGAAGCATTCAAACAGAACACCAAGCACCGGATCGTGTGATTGATCATCAGTTTCACTGTCACCCAGCGGATCAGGTTGGGCGAGCCTCCCCGCCCTTCTTATCCCCTTTGGCGGCGGCAGCCCTCTTCGCTGCATCGGCCTTGTCCTTGTCCGCCTTCCTCCTCTGCTTCTCCAGCTTCTCCCTCTCCATCTTCTGTATGTAGACGCTCTCGGCGGCGCGCTCCTCCTCGCTGAGCACCCTGCCGGTGCCGTCGCTGAAGTAGCGCGCCACGCGGCCCG CTCCCTCCATCCTCCTCGCCAAAACGGCCGCCGCCCACGGCCACGCGGGTTGATGGGGCGCCACCACCCTCGCC ]
[-] EMBL CF278737 [ AAGACATCTGGAATTTACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTACAGAGTAGCTCCTACTAATTCACATCAGTAAAATAAACACACCCCCAGGGGCATGCTGTTATTTATTTCTTGACTCCTTTCCCACTGTACAG AAAAAAACTTTAAAAGAGTACTTAGCTACTAGTATCTGCGAATCAACATATCAGAAGCATTCAAACAGAACACC AGCACCGGATCGTGTGATTGATCATCAGTTTCACTGTCACCCAGCGGATCAGGTTGGGCGAGCTTCCCCGCCCTTCTTATCCCCTTTGGCGGCGGCCGCCCTCTTCGCTGCATCGGCCTTGTCCTTGTCCGCCTTCCTCCTCTCCTTCTCCAGCTTCTCCCTCTCCATCTTCTGTATGTAGACGCTCTCGGCGGCGCGCTCCTCCTCGCTGAGCACCCTGCCGGTGCCGTCGCTGAAGTAGCGCGCCACGC GCCGGCCTCCCTCCATCCTCCTCGCCAAAACTGCCGCCGC CCACGCGGGTTGATGAGGCGCCACCACCCTCGCCACGGCCGTTCTTGTAGCCATC ]
consensusID : consensus_15397#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 616 fasta sequence
[GCTACGTACCGGCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGGAATTTACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTACAGAGTAGCTCCTACTAATTCACATCAGTAAAATAAACACACCCCAGGGGCATGCTGTTATTTATTTCTTGACTCCTTTCCCACTGTACAGAAAAAAACTTTAAAAGAGTACTTAGCTACTAGTATCTGCGAATCAACATATCAGAAGCATTCAAACAGAACACCAGCACCGGATCGTGTGATTGATCATCAGTTTCACTGTCACCCAGCGGATCAGGTTGGGCGAGCTTCCCCGCCCTTCTTATCCCCTTTGGCGGCGGCCGCCCTCTTCGCTGCATCGGCCTTGTCCTTGTCCGCCTTCCTCCTCTCCTTCTCCAGCTTCTCCCTCTCCATCTTCTGTATGTAGACGCTCTCGACGGCGCGCTCCTCCTCGCTGAGCACCCTGCCGGCGCCGTCGCTGAAGTAGCGGGCCACGCCCCGGCCTCCCTCCATACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCGTGAC]
[+] EMBL CF319934 [GCTACGTACCGGCATGACAGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCTGGAATTTACACTGGCATATATGATGCGTCACAACACAAGCAGGTcc ]
[-] EMBL AU057592 [ TTTTTTTTTTTTCTGGAATTTACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTACAGAGTAGCTCCTACTAATTCACATCAGTAAAATAAACACACCCCAGGGGCATGCTGTTATTTATTTCTTGACTCCTTTCCCACTGTACAGAAAAAAACTTTAAAAGAGTACTTAGCTACTAGTATCTGCGAATCAACATATCAGAAGCATTCAAACAGAACACCAGCACCGGATCGTGTGATTGATCATCAGTTTCACTGTCACCCAGCGGATCAGGTTGGGCGAGCTTCCCCGCCCTTCTTATCCCCTTTGGCGGCGGCCGCCCTCTTCGCTGCATCGGCCTTGTCCTTGTCCGCCTTCCTCCTCTCCTTCTCC ]
[+] EMBL AU063673 [ ACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTACAGAGTAGCTCCTACTAATTCACATCAGTAAAATAAACACACCCCAGGGGCATGCTGTTATTTATTTCTTGACTCCTTTCCCACTGTACAGAAAAAAACTTTAAAAGAGTACTTAGCTACTAGTATCTGCGAATCAACATATCAGAAGCATTCAAACAGAACACCAGCACCGGATCGTGTGATTGATCATCAGTTTCACTGTCACCCAGCGGATCAGGTTGGGCGAGCTTCCCCGNCCTTCTTAT ]
[-] EMBL CF314784 [ TGTTATTTATTTCTTGACTCCTTTCCCACTGTACAGAAAAAAACTTTAAAAGAGTACTTAGCTACTAGTATCTGCGAATCAACATATCAGAAGCATTCAAACAGAACACCAGCACCGGATCGTGTGATTGATCATCAGTTTCACTGTCACCCAGCGGATCAGGTTGGGCGAGCTTCCCCGCCCTTCTTATCCCCTTTGGCGGCGGCCGCCCTCTTCGATGCATCGGCCTAGTCCTTGTCCGCCTTCCTCATATCATTCTCCAGCTTCTCCCTCTCCATCTTCTGTATGTAGACGCTCTCGACGGCGCGCTCCTCCTCGCTGAGCACCCTGCCGGCGCCGTCGCTGAAGTAGCGGGCCACGCCCCGGCCTCCCTCCATACCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCGTGAC]
consensusID : consensus_15397#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 597 fasta sequence
[TACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTACAGAATAGCTCCTACTAATTCACATCAGTAAAATAAACACACCCCAGGGGCATGCTGTTATTTATTTCTTGACTCCTTTCCCACTGTACAGAAAAAAACTTTAAAAGAGTACTTAGCTACTAGTATCTGCGAATCAACATATCAGAAGCATTCAAACAGAACACCAGCACCGGATCTCCTGCCCGAAATTCCGGCACGAACTCCGTGCCCAATTCCCCTGCACCCCGGGGGAATTCCCCTAATTCCTAAAACCGGCCGCCCCCGCGGGTGGGAACNCCCCCCTTTTGTTCCCCCTTTATTGANGGGTTTATTTCCNAACCTTNGGGGTTATCCNNGGNCCAAACTGTTTCCCCCNGTTTTAAAATGGTTTCCCCNCCCCCAATCCCCCCCCAAATTTAAACCGGAAAAANNAATTTTTTAACCCCGGGGNNCCCCAAAAANTTAACNNNCCCCCTTAATGGGTTTGCCCCCNGCCCCCNTTCCCTTNGGGAACTTTTTTGCCCTCTTAAAACGCACCGGAAAGGGGNGTTTTGGCCCCCCCCCCC]
[+] EMBL BE229019 [TACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTACAGAATAGCTCCTACTAATTCACATCAGTAAAATAAACACACCCCAGGGGCATGCTGTTATTTATTTCTTGACTCCTTTCCCACTGTACAGAAAAAAACTTTAAAAGAGTACTTAGCTACTAGTATCTGCGAATCAACATATCAGAAGCATTCAAACAGAACACCAGCACCGGATCTCCTGCCCGAAATTCCGGCACGAACTCCGTGCCCAATTCCCCTGCACCCCGGGGGAATTCCCCTAATTCCTAAAACCGGCCGCCCCCGCGGGTGGGAACNCCCCCCTTTTGTTCCCCCTTTATTGANGGGTTTATTTCCNAACCTTNGGGGTTATCCNNGGNCCAAACTGTTTCCCCCNGTTTTAAAATGGTTTCCCCNCCCCCAATCCCCCCCCAAATTTAAACCGGAAAAANNAATTTTTTAACCCCGGGGNNCCCCAAAAANTTAACNNNCCCCCTTAATGGGTTTGCCCCCNGCCCCCNTTCCCTTNGGGAACTTTTTTGCCCTCTTAAAACGCACCGGAAAGGGGNGTTTTGGCCCCCCCCCCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15397#1 TTCCCCCCTTGGAAAAAGGGGTTTTTTTTCCAAGGGTTTTTTTTTGGTTAACCCCGGGTT 60
consensus_15397#3 ------------------------------------------------------------
consensus_15397#2 ------------------------------------------------------------
consensus_15397#0 ------------------------------------------------------------
consensus_15397#4 ------------------------------------------------------------
consensus_15397#1 TTTTCCCTCCCCCCGTTTTTTAAACCCGCCCCCTGATTTTTTTAAACCCCCCCTTTAGGG 120
consensus_15397#3 ------------------------------------------------------------
consensus_15397#2 ------------------------------------------------------------
consensus_15397#0 ---------------------------TATTTTTAGGGCCCGGAATTTCCCCTTTTTTTG 33
consensus_15397#4 ------------------------------------------------------------
consensus_15397#1 GGGATTTTTTTTTTGGGCCCCGAATTTTCCCCTTTTTTTGGAAGGGGGAAACCAGGGTTT 180
consensus_15397#3 ------------------------------------------------------------
consensus_15397#2 ------------------------------------------------------------
consensus_15397#0 GTAAGGGAAAACAAGGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 93
consensus_15397#4 ------------------------------------------------------------
consensus_15397#1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 240
consensus_15397#3 ------------------------------------------GCTACGTACCGGCATGAC 18
consensus_15397#2 -----------------NNNNNNNNNNNNNNNNNNNNNNAGCACTCAGAGCAATCTCTCA 43
consensus_15397#0 TTTTTGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 153
consensus_15397#4 ------------------------------------------------------------
consensus_15397#1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGAAAAAGACATC 300
consensus_15397#3 AGTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT-----------TC 67
consensus_15397#2 TTATCCACCATTATTTATGTAGTTTCAACTGAACATTCACACAAGTTCGAAAAAGACATC 103
consensus_15397#0 TTATCCACCATTATTTATGTAGTTTCAACTGAACATTCACACAAGTTCGAAAAAGACATC 213
consensus_15397#4 ------------------------------------------------------------
consensus_15397#1 TGGAATTTACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTAC 360
consensus_15397#3 TGGAATTTACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTAC 127
consensus_15397#2 TGGAATTTACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTAC 163
consensus_15397#0 TGGAATTTACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTAC 273
consensus_15397#4 -------TACACTGGCATATATGATGCGTCACAACACAAGCAGGTACATTTCCCTTTTAC 53
*****************************************************
consensus_15397#1 AGAGTAGCTCCTACTAATTCACATCAGTAAAATAAACACACCCCAGGGGCATGCTGTTAT 420
consensus_15397#3 AGAGTAGCTCCTACTAATTCACATCAGTAAAATAAACACACCCCAGGGGCATGCTGTTAT 187
consensus_15397#2 AGAGTAGCTCCTACTAATTCACATCAGTAAAATAAACACACCCCAGGGGCATGCTGTTAT 223
consensus_15397#0 AGAGTAGCTCCTACTAATTCACATCAGTAAAATAAACACACCCCAGGGGCATGCTGTTAT 333
consensus_15397#4 AGAATAGCTCCTACTAATTCACATCAGTAAAATAAACACACCCCAGGGGCATGCTGTTAT 113
*** ********************************************************
consensus_15397#1 TTATTTCTTGACTCCTTTCCCACTGTACAGAAAAAAA-----CTTTAAAAGAGTACTTAG 475
consensus_15397#3 TTATTTCTTGACTCCTTTCCCACTGTACAGAAAAAAA-----CTTTAAAAGAGTACTTAG 242
consensus_15397#2 TTATTTCTTGACTCCTTTCCCACTGTACAGAAAAAAA-----CTTTAAAAGAGTACTTAG 278
consensus_15397#0 TCATTTCTCGACTCCTTTCCCACTGTACAGAAAAAAAAAAAACTTTAAAAGAGTACTTAG 393
consensus_15397#4 TTATTTCTTGACTCCTTTCCCACTGTACAGAAAAAAA-----CTTTAAAAGAGTACTTAG 168
* ****** **************************** ******************
consensus_15397#1 CTACTAGTATCTGCGAATCAACATATCAGAAGCATTCAAACAGAACACCA-GCACCGGAT 534
consensus_15397#3 CTACTAGTATCTGCGAATCAACATATCAGAAGCATTCAAACAGAACACCA-GCACCGGAT 301
consensus_15397#2 CTACTAGTATCTGCGAATCAACATATCAGAAGCATTCAAACAGAACACCA-GCACCGGAT 337
consensus_15397#0 CTACTAGTATCTGCAAATCAACATATCAGAAGCATTCAAACAGAACACCAAGCACCGGAT 453
consensus_15397#4 CTACTAGTATCTGCGAATCAACATATCAGAAGCATTCAAACAGAACACCA-GCACCGGAT 227
************** *********************************** *********
consensus_15397#1 CGTGTGATTGATCATCAGTTTCACTGTC---ACCCAGCGGATCAGG--TTGGGCGAGCTT 589
consensus_15397#3 CGTGTGATTGATCATCAGTTTCACTGTC---ACCCAGCGGATCAGG--TTGGGCGAGCTT 356
consensus_15397#2 CGTGTGATTGATCATCAGTTTCACTGTC---ACCCAGCGGATCAGG--TTGGGCGAGCTT 392
consensus_15397#0 CGTGTGATTGATCATCAGTTTCACTGTC---ACCCAGCGGATCAGG--TTGGGCGAGCCT 508
consensus_15397#4 CTCCTGCCCGAAATTCCGGCACGAACTCCGTGCCCAATTCCCCTGCACCCCGGGGGAATT 287
* ** ** ** * * ** **** * * ** * *
consensus_15397#1 CCCCGCCCTTCTTATCCCCTTTGGC-----------GGCGG-CCGCCCTCTTCGCTGCAT 637
consensus_15397#3 CCCCGCCCTTCTTATCCCCTTTGGC-----------GGCGG-CCGCCCTCTTCGCTGCAT 404
consensus_15397#2 CCCCGCCCTTCTTATCCCCTTTGGC-----------GGCGG-CCGCCCTCTTCGCTGCAT 440
consensus_15397#0 CCCCGCCCTTCTGCACTCAGCCGCCAAAAAAACAGAGGCAGACCATGCTGATCAGTTCAT 568
consensus_15397#4 CCCCTAATTCCTAAAACCGGCCGCCCCCGCGG--GTGGGAACNCCCCCCTTTTGTTCCCC 345
**** * ** * * * ** * * * * *
consensus_15397#1 CGGCCTTGTCC------TTGTCCGCCTTCCTCCTCTCCTTCTCCAGCTTCTCCCTC--TC 689
consensus_15397#3 CGGCCTTGTCC------TTGTCCGCCTTCCTCCTCTCCTTCTCCAGCTTCTCCCTC--TC 456
consensus_15397#2 CGGCCTTGTCC------TTGTCCGCCTTCCTCCTCTCCTTCTCCAGCTTCTCCCTC--TC 492
consensus_15397#0 CATTCATAACCCAGAAATTAACCAAATAAGTTGGAGGAGATCGAGACGGCTAATTTGGTT 628
consensus_15397#4 CTTTATTGANG---GGTTTATTTCCNAACCTTNGGGGTTATCCNNGGNCCAAACT----- 397
* * ** * * *
consensus_15397#1 CATCTTC---TGTATGTAGACGCTCTCGGCGGCG-CGCTCCTCCTCGCTGAGC--ACCCT 743
consensus_15397#3 CATCTTC---TGTATGTAGACGCTCTCGACGGCG-CGCTCCTCCTCGCTGAGC--ACCCT 510
consensus_15397#2 CATCTTC---TGTATGTAGACGCTCTCGGCGGCG-CGCTCCTCCTCGCTGAGC--ACCCT 546
consensus_15397#0 GGTTTTCAATTTTACCTTATCCCCTTTGGCGGCGGCAGCCCTCTTCGCTGCATCGGCCTT 688
consensus_15397#4 -GTTTCCCCCNGTTTTAAAATGGTTTCCCCNCCCCCAATCCCCCCC-CAAATTTAAACCG 455
* * * * * * * * ** * * * *
consensus_15397#1 GCCGGTGCCGTCGCTGAAGTAGCGCGCCACGCGCCGGCCTCCCTCCATCCTCCTCGCCAA 803
consensus_15397#3 GCCGGCGCCGTCGCTGAAGTAGCGGGCCACGCCCCGGCCTCCCTCCATACCCAAAAAAAA 570
consensus_15397#2 GCCGGTGCCGTCGCTGAAGTAGCGCGCCACGCGCCGGCCTCCCTCCATCCTCCTCGCCAA 606
consensus_15397#0 GTCCTTGTCCGCCTTCCTCCTCTGCTTCTCCAGCTTCTCCCTCTCCATCTTCTGCTCCAC 748
consensus_15397#4 GAAAAANNAATTTTTTAACCCCGGGGNNCCCCAAAAANTTAACNNNCCCCCTTAATGGGT 515
* * * * *
consensus_15397#1 -AACTGCCGCCGCCCACGCGGGTTGAT------TTTCTACTC-CTTCAG----------- 844
consensus_15397#3 -AAAAAAAAAAAAAAAAAAAAAAAAAAAAA-CACTGTCATGC-CGTGAC----------- 616
consensus_15397#2 -AACTGCCGCCGCCCACGCGGGTTGATGAGGCGCCACCACCCTCGCCACGGCCGTTCTTG 665
consensus_15397#0 CAAATCAAATCATGAACCCGACTCGAACGATCAAAATTCGAC-ATTCAAAACGTCGTCAG 807
consensus_15397#4 TTGCCCCCNGCCCCCNTTCCCTTNGGGAA--CTTTTTTGCCCTCTTAAAACGCACCGGAA 573
* *
consensus_15397#1 ------------------------------------------------------------
consensus_15397#3 ------------------------------------------------------------
consensus_15397#2 TAGCCATCTTCTTCTTGCTCCCCAAGAACGTCTTCTTCTTCCTCTTCTTGCTCCCCAAGA 725
consensus_15397#0 TCACAAACACGATCAATGATCAGGTGACCACCAACCTGTATGTAGACGCTCTCGGCGGCG 867
consensus_15397#4 AGGGGNGTTTTGGCCCCCCCCCCC------------------------------------ 597
consensus_15397#1 ------------------------------------------------------------
consensus_15397#3 ------------------------------------------------------------
consensus_15397#2 GTAGAGTACGACGACGACGCGTGGATGATGACTCGCGAATCGCGATCCCTCTCGGCCTCG 785
consensus_15397#0 ------------------------------------------------------------
consensus_15397#4 ------------------------------------------------------------
consensus_15397#1 ------
consensus_15397#3 ------
consensus_15397#2 TGCCGA 791
consensus_15397#0 ------
consensus_15397#4 ------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||