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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15404#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 17 consensus length = 1289 fasta sequence
[TCCAAGTCCAACGCAGCAGCTCGCCCCGCACAGCGCAGAGCGCACTCGCACAGATCGGATCCGTTGCTTTGAGCCTCTGACCCCTCCCTCCCCTGCGGTGGCCATGGCCGATCGCCTCGAGCTCCAGGGCAGGCACGGCAAGTCCCGCGTCCGCGTCTCCCGCGTCTGGCGCCGCCCCGCGGCCGCGGGAGGCCACGTCATCGTCGAGTGGAACGT-GGCCGTCAGCGTCGTCTCCGACTGCCTCCCCTCCTACACCTCCGACGACAACTCCGCCATCGTCGCCACCGATTCCATCAAGAACACCGTGTATGTGAAGGCCAAGGAATGCACGGAGATTGTCTCCATGGAGGAATTCGCGGTGATTCTTGGAAGGCATTTCACCTCGCTGTACCCGCAGGTCTCAGAGGCAACGGTGACCATCGCCGAGCGTCCATGGGAGCGTGTGGTTGTCGATGGGAAGCCTCATTCCCACGGGTTCAAACTTGGTGTTGAGAAGCACGT-CACAGAGGTCATTGTGAAGAAGTCTGGAAACTTGCTCATAAATTCTGGAATCCAAGGATAC-TCCCTG-CTAAAGACAACTCAGTCCGGGTTCGAAAAATTTGTGAGGGATCGCTACACACTTCTTCCTGATACAAGAGAAAGGATTGTAGCAACAGAAGTAACTGCCTGGTGGAGGTATCCTTTTGAGCATGTTTCCCAGATTCCATC-AAAGTCATTCTGCTTCACACAAAGGTATCAGGACGTAAAGAAAGTTCTTGCAGATACGTTCTTTGGTCCTCCTGATGTTGGAGTGTATAGTCCATCAGTGCAGAATACACT-ATACCTGATGGCTAAGGAAGTTCTCAACAGGTTCCCGGATATAGCATCTGTTCAGCTAAGGATGCCGAA-CCTCCACTTTA-TCCCTGTTAACTTAGGGAACAAAGAAAATCCAGGATTAGTGAAGTTTGCTGATGATGTGTACCTGCCGACCGATGAACCACACGGGACCATTGAAGCAACAGTGAGCCGCCCCAAGTCAAAGTTGTAAAAGCAATCAATGGTACTGGGGAAGCTCTCGGTCTGGTTTCTGAGGAAAAAAGAAGGAACTGTGTAACAATCACATGGGAAGGGGAAATAAATAAATAATGTTCAGAAATGAATTGTACATGGCCAGCTATAGTTACGCCATTGTAAATCTTGTACTGCCTTATTGTATGGAACCTCAAATGTACAACCTCCGTTTTTTAATAGATGACGCTTGACTTTTTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK071410 [TCCAAGTCCAACGCAGCAGCTCGCCCCGCACAGCGCAGAGCGCACTCGCACAGATCGGATCCGTTGCTTTGAGCCTCTGACCCCTCCCTCCCCTGCGGTGGCCATGGCCGATCGCCTCGAGCTCCAGGGCAGGCACGGCAAGTCCCGCGTCCGCGTCTCCCGCGTCTGGCGCCGCCCCGCGGCCGCGGGAGGCCACGTCATCGTCGAGTGGAACGT GGCCGTCAGCGTCGTCTCCGACTGCCTCCCCTCCTACACCTCCGACGACAACTCCGCCATCGTCGCCACCGATTCCATCAAGAACACCGTGTATGTGAAGGCCAAGGAATGCACGGAGATTGTCTCCATGGAGGAATTCGCGGTGATTCTTGGAAGGCATTTCACCTCGCTGTACCCGCAGGTCTCAGAGGCAACGGTGACCATCGCCGAGCGTCCATGGGAGCGTGTGGTTGTCGATGGGAAGCCTCATTCCCACGGGTTCAAACTTGGTGTTGAGAAGCACGT CACAGAGGTCATTGTGAAGAAGTCTGGAAACTTGCTCATAAATTCTGGAATCCAAGGATAC TCCCTG CTAAAGACAACTCAGTCCGGGTTCGAAAAATTTGTGAGGGATCGCTACACACTTCTTCCTGATACAAGAGAAAGGATTGTAGCAACAGAAGTAACTGCCTGGTGGAGGTATCCTTTTGAGCATGTTTCCCAGATTCCATC AAAGTCATTCTGCTTCACACAAAGGTATCAGGACGTAAAGAAAGTTCTTGCAGATACGTTCTTTGGTCCTCCTGATGTTGGAGTGTATAGTCCATCAGTGCAGGATACACT ATACCTGATGGCTAAGGAAGTTCTCAACAGGTTCCCGGATATAGCATCTGTTCAGCTAAGGATGCCGAA CCTCCACTTTA TCCCTGTTAACTTAGGGAACAAAGAAAATCCAGGATTAGTGAAGTTTGCTGATGATGTGTACCTGCCGACCGATGAACCACACGGGACCATTGAAGCAACAGTGAGCCGCCCCAAGTCAAAGTTGTAAAAGCAATCAATGGTACTGGGGAAGCTCTCGGTCTGGTTTCTGAGGAAAAAAGAAGGAACTGTGTAACAATCACATGGGAAGGGGAAATAAATAAATAATGTTCAGAAATGAATTGTACATGGCCAGCTATAGTTACGCCATTGTAAATCTTGTACTGCCTTATTGTATGGAACCTCAAATGTACAACCTCCGTTTTTTAATAGATGACGCTTG ]
[+] EMBL CB671877 [ GATCCGCTGCTTTGAGCCTCTGACCCCTCCCTCCCCTGCGGTGGCCATGGCCGATCGCCTCGAGCTCCAGGGCAGGCACGGCAAGTCCCGCGTCCGCGTCTCCCGCGTCTGGCGCCGCCCCGCGGCCGCGGGAGGCCACGTCATCGTCGAGTGGAACGT GGCCGTCAGCGTCGTCTCCGACTGCCTCCCCTCCTACACCTCCGACGACAACTCCGCCATCGTCGCCACCGATTCCATCAAGAACACCGTGTATGTGAAGGCCAAGGAATGCACGGAGATTGTCTCCATGGAGGAATTCGCGGTGATTCTTGGAAGGCATTTCACCTCGCTGTACCCGCAGGTCTCAGAGGCAACGGTGACCATCGCCGAGCGTCCATGGGAGCGTGTGGTTGTCGATGGGAAGCCTCATTCCCACGGGTTCAAACTTGGTGTTGAGAAGCACGT CACAGAGGTCATTGTGAAGAAGTCTGGAAACTTGCTCATAAATTCTGGAATCCAAGGATAC TCCCTG CTAAAGACAACTCAGTCCGGGTTCGAAAAATTTGTGAGGGATCGCTACACACTTCTTCCTGATACAAGAGAAAGGATTGTAGCAACAGAAGTAACTGCCTGGTGGAGGTATCCTTTTGAGCATGTTTCCCAGATTCCATC AAAGTCATTCTGCTTCACACAAAGGTATCAGGACGTAAAGAAAGTTCTTGCAGATACGTTCTTTGGTCCTCCTGATGTTGGAGTGTATAGTCCATCAGTGCAGAATACACT ATACCTGATGGC ]
[+] EMBL CB654857 [ CTTTGAGCCTCTGACCCCTCCCTCCCCTGCGGTGGCCCTGGCCGATCGCCTCGAGCTCCAGGGCAGGCACGGCAAGTCCCGCGTCCGCGTCTCCCGCGTCTGGCGCCGCCCCGCGGCCGCGGGAGGCCACGTCATCGTCGAGTGGAACGT GGCCGTCAGCGTCGTCTCCGACTGCCTCCCCTCCTACACCTCCGACGACAACTCCGCCATCGTCGCCACCGATTCCATCAAGAACACCGTGTATGTGAAGGCCAAGGAATGCACGGAGATTGTCTCCATGGATGAATTCGCGGTGATTCTTGGAAGGCATTTCACCTCGCTGTACCCGCAGGTCTCAGAGGCAACGGTGACCATCGCCGAGCGTCCATGGGAGCGTGTGGTTGTCTATGGGAAGCCTCATTCCCACGGGTTCAAACTTGGTGTTGAGAAGCACGT CACAGAGGTCATTGTGAAGAAGTCTGGAAACTTGCTCATAAATTCTGGAATCCAAGGATAC TCCCTG CTAAAGACAACTCAGTCCGGGTTCGAAAAATTTGTGAGGGATCGCTACACACTTCTTCCTGATACAAGAGAAAGGATTGTAGCAACAGAAGTAACTGCCTGGTGGAGGTATCCTTGTGAGCATGTTTCCCAGATTCCATC AAAGac ]
[+] EMBL CF304228 [ GAGGCCACGTCATCGTCGAGTGGAACGT GGCCGTCAGCGTCGTCTCCGACTGCCTCCCCTCCTACACCTCCGACGACAACTCCGCCATCGTCGCCACCGATTCCATCAAGAACACCGTGTATGTGAAGGCCAAGGAATGCACGGAGATTGTCTCCATGGAGGAATTCGCGGTGATTCTTGGAAGGCATTTCACCTCGCTGTACCCGCAGGTCTCAGAGGCAACGGTGACCATCGCCGAGCGTCCATGGGAGCGTGTGGTTGTCGATGGGAAGCCTCATTCCCACGGGTTCAAACTTGGTGTTGAGAAGCACGT CACAGAGGTCATTGTGAAGAAGTCTGGAAACTTGCTCATAAATTCTGGAATCCAAGGATAC TCCCTG CTAAAGACAACTCAGTCCGGGTTCGAAAAATTTGTGAGGGATCGCTACACACTTCTTCCTGATACAAGAGAAAGGATTGTAGCAACAGAAGTAACTGCCTGGTGGAGGTATCCTTTTGAGCATGTTTCCCAGATTCCATC AAAGTCATTCTGCTTCACACAAAGGTATCAGGACGTAAAGAAAGTTCTTGCAGATACGTTCTTTGGTCCTCCTGATGTTGGAGTGTATAGTCCATCAGTGCAGAATACACT AT ]
[+] EMBL C99560 [ ACGTCATCGTCGAGTGGAACGTNGGCCGTCAGCGTCGTCTCCGACTGCCTCCCCTCCTACACCTCCGACGACAACNCCGCCATCGTCGCCACCGATTCCATCAAGAACACCGTGTATGTGAAGGCCAAGGAATGCACGGAGATTGTCTCCATGGAGGAATTCGCGGTGATTCTTGGAAGGCATTTCACCTCGCTGTACCCGCA GTCTCAGAGGCAACGGTGACCATCGCCGAGCGTCCATGGGAGCGTGTGGTTGTCGATGGGAAGCCTCATTCCCACGGGTTCAAACTTGGTGTTGAGAAGCACGTGCACAGAGGTCATTGTGAAGAAGTCTGGAAACTTGCTCATAAATTCTGGAATCCAAGGATACNACCCTGNCTAAAGACAACTCAGTCCGGGTTCGAAAAATTTGTGAGGGATCGCTACACACTTCTTCCTGATACAAGAGAAAGGATTGTAGCAACAGAAGTAACTGCCTGGTGGAGGTATCCTTTTGAGCATGTTTCCCAGATTCCAT ]
[-] EMBL AU075571 [ CGTCATCGTCGAGTGGAACGN GGCCGTCAGCGTCGTCTCCGACTGCCTCCCCTCCTACACCTCCGACGACAACTCCGCCATCGTCGCCACCGATTCCATCAAGAACACCGTGTATGTGAAGGCCAAGGAATGCACGGAGATTGTCTCCATGGAGGAATTCGCGGTGATTCTTGGAAGGCATTTCACCTCGCTGTACCCGCA GTCTCAGAGGCAACGGTGACCATCGCCGAGCGTCCATGGGAGCGTGTGGTTGTCGATGGGAAGCCTCATTCCCACGGGTTCAAACTTGGTGTTGAGAAGCACGT CACAGAGGTCATTGTGAAGAAGTCTGGAAACTTGCTCATAAATTCTGGAATCCAAGGATAC TCCCTG CTAAAGACAACTCAGTCCGGGTTCGAAAAATTTGTGAGGGATCGCTACACACTTCTTCCTGATACAAGAGAAAGGATTGTAGCAACAGAAGTAACTGCCTGGTGGAGGTATCCTTTTGAGCATGTTTCCCAGATTCCATC AAAGTCATTCTGCTTCACACAAAGGTATCAGGACGTAAAGAAAGTTCTTGCAGATACGTTCTTTGGTCCTCCTGATGTTGGAGTGTATAGTCCATCAGTGCAGAATACACT ATA CTGATGGCTAAAGAAGTTCTCAACAAGTTNCCc ]
[+] EMBL AU070592 [ CGTCATCGTCGAGTGGAACGT GGCCGTCAGCGTCGTCTCCGACTGCCTCCCCTCCTACACCTCCGACGACAACTCCGCCATCGTCGCCACCGATTCCATCAAGAACACCGTGTATGTGAAGGCCAAGGAATGCACGGAGATTGTCTCCATGGAGGAATTCGCGGTGATTCTTGGAAGGCATTTCACCTCGCTGTACCCGCA GTCTCAGAGGCAACGGTGACCATCGCCGAGCGTCCATNGGAGCGTGTGGTTGTCGATGGGAAGCCTCATTCCCACGGGNTCAAACTTGGTGTTGAGAAGCACGT CACAGAGGTCATTGTGAAGAAGTCTGGAAACTTGCTCATAAATTCTGGAATCCAAGGATAC TCCCTG CTAAAGACAACTCAGTCCGGGTTCGAAAAATTTNTGAGGGATCGCTACACACTTCTTCCTGATACAAGAGAAAGGATTGTAGCAACAGAAGTAACTGCCTGGTGGAGGTATCCTTTTGAGCATGTTTCCCAGATTCC ]
[+] EMBL CF322797 [ CGTCATCGTCGAGTGGAACGT GGCCGTCAGCGTCGTCTCCGACTGCCTCCCCTCCTACACCTCCGACGACAACTCCGCCATCGTCGCCACCGATTCCATCAAGAACACCGTGTATGTGAAGGCCAAGGAATGCACGGAGATTGTCTCCATGGAGGAATTCGCGGTGATTCTTGGAAGGCATTTCACCTCGCTGTACCCGCAGGTCTCAGAGGCAACGGTGACCATCGCCGAGCGTCCATGGGAGCGTGTGGTTGTCGATGGGAAGCCTCATTCCCACGGGTTCAAACTTGGTGTTGAGAAGCACGT CACAGAGGTCATTGTGAAGAAGTCTGGAAACTTGCTCATAAATTCTGGAATCCAAGGATAC TCCCTG CTAAAGACAACTCAGTCCGGGTTCGAAAAATTTGTGAGGGATCGCTACACACTTCTTCCTGATACAAGAGAAAGGATTGTAGCAAC ]
[-] EMBL CB671878 [ CACCTCGCTGTACCCGCAGGTCTCAGAGGCAACGGTGACCATCGCCGAGCGTCCATGGGAGCGTGTGGTTGTCGATGGGAAGCCTCATTCCCACGGGTTCAAACTTGGTGTTGAGAAGCACGT CACAGAGGTCATTGTGAAGAAGTCTGGAAACTTGCTCATAAATTCTGGAATCCAAGGATAC TCCCTG CTAAAGACAACTCAGTCCGGGTTCGAAAAATTTGTGAGGGATCGCTACACACTTCTTCCTGATACAAGAGAAAGGATTGTAGCAACAGAAGTAACTGCCTGGTGGAGGTATCCTTTTGAGCATGTTTCCCAGATTCCATC AAAGTCATTCTGCTTCACACAAAGGTATCAGGACGTAAAGAAAGTTCTTGCAGATACGTTCTTTGGTCCTCCTGATGTTGGAGTGTATAGTCCATCAGTGCAGAATACACT ATACCTGATGGCTAAGGAAGTTCTCAACAGGTTCCCGGATATAGCATCTGTTCAGCTAAGGATGCCGAA CCTCCACTTTA TCCCTGTTAACTTAGGGAACAAAGAAAATCCAGGATTAGTGAAGTTTGCTGATGATGTGTACCTGCCGACCGATGAACCACACGGGACCATTGAAGCAACAGTGAGCCGCCCCAAGTCAAAGTTGTAAAAGCAATCAATGGTACTGGGGAAGCTCTCGGTCTGGTTTCTGAGGAAAAAAGAAGGAACTGTGTAACAATCACATGGGAAGGGGAAATAAATAAAT ]
[-] EMBL CB654858 [ GTCATTGTGAAGAAGTCTGGAAACTTGCTCATAAATTCTGGAATCCAAGGATAC TCCCTG CTAAAGACAACTCAGTCCGGGTTCGAAAAATTTGTGAGGGATCGCTACACACTTCTTCCTGATACAAGAGAAAGGATTGTAGCAACAGAAGTAACTGCCTGGTGGAGGTATCCTTTTGAGCATGTTTCCCAGATTCCATC AAAGTCATTCTGCTTCACACAAAGGTATCAGGACGTAAAGAAAGTTCTTGCAGATACGTTCTTTGGTCCTCCTGATGTTGGAGTGTATAGTCCATCAGTGCAGAATACACT ATACCTGATGGCTAAGGAAGTTCTCAACAGGTTCCCGGATATAGCATCTGTTCAGCTAAGGATGCCGAA CCTCCACTTTA TCCCTGTTAACTTAGGGAACAAAGAAAATCCAGGATTAGTGAAGTTTGCTGATGATGTGTACCTGCCGACCGATGAACCACACGGGACCATTGAAGCAACAGTGAGCCGCCCCAAGTCAAAGTTGTAAAAGCAATCAATGGTACTGGGGAAGCTCTCGGTCTGGTTTCTGAGGAAAAAAGAAGGAACTGTGTAACAATCACATGGGAAGGGGAAATAAATAAATAATGTTCAGAAATGAATTGGGCATGGCCAGCTATAGTTACGCCATTGTAAATCTTGTACTGCCTTATTGTATGGAACCTCAAATGT TTTCATGCGTTTTTTAATAGATGACGCTTGACTTTTTCTCACTAAAAgga ]
[+] EMBL CF309610 [ CTG CTAAAGACAACTCAGTCCGGGTTCGAAAAATTTGTGAGGGATCGCTACACACTTCTTCCTGATACAAGAGAAAGGATTGTAGCAACAGAAGTAACTGCCTGGTGGAGGTATCCTTTTGAGCATGTTTCCCAGATTCCATC AAAGTCATTCTGCTTCACACAAAGGTATCAGGACGTAAAGAAAGTTCTTGCAGATACGTTCTTTGGTCCTCCTGATGTTGGAGTGTATAGTCCATCAGTGCAGAATACACT ATACCTGATGGCTAAGGAAGTTCTCAACAGGTTCCCGGATATAGCATCTGTTCAGC AAGGATGCCGAA CCTCCACTTTA TCCCTGTTAACTTAGGGAACAAAGAAAATCCAGGATTAGTGAAGTTTGCTGATGATGTGTACCTGCCGACCGATGAACCACACGGGACCATTGAAGCAACAGTGAGCCGCCCCAAGTCAAAGTTGTAAAAGCAATCAATGGTACTGGGGAAGCTCTCGGTCTGGTTTCTGAGGAAAAAAGAAGGAACTGTGTAACAATCACATGGGAAGGGGAAATAAATAAATAATGTTCAGAAATGA ]
[-] EMBL CF309609 [ TGAGCATGTTTCCCAGATTCCATCAAAAGTCATTCTGCTTCACACAAAAGGATCAGGACGTAAAGAAAGTTCTTGCAGATACGTTCTTTGGTCCTCCTGATGTTGGAGTGTATAGTCCATCAGTGCAGAATACACTAATACTTGATGGCTAAGGAAGTTCTCAACAGGTTCCCGGATATAGCATCTGTTCAGC AAGGATGCCGAACCCTCCACTTTANTCCCTGTTAACTTAGGGAACAAAGAAAATCCAGGATTAGTGAAGTTTGCTGATGATGTGTACCTGCCGACCGATGAACCACACGGGACCATTGAAGCAACAGTGAGCCGCCCCAAGTCAAAGTTGTAAAAGCAATCAATGGTACTGGGGAAGCTCTCGGTCTGGTTTCTGAGGAAAAAAGAAGGAACTGTGTAACAATCACATGGGAAGGGGAAATAAATAAATAATGTTCAGAAATGAATTGTACATGGCCAGCTATAGTTACGCCATTGTAAATCTTGTACTGCCTTATTGTATGGAACCTCAAATGTACAACCTCCGTTTTTTAATAGATGACGCTTGACTTTTTCTCAAAAAA ]
[+] EMBL CF311309 [ AGTCATTCTGCTTCACACAAAGGTATCAGGACGTAAAGAAAGTTCTTGCAGATACGTTCTTTGGTCCTCCTGATGTTGGAGTGTATAGTCCATCAGTGCAGAATACACT ATACCTGATGGCTAAGGAAGTTCTCAACAGGTTCCCGGATATAGCATCTGTTCAGCTAAGGATGCCGAA CCTCCACTTTA TCCCTGTTAACTTAGGGAACAAAGAAAATCCAGGATTAGTGAAGTTTGCTGATGACGTGTACCTGCCGACCGATGAACCACACGGGACCATTGAAGCAACAGTGAGCCGCCCCAAGTCAAAGTTGTAAAAGCAATCAATGGTACTGGGGAAGCTCTCGGTCTGGTTTCTGAGGAAAAAAGAAGGAACTGTGTAACAATCACATGGGAAGGGGAAATAAATAAATAATGTTCAGAAATGAATTGTACATGGCCAGCTATAGTTACGCCATTGTAAATCTTGTACTGCCTTATTGT ]
[-] EMBL CF311310 [ AA CCTCCACTTTA TCCCTGTTAACTTAGGGAACAAAGAAAATCCAGGATTAGTGAAGTTTGCTGATGACGTGTACCTGCCGACCGATGAACCACACGGGACCATTGAAGCAACAGTGAGCCGCCCCAAGTCAAAGTTGTAAAAGCAATCAATGGTACTGGGGAAGCTCTCGGTCTGGTTTCTGAGGAAAAAAGAAGGAACTGTGTAACAATCACATGGGAAGGGGAAATAAATAAATAATGTTCAGAAATGAATTGTACATGGCCAGCTATAGTTACGCCATTGTAAATCTTGCACTGCCTTATTGTATGGAACCTCAAATGTACAACCTCCGTTTT ]
[+] EMBL AU081589 [ CCCTGTTAACTTAGGGAACAAAGAAAATCCAGGATTAGTGAAGTTTGCTGATGATGTGTACCTGCCGACCGATGAACCACACGGGACCATTGAAGCAACAGTGAGCCGCCCCAAGTCAAAGTTGTAAAAGCAATCAATGGTACTGGGGAAGCTCTCGGTCTGGTTTCTGAGGAAAAAAGAAGGAACTGTGTAACAATCACATGGGAAGGGGAAATAAATAAATAATGTTCAGAAATGAATTGTACATGGCCAGCTATAGTTACGCCATTGTAAATCTTGTACTGCCTTATTGTATGGAACCTCAAATGTACAACCTCCGTTTTTTAATAGATGACGCTTGACTTTTTCTCAAAAA ]
[+] EMBL C99559 [ CGATGNACCACACGGGACCATTGAAGCAACAGTGAGCCGCCCCAAGTCAAAGTTGTAAAAGCAATCAATGGTACTGGGGAAGCTCTCGGTCTGGTTTCTGAGGAAAAAAGAAGGAACTGTGTNACAATCACATGGGAAGGGGAAATAAATAAATAATGTTCAGAAATGAATTGTACATGGCCAGCTATAGTTACGCCATTGTAAATCTTGTACTGCCTTATTGTATGGAACCNCAAATGTACAACCTCCGTTTTTTAATAGATGACGCTTGACTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU081611 [ AAAGTTNTAAAAGCAATCAATGGTNCTGGGGAAGCTCNCGGTCTGGTTTCTGAGGAAAAAAGAAGGAACTNTGTNACAATCNCATGGGAAGGGGAAATAAATAAATAATGTTCAGAAATGAATTGTNCATGGCCAGCTATAGTTACNCCATTGTAAATCTTGTACTGCCTTATTGTATGGAACCTNAAATNTNCAACCTCCGTTTTTTAATAGATGACNCTTGACTTTTTNTCAAAAAAAAAAAAAAAAAAAAAA ]
consensusID : consensus_15404#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1060 fasta sequence
[CACTCGCACAGATCGGATCCGTTGCTTTGAGCCTCTGACCCCTCCCTCCCCTGCGGTGGCCATGGCCGATCGCCTCGAGCTCCAGGGCAGGCACGGCAAGTCCCGCGTCCGCGTCTCCCGCGTCTGGCGCCGCCCCGCGGCCGCGGGAGGCCACGTCATCGTCGAGTGGAACGT-GGCCGTCAGCGTCGTCTCCGACTGCCTCCCCTCCTACACCTCCGACGACAACTCCGCCATCGTCGCCACCGATTCCATCAAGAACACCGTGTATGTGAAGGCCAAGGAATGCACGGAGATTGTCTCCATGGAGGAATTCGCGGTGATTCTTGGAAGGCATTTCACCTCGCTGTACCCGCAGGTCTCAGAGGCAACGGTGACCATCGCCGAGCGTCCATGGGAGCGTGTGGTTGTCGATGGGAAGCCTCATTCCCACGGGTTCAAACTTGGTGTTGAGAAGCACGTCACAGAGGTCATTGTGAAGAAGTCTGGAAACTTGCTCATAAATTCTGGAATCCAAGGATACTCCCTGCTAAAGACAACTCAGGTATTTTTGCCGGATGCTAACCTTTCACACTGGGGTTGCTTGGGTTCACTTGTAAAGACAGTTTATGTATTGTACTTTTGAACTAGGAATAAACTTGTAACAAGTGCTACTACGCATGCTTGAAGGAATTAAATGCAAAAATGTGAGGTAAAGTGCTAGCTGAAGTGTCAGAAAAGCAAAATAATTTAACTAGTTAACTTCTGATGAAGTATAAACGAAGGAAATATAAATTTTAACAAAACCAGACTGCTTTTTGTCATACATATATGCTCAATTTGTACTAGTGCATGCTAACCTTTCACCACCTTGTCTCTCTCAGTCCGGGTTCGAAAAATTTGTGAGGGATCGCTACACACTTCTTCCTGATACAAGAGAAAGGATTGTAGCAACAGAAGTAACTGCCTGGTGGAGGTCTGCTACTCTTCTTATATACCTGAGAAAAAGTCAACGGCGTCATATATTAAAAAACGGAGGGAGTACCAACTTGCACATTTGAAGGCTAAAGGTTATAAATTTTCT]
[+] EMBL AK065779 [CACTCGCACAGATCGGATCCGTTGCTTTGAGCCTCTGACCCCTCCCTCCCCTGCGGTGGCCATGGCCGATCGCCTCGAGCTCCAGGGCAGGCACGGCAAGTCCCGCGTCCGCGTCTCCCGCGTCTGGCGCCGCCCCGCGGCCGCGGGAGGCCACGTCATCGTCGAGTGGAACGT GGCCGTCAGCGTCGTCTCCGACTGCCTCCCCTCCTACACCTCCGACGACAACTCCGCCATCGTCGCCACCGATTCCATCAAGAACACCGTGTATGTGAAGGCCAAGGAATGCACGGAGATTGTCTCCATGGAGGAATTCGCGGTGATTCTTGGAAGGCATTTCACCTCGCTGTACCCGCAGGTCTCAGAGGCAACGGTGACCATCGCCGAGCGTCCATGGGAGCGTGTGGTTGTCGATGGGAAGCCTCATTCCCACGGGTTCAAACTTGGTGTTGAGAAGCACGTCACAGAGGTCATTGTGAAGAAGTCTGGAAACTTGCTCATAAATTCTGGAATCCAAGGATACTCCCTGCTAAAGACAACTCAGGTATTTTTGCCGGATGCTAACCTTTCACACTGGGGTTGCTTGGGTTCACTTGTAAAGACAGTTTATGTATTGTACTTTTGAACTAGGAATAAACTTGTAACAAGTGCTACTACGCATGCTTGAAGGAATTAAATGCAAAAATGTGAGGTAAAGTGCTAGCTGAAGTGTCAGAAAAGCAAAATAATTTAACTAGTTAACTTCTGATGAAGTATAAACGAAGGAAATATAAATTTTAACAAAACCAGACTGCTTTTTGTCATACATATATGCTCAATTTGTACTAGTGCATGCTAACCTTTCACCACCTTGTCTCTCTCAGTCCGGGTTCGAAAAATTTGTGAGGGATCGCTACACACTTCTTCCTGATACAAGAGAAAGGATTGTAGCAACAGAAGTAACTGCCTGGTGGAGGTCTGCTACTCTTCTTATATACCTGAGAAAAAGTCAACGGCGTCATATATTAAAAAACGGAGGGAGTACCAACTTGCACATTTGAAGGCTAAAGGTTATAAATTTTCT]
[+] EMBL AU081590 [ CGTCATCGTCGAGTGGAACGTAGGCCGTCAGCGTCGTCTCCGACTGCCTCCCCTCCTACACCTCCGACGACAACTCCGCCATCGTCGCCACCGATTCCATCAAGAACACCGTGTATGTGAAGGCCAAGGAATGCACGGAGATTGTCTCCATGGAGGAATTCGCGGTGATTCTTGGAAGGCATTTCACCTCGCTGTACCCGCA GTCTCAGAGGCAACGGTGACCATCGCCGAGCGTCCATGGGAGCGTGTGGTTGTCGATGGGAAGCCTCATTCCCACGGGTTCAAACTTGGTGTTGAGAAGCACGTCACAGAGGTCATTGTGAAGAAGTCTGGAAACTTGCTCATAAATTCTGGAATCCAAGGATACTCCCT ]
[+] EMBL CA763136 [ ATTCCATCAAGAACACCGTGTATGTGAAGGCCAAGGAATGCACGGAGATTGTCTCCATGGAGGAATTCGCGGTGATTCTTGGAAGGCATTTCACCTCGCTGTACCCGCAGGTCTCAGAGGCAACGGTGACCATCGCCGAGCGTCCATGGGAGCGTGTGGTTGTCGATGGGAAGCCTCATTACCACGGGTTCAAACTTGGTGTTGAGAAGCACGTCACAGAGGTCATTGTGAAGAAG ]
consensusID : consensus_15404#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 746 fasta sequence
[CAGATCGGATCCGTTGCTTTGAGCCTCTGACCCCTCCCTCCCCTGCGGTGGCCATGGCCGATCGCCTCGAGCTCCAGGGCAGGCACGGCAAGTCCCGCGTCCGCGTCTCCCGCGTCTGGCGCCGCCCCGCGGCCGCGGGAGGCCACGTCATCGTCGAGTGGAACGTGGCCGTCAGCGTCGTCTCCGACTGCCTCCCCTCCTACACCTCCGACGACAACTCCGCCATCGTCGCCACCGATTCCATCAAGAACACCGTAAGCCCGCGATCCCTCGCGCTTCCTTGTCTGGTTCTAGAATCTGGATTGATTCGGTGTGGTTGTTTTGTTCGGTCAGGTGTATGTGAAGGCCAAGGAATGCACGGAGATTGTCTCCATGGAGGAATTCGCGGTGATTCTTGGAAGGCATTTCACCTCGCTGTACCCGCAGGTCTCAGAGGCAACGGTGACCATCGCCGAGCGTCCATGGGAGCGTGTGGTTGTCGATGGGAAGCCTCATTCCCACGGGTTCAAACTTGGTGTTGAGAAGCACGTCACAGAGGTCATTGTGAAGAAGTCTGGAAACTTGCTCATAAATTCTGGAATCCAAGGATACTCCCTGCTAAAGACAACTCAGTCCGGGTTCGAAAAATTTGTGAGGGATCGCTACACACTTCTTCCTGATACAAGAGAAAGGATTGTAGCAACAGAAGTAACTGCCTGGTGGAGGTATCCTTTTGAGCATGTTTCCCAGATTCCATCAAAGTCATT]
[+] EMBL CB676723 [CAGATCGGATCCGTTGCTTTGAGCCTCTGACCCCTCCCTCCCCTGCGGTGGCCATGGCCGATCGCCTCGAGCTCCAGGGCAGGCACGGCAAGTCCCGCGTCCGCGTCTCCCGCGTCTGGCGCCGCCCCGCGGCCGCGGGAGGCCACGTCATCGTCGAGTGGAACGTGGCCGTCAGCGTCGTCTCCGACTGCCTCCCCTCCTACACCTCCGACGACAACTCCGCCATCGTCGCCACCGATTCCATCAAGAACACCGTAAGCCCGCGATCCCTCGCGCTTCCTTGTCTGGTTCTAGAATCTGGATTGATTCGGTGTGGTTGTTTTGTTCGGTCAGGTGTATGTGAAGGCCAAGGAATGCACGGAGATTGTCTCCATGGAGGAATTCGCGGTGATTCTTGGAAGGCATTTCACCTCGCTGTACCCGCAGGTCTCAGAGGCAACGGTGACCATCGCCGAGCGTCCATGGGAGCGTGTGGTTGTCGATGGGAAGCCTCATTCCCACGGGTTCAAACTTGGTGTTGAGAAGCACGTCACAGAGGTCATTGTGAAGAAGTCTGGAAACTTGCTCATAAATTCTGGAATCCAAGGATACTCCCTGCTAAAGACAACTCAGTCCGGGTTCGAAAAATTTGTGAGGGATCGCTACACACTTCTTCCTGATACAAGAGAAAGGATTGTAGCAACAGAAGTAACTGCCTGGTGGAGGTATCCTTTTGAGCATGTTTCCCAGATTCCATCAAAGTCATT]
consensusID : consensus_15404#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 377 fasta sequence
[GNCCTGCCGCCCGATGACCACACGGGACCATTGAAGCNACAGTGAGCCGCCCCAAGTCAAAGTTGTNAAAGCAATCAATGGTACTGGGGAAGCTCTCGGTCTGGTTTCTGAGGGAAAAAGAAGGAACTGTGTTACAATCACATGGGAAGGGGNAATAAATAAATAATGTTCAGAAATGAATTGTACATGGCCNGCTATAGTTACGCCATTGTAAATCTTGTACTGCCTTATTGTATGGAACCTCAAACATGTGAGAAAAAGTNAACGGCGTNATATATTTAAAAACGGAGGGAGTACCCACTTGNACATTTGAAGGCTNAAGGTTATAAAATTTCTTCTCCTTTGTACTTNAAAAAAAACACAACCANACGCTANGN]
[-] EMBL C26378 [GNCCTGCCGCCCGATGACCACACGGGACCATTGAAGCNACAGTGAGCCGCCCCAAGTCAAAGTTGTNAAAGCAATCAATGGTACTGGGGAAGCTCTCGGTCTGGTTTCTGAGGGAAAAAGAAGGAACTGTGTTACAATCACATGGGAAGGGGNAATAAATAAATAATGTTCAGAAATGAATTGTACATGGCCNGCTATAGTTACGCCATTGTAAATCTTGTACTGCCTTATTGTATGGAACCTCAAACATGTGAGAAAAAGTNAACGGCGTNATATATTTAAAAACGGAGGGAGTACCCACTTGNACATTTGAAGGCTNAAGGTTATAAAATTTCTTCTCCTTTGTACTTNAAAAAAAACACAACCANACGCTANGN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_15404#1 ------------------------------------------CACTCGCACAGATCGGAT 18
consensus_15404#2 --------------------------------------------------CAGATCGGAT 10
consensus_15404#0 TCCAAGTCCAACGCAGCAGCTCGCCCCGCACAGCGCAGAGCGCACTCGCACAGATCGGAT 60
consensus_15404#3 ------------------------------------------------------------
consensus_15404#1 CCGTTGCTTTGAGCCTCTGACCCCTCCCTCCCCTGCGGTGGCCATGGCCGATCGCCTCGA 78
consensus_15404#2 CCGTTGCTTTGAGCCTCTGACCCCTCCCTCCCCTGCGGTGGCCATGGCCGATCGCCTCGA 70
consensus_15404#0 CCGTTGCTTTGAGCCTCTGACCCCTCCCTCCCCTGCGGTGGCCATGGCCGATCGCCTCGA 120
consensus_15404#3 ------------------------------------------------------------
consensus_15404#1 GCTCCAGGGCAGGCACGGCAAGTCCCGCGTCCGCGTCTCCCGCGTCTGGCGCCGCCCCGC 138
consensus_15404#2 GCTCCAGGGCAGGCACGGCAAGTCCCGCGTCCGCGTCTCCCGCGTCTGGCGCCGCCCCGC 130
consensus_15404#0 GCTCCAGGGCAGGCACGGCAAGTCCCGCGTCCGCGTCTCCCGCGTCTGGCGCCGCCCCGC 180
consensus_15404#3 ------------------------------------------------------------
consensus_15404#1 GGCCGCGGGAGGCCACGTCATCGTCGAGTGGAACGTGGCCGTCAGCGTCGTCTCCGACTG 198
consensus_15404#2 GGCCGCGGGAGGCCACGTCATCGTCGAGTGGAACGTGGCCGTCAGCGTCGTCTCCGACTG 190
consensus_15404#0 GGCCGCGGGAGGCCACGTCATCGTCGAGTGGAACGTGGCCGTCAGCGTCGTCTCCGACTG 240
consensus_15404#3 ------------------------------------------------------------
consensus_15404#1 CCTCCCCTCCTACACCTCCGACGACAACTCCGCCATCGTCGCCACCGATTCCATCAAGAA 258
consensus_15404#2 CCTCCCCTCCTACACCTCCGACGACAACTCCGCCATCGTCGCCACCGATTCCATCAAGAA 250
consensus_15404#0 CCTCCCCTCCTACACCTCCGACGACAACTCCGCCATCGTCGCCACCGATTCCATCAAGAA 300
consensus_15404#3 ------------------------------------------------------------
consensus_15404#1 CACCGT------------------------------------------------------ 264
consensus_15404#2 CACCGTAAGCCCGCGATCCCTCGCGCTTCCTTGTCTGGTTCTAGAATCTGGATTGATTCG 310
consensus_15404#0 CACCGT------------------------------------------------------ 306
consensus_15404#3 ------------------------------------------------------------
consensus_15404#1 -------------------------GTATGTGAAGGCCAAGGAATGCACGGAGATTGTCT 299
consensus_15404#2 GTGTGGTTGTTTTGTTCGGTCAGGTGTATGTGAAGGCCAAGGAATGCACGGAGATTGTCT 370
consensus_15404#0 -------------------------GTATGTGAAGGCCAAGGAATGCACGGAGATTGTCT 341
consensus_15404#3 ---------------------------------------------------GNCCTGCCG 9
** *
consensus_15404#1 CCATGGAGGAATTCGCGGTGATTCTTGGAA-GGCATTTCACCTCGCTGTACCCGCAGGTC 358
consensus_15404#2 CCATGGAGGAATTCGCGGTGATTCTTGGAA-GGCATTTCACCTCGCTGTACCCGCAGGTC 429
consensus_15404#0 CCATGGAGGAATTCGCGGTGATTCTTGGAA-GGCATTTCACCTCGCTGTACCCGCAGGTC 400
consensus_15404#3 CC--CGATGACCACACGG-GACCATTGAAGCNACAGTGAGCCGCCCCA-AGTCAAAGTTG 65
** ** ** * *** ** *** * ** * ** * * * * ** *
consensus_15404#1 TCAGAGGCAACGGTGACCATCGCCGAGCGTCCATGGGAGCGTGTGGTTGTCGATGG-GAA 417
consensus_15404#2 TCAGAGGCAACGGTGACCATCGCCGAGCGTCCATGGGAGCGTGTGGTTGTCGATGG-GAA 488
consensus_15404#0 TCAGAGGCAACGGTGACCATCGCCGAGCGTCCATGGGAGCGTGTGGTTGTCGATGG-GAA 459
consensus_15404#3 TNAAAGCAATCAATGGTACTGGGGAAGCTCTCGGTCTGGTTTCTGAGGGAAAAAGAAGGA 125
* * ** * * ** * * *** * * * ** * * * * *
consensus_15404#1 GCCTCATTCCCACGGGTTCAAACTTGGTGTTGAG-AAGCACGTCACAGAGGTCATTGTGA 476
consensus_15404#2 GCCTCATTCCCACGGGTTCAAACTTGGTGTTGAG-AAGCACGTCACAGAGGTCATTGTGA 547
consensus_15404#0 GCCTCATTCCCACGGGTTCAAACTTGGTGTTGAG-AAGCACGTCACAGAGGTCATTGTGA 518
consensus_15404#3 ACTGTGTTACAATCACATGGGAAGGGGNAATAAATAAATAATGTTCAGAAATGAAT-TGT 184
* ** * * * * ** * * ** * **** * * * **
consensus_15404#1 AGAAGTCTGGAAACTTGCTCATAAATTCTGGAATCCAAGGATACTCCCTGCTAAAGACAA 536
consensus_15404#2 AGAAGTCTGGAAACTTGCTCATAAATTCTGGAATCCAAGGATACTCCCTGCTAAAGACAA 607
consensus_15404#0 AGAAGTCTGGAAACTTGCTCATAAATTCTGGAATCCAAGGATACTCCCTGCTAAAGACAA 578
consensus_15404#3 ACATGGCCNGCTA--TAGTTACGCCATTGTAAATCTTGTACTGCCTTATTGTATGGA-AC 241
* * * * * * * * * * **** * * * ** ** *
consensus_15404#1 CTCAGGTATTTTTGCCGGATGCTAACCTTTCACACTGGGGTTGCTTGGGTTCACTTGTAA 596
consensus_15404#2 CTCAGT--------CCGGGTTCGAAAAATTTGTGA-GGGATCGCTACACACTTCTTCCTG 658
consensus_15404#0 CTCAGT--------CCGGGTTCGAAAAATTTGTGA-GGGATCGCTACACACTTCTTCCTG 629
consensus_15404#3 CTCAAA---------CATGTGAGAAAAAGTNA-------ACGGCGTNATATATTTAAAAA 285
**** * * ** * ** *
consensus_15404#1 AGACA-GTTTATGTATTGTACTTTTGAACTAGGAATAAACTTGTAACAA--GTGCTACTA 653
consensus_15404#2 ATACAAGAGAAAGGATTGTAGCAACAGA--AGTAACTGCCTGGTGGAGGT-ATCCTTTTG 715
consensus_15404#0 ATACAAGAGAAAGGATTGTAGCAACAGA--AGTAACTGCCTGGTGGAGGT-ATCCTTTTG 686
consensus_15404#3 CGGAGGGAGTACCCACTTGNACATTTGA--AGGCTNAAGGTTATAAAATTTCTTCTCCTT 343
* * * * * ** * * * ** *
consensus_15404#1 CGCATGCTTGAAGGAATTAAATGCAAAAATGTGAGGTAAAGTGCTAGC--TGAAGTGTCA 711
consensus_15404#2 AGCATGTTTCCCAGATTCCATCAAAGTCATT----------------------------- 746
consensus_15404#0 AGCATGTTTCCCAGATTCCATCAAAGTCATTCTGCTTCACACAAAGGTATCAGGACGTAA 746
consensus_15404#3 TGTACTTNAAAAAAAACACAACCANACGCTANGN-------------------------- 377
* * * * *
consensus_15404#1 GAAAAGCA-----AAATAATTTAACTAGTTAACTTC-TGATGAAGTATAAA-----CGAA 760
consensus_15404#2 ------------------------------------------------------------
consensus_15404#0 AGAAAGTTCTTGCAGATACGTTCTTTGGTCCTCCTGATGTTGGAGTGTATAGTCCATCAG 806
consensus_15404#3 ------------------------------------------------------------
consensus_15404#1 GGAAATATAAATTTTAACAAA--ACCAGACTGCTTTTTGTCATACATATATGCTCAATTT 818
consensus_15404#2 ------------------------------------------------------------
consensus_15404#0 TGCAGAATACACTATACCTGATGGCTAAGGAAGTTCTCAACAGGTTCCCGGATATAGCAT 866
consensus_15404#3 ------------------------------------------------------------
consensus_15404#1 GTACT-AGTGCATGCTAACCTTTCACCACCTTGTCTCTCTCAGT---------------- 861
consensus_15404#2 ------------------------------------------------------------
consensus_15404#0 CTGTTCAGCTAAGGATGCCGAACCTCCACTTTATCCCTGTTAACTTAGGGAACAAAGAAA 926
consensus_15404#3 ------------------------------------------------------------
consensus_15404#1 ---CCGGGTTCGAAAAATTTGTGAGGGATCGCTACACACTTCTTCCTGATACAAGAGAAA 918
consensus_15404#2 ------------------------------------------------------------
consensus_15404#0 ATCCAGGATTAGTGAAGTTTGCTGATGATGTGTACCTGCCGACCGATGAACCACACGGGA 986
consensus_15404#3 ------------------------------------------------------------
consensus_15404#1 GGATTGTAGCAACAGAAGTAACTGCCTGGTGGAGGTCTGCTACTCTTCTTATATACCTGA 978
consensus_15404#2 ------------------------------------------------------------
consensus_15404#0 CCATTGAAGCAACAGTGAGCCGCCCCAAGTCAAAGTTGTAAAAGCAATCAATGGTACTGG 1046
consensus_15404#3 ------------------------------------------------------------
consensus_15404#1 GAAAAAGTCAACGGCGTCATATATTAAAAAACGGAGGGAGTACCAACTTGCACATTTGAA 1038
consensus_15404#2 ------------------------------------------------------------
consensus_15404#0 GGAAGCTCTCGGTCTGGTTTCTGAGGAAAAAAGAAGGAACTGTGTAACAATCACATGGGA 1106
consensus_15404#3 ------------------------------------------------------------
consensus_15404#1 GGCTAAAGGTTATAAATTTTCT-------------------------------------- 1060
consensus_15404#2 ------------------------------------------------------------
consensus_15404#0 AGGGGAAATAAATAAATAATGTTCAGAAATGAATTGTACATGGCCAGCTATAGTTACGCC 1166
consensus_15404#3 ------------------------------------------------------------
consensus_15404#1 ------------------------------------------------------------
consensus_15404#2 ------------------------------------------------------------
consensus_15404#0 ATTGTAAATCTTGTACTGCCTTATTGTATGGAACCTCAAATGTACAACCTCCGTTTTTTA 1226
consensus_15404#3 ------------------------------------------------------------
consensus_15404#1 ------------------------------------------------------------
consensus_15404#2 ------------------------------------------------------------
consensus_15404#0 ATAGATGACGCTTGACTTTTTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1286
consensus_15404#3 ------------------------------------------------------------
consensus_15404#1 ---
consensus_15404#2 ---
consensus_15404#0 AAA 1289
consensus_15404#3 ---
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||