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Oryza sativa
cluster # 15409 cluster # 15409       Sequences # 22       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_15409#0 length = 547 sequences # 19  
consensus_15409#1 length = 513 sequences # 2  
consensus_15409#2 length = 435 sequences # 1  

consensusID : consensus_15409#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 19
consensus length = 547
fasta sequence
                              [CATCGATCTTAATTTCTCTCTTCATCATCTCGCTATATACGTGCAATGGCGGTGGCGCAGGTGAGCAGGACGGCCGTGGTGGCGCTGGTCCTCGTCGCCGTGGTGGTGGCGGCGGCGTACGTGCCGGCGGCGACCGCGTACGGCTGCTTCGACGACTGCTACGAGCGCTGCGCCAACGGGAAGACGGACGACGCCTGC-AACTCCATGTGCAAGCAGGCTTGCAGCGGCGCCGGCGG-GGCCCCGCCG-A-GGCGCCCGACG-AGGCTTGATCGCCGACGACGAGCGCCGCC-GCGCCGCCGTCCATCGATCTCCAT-ATCCGCCCGTAGCCGCCGGCTATATATAC-ACTCGATTATTTGTTTG-TTTGTTGTT-AATTCAAGTTTGATTGATTTAACCGTCGAGTATCT-AAATTA-GTTTG-TTTTG-TTT-GTTT-AATTTATGCAAGC-TGGTGTACTCTCTCAGCGATTTGTAATTCTTGTGTGATAATTAAGTGAATTTGTTCCCTTGTTTCTTCTTTGATTAATTAATTACCGAGATGCCTTGCAAAAAAAAAAAA]

[+] EMBL AK120793             [CATCGATCTTAATTTCTCTCTTCATCATCTCGCTATATACGTGCAATGGCGGTGGCGCAGGTGAGCAGGACGGCCGTGGTGGCGCTGGTCCTCGTCGCCGTGGTGGTGGCGGCGGCGTACGTGCCGGCGGCGACCGCGTACGGCTGCTTCGACGACTGCTACGAGCGCTGCGCCAGCGGGAAGACGGACGACGCCTGC AACTCCATGTGCAAGCAGGCTTGCAGCGGCGCCGGCGGCGGCCCCGCCG A GGCGCCCGACG AGGCTTGATCGCCGACGACGAGCGCCGCC GCGCCGCCGTCCATCGATCTCCAT ATCCGCCCGTAGCCGCCGGCTATATATAC ACTCGATTATTTGTTTG TTTGTTGTT AATTCAAGTTTGATTGATTTAACCGTCGAGTATCT AAATTA GTTTG TTTTG TTT GTTT AATTTATGCAAGC TGGTGTACTCTCTCAGCGATTTGTAATTCTTGTGTGATAATTAAGTGAATTTGTT                                                       ]
[+] EMBL C74628               [           ATTTCTCTCTTCATCATCTCGCTATATACGTGCAATGGCGGTGGCGCAGGTGAGCAGGACGGCCGTGGTGGCGCTGGTCCTCGTCGCCGTGGTGGTGGCGGCGGCGTACGTGCCGGCGGCGACCGCGTACGGCTGCTTCGACGACTGCTACGAGCGCTGCGCCAACGGGAAGACGGACGACGCCTGC AACTCCATGTGCAAGCAGGCTTNCAGCGGCGCCGGCGG GGCCCCG CG A GGCG CCGACG AGGCTTGATCGCCGACGACGAGCGCCGCC G GCCGNCGTNCATCGATCTTCAT ATCCG CCGTAGCCGCC GNTATATATAC ACTCGATTATTTGTTTG  TTGTTGTT AA TCAAG TTGATTGATTTAACC TCGAGTATTT AAA TA GTTTG TTTTG TTT G TT AA TTATG AAAN TGGTGTACT TTTAAG GA TTNTAA TCTTGTGT                                                                           ]
[+] EMBL C73262               [            TTTCTCTCTTCATCATCTCGCTATATACGTGCAATGGCGGTGGCGCAGGTNAGCAGGACGGCCGTGGTGGCGCTGGTCCTCGTCGCCGTGGTGGTGGCGGCGGCGTACGTNCCGGCGGCGACCGCNTACGGCTGCTTCGACGACTGCTACGAGCGCTGCGCCAACGGGAAGACGGACGACGCCTGCAAACTCCATGTGCAAGCAGGCTTGCAGCGGCGCCGGCGG GGCCCCGCCGAA GGCGCCCGACG AGGCTTGATCGCCGACGACGAGCGCCGCC GCGCCGCCGTCCATCGATCTCCAT ATCCGCCCGTAGCCGCCGGCTATATATAC ACTCGATTATTTGTTTG TTTGTTGTTAAATTCAAGTTTGATTGATTTAACCGTCGAGTATCTAAAATAA GTTTG TTTTGTTTT GTTT AANTTATGNAAGC Tt                                                                                                            ]
[+] EMBL AU064816             [                   CTTCATCATCTCGCTATATACGTGCAATGGCGGTGGCGCAGGTGAGCAGGACGGCCGTGGTGGCGCTGGTCCTCGTCGCCGTGGTGGTGGCGGCGGCGTACGTGCCGGCGGCGACCGCGTACGGCTGCTTCGACGACTGCTACGAGCGCTGCGCCAACGGGAAGACGGACGACGCCTGC AACTCCATGTGCAAGCAGGCTTGCAGCGGCGCCGGCGG GGCCCCGCGA A GGCGCCCGACG AGGCTTGATCGCCGACGACGAGCGCCGCC GNGCCGCCGTCCATCGATCTTCAT ATCCG CCGTAGCCGCCGGCTATATATAC ANTCGATTATTTGTTTG TTTGTTGTT AATTCAAG                                                                                                                                                                                    ]
[+] EMBL AU064814             [                   CTTCATCATCTCGCTATATACGTGCAATGGCGGTGGCGCAGGTGAGCAGGACGGCCGTGGTGGCGCTGGTCCTCGTCGCCGTGGTGGTGGCGGCGGCGTACGTGCCGGCGGCGACCGCGTACGGCTGCTTCGACGACTGCTACGAGCGCTGCGCCAACGGGAAGACGGACGACGCCTGC AACTCCATGTGCAAGCAGGCTTGCAGCGGCGCCGGCGG GGCCCCGCCG A GGCG CCGACG AGGCTTGATCGCCGACGACGAGCGCCGCC GGGCCGCCGTNCATCGATCTTCATAATCNGCCCGTAGCCGCCGGTTATATATAC AATCGATTAATTGTTTG TTTNTTGTT AAATC                                                                                                                                                                                       ]
[+] EMBL AU070058             [                   CTTCATCATCTCGCTATATACGTGCAATGGCGGTGGCGCAGGTGAGCAGGACGGCCGTGGTGGCGCTGGTCCTCGTCGCCGTGGTGGTGGCGGCGGCGTACGTGCCGGCGGCGACCGCGTACGGCTGCTTCGACGACTGCTACGAGCGCTGCGCCAACGGGAAGACGGACGACGCCTGC AACTCCATGTGCAAGCAGGCTTGCAGCGGCGCCGGCGG GGCCCCG CA A GGCGCCCGACG AGGCTTGATCGCCGACGACGAGCGCCGNC G GNCGCCGTCCATCGATCTCCAT ATCCGNCCGTAGCCGCCGGCTATATATAC ACTCGATTATTTGTTTG TTTGTTGTT AATTCAAGTTTNATTGATTTAANCGTCGAGTATCT AAATTA GTTTG TTTTG TTT G TT AA TTATGCAAG  TGGTGTACTCT TCAGCGATTgt                                                                                       ]
[+] EMBL AU064645             [                   CTTCATCATCTCGCTATATACGTGCAATGGCGGTGGCGCAGGTGAGCAGGACGGCCGTGGTGGCGCTGGTCCTCGTCGCCGTGGTGGTGGCGGCGGCGTACGTGCCGGCGGCGACCGCGTACGGCTGCTTCGACGACTGCTACGAGCGCTGCGCCAACGGGAAGACGGACGACGCCTGC AACTCCATGTGCAAGCAGGCTTGCAGCGGCGCCGGCGG GGCCCCGCGA A GGCGCCCGACG AGGCTTGATCGCCGACGACGAGCGCCGCC G GNCGCCGTCCATCGATCTTCAT ATCCGCCCGTAGCCGCC GCTATATATAC ACTCGATTATTTGTTTG TTTGTTGTTAAATTCAAGTTTGATTGATTTAACCGTCGAGTATCTNAAATAA GTTTG TTTTG TTT GTTT AATTTATGCAAAG TTGTGTACTCTTTAAG                                                                                              ]
[+] EMBL AU183810             [                   CTTCATCATCTCGCTATATACGTGCAATGGCGGTGGCGCAGGTGAGCAGGACGGCCGTGGTGGCGCTGGTCCTCGTCGCCGTGGTGGTGGCGGCGGCGTACGTGCCGGCGGCGACCGCGTACGGCTGCTTCGACGACTGCTACGAGCGCTGCGCCAACGGGAAGACGGACGACGCCTGC AACTCCATGTGCAAGCAGGCTTGCAGCGGCGCCGGCGGCGGCCCCGCCG A GGCGCCCGACG AGGCTTGATCGCCGACGACGAGCGCCGCC GCGCCGCCGTCCATCGATCTCCAT ATCCGCCCGTAGCCGCCGGCTATATATAC ACTCGATTATTTGTTTG TTTGTTGTT AATTCAAGTTTGATTGATTTAACCGTCGAGTATCT AAATTA GTTTG TTTTG TTT GTTT AATTTATGCAAGC TGGTGTACTCTCTCA                                                                                               ]
[+] EMBL AU064615             [                   CTTCATCATCTCGCTATATACGTGCAATGGCGGTGGCGCAGGTGAGCAGGACGGCCGTGGTGGCGCTGGTCCTCGTCGCCGTGGTGGTGGCGGCGGCGTACGTGCCGGCGGCGACCGCGTACGGCTGCTTCGACGACTGCTACGAGCGCTGCGCCAACGGGAAGACGGACGACGCCTGC AACTCCATGTGCAAGCAGGCTTNCAGCGGCGCCGGCGG GGCCCCGCGA A GGCGCCCGACG AGGCTTGATCGCCGACGACGAGCGCCGCC GCGCCGCCGTCCATCGATCTTCAT ATCCG CCGTAGCCGCCGGNTATATATACAATTCGATTATTTGTTTG TTTGTTGTT AATTCAAGTTTGATTGATTTAACCCTCGAGTATCT AAATAA GTTTG TTTTG TTT GTTn                                                                                                                             ]
[+] EMBL AU165707             [                    TTCATCATCTCGCTATATACGTGCAATGGCGGTGGCGCAGGTGAGCAGGACGGCCGTGGTGGCGCTGGTCCTCGTCGCCGTGGTGGTGGCGGCGGCGTACGTGCCGGCGGCGACCGCGTACGGCTGCTTCGACGACTGCTACGAGCGCTGCGCCAACGGGAAGACGGACGACGCCTGC AACTCCATGTGCAAGCAGGCTTGCAGCGGCGCCGGCGGCGGCCCCGCCG A GGCGCCCGACG AGGCTTGATCGCCGACGACGAGCGCCGCC GCGCCGCCGTCCATCGATCTCCAT ATCCGCCCGTAGCCGCCGGCTATATATAC ACTCGATTATTTGTTTG TTTGTTGTT AATTCAAGTTTGATTGATTTAACCGTCGAGTATCT AAATTA GTTTG TTTTG TTT GTTT AATTTATGCAAGC TGGTGTACTCTCTCAGCGATTTGTAATTCTTGTGTGATAATTAAGTGAATTTGTTCCCTTGTTTCTTCTTTGATTAATTAATTACCGAGATGCCTTGCAAAAGAAAAA  ]
[+] EMBL C73499               [                        TCATCTCGCTATATACGTGCAATGGCGGTGGCGCAGGTGAGCAGGACGGCCGTGGTGGCGCTGGTCCTCGTCGCCGTGGTGGTGGCGGCGGCGTACGTGCCGGCGGCGACCGCGTACGGCTGCTTCGACGACTGCTACGAGCGCTGCGCCAACGGGAAGACGGACGACGCCTGC AACTCCATGTGCAAGCAGGCTTGCAGCNGNGCCGNCGG GGCCCCG CG ANGGCGCCCGACG AGGCTTGATCGCCG                                                                                                                                                                                                                                                                                               ]
[+] EMBL AU094332             [                         CATCTCGCTATATACGTGCAATGCCGGTGGCGCAGGTGAGCAGGACGGCCGTGGTGGCGCTGGTCCTCGTCGCCGTGGTGGT GCGNCGGCGTACGTGCCGGCGGCGACCGCGTACGGCTGCTTCGACGACTGCTACGAGCGCTGCGCCAACGGGAAGACGGACGACGCCTGC AACTCCATGTGCAAGCAGGCTTGCAGCGGCGCCGGCGGCGGCCCCGCCG A GGCGCCCGACG AGGCTTGATCGCCGACGACGAGCGCCGCC GCGCCGCCGTCCATCGATCTCCAT ATCCGCCCGTAGCCGCCGGCTATATATAC ACTCGATTATTTGTTTG TTTGTTGTT AATTCAAGTTTGATTGATTTAACCGTCGAGTATCT AAATTA GTTTG TTTTG TTT GTTT AATTTATGCAAGC TGGTGTACTCTCTCAGCGATTTGTAATTCTTGTGTGATAATTAAGTGAATTTGTTCCCTTGTTTCTTCTTTGATTAAaaaaa                            ]
[+] EMBL C73218               [                          ATCTCGCTATATACGTGCAATGGCGGTGGCGCAGGTGAGCAGGACGGCCGTGGTGGCGCTGGTCCTCGTCGCCGTGGTGGTGGCGGCGGCGTACGTNCCGGCGGCGACCGCNTACGGCTGCTTCGACGACTGCTACGAGCGCTGCGCCAACGGGAAGACGGACGACGCCTGC AACTCCATGTGCAAGCAGGCTTGCAGCGGCGCCGGCGG GGCCCCG CG ANGGCGCCCGACG AGGCTTGATCGCCGACGACGAGCGCCGCC GNGCCGCCGTCCATCGATCTCCAT ATCCGCCCGTANACGCCGGCTATATATAC ACTCGATTATTTGTTTGTTTTGTTGTT AATTCAAGTTTGATTGATTTAACCGTCGAGTATCT AAATNAGGTTTGTTTTTG TTTGGTTTAAATTTATGCAAACTTGGTGTACTCTTTCAGCGATTTt                                                                                       ]
[+] EMBL C99095               [                            CTCGCTATATACGTGCAATGGCGGTGGCGCAGGTGAGCAGGACGGCCGTGGTGGCGCTGGTCCTCGTCGCCGTGGTGGTGGCGGCGGCGTACGTGCCGGCGGCGACCGCGTACGGCTGCTTCGACGACTGCTACGAGCGCTGCGCCAACGGGAAGACGGACGACGCCTGC AACTCCATGTGCAAGCAGGCTTGCAGCGGCGCCGGCGG GGCCCCGCCG A GGCGCCCGACG AGGCTTGATCGCCGACGACGAGCGCCGCC GCNCCGCCGTCCATCGATCTCCAT ATCCGCCCGTAGCCGCCGGCTATATATAC ACTCGATTATTTGTTTG TTTGTTGTT AATTCAA NTTGATTGATTTAACCGTCGAGTATCT AAATTA GTTTG TTTTG TTT GTTT AATTTATGCAA C TGGGGGACTCTCTCAGCGAT                                                                                          ]
[+] EMBL AU182878             [                                                                                                                        GTGCCGGCGGCGACCGCGTACGGCTGCTTCGACGACTGCTACGAGCGCTGCGCCAACGGGAAGACGGACGACGCCTGC AACTCCATGTGCAAGCAGGCTTGCAGCGGCGCCGGCGGCGGCCCCGCCG A GGCGCCCGACGAAGGCTTGATCGCCGACGACGAGCGCCGCCGGCGCCCCCGTCCATCGATCTCCAT ATCCGCCCGTAGCCGCCGGCTATATATAC ACTCGATTATTTGTTTG TTTGTTGTT AATTCAAGTTTGATTGATTTAACCGTCGAGTATCT AAATTA GTTTG TTTTG TTT GTTT AATTTATGCAAGC TGGTGTACTCTCTCAGCGATTTGTAATTCTTGTGTGATAATTAAGTGAATTTGTTCCCTTGTTTCTTCTTTGATTAATTAATTACCGAGATGCCTTGCAAAAAAAAAAAA]
[+] EMBL AU183811             [                                                                                                                        GTGCCGGCGGCGACCGCGTACGGCTGCTTCGACGACTGCTACGAGCGCTGCGCCAACGGGAAGACGGACGACGCCTGC AACTCCATGTGCAAGCAGGCTTGCAGCGGCGCCGGCGGCGGCCCCGCCG A GGCGCCCGACGAAGGCTTGATCGCCGACGACGAGCGCCGCCGGCGCCCCCGTCCATCGATCTCCAT ATCCGCCCGTAGCCGCCGGCTATATATAC ACTCGATTATTTGTTTG TTTGTTGTT AATTCAAGTTTGATTGATTTAACCGTCGAGTATCT AAATTA GTTTG TTTTG TTT GTTT AATTTATGCAAGC TGGTGTACTCTCTCAGCGATTTGTAATTCTTGTGTGATAATTAAGTGAATTTGTTCCCTTGTTTCTTCTTTGATTAATTAATTACCGAGATGCCTTGCAAAAAAAAAAAA]
[+] EMBL AU182888             [                                                                                                                          GCCGGCGGCGACCGCGTACGGCTGCTTCGACGACTGCTACGAGCGCTGCGCCAACGGGAAGACGGACGACGCCTGC AACTCCATGTGCAAGCAGGCTTGCAGCGGCGCCGGCGGCGGCCCCGCCG A GGCGCCCGACGAAGGCTTGATCGCCGACGACGAGCGCCGCCGGCGCCCCCGTCCATCGATCTCCAT ATCCGCCCGTAGCCGCCGGCTATATATAC ACTCGATTATTTGTTTG TTTGTTGTT AATTCAAGTTTGATTGATTTAACCGTCGAGTATCT AAATTA GTTTG TTTTG TTT GTTT AATTTATGCAAGC TGGTGTACTCTCTCAGCGATTTGTAATTCTTGTGTGATAATTAAGTGAATTTGTTCCCTTGTTTCTTCTTTGATTAATTAATTACCGAGATGCCTTGCAAAAAAAAAAAA]
[+] EMBL AU182967             [                                                                                                                               CGGCGACCGCGTACGGCTGCTTCGACGACTGCTACGAGCGCTGCGCCAACGGGAAGACGGACGACGCCTGC AACTCCATGTGCAAGCAGGCTTGCAGCGGCGCCGGCGGCGGCCCCGCCG A GGCGCCCGACGAAGGCTTGATCGCCGACGACGAGCGCCGCC GCGCCCCCGTCCATCGATCTCCAT ATCCGCCCGTAGCCGCCGGCTATATATAC ACTCGATTATTTGTTTG TTTGTTGTT AATTCAAGTTTGATTGATTTAACCGTCGAGTATCT AAATTA GTTTG TTTTG TTT GTTT AATTTATGCAAGC TGGTGTACTCTCTCAGCGATTTGTAATTCTTGTGTGATAATTAAGTGAATTTGTTCCCTTGTTTCTTCTTTGATTAATTAATTACCGAGATGCCTTGCAAAAAAAAAAAA]
[+] EMBL AU182884             [                                                                                                                               CGGCGACCGCGTACGGCTGCTTCGACGACTGCTACGAGCGCTGCGCCAACGGGAAGACGGACGACGCCTGC AACTCCATGTGCAAGCAGGCTTGCAGCGGCGCCGGCGGCGGCCCCGCCG A GGCGCCCGACGAAGGCTTGATCGCCGACGACGAGCGCCGCC GCGCCCCCGTCCATCGATCTCCAT ATCCGCCCGTAGCCGCCGGCTATATATAC ACTCGATTATTTGTTTG TTTGTTGTT AATTCAAGTTTGATTGATTTAACCGTCGAGTATCT AAATTA GTTTG TTTTG TTT GTTT AATTTATGCAAGC TGGTGTACTCTCTCAGCGATTTGTAATTCTTGTGTGATAATTAAGTGAATTTGTTCCCTTGTTTCTTCTTTGATTAATTAATTACCGAGATGCCTTGCAAAAAAAAAAAA]


>consensus_15409#0 CATCGATCTTAATTTCTCTCTTCATCATCTCGCTATATACGTGCAATGGCGGTGGCGCAG GTGAGCAGGACGGCCGTGGTGGCGCTGGTCCTCGTCGCCGTGGTGGTGGCGGCGGCGTAC GTGCCGGCGGCGACCGCGTACGGCTGCTTCGACGACTGCTACGAGCGCTGCGCCAACGGG AAGACGGACGACGCCTGCAACTCCATGTGCAAGCAGGCTTGCAGCGGCGCCGGCGGGGCC CCGCCGAGGCGCCCGACGAGGCTTGATCGCCGACGACGAGCGCCGCCGCGCCGCCGTCCA TCGATCTCCATATCCGCCCGTAGCCGCCGGCTATATATACACTCGATTATTTGTTTGTTT GTTGTTAATTCAAGTTTGATTGATTTAACCGTCGAGTATCTAAATTAGTTTGTTTTGTTT GTTTAATTTATGCAAGCTGGTGTACTCTCTCAGCGATTTGTAATTCTTGTGTGATAATTA AGTGAATTTGTTCCCTTGTTTCTTCTTTGATTAATTAATTACCGAGATGCCTTGCAAAAA AAAAAAA



consensusID : consensus_15409#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 513
fasta sequence
                              [TTTCTCTCTTCATCATCTCGCTATATACGTGCAATGCCGGTGGCNCAGGTGAGCAGGACGGCCGTGGTGGCGCTGGTCCTCGTCNCCGTGGTGGTGCCGNCGGCGTACGTGCCGGCGGCGACCGCGTACGGCTGCTTCG-ACG-ACTGCTACGAGCGCTGCGCCAACGGGAAGACGGACGACGCCTGCAACTCCATGTGCAAGCAGGCTTGCAGCGGCGCCGGCGGCGGCCCCGCCNAGGCGCCCGACGAGGCTTGATCGCCGACGACGAGCGCCGCCGCGCCGCCGTCCATCGATCTCCATATCCGCCCGTAGCCGCCGGCTATATATACNCTCGATTATTTGTTTGTTTGTTGTTAATTCAAGTTTGATTGATTTAACCGTCGAGTATCTAAATTAGTTTGTTTTGTTTGTTTAATTTATGCAAGCTGGTGTACTCTCTCAGCGATTTGTAATTCTTGTGTGATAATTAAGTGAATTTGTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU094180             [TTTCTCTCTTCATCATCTCGCTATATACGTGCAATGCCGGTGGCNCAGGTGAGCAGGACGGCCGTGGTGGCGCTGGTCCTCGTCNCCGTGGTGGTGCCGNCGGCGTACGTGCCGGCGGCGACCGCGTACGGCTGCTTCG ACG ACTGCTACGAGCGCTGCGCCAACGGGAAGACGGACGACGCCTGCAACTCCATGTGCAAGCAGGCTTGCAGCGGCGCCGGCGGCGGCCCCGCCNAGGCGCCCGACGAGGCTTGATCGCCGACGACGAGCGCCGCCGCGCCGCCGTCCATCGATCTCCATATCCGCCCGTAGCCGCCGGCTATATATACNCTCGATTATTTGTTTGTTTGTTGTTAATTCAAGTTTGATTGATTTAACCGTCGAGTATCTAAATTAGTTTGTTTTGTTTGTTTAATTTATGCAAGCTGGTGTACTCTCTCAGCGATTTGTAATTCTTGTGTGATAATTAAGTGAATTTGTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL C99096               [                                                                                                                CGGCGGCGACCGCGTACGGCTGCTTCGAACGAACTNCTACGAGCCNTGCGCCAACGGGAAGACGGACGACGCCTGCAACTCCATGTGCAAGCAGGCTTGCAGCGGCGCCGGCGGCGGCCCCGCCGAGGCGCCCGACGAGGCTTGATCGCCGACGACGAGCGCCGCCGCGCCGCCGTCCATCGATCTCCATATCCGCCCGTAGCCGCCGGCTATATATACACTCGATTATTTGTTTGTTTGTTGTTAATTCAAGTTTGATTGATTTAACCGTCGNGTATCTAAATTAGTTTGTTTTGTTTGTTTAATTTATGCAAGCTGGTGTACTCTCTCAGCGATTTGTAATTCTTGTGTNATAATTAAGTGAATTTGTTCAAAAAAAAAAAAAAAAAAAAAAAA       ]


>consensus_15409#1 TTTCTCTCTTCATCATCTCGCTATATACGTGCAATGCCGGTGGCNCAGGTGAGCAGGACG GCCGTGGTGGCGCTGGTCCTCGTCNCCGTGGTGGTGCCGNCGGCGTACGTGCCGGCGGCG ACCGCGTACGGCTGCTTCGACGACTGCTACGAGCGCTGCGCCAACGGGAAGACGGACGAC GCCTGCAACTCCATGTGCAAGCAGGCTTGCAGCGGCGCCGGCGGCGGCCCCGCCNAGGCG CCCGACGAGGCTTGATCGCCGACGACGAGCGCCGCCGCGCCGCCGTCCATCGATCTCCAT ATCCGCCCGTAGCCGCCGGCTATATATACNCTCGATTATTTGTTTGTTTGTTGTTAATTC AAGTTTGATTGATTTAACCGTCGAGTATCTAAATTAGTTTGTTTTGTTTGTTTAATTTAT GCAAGCTGGTGTACTCTCTCAGCGATTTGTAATTCTTGTGTGATAATTAAGTGAATTTGT TCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA



consensusID : consensus_15409#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 435
fasta sequence
                              [CTTCATCATCTCGCTATATACGTGCAATGGCGGTGGCGCAGGTGAGCAGGACGGCCGTGGTGGCGCTGGTCCTCGTCGCCGTGGTGGTGGCGGCGGCGTACGTGCCGGCGNGACCGCGTACGGCTGCTTCGACGACTGCTACGAGCGCTGCGCCAACGGGAAGACGGACGACGCCTGCAACTCCATGTGCAAGCAGGCTTCAGCGGCGCCGGCNGGCCCACGCCATGGCGCGAACCGAGGCTTTGATCGNCGACGACGAGCGCGCGCGCCGCCCGTCCATCGATCTNCATATCCGCCCGTAGCCGCCGNTATTATATACACTCGATTATTTGTTTGTTTGTTGTTAATTCAAGTTTGATTGATTTTACCNTCGAGTATCTAAATTAAGTTTGGTTTTGTTTGTTAATTTATGCAAGCTTGGGTACTTTNTAAGGA]

[+] EMBL AU064180             [CTTCATCATCTCGCTATATACGTGCAATGGCGGTGGCGCAGGTGAGCAGGACGGCCGTGGTGGCGCTGGTCCTCGTCGCCGTGGTGGTGGCGGCGGCGTACGTGCCGGCGNGACCGCGTACGGCTGCTTCGACGACTGCTACGAGCGCTGCGCCAACGGGAAGACGGACGACGCCTGCAACTCCATGTGCAAGCAGGCTTCAGCGGCGCCGGCNGGCCCACGCCATGGCGCGAACCGAGGCTTTGATCGNCGACGACGAGCGCGCGCGCCGCCCGTCCATCGATCTNCATATCCGCCCGTAGCCGCCGNTATTATATACACTCGATTATTTGTTTGTTTGTTGTTAATTCAAGTTTGATTGATTTTACCNTCGAGTATCTAAATTAAGTTTGGTTTTGTTTGTTAATTTATGCAAGCTTGGGTACTTTNTAAGGA]


>consensus_15409#2 CTTCATCATCTCGCTATATACGTGCAATGGCGGTGGCGCAGGTGAGCAGGACGGCCGTGG TGGCGCTGGTCCTCGTCGCCGTGGTGGTGGCGGCGGCGTACGTGCCGGCGNGACCGCGTA CGGCTGCTTCGACGACTGCTACGAGCGCTGCGCCAACGGGAAGACGGACGACGCCTGCAA CTCCATGTGCAAGCAGGCTTCAGCGGCGCCGGCNGGCCCACGCCATGGCGCGAACCGAGG CTTTGATCGNCGACGACGAGCGCGCGCGCCGCCCGTCCATCGATCTNCATATCCGCCCGT AGCCGCCGNTATTATATACACTCGATTATTTGTTTGTTTGTTGTTAATTCAAGTTTGATT GATTTTACCNTCGAGTATCTAAATTAAGTTTGGTTTTGTTTGTTAATTTATGCAAGCTTG GGTACTTTNTAAGGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15409#0      CATCGATCTTAATTTCTCTCTTCATCATCTCGCTATATACGTGCAATGGCGGTGGCGCAG 60
consensus_15409#2      -------------------CTTCATCATCTCGCTATATACGTGCAATGGCGGTGGCGCAG 41
consensus_15409#1      ------------TTTCTCTCTTCATCATCTCGCTATATACGTGCAATGCCGGTGGCNCAG 48
                                          ***************************** ******* ***

consensus_15409#0      GTGAGCAGGACGGCCGTGGTGGCGCTGGTCCTCGTCGCCGTGGTGGTGGCGGCGGCGTAC 120
consensus_15409#2      GTGAGCAGGACGGCCGTGGTGGCGCTGGTCCTCGTCGCCGTGGTGGTGGCGGCGGCGTAC 101
consensus_15409#1      GTGAGCAGGACGGCCGTGGTGGCGCTGGTCCTCGTCNCCGTGGTGGTGCCGNCGGCGTAC 108
                       ************************************ *********** ** ********

consensus_15409#0      GTGCCGGCGGCGACCGCGTACGGCTGCTTCGACGACTGCTACGAGCGCTGCGCCAACGGG 180
consensus_15409#2      GTGCCGGCGN-GACCGCGTACGGCTGCTTCGACGACTGCTACGAGCGCTGCGCCAACGGG 160
consensus_15409#1      GTGCCGGCGGCGACCGCGTACGGCTGCTTCGACGACTGCTACGAGCGCTGCGCCAACGGG 168
                       *********  *************************************************

consensus_15409#0      AAGACGGACGACGCCTGCAACTCCATGTGCAAGCAGGCTTGCAGCGGCGCCGGCGG-GGC 239
consensus_15409#2      AAGACGGACGACGCCTGCAACTCCATGTGCAAGCAGGCTT-CAGCGGCGCCGGCNG-GCC 218
consensus_15409#1      AAGACGGACGACGCCTGCAACTCCATGTGCAAGCAGGCTTGCAGCGGCGCCGGCGGCGGC 228
                       **************************************** ************* * * *

consensus_15409#0      CCCGCCGAGGCGCCCGACGAGGCTT-GATCGCCGACGACGAGCGCCGCCGCGCCGCC-GT 297
consensus_15409#2      CACGCCATGGCGCGAACCGAGGCTTTGATCGNCGACGACGAGCGC--GCGCGCCGCCCGT 276
consensus_15409#1      CCCGCCNAGGCGCCCGACGAGGCTT-GATCGCCGACGACGAGCGCCGCCGCGCCGCC-GT 286
                       * ****  *****    ******** ***** *************   ********* **

consensus_15409#0      CCATCGATCTCCATATCCGCCCGTAGCCGCCGGCTATATATACACTCGATTATTTGTTTG 357
consensus_15409#2      CCATCGATCTNCATATCCGCCCGTAGCCGCCGNTATTATATACACTCGATTATTTGTTTG 336
consensus_15409#1      CCATCGATCTCCATATCCGCCCGTAGCCGCCGGCTATATATACNCTCGATTATTTGTTTG 346
                       ********** *********************    ******* ****************

consensus_15409#0      TTTGTTGTTAATTCAAGTTTGATTGATTTAACCGTCGAGTATCTAAATTAGTTT--GTTT 415
consensus_15409#2      TTTGTTGTTAATTCAAGTTTGATTGATTTTACCNTCGAGTATCTAAATTAAGTTTGGTTT 396
consensus_15409#1      TTTGTTGTTAATTCAAGTTTGATTGATTTAACCGTCGAGTATCTAAATTAGTTT--GTTT 404
                       ***************************** *** ****************  **  ****

consensus_15409#0      TGTTTGTTTAATTTATGCAAGCTGGTGTACTCTCTCAGCGATTTGTAATTCTTGTGTGAT 475
consensus_15409#2      TGTTTGTT-AATTTATGCAAGCTTGGGTACTTTNTAAGGA-------------------- 435
consensus_15409#1      TGTTTGTTTAATTTATGCAAGCTGGTGTACTCTCTCAGCGATTTGTAATTCTTGTGTGAT 464
                       ******** ************** * ***** * * **                      

consensus_15409#0      AATTAAGTGAATTTGTTCCCTTGTTTCTTCTTTGATTAATTAATTACCGAGATGCCTTGC 535
consensus_15409#2      ------------------------------------------------------------
consensus_15409#1      AATTAAGTGAATTTGTTCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA----------- 513
                                                                                   

consensus_15409#0      AAAAAAAAAAAA 547
consensus_15409#2      ------------
consensus_15409#1      ------------
                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)