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Oryza sativa
cluster # 15411 cluster # 15411       Sequences # 22       consensus # 5


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_15411#0 length = 699 sequences # 4  
consensus_15411#1 length = 697 sequences # 15  
consensus_15411#2 length = 440 sequences # 1  
consensus_15411#3 length = 302 sequences # 1  
consensus_15411#4 length = 257 sequences # 1  

consensusID : consensus_15411#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 699
fasta sequence
                              [GCTAATATGTTGTTCGGATCTGAACGCCTATATATACAGATGCTCTCCTGGGCTTTGGCCATAACCACAAACACAAAGCGTAAAGCCATCTACTAGTACCAAGTAGAGGAAATAGCTCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTCTCTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTGCAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGCTCTACACCTGCGACGACATCGTCAAGAAATGCGACCCTGTCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTGAAGATGTTCAAGTGCACCGACACCTTCCTCGGCATGTGCGGCCCTCCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAGCCGTTGTCTGAGTGAAGGACCANATAANAATAATGAAGCTAGAAGGTGTTTGCAAAANNNANNNNNNNNNNNNANNNNNNNNNNNNNNNNNNANNAANNNNAAAAAAAAAACT]

[+] EMBL CF277525             [GCTAATATGTTGTTCGGATCTGAACGCCTATATATACAGATGCTCTCCTGGGCTTTGGCCATAACCACAAACACAAAGCGTAAAGCCATCTACTAGTACCAAGTAGAGGAAATAGCTCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTCTCTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTGCAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGCTCTACACCTGCGACGACATCGTCAAGAAATGCGACCCTGTCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTGAAGATGTTCAAGTGCACCGACACCTTCCTCGGCATGTGCGGCCCTCCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATAC                                                                                                                                    ]
[+] EMBL AU093445             [                                                                                     CCATCTACTAGTACCAAGTAGAGGAAATAGCTCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTCTCTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTGCAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGCTCTACACCTGCGACGACATCGTCAAGAAATGCGACCCTGTCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTGAAGATGTTCAAGTGCACCGACACCTTCCTCGGCATGTGCGGCCCTCCCTGCAAGCACTGATCGATCGATCGATCGATGAT                                                                                                                                                                                                                                       ]
[+] EMBL CA758721             [                                                                                           ACTAGTACCAAGTAGAGGAAATAGCTCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTCTCTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTGCAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGCTCTACACCTGCGACGACATCGTCAAGAAATGCGACCCTGTCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTGAAGATGTTCAAGTGCACCGACACCTTCCTCGGCATGTGCGGCCCTCCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAGCCGTTGTCTGAGTGAAGGACCANATAANAATAATGAAGCTAGAAGGTGTTTGCAAAANNNANNNNNNNNNNNNANNNNNNNNNNNNNNNNNNANNAANNNNAAAAAAAAAACT]
[+] EMBL OS1321836            [                                                                                                    AAGTAGAGGAAATAGCTCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTCTCTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTGCAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGCTCTACACCTGCGACGACATCGTCAAGAAATGCGACCCTGTCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTGAGGATGTTCAAGTGCACCGACACCTTCCTCGGg                                                                                                                                                                                                                                                                                      ]


>consensus_15411#0 GCTAATATGTTGTTCGGATCTGAACGCCTATATATACAGATGCTCTCCTGGGCTTTGGCC ATAACCACAAACACAAAGCGTAAAGCCATCTACTAGTACCAAGTAGAGGAAATAGCTCAA GGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTCTCTTGGTGATCCTGGCTGT CCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTGCAAAAGAAAATGCCGTGGGTGA GAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTCTC CTTCTCGGGGCTCTACACCTGCGACGACATCGTCAAGAAATGCGACCCTGTCTGCAAGAA ATGCGCCGTCGTCAAGACCTACCCTGTGAAGATGTTCAAGTGCACCGACACCTTCCTCGG CATGTGCGGCCCTCCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAAT GCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATT ATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAGCCGTTGTCTGAGTG AAGGACCANATAANAATAATGAAGCTAGAAGGTGTTTGCAAAANNNANNNNNNNNNNNNA NNNNNNNNNNNNNNNNNNANNAANNNNAAAAAAAAAACT



consensusID : consensus_15411#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 15
consensus length = 697
fasta sequence
                              [ATGGACTGAAGGGAGTAGAAAAACCACAAACACAAAGCGTAAAGCCATCTACTAGTACCAAGTAGAGGAAATAGCTCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTCTCTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTG-CAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGCTCTACACCTGCGACGACATCGTCAAGAAATGCGACCCTGTCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTG-AAGATGTTCAAGTGCACCGACA-CCTTCCTCGGCATGTGCGGCCCT-CCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAG-CCGTTGTCTGAGTGAAGGACCAAATAAAAATAATGAAGC-TAGAA-GGTGTTTGCATGTTACTTGGGAGACTTGTGTTTCCCCTGGACTTGAGAGGGACATGAGAACAATGTTAATATTATCTTGTGATAATAGATATATATTGTCTAAAAAAA]

[+] EMBL CF336632             [ATGGACTGAAGGGAGTAGAAAAACCACAAACACAAAGCGTAAAGCCATCTACTAGTACCAAGTAGAGGAAATAGCTCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTCTCTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTG CAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGCTCTACACCTGCGACGACATCGTCAAGAAATGCGACCCTGTCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTG AAGATGTTCAAGTGCACCGACA CCTTCCTCGGCATGTGCGGCCCT CCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAG CCGTTGTCTGAGTGAAGGACCAAATAAAAAT                                                                                                                           ]
[+] EMBL AB059238             [                           AAACACAAAGCGTAAAGCCATCTACTAGTACCAAGTAGAGGAAATAGCTCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTCTCTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTG CAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGCTCTACACCTGCGACGACATCGTCAAGAAATGCGACCCTGTCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTG AAGATGTTCAAGTGCACCGACA CCTTCCTCGGCATGTGCGGCCCT CCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAG CCGTTGTCTGAGTGAAGGACCAAATAAAAATAATGAAGC TAGAA GGTGTCTGCATGTTACTTGGGAGACTTGTGTTTCCCCTGGACTTGAGAGGGACATGAGAACAATGTTAATATTATCTTGTGACAATAGATA                 ]
[+] EMBL CF307868             [                           AAACACAAAGCGTAAAGCCATCTACTAGTACCAAGTAGAGGAAATAGCTCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTCTCTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTG CAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGCTCTACACCTGCGACGACATCGTCAAGAAATGCGACCCTGTCTGCAAG AATGCGCCGTCGTCAAGACCTACCCTGGN AAGATGTTCAAGTGCACCGACA CCTTCCTCGGCATGTGCGGCCCT CCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATACATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAG CCGTTGTCTGAGTGAAGGACCAAA                                                                                                                                  ]
[+] EMBL AK059239             [                              CACAAAGCGTAAAGCCATCTACTAGTACCAAGTAGAGGAAATAGCTCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTCTCTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTG CAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGCTCTACACCTGCGACGACATCGTCAAGAAATGCGACCCTGTCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTG AAGATGTTCAAGTGCACCGACA CCTTCCTCGGCATGTGCGGCCCT CCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAG CCGTTGTCTGAGTGAAGGACCAAATAAAAA                                                                                                                            ]
[+] EMBL BU673925             [                                   gGCTTTAAGCCATCTACTAGTACCAAGTAGAGGAAATAGCTCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTCTCTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTG CAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGCTCTACACCTGCGACGACATCGTCAAGAAATGCGACCCTGTCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTG AAGATGTTCAAGTGCACCGACA CCTTCCTCGGCATGTGCGGCCCT CCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAGCCCGTTGTCTGAGTGAAGGACCAAATAAAAATAATGAAGCTTGGAAGGGGGTTTGCATGTTACTTGGGAaa                                                                                    ]
[+] EMBL AU092803             [                                                CTACTAGTACCAAGTAGAGNAAATAGTCCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCA TCTCTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTGCCAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGACATCAACCCGGGNCAGCTNAAGTGCTGCANCAACTGCAACTTCTCCTTCTCGGGGCTCTACACCTGCGACGACATCGTCAAGAAATGCGACCCTGTCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTG AAGATGTTCAAGTGCACCGACA CCTTCCTCGGCATGTGCGGCCCT CCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAG CCGTTGTCTGAGTGAAGGACCAAATAAAAATAATGAAGC TAGAA GGTGTTTGCATGTTAaaaa                                                                                         ]
[+] EMBL CB682786             [                                                                    AAATACCTCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTCTCTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTG CAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGCTCTACACCTGCGACGACATCGTCAAGAAATGCGACCCTGTCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTG AAGATGTTCAAGTGCACCGACA CCTTCCTCGGCATGTGCGGCCCT CCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAG CCGTTGTCTGAGTGAAGGACCAAATAAAAATAATGAAGC TAGAA GGTGTTTGCATGTTACTTGGGAGACTTGTGTTTCCCCTGGACTTGAGAGGGACATGAGAACAA                                             ]
[+] EMBL CB096984             [                                                                     AATAGCTCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTCTCTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTG CAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCCCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGCTCTACACCTGCGACGACATCGTCAAGAAATGCGACCCTGTCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTG AAGATGTTCAAGTGCACCGACA CCTTCCTCGGCATGTGCGGCCCT CCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATACG CCGTTGTCTGAGTGAAGGACCAAATAAAAATAATGAAGC TAGAA GGTGTTTGCATGTTACTTGGGAGACTTGTGTTTCCCCTGGACTTGAGAGGGACATGAGAACAATGGTAATATTATCTTGTGATAATAGATATATATTGTCcatattat]
[+] EMBL CK085165             [                                                                                                                          TTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTG CAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGCTCTACACCTGCGACGACATCGTCAAGAAATGCGACCCTGTCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTG AAGATGTTCAAGTGCACCGACA CCTTCCTCGGCATGTGCGGCCCT CCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAG CCGTTGTCTGAGTGAAGGACCAAATAAAAATAATGAAGC TAG                                                                                                               ]
[-] EMBL CF307869             [                                                                                                                                                                                                                                                                                                                ACCCTGTCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTGNAAGATGTTCAAGTGCACCGACACCCTTCCTCGGCATGTGCGGCCCT CCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATACATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAG CCGTTGTCTGAGTGAAGGACCAAATAAAAATAATGAAGC TAGAA GGTGTTTGCATGTTACTTGGGAGACTTGTGTTTCCCCTGGACTTGAGAGGGACATGAGAACAATGTTAATATTATCTTGTGATAATAGATATATATTGTCTAAAAAAA]
[-] EMBL BI306073             [                                                                                                                                                                                                                                                                                                                                                                            ACCGACA CCTTCCTCGGCATGTGCGGCCCT CCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAG CCGTTGTTTGAGTGAAGGACCAAATAAAAATAATGAAGC TAGAA GGTGTTTGCATGTTACTTGGGAGACTTGTGTTTCCCCTGGACTTGAGAGGGACATGAGAACAATGTTAATATTATCTTGTGATAATAGATAT                ]
[+] EMBL OSS3139A             [                                                                                                                                                                                                                                                                                                                                                                                    CCTTCCTCGGCATGTGCGGNCCT CCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGNATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAG CCGTTGTCTGAGTNAAGGACCAAATAAAAATAATGAAGC TAGAA GGTGTCTGCATGTTACTTGGGAGACTTGTGTTTCCCCTGGACTTGAGAGGGn                                                        ]
[+] EMBL OSS3114A             [                                                                                                                                                                                                                                                                                                                                                                                    CCTTCCTCGGCATGTGCGGCCCT CCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAG CCGTTGTCTGAGTGAAGGACCAAATAAAAATAATGAAGC                                                                                                                   ]
[-] EMBL CF336631             [                                                                                                                                                                                                                                                                                                                                                                                                 GTGCGGCCCTCCCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAG CCGTTGTCTGAGTGAAGGACCAAATAAAAATAATGAAGC TAGAA GGTGTTTGCATGTTACTTGGGAGACTTGTGTTTCCCCTGGACTTGAGAGGGACATGAGAACAATGTTAATATTATCTTGTGATAATAGATATATATTGTCTAAAAAAA]
[-] EMBL CF277524             [                                                                                                                                                                                                                                                                                                                                                                                                    CGGCCCTCCCCTGCAAGCACTGATCGATCGATCGATCGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAG CCGTTGTCTGAGTGAAGGACCAAATAAAAATAATGAAGC TAGAA GGTGTTTGCATGTTACTTGGGAGACTTGTGTTTCCCCTGGACTTGAGAGGGACATGAGAACAATGTTAATATTATCTTGTGATAATAGATATATATTGTCTAAAAAAA]


>consensus_15411#1 ATGGACTGAAGGGAGTAGAAAAACCACAAACACAAAGCGTAAAGCCATCTACTAGTACCA AGTAGAGGAAATAGCTCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTC TCTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTGCAA AAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCT GCAGCAACTGCAACTTCTCCTTCTCGGGGCTCTACACCTGCGACGACATCGTCAAGAAAT GCGACCCTGTCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTGAAGATGTTCAAGT GCACCGACACCTTCCTCGGCATGTGCGGCCCTCCCTGCAAGCACTGATCGATCGATCGAT CGATGATGACCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGT GTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACA ATAAGCCGTTGTCTGAGTGAAGGACCAAATAAAAATAATGAAGCTAGAAGGTGTTTGCAT GTTACTTGGGAGACTTGTGTTTCCCCTGGACTTGAGAGGGACATGAGAACAATGTTAATA TTATCTTGTGATAATAGATATATATTGTCTAAAAAAA



consensusID : consensus_15411#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 440
fasta sequence
                              [CTGAAGGAGTAGAAACGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACANTNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANCCCCTTTTTTTGCCTTTAAAAAAAAAAGGGAAAAATCGGGGCCAAAAAAAAAAAACCCCCAAAAAAAAAAGGAAAAAAAAAAAAAAGGGGGGGGTTTAAAAAAAGGGAAAAAGGAAAAAAACGGGGGGAAAAAAAAAAAAAAGGCTTGAAAAAAAAACCCCTTTTCCAAAAGGGGGAAAAAAAAAAAAAAGCCCAAAAAAAACCCCTTTAA]

[+] EMBL CF307599             [CTGAAGGAGTAGAAACGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACANTNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANCCCCTTTTTTTGCCTTTAAAAAAAAAAGGGAAAAATCGGGGCCAAAAAAAAAAAACCCCCAAAAAAAAAAGGAAAAAAAAAAAAAAGGGGGGGGTTTAAAAAAAGGGAAAAAGGAAAAAAACGGGGGGAAAAAAAAAAAAAAGGCTTGAAAAAAAAACCCCTTTTCCAAAAGGGGGAAAAAAAAAAAAAAGCCCAAAAAAAACCCCTTTAA]


>consensus_15411#2 CTGAAGGAGTAGAAACGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTG TGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACANTNNAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANCCCCTTTTTTT GCCTTTAAAAAAAAAAGGGAAAAATCGGGGCCAAAAAAAAAAAACCCCCAAAAAAAAAAG GAAAAAAAAAAAAAAGGGGGGGGTTTAAAAAAAGGGAAAAAGGAAAAAAACGGGGGGAAA AAAAAAAAAAAGGCTTGAAAAAAAAACCCCTTTTCCAAAAGGGGGAAAAAAAAAAAAAAG CCCAAAAAAAACCCCTTTAA



consensusID : consensus_15411#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 302
fasta sequence
                              [TCCGCCCACGCNTCCGAAAGCGTAAAGCCATCTACTAGTACCAAGTAGAGGAAATAGCTCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTCTNTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTGCAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGNCATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGNTCTACACCTGCGACGNCATCGTCAAGAAATGCGACCCTGTNTGCAAGAA]

[+] EMBL C28025               [TCCGCCCACGCNTCCGAAAGCGTAAAGCCATCTACTAGTACCAAGTAGAGGAAATAGCTCAAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTCTNTTGGTGATCCTGGCTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTGCAAAAGAAAATGCCGTGGGTGAGAGCAAGGCGATCGNCATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTCTCCTTCTCGGGGNTCTACACCTGCGACGNCATCGTCAAGAAATGCGACCCTGTNTGCAAGAA]


>consensus_15411#3 TCCGCCCACGCNTCCGAAAGCGTAAAGCCATCTACTAGTACCAAGTAGAGGAAATAGCTC AAGGCTTTGGAACGCAAGAACATCACCATGAAGAGCAGCACTCTNTTGGTGATCCTGGCT GTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTGCAAAAGAAAATGCCGTGGGT GAGAGCAAGGCGATCGNCATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACTTC TCCTTCTCGGGGNTCTACACCTGCGACGNCATCGTCAAGAAATGCGACCCTGTNTGCAAG AA



consensusID : consensus_15411#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 257
fasta sequence
                              [ATCGATCGNTCGATCGATGATGNCCTGAATAATGCATGAACGCGNGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATANCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAGCCGTTGTNTGAGTGAAGGNCCAAATAAAAATAATGAAGCTAGAAGGTGTTTGCATGTTAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU093446             [ATCGATCGNTCGATCGATGATGNCCTGAATAATGCATGAACGCGNGCCATTGCTGTCATATATCTGTGATCTGTGTGATATACAGTGTGCATTATATANCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAGCCGTTGTNTGAGTGAAGGNCCAAATAAAAATAATGAAGCTAGAAGGTGTTTGCATGTTAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_15411#4 ATCGATCGNTCGATCGATGATGNCCTGAATAATGCATGAACGCGNGCCATTGCTGTCATA TATCTGTGATCTGTGTGATATACAGTGTGCATTATATANCATATCTCGATGCTAGTATAC TGTATACTCGAACAATAAGCCGTTGTNTGAGTGAAGGNCCAAATAAAAATAATGAAGCTA GAAGGTGTTTGCATGTTAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15411#1      -----------------------------------------ATGGACTGAAGGGAGTAGA 19
consensus_15411#3      -----------------------------------------------------------T 1
consensus_15411#0      GCTAATATGTTGTTCGGATCTGAACGCCTATATATACAGATGCTCTCCTGGGCTTTGGCC 60
consensus_15411#2      ------------------------------------------------------------
consensus_15411#4      ---------------------------------------------ATCGATCGNTCGATC 15
                                                                                   

consensus_15411#1      AAAACCACAAACAC-AAAGCGTA-AAGCCATCTACTAGTACCAAGTAGAGGAAATAGCTC 77
consensus_15411#3      CCGCCCACGCNTCCGAAAGCGTA-AAGCCATCTACTAGTACCAAGTAGAGGAAATAGCTC 60
consensus_15411#0      ATAACCACAAACAC-AAAGCGTA-AAGCCATCTACTAGTACCAAGTAGAGGAAATAGCTC 118
consensus_15411#2      ---------CTGAAGGA---GTAGAAACGAGCCATTGCTGTCATATATCTGTGATCTGTG 48
consensus_15411#4      GATGATGNCCTGAATAATGCATGAACGCGNGCCATTGCTGTCATATATCTGTGATCTGTG 75
                                       *    *  *  *   * * *  *  **  **   *  **   * 

consensus_15411#1      AAGGCTTTGGAACGCAAGA-ACATCAC-CATGAAGAGCAGCACTCTCTTGGTGATCCTGG 135
consensus_15411#3      AAGGCTTTGGAACGCAAGA-ACATCAC-CATGAAGAGCAGCACTCTNTTGGTGATCCTGG 118
consensus_15411#0      AAGGCTTTGGAACGCAAGA-ACATCAC-CATGAAGAGCAGCACTCTCTTGGTGATCCTGG 176
consensus_15411#2      TGATATACAGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAN 108
consensus_15411#4      TGATATACAGTGTGCATTATATANCATATCTCGATGCTAGTATACTGTATACTCGAACAA 135
                            *   *   ***  * * * **    *  *    ** *  ** *            

consensus_15411#1      CTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTGCAAAAGAAAATGCCGTGG 195
consensus_15411#3      CTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTGCAAAAGAAAATGCCGTGG 178
consensus_15411#0      CTGTCCAGGCCGCTCTTATCATGGGAATCTTTGCTGCTGTTGCAAAAGAAAATGCCGTGG 236
consensus_15411#2      TNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 168
consensus_15411#4      TAAGCCGTTGTNTGAGTGAAGGNCCAAATAAAAATAATGAAGCTAGAAGGTGTTTGCATG 195
                                                **                 * *             

consensus_15411#1      GTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACT 255
consensus_15411#3      GTGAGAGCAAGGCGATCGNCATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACT 238
consensus_15411#0      GTGAGAGCAAGGCGATCGACATCAACCCGGGGCAGCTCAAGTGCTGCAGCAACTGCAACT 296
consensus_15411#2      AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 228
consensus_15411#4      TTAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 255
                          *    **    *     *  **        *    **       *  **    **  

consensus_15411#1      TCTCCTTCTCGGGGCTCTACACCTGCGACGA------CATCGTCAAGAAATGCGACCCTG 309
consensus_15411#3      TCTCCTTCTCGGGGNTCTACACCTGCGACGN------CATCGTCAAGAAATGCGACCCTG 292
consensus_15411#0      TCTCCTTCTCGGGGCTCTACACCTGCGACGA------CATCGTCAAGAAATGCGACCCTG 350
consensus_15411#2      NCCCCTTTTTTTGCCTTTAAAAAAAAAAGGGAAAAATCGGGGCCAAAAAAAAAAAACCCC 288
consensus_15411#4      AA---------------------------------------------------------- 257
                                                                                   

consensus_15411#1      TCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTGAAGATGTTCAAGTGCACCGACA 369
consensus_15411#3      TNTGCAAGAA-------------------------------------------------- 302
consensus_15411#0      TCTGCAAGAAATGCGCCGTCGTCAAGACCTACCCTGTGAAGATGTTCAAGTGCACCGACA 410
consensus_15411#2      CAAAAAAAAAAGGAAAAAAAAAAAAAAGGGGGGGGTTTAAAAAAAGGGAAAAAGGAAAAA 348
consensus_15411#4      ------------------------------------------------------------
                                                                                   

consensus_15411#1      CCTTCCTCGGCATGTGCGGCCCTCCCTGCAAGCACTGATCGATCGATCGATCGATGATGA 429
consensus_15411#3      ------------------------------------------------------------
consensus_15411#0      CCTTCCTCGGCATGTGCGGCCCTCCCTGCAAGCACTGATCGATCGATCGATCGATGATGA 470
consensus_15411#2      AACGGGGGGAAAAAAAAAAAAAAGGCTTGAAAAAAAAACCCCTTTTCCAAAAGGGGGAAA 408
consensus_15411#4      ------------------------------------------------------------
                                                                                   

consensus_15411#1      CCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATAC 489
consensus_15411#3      ------------------------------------------------------------
consensus_15411#0      CCTGAATAATGCATGAACGCGAGCCATTGCTGTCATATATCTGTGATCTGTGTGATATAC 530
consensus_15411#2      AAAAAAAAAAAGCCCAAAAAAAACCCCTTTAA---------------------------- 440
consensus_15411#4      ------------------------------------------------------------
                                                                                   

consensus_15411#1      AGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAGCCGT 549
consensus_15411#3      ------------------------------------------------------------
consensus_15411#0      AGTGTGCATTATATATCATATCTCGATGCTAGTATACTGTATACTCGAACAATAAGCCGT 590
consensus_15411#2      ------------------------------------------------------------
consensus_15411#4      ------------------------------------------------------------
                                                                                   

consensus_15411#1      TGTCTGAGTGAAGGACCAAATAAAAATAATGAAGCTAGAAGGTGTTTGCATGTTACTTGG 609
consensus_15411#3      ------------------------------------------------------------
consensus_15411#0      TGTCTGAGTGAAGGACCANATAANAATAATGAAGCTAGAAGGTGTTTGCAAAANNNANNN 650
consensus_15411#2      ------------------------------------------------------------
consensus_15411#4      ------------------------------------------------------------
                                                                                   

consensus_15411#1      GAGACTTGTGTTTCCCCTGGACTTGAGAGGGACATGAGAACAATGTTAATATTATCTTGT 669
consensus_15411#3      ------------------------------------------------------------
consensus_15411#0      NNNNNNNNNANNNNNNNNNNNNNNNNNNANNAANNNNAAAAAAAAAACT----------- 699
consensus_15411#2      ------------------------------------------------------------
consensus_15411#4      ------------------------------------------------------------
                                                                                   

consensus_15411#1      GATAATAGATATATATTGTCTAAAAAAA 697
consensus_15411#3      ----------------------------
consensus_15411#0      ----------------------------
consensus_15411#2      ----------------------------
consensus_15411#4      ----------------------------
                                                   




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)