These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_15432#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 966 fasta sequence [ATAAACAAAACACCGATCGAGTCTTCGAGCTCGTTCCCGTGAGTTCTTTTATTAGTTTGCTCCATCGATCCCCCTGCTCTCTTCCTCTGCTTCTGTTGTTAGGG-TTCAGAGGACGAACAACGCCGGTGGTTGGACTACTCTCGCGCTCGGGGAGATGGCAAGCTTCGGCGAAGACAACAGAGCAGCGACACAGAGGGAGGAGGTATGCATACTCATCTACTATTCATCTAATTCTCTGTGTTGTCTCCGTGCCTCTCCTCGACTTTACCATGATCAGCCTACCATGGCATGAACATTTCTTGCTTTCGGTTATCGCCAACGAACTGAAGTTTTCTTTCTTTTTTTTCTGTTTCATTTCCCTCTATTTCTCGTATGCGAATATAGCTTTGGTGATCGAGAGGAGTATTTATATTATGCCTCTGGTGAAGTGTTTCGCTAGACAAATGCATTTGTTAATGGCAGTAAATATTTCCGTTCATAACTCTCAACCAATATTCAGGTGGGCATTAGCAATTAGAAAGAGTCTCTTAAAATGATCTCCGTTACATGGCCAAAACTCTAGCAACTTAGACCGAAGAATTTAGAGCACTTACAGTTATTAATCAAAACGTTAACAAGAGTTTCTGAAATATATTACTCTTGTTTAGAGTTCAAATTTCTTTCTCTCTTTATCTCTTTCGAAGTATACTATATAGTTCAAAATTTTCTTATCTGCCGCCACCGTTTCCCGGCGTTGATTTTGGGATGGAAACAACACCAAGTCACC-GTGAACGTCACGTGGCATTTGAAAACTCAGGTCAGGGAAAGGAACCCAACAATACAATTATACCGACTTGGAAACCAAATCAGAGGGAAGTAGAGGAGGCCAATTTGGTCTCGCCGTTTGTTGCTTTCATGAGAAACAAGAACAGCCAAATTTTCAAAACGTGGGGGCTCCGTTCATCCAAGTAAAAAAAAAAATCAAAT] [+] EMBL CA764788 [ATAAACAAAACACCGATCGAGTCTTCGAGCTCGTTCCCGTGAGTTCTTTTATTAGTTTGCTCCATCGATCCCCCTGCTCTCTTCCTCTGCTTCTGTTGTTAGGG TTCAGAGGACGAACAACGCCGGTGGTTGGACTACTCTCGCGCTCGGGGAGATGGCAAGCTTCGGCGAAGACAACAGAGCAGCGACACAGAGGGAGGAGGTATGCATACTCATCTACTATTCATCTAATTCTCTGTGTTGTCTCCGTGCCTCTCCTCGACTTTACCATGATCAGCCTACCATGGCATGAACATTTCTTGCTTTCGGTTATCGCCAACGAACTGAAGTTTTCTTTC TTTTTTTCTGTTTCATTTCCCTCTATTTCTCGTATGCGAATATAGCTTTGGTGATCGAGAGGAGTATTTATATTATGCCTCTGGTGAAGNGTTTCGCTAGACAAATGCATTTGTTAATGGCAGTAAATATTTCCGTTCATAACTCTCAACCAATATTCAGGTGGGCATTAGCAATTAGAAAGAGTCTCTTAAAATGATCTCCGTTACATGGCCAAAACTCTAGCAACTTAGACCGAAGAATTTAGAGCACTTACAGTTATTAATCAAAACGTTAACAAGAGTTTCTGAAATATATTACTCTTGTTTAGAGTTCAAATTTCTTTCTCTCTTTATCTCTTTCGAAGTATACTATATAGTTCAAAATTTTCTTATCTGCCGCCACCGTTTCCCGGCGTTGATTCTGGGATGGAAACAACACCAAGTCACCGGGGAACGTCACGTGGCATTT ] [+] EMBL CF304202 [ ACCGATCGAGTCTTCGAGCTCGTTCCCGTGAGTTCTTTTATTAGTTTGCTCCATCGATCCCCCTGCTCTCTTCCTCTGCTTCTGTTGTTAGGG TTCAGAGGACGAACAACGCCGGTGGTTGGACTACTCTCGCGCTCGGGGAGATGGCAAGCTTCGGCGAAGACAACAGAGCAGCGACACAGAGGGAGGAGGTATGCATACTCATCTACTATTCATCTAATTCTCTGTGTTGTCTCCGTGCCTCTCCTCGACTTTACCATGATCAGCCTACCATGGCATGAACATTTCTTGCTTTCGGTTATCGCCAACGAACTGAAGTTTTCTTTCTTTTTTTTCTGTTTCATTTCCCTCTATTTCTCGTATGCGAATATAGCTTTGGTGATCGAGAGGAGTATTTATATTATGCCTCTGGTGAAGTGTTTCGCTAGACAAATGCATTTGTTAATGGCAGTAAATATTTCCGTTCATAACTCTCAACCAATATTCAGGTGGGCATTAGCAATTAGAAAGAGTCTCTTAAAATGATCT ] [+] EMBL CB633319 [ TAGGGCCTCAGAGGACGAACAACGCCGGTGGTTGGACTACTCTCGCGCTCGGGGAGATGGCAAGCTTCGGCGAAGACAACAGAGCAGCGACACAGAGGGAGGAGGTATGCATACTCATCTACTATTCATCTAATTCTCTGTGTTGTCTCCGTGCCTCTCCTCGACTTTACCATGATCAGCCTACCATGGCATGAACATTTCTTGCTTTCGGTTATCGCCAACGAACTGAAGTTTTCTTTCTTTTTTTTCTGTTTCATTTCCCTCTATTTCTCGTATGCGAATATAGCTTTGGTGATCGAGAGGAGTATTTATATTATGCCTCTGGTGAAGTTTTTCGCTAGACAAATGCATTTGTTAATGGCAGTAAATATTTCCGTTCATAACTCTCAACCAATATTCAGGTGGGCATTAGCAATTAGAAAGAGTCTCTTAAAATGATCTCCGTTACATGGCCAAAACTCTAGCAACTTAGACCGAAGAATTTAGAGCACTTACAGTTATTAATCAAAACGTTAACAAGAGTTTCTGAAATATATTAATCTTGTTTAGAGTTCAAATTTCTTTCTCTCTTTATCTCTTTCGAAGTATACTATATAGTTCAAAATTTTCTTATCTGCCGCCACCGTTTCCCGGCGTTGATTTTGGGATGGAAACAACACCAAGTCACC GTGAACGTCACGTGGCATTTGAAAACTCAGGTCAGGGAAAGGAACCCAACAGTACAATTATACCGACTTGGAAACCAAATCAGAGGGAAGTAGAGGAGGCCAATTTGGTCTCGCCGTTTGTTGCTTTCATGAGAAACA ] [+] EMBL CB238424 [ TATTTATATTATGCCTCTGGTGAAGGGTTTCGCTAGACAAATGCATTTGTTAATGGCAGTAAATATTTCCGTTCATAACTCTCAACCAATATTCAGGTGGGCATTAGCAATTAGAAAGAGTCTCTTAAAATGATCTCCGTTACATGGCCAAAACTCTAGCAACTTAGACCGAAGAATTTAGAGCACTT ] [+] EMBL CF305004 [ TTATGCCTCTGGTGAAGTGTTTCGCTAGACAAATGCATTTGTTAATGGCAGTAAATATTTCCGTTCATAACTCTCAACCAATATTCAGGTGGGCATTAGCAATTAGAAAGAGTCTCTTAAAATGATCTCCGTTACATGGCCAAAACTCTAGCAACTTAGACCGAAGAATTTAGAGCACTTACAGTTATTAATCAAAACGTTAACAAGAGTTTCTGAAATATATTACTCTTGTTTAGAGTTCAAATTTCTTTCTCTCTTTATCTCTTTCGAAGTATACTATATAGTTCAAAATTTTCTTATCTGCCGCCACCGTTTCCCGGCGTTGATTTTGGGATGGAAACAACACCAAGTCACC GTGAACGTCACGTGGCATTTGAAAACTCAGGTCAGGGAAAGGAACCCAACAATACAATTATACCGACTTGGAAACCAAATCAGAGGGAAGTAGAGGAGGCCAATTTGGTCTCGCCGTTTGTTGCTTTCATGAGAAACAAGAACAGCCAAATTTTCAAAACGTGGGGGCTCCGTTCATCCAAGTAAAAAAAAAAATCAAAT] [+] EMBL AK062613 [ CCGTTCATAACTCTCAACCAATATTCAGGTGGGCATTAGCAATTAGAAAGAGTCTCTTAAAATGATCTCCGTTACATGGCCAAAACTCTAGCAACTTAGACCGAAGAATTTAGAGCACTTACAGTTATTAATCAAAACGTTAACAAGAGTTTCTGAAATATATTACTCTTGTTTAGAGTTCAAATTTCTTTCTCTCTTTATCTCTTTCGAAGTATACTATATAGTTCAAAATTTTCTTATCTGCCGCCACCGTTTCCCGGCGTTGATTTTGGGATGGAAACAACACCAAGTCACC GTGAACGTCACGTGGCATTTGAAAACTCAGGTCAGGGAAAGGAACCCAACAATACAATTATACCGACTTGGAAACCAAATCAGAGGGAAGTAGAGGAGGCCAATTTGGTCTCGCCGTTTGTTGCTTTCATGAGAAACAAGAACAGCCAAATTTTCAAAACGTGGGGGCTCCGT ] consensusID : consensus_15432#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 792 fasta sequence [TCCTTATTTTTTTGGCACAGAAATGTTGTAAATTCCATTGCACCTAGCTACATGCTGACAATATCCATATTTACATCCCAATTAATAATTGGATCAAACTCTATGCCCCCCCTTGATTGCCCTGCCATACTCTCACAGTCTCAGCGACAAATGTAAACATGTAGTGCTGACTGCTGAGATTGGAGCACACTATTCCGTCGCGCCTGACGTGCACGCAGGCCTTCGTGGAGGAAGCTGGGGATATGCCGTGCGCTGCAACTTGGGTTTCAGGGGCTCGGTTGTGCCTTTTGTGCTGTTGCTTGCGCCTTGCTTGCCAAGTGCCCAATCGGCGGAATCGAAATAGGCACGCTCATGGTCCTTATTAATGAGAGGTTTCTTTGGAGAAATTCCTCCATATTTGTTCTGGGACGATCCCTGGAAACAATTCAGACTTCAGTTTAGAAAAGCATAAATACAAAGGGACAGCAAAACTTCAGACATGCGTAAGCACTAAGCAGTGGTATTCAGAATTTCAGATTTACACTTGTGCGGAACCACAGGCTAAATGGTTAGTTGAACATCACATCAACAACTTGCACTACATATGAATCATGGAGTAAAGGTATCCCACTCCTGAACTCCAATGAGCAGTGTCTTAATTAGGTCACATGTTAGAAATATGCAACAGGCACAGCAGTTGACAGTGTTAGGAAAGGATCAAGCTGACCAACTTTTCCCCAAGTTGTAGTGCTCAAGTATTTCCAGCCACACTGACCAATCAGGATGCATCCAGCCAACTAGTGCTTCTGTTAT] [+] EMBL CB633320 [TCCTTATTTTTTTGGCACAGAAATGTTGTAAATTCCATTGCACCTAGCTACATGCTGACAATATCCATATTTACATCCCAATTAATAATTGGATCAAACTCTATGCCCCCCCTTGATTGCCCTGCCATACTCTCACAGTCTCAGCGACAAATGTAAACATGTAGTGCTGACTGCTGAGATTGGAGCACACTATTCCGTCGCGCCTGACGTGCACGCAGGCCTTCGTGGAGGAAGCTGGGGATATGCCGTGCGCTGCAACTTGGGTTTCAGGGGCTCGGTTGTGCCTTTTGTGCTGTTGCTTGCGCCTTGCTTGCCAAGTGCCCAATCGGCGGAATCGAAATAGGCACGCTCATGGTCCTTATTAATGAGAGGTTTCTTTGGAGAAATTCCTCCATATTTGTTCTGGGACGATCCCTGGAAACAATTCAGACTTCAGTTTAGAAAAGCATAAATACAAAGGGACAGCAAAACTTCAGACATGCGTAAGCACTAAGCAGTGGTATTCAGAATTTCAGATTTACACTTGTGCGGAACCACAGGCTAAATGGTTAGTTGAACATCACATCAACAACTTGCACTACATATGAATCATGGAGTAAAGGTATCCCACTCCTGAACTCCAATGAGCAGTGTCTTAATTAGGTCACATGTTAGAAATATGCAACAGGCACAGCAGTTGACAGTGTTAGGAAAGGATCAAGCTGACCAACTTTTCCCCAAGTTGTAGTGCTCAAGTATTTCCAGCCACACTGACCAATCAGGATGCATCCAGCCAACTAGTGCTTCTGTTAT] consensusID : consensus_15432#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 753 fasta sequence [GATATCGCGTCCGTCTCTCCTCCTCTTTTCTGCCTGCGTCTCACCAACCTCCTCTCCTCTCCTCTCCTCTCCTATATCTTGCTCGGTCGCGCGCGGTCGAGTGGTCGACGCAGATAAACAAAACACCGATCGAGTCTTCGAGCTCGTTCCCGTGAGTTCTTTTATTAGTTTGCTCCATCGATCCCCCTGCTCTCTTCCTCTGCTTCTGTTGTTAGGGTTCAGAGGACGAACAACGCCGGTGGTTGGACTACTCTCGCGCTCGGGGAGATGGCAAGCTTCGGCGAAGACAACAGAGCAGCGACA-CAGAGGG-AGGAGGGATCGTCCCAGAACAAATATGGAGGAATTTCT-CCAAAGAAACCTCTCATTAATAAGGACCATGAGCGTGCCTATTTCGATTCCGCCGATTGGGCACTTGGCAAGCAAGGCG-CAAGCAACAGCACAAAAGGCACAACCGAGCCCCTGAAACCCAAGTTGCAGCGCACGGCATATCCCCAGCTTCCTCCACGAAGGCCTGCGTGCACGTCAGGCGCGACGGAATAGTGTGCTCCAATCTCAGCAGTCAGCACTACATGTTTACATTTGTCGC-TGAGACTGTGAGAGTATGGCAGGGCAATCACAGGGGGGGCATAGAGTTTGATCCAATTATTAATTGGGATGTAAATATGGATATTGTCAGCATGTAGCTATGTGCAATGGAATTTACAACATTTCTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF334043 [GATATCGCGTCCGTCTCTCCTCCTCTTTTCTGCCTGCGTCTCACCAACCTCCTCTCCTCTCCTCTCCTCTCCTATATCTTGCTCGGTCGCGCGCGGTCGAGTGGTCGACGCAGATAAACAAAACACCGATCGAGTCTTCGAGCTCGTTCCCGTGAGTTCTTTTATTAGTTTGCCCCATCGATCCCCCTGCTCTCTTCCTCTGCTTCTGTTGTTAGGGTTCAGAGGACGAACAACGCCGGTGGTTGGACTACTCTCGCGCTCGGGGAGATGGCAAGCTTCGGCGAAGACAACAGAGCAGCGACA CAGAGGG AGGAGGGATCGTCCCAGAACAAATATGGAGGAATTTCT CCAAAGAAACCTCTCATTAATAAGGACCATGAGCGTGCCTATTTCGATTCCGCCGATTGGGCACTTGGCAAGCAAGGCG CAAGCAACAGCACAAAAGGCACAACCGAGCCCCTGAAACCCAAGTTGCAGCGCACGGCATATCCCCAGCTTCCTCCACGAAGGCCTGCGTGCACGTCAGGCGCGACGGAATAGTGTGCTCCAATCTCAGCAGTCAGCACTACATGTTTACATTTGTCGC TGAGACTGTGAGAGTATGGCAGGGCAATC ] [+] EMBL AK062385 [ GATAAACAAAACACCGATCGAGTCTTCGAGCTCGTTCCCGTGAGTTCTTTTATTAGTTTGCTCCATCGATCCCCCTGCTCTCTTCCTCTGCTTCTGTTGTTAGGGTTCAGAGGACGAACAACGCCGGTGGTTGGACTACTCTCGCGCTCGGGGAGATGGCAAGCTTCGGCGAAGACAACAGAGCAGCGACA CAGAGGG AGGAGGGATCGTCCCAGAACAAATATGGAGGAATTTCT CCAAAGAAACCTCTCATTAATAAGGACCATGAGCGTGCCTATTTCGATTCCGCCGATTGGGCACTTGGCAAGCAAGGCG CAAGCAACAGCACAAAAGGCACAACCGAGCCCCTGAAACCCAAGTTGCAGCGCACGGCATATCCCCAGCTTCCTCCACGAAGGCCTGCGTGCACGTCAGGCGCGACGGAATAGTGTGCTCCAATCTCAGCAGTCAGCACTACATGTTTACATTTGTCGC TGAGACTGTGAGAGTATGGCAGGGCAATCACAGGGGGGGCATAGAGTTTGATCCAATTATTAATTGGGATGTAAATATGGATATTGTCAGCATGTAGCTATGTGCAATGGAATTTACAA ] [+] EMBL CF301016 [ AAACAAAACACCGATCGAGTCTTCGAGCTCGTTCCCGTGAGTTCTTTTATTAGTTTGCTCCATCGATCCCCCTGCTCTCTTCCTCTGCTTCTGTTGTTAGGGTTCAGAGGACGAACAACGCCGGTGGTTGGACTACTCTCGCGCTCGGGGAGATGGCAAGCTTCGGCGAAGACAACAGAGCAGCGACA CAGAGGG AGGAGGGATCGTCCCAGAACAAATATGGAGGAATTTCT CCAAAGAAACCTCTCATTAATAAGGACCATGAGCGTGCCTATTTCGATTCCGCCGATTGGGCACTTGGCAAGCAAGGCG CAAGCAACAGCACAAAAGGCACAACCGAGCCCCTGAAACCCAAGTTGCAGCGCACGGCATATCCCCAGCTTCCTCCACGAAGGCCTGCGTGCACGTCAGGCGCGACGGAATAGTGTGCTCCAATCTCAGCAGTCAGCACTACATGTTTACATTTGTCGC TGAGACTGTGAGAGTATGGCAGGGCAATCACAGGGGGGGCATAGAGTTTGATCCAATTATTAATTGGGATGTAAATATGGATATTGTCAGCATGTAGCTATG ] [+] EMBL CF308619 [ ACAAAACACCGATCGAGTCTTCGAGCTCGTTCCCGTGAGTTCTTTTATTAGTTTGCTCCATCGATCCCCCTGCTCTCTTCCTCTGCTTCTGTTGTTAGGGTTCAGAGGACGAACAACGCCGGTGGTTGGACTACTCTCGCGCTCGGGGAGATGGCAAGCTTCGGCGAAGACAACAGAGCAGCGACA CAGAGGG AGGAGGGATCGTCCCAGAACAAATATGGAGGAATTTCT CCAAAGAAACCTCTCATTAATAAGGACCATGAGCGTGCCTATTTCGATTCCGCCGATTGGGCACTTGGCAAGCAAGGCG CAAGCAACAGCACAAAAGGCACAACCGAGCCCCTGAAACCCAAGTTGCAGCGCACGGCATATCCCCAGCTTCCTCCACGAAGGCCTGCGTGCACGTCAGGCGCGACGGAATAGTGTGCTCCAATCTCAGCAGTCAGCACTACATGTTTACATTTGTCGC TGAGACTGTGAGAGTATGGTAGGGCAATCACAGGGGGGGCATAGAGTTTGATCCAATTATTAATTGGGATGTAAATATGGATATTGTCAGCATGTAGCTATGTGCAATGG ] [+] EMBL OSS15816A [ CGATCGAGTCTTCGAGCTCGTTCCCGTGAGTTCTTTTATTAGTTTGCTCCATCGATCCCCCTGCTCTCTTCCTCTGCTTCTGTTGTTAGGGTTCAGAGGACGAACAACGCCGGTGGTTGGACTACTCTCGCGCTCGGGGAGATGGCAAGCTTCGGCGAAGACAACAGAGCAGCGACA CAGAGGG AGGAGGGATCGTCCCAGAACAAATATGGAGGAATTTCT CCAAAGAAACCTCTCATTAATAAGGACCATGAGCGTGCCTATTTCGATTCCGCCGATTGGGCACTTGGCAAGCAAGGCG CAANAAACAGCACAAAAGGCACAACCGNGCCCCTGAAACCCAAGTTGCAGCGCACGGCATATCCCCAGCTTCCTTCACGGAGGCCTGCGTNCACGTCAGGCGCGACGGNATAGTGTGCTTCAATCTCAGCAGTTAGCACTNCATGTTT CATTTGTgn ] [+] EMBL CF293059 [ GTGAGTTCTTTTATTAGTTTGCTCCATCGATCCCCCTGCTCTCTTCCTCTGCTTCTGTTGTTAGGGTTCAGAGGACGAACAACGCCGGTGGTTGGACTACTCTCGCGCTCGGGGAGATGGCAAGCTTCGGCGAAGACAACAGAGCAGCGACA CAGAGGG AGGAGGGATCGTCCCAGAACAAATATGGAGGAATTTCT CCAAAGAAACCTCTCATTAATAAGGACCATGAGCGTGCCTATTTCGATTCCGCCGATTGGGCACTTGGCAAGCAAGGCG CAAGCAACAGCACAAAAGGCACAACCGAGCCCCTGAAACCCAAGTTGCAGCGCACGGCATATCCCCAGCTTCCTCCACGAAGGCCTGCGTGCACGTCAGGCGCGACGGAATAGTGTGCTCCAATCTCAGCAGTCAGCACTACATGTTTACATTTGTga ] [+] EMBL C73939 [ AGCGACA CAGAGGG AGGAGGGATCGTCCCAGAACAAATATGGAGGAATTTCT CCAAAGAAACCTCTCATTAATAAGGACCATGAGCGTGCCTATTTCGATTCCGCCGATTGGGCACTTGGCAAGCAAGGCG CAA NAACAGCACAAAAGGCACAACCGAGCCCCTGAAACCCAAGTTGCAGCGCACGGCATATCCCCAGCTTCCTCCACGAAGGCCTGCGTGCACGTCAGGCGCGACGGAATAGTGTGCTCCAATCTCAGCAGTCAGCACTACATGTTTACATTTGTCGCTTGAGACTGTGAGAGTATGGCAGGGCAATCACAGGGGGGGCATAGAGTTTNATCCCATTATTTATTGGGATGTTAATATGGNTAT ] [+] EMBL C99720 [ GCGACA CAGAGGG AGGAGGGATCGTCCCAGAACAAATATGGAGGAATTTCT CCAAAGAAACCTCTCATTAATAAGGACCATGAGCGTGCCTATTTCGATTCCGCCGATTGGGCA TTGGCAAGCAAGGCGCCAAGCAACAGCACAAAAGGCACAACCGAGCCCCTGAAACCCAAGTTGCAGCGCACGGCATATCCCCAGCTTCCTCCNCGAAGGCCTGCGTGCACGTCAGGCGCGACGGAATAGTGTGCTCCAATCTCAGCAGTCAGCACTACATGTTTACATTTGTCGC TGAGACTGTGAGAGTATGGCAGGGCAATCACAGGGGGGGCATAGAGTTTGATCCAATTATTAATTGGGATGTAAATATGGATATTGTCAGCATGTAGCTATGTGCAATGGAATTTACAACATTTCTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL C99715 [ cttCGACACCAGAGGGTAGGAGGGATCGTCCCAGAACAAAT TGGAGGATTTTCTCCCAAAGAAACCTCTCATTAATTAGGACC TGAGCGTGCCTATTTCGNTTCCGCCGATTGGGCA TTGGCAAGCAAGGCG CAAGCAACAGCACAAAAGGCACAACCGAG CCCTGAAACCCAAGTTGCAGCGCACGGCATATCCCCAGCTTCCTCCACGAAGGCCTGCGTGCACGTCAGGCGCGACGGAATAGTGTGCTCCAATCTCAGCNGTCAGCACTACATGTTTACATTTGTCGC TGAGACTGTGAGAGTATGGCAGGGCNATCACAGGGGGGGCATAGAGTTTGATCCAATTATTAATTGGGATGTAAATATGGATATTGTCAGCATGTAGCTATGTGCAATGGAATTTACAACATTTCTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CA763911 [ ATCGTCCCAGAACAAATATGGAGGAATTTCT CCAAAGAAACCTCTCATTAATAAGGACCATGAGCGTGCCTATTTCGATTCCGCCGATTGGGCACTTG GCAAGGCG CAAGCAACAGCACAAAAGGCACAACCGAGCCCCTGAAACCCAAGTTGCAGCGCACGGCATATCCCCAGCTTCCTCCACGAAGGCCTGCGTGCACGTCAGGCGCGACGGAATAGTGTGCTCCAATCTCAGCAGTCAGCACTACATGTTTACATTTGTCGC TGAGACTGTGAGAGTATGGCAGGGCAATCACAGGGGGGGCATAGAGTTTGATCCAATTATTAATTGGGATGTAAATATGGATATTGTCAGCATGTAGCTATGTGCAATGGAATTTACAACA ] [-] EMBL CF334042 [ GACCATGAGCGTGCCTATTTCGATTCCGCCGATTGGGCACTTGGCAAGCAAGGCG CAAGCAACAGCACAAAAGGCACAACCGAGCCCTTGAAACCCAAGTTGCAGCGCACGGCATATCCCCAGCTTCCTCCACGAAGGCCTGCGTGCACGTCAGGCGCGACGGAATAGTGTGCTCCAATCTCAGCAGTCAGCACTACATGTTTACATTTGTCGC TGAGACTGTGAGAGTATGGCAGGGCAATCACAGGGGGGGCATAGAGTTTGATCCAATTATTAATTGGGATGTAAATATGGATATTGTCAGCATGTAGCTATGTGCAATGGAATTTACAACATTTCTGTGCCAAAAAAAAAAAAAA ] [-] EMBL CF301017 [ GACCATGAGCGTGCCTATTTCGATTCCGCCGATTGGGCACTTGGCAAGCAAGGCG CAAGCAACAGCACAAAAGGCACAACCGAGCCCCTGAAACCCAAGTTGCAGCGCACGGCATATCCCCAGCTTCCTCCACGAAGGCCTGCGTGCACGTCAGGCGCGACGGAATAGTGTGCTCCAATCTCAGCAGTCAGCACTACATGTTTACATTTGTCGC TGAGACTGTGAGAGTATGGCAGGGCAATCACAGGGGGGGCATAGAGTTTGATCCAATTATTAATTGGGATGTAAATATGGATATTGTCAGCATGTAGCTATGTGCAATGGAATTTACAACATTTCTGTGACAAAAAA ] consensusID : consensus_15432#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 564 fasta sequence [CGAAGACAACAGACAGCGACACAGAGGAGGAGGGATCGTCCCAGAACAAATATGGAGGAATTTCTCCAAAGAAACCTCTCATTAATAAGGACCATGAGCGTGCCTATTTCGATTCCCCGATTGGGCAC-TTGGCAAG-CAAGGCGCAAGCAACAG-CACAAAAGGCACAA-CCGAGCCCC-TGAAACCC-AAG-TTGCAGCGC-AC-GGCATATCCCCAGC-TTCCT-CCACGAAGGCCTGCGTGCACG-TCAGGCGCGACGGAATAGTG-TGCTCCAATCTCAGCAGTCAGCACTACATGTTTACATTTGTCGCTGAGACTGTGAGAGTATGGCAGGGCAATCA-AGGGGGGGCATAGAGTTTGATCCCATTATTAATTGGGATGTAAATATGGATATTGTCCGCATGTAGCTATGTGCAATGGAATTTACAACATTTCTGTGACACTCTCATCGTTTCCTCTGGTTGGTTCAGTAAGTTTTCTGGATTTATGGTGAGCAGTGGGCTGATTTCCCGAAAATGTATTCACGAC-ATCCGGCGAATGCAAAGTTGAGGAATAAGTTCATTTTAAAAAAAA] [+] EMBL BI795327 [CGAAGACAACAGACAGCGACACAGAGGAGGAGGGATCGTCCCAGAACAAATATGGAGGAATTTCTCCAAAGAAACCTCTCATTAATAAGGACCATGAGCGTGCCTATTTCGATTCCCCGATTGGGCAC TTGGCAAG CAAGGCGCAAGCAACAG CACAAAAGGCACAA CCGAGCCCC TGAAACCC AAG TTGCAGCGC AC GGCATATCCCCAGC TTCCT CCACGAAGGCCTGCGTGCACG TCAGGCGCGACGGAATAGTG TGCTCCAATCTCAGCAGTCAGCACTACATGTTTACATTTGTCGCTGAGACTGTGAGAGTATGGCAGGGCAATCA AGGGGGGGCATAGAGTTTGATCCCATTATTAATTGGGATGTAAATATGGATATTGTCCGCATGTAGCTATGTGCAATGGAATTTACAACATTTCTGTGACACTCTCATCGTTTCCTCTGGTTGGTTCAGTAAGTTTTCTGGATTTATGGTGAGCAGTGGGCTGATTTCCCGAAAATGTATTCACGAC ATCCGGCGAATGCAAAGTTGAGGAATAAGTTCATTTTAAAAAAAA] [+] EMBL AU096810 [ TTGGCCACTTTGGCAAGCCAAGGCGCAAGCAACAGCCACAAAAGGCATAANCCGAGCCCCTTGAAACCCAAAGTTTGCAGCGCTACGGGCATATCCCCAGCTTTCCTCCCACGAAGGCCTGCGTGCACGTTCAGGCGCGACGGAATAGTGTTGCTCCAATCTCAGCAGTCAGCACTACATGTTTACATTTGTCGCTGAGACTGTGAGAGTATGGCAGGGCAATCACAGGGGGGGCATAGAGTTTGATCCAATTATTAATTGGGATGTAAATATGGATATTGTCAGCATGTAGCTATGTGCAATGGAATTTACAACATTTCTGTGACACTCTCATCGTTTCCTCTGGTTGGTTCAGTAAGTTTTCTGGATTTATGGTGAGCAGTGGGCTGAATTGCCGAAAATGTATTCACGACAATCCGGCGAATGCAAAGTTGAGGAATAAGTTCACTTTAA ] consensusID : consensus_15432#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 436 fasta sequence [TTTTTTGTCACAGAAATGTTGTAAATTCCATTGCACATAGCTACATGCTGACAATATCCATATTTACATCCCAATTAATAATTGGATCAAACTCTATGCCCCCCCTGTGATTGCCCTGCCATACTCTCACAGTCTCAGCGACCTACAGAAGTACAAAGAGTATCGGATCCAATGAGCAAGACTGCAAGAACAGTTCACATCACTTCTTGACTCAGTTCTTCAGAAATCAAACAACAAAATTACATTTCTACTCACAAATGTAAACATGTAGTGCTGACTGCTGAGATTGGAGCACACTATTCCGTCGCGCCTGACGTGCACGCAGGCCTTCGTGGAGGAAGCTGGGGATATGCCGTGCGCTGCAACTTGGGTTTCAGGGGCTCGGTTGTGCCTTTTGTGCTGTTGCTTGCGCCTTGCTTGCCAAGTGCCCAATCGG] [+] EMBL CF293060 [TTTTTTGTCACAGAAATGTTGTAAATTCCATTGCACATAGCTACATGCTGACAATATCCATATTTACATCCCAATTAATAATTGGATCAAACTCTATGCCCCCCCTGTGATTGCCCTGCCATACTCTCACAGTCTCAGCGACCTACAGAAGTACAAAGAGTATCGGATCCAATGAGCAAGACTGCAAGAACAGTTCACATCACTTCTTGACTCAGTTCTTCAGAAATCAAACAACAAAATTACATTTCTACTCACAAATGTAAACATGTAGTGCTGACTGCTGAGATTGGAGCACACTATTCCGTCGCGCCTGACGTGCACGCAGGCCTTCGTGGAGGAAGCTGGGGATATGCCGTGCGCTGCAACTTGGGTTTCAGGGGCTCGGTTGTGCCTTTTGTGCTGTTGCTTGCGCCTTGCTTGCCAAGTGCCCAATCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_15432#2 GATATCGCGTCCGTCTCTCCTCCTCTTTTCTGCCTGCGTCTCACCAACCTCCTCTCCTCT 60 consensus_15432#3 ------------------------------------------------------------ consensus_15432#1 -----------------------------------------TCCTTATTTTTTTGGCACA 19 consensus_15432#4 ------------------------------------------------TTTTTTGTCACA 12 consensus_15432#0 ------------------------------------------------------------ consensus_15432#2 CCTCTCCTCTCCTATATCTTGCTCGGTCGCGCGCGGTCGAGTGGTCGACGCAGATAAACA 120 consensus_15432#3 ------------------------------------------------------------ consensus_15432#1 GAAATGTTGTAAATTCCATTGCACCTAGCTACATGCTGACAATATCCATATTTACATCCC 79 consensus_15432#4 GAAATGTTGTAAATTCCATTGCACATAGCTACATGCTGACAATATCCATATTTACATCCC 72 consensus_15432#0 -----------------------------------------------------ATAAACA 7 consensus_15432#2 AAACACCGATCGAGTCTTCGAGCTCGTTCCCGTGAGTTCTTTTATTAGTTTGCTCCATCG 180 consensus_15432#3 ------------------------------------------------------------ consensus_15432#1 AATTAATAATTGGATCAAACTCTATGCCCCCCCT--TGATTGCCCTGCCATACTCTCACA 137 consensus_15432#4 AATTAATAATTGGATCAAACTCTATGCCCCCCCTG-TGATTGCCCTGCCATACTCTCACA 131 consensus_15432#0 AAACACCGATCGAGTCTTCGAGCTCGTTCCCGTGAGTTCTTTTATTAGTTTGCTCCATCG 67 consensus_15432#2 ATCCCCCTGCTCTCTTCCTCTGCTTCTGTTGTTAGGGTTCAGAGGACGAACAACGCCGGT 240 consensus_15432#3 ------------------------------------------------------------ consensus_15432#1 GTCTCAGCGAC------------------------------------------------- 148 consensus_15432#4 GTCTCAGCGACCTACAGAAGTACAAAGAGTATCGGATCCAATGAGCAAGACTGCAAGAAC 191 consensus_15432#0 ATCCCCCTGCTCTCTTCCTCTGCTTCTGTTGTTAGGGTTCAGAGGACGAACAACGCCGGT 127 consensus_15432#2 GGTTGG-ACTACTCTCGCGCTCGGGGAGATGGCAAGCTTCGGCGAAGACAACAGAGCAGC 299 consensus_15432#3 ------------------------------------------CGAAGACAACAGA-CAGC 17 consensus_15432#1 ------------------------------------------------------------ consensus_15432#4 AGTTCACATCACTTCTTGACTCAGTTCTTCAGAAATCAAACAACAAAATTACATTTCTAC 251 consensus_15432#0 GGTTGG-ACTACTCTCGCGCTCGGGGAGATGGCAAGCTTCGGCGAAGACAACAGAGCAGC 186 consensus_15432#2 GACACAGAGGGAGGAGGGATCGTCCCAGAACAAATATGGAGGAATTTCTCCAAA------ 353 consensus_15432#3 GACACAGAGG-AGGAGGGATCGTCCCAGAACAAATATGGAGGAATTTCTCCAAA------ 70 consensus_15432#1 ----AAATGTAAACATGTAGTGCTGACTGCTGAGATTGGAGCACACTATTCCGT------ 198 consensus_15432#4 TCACAAATGTAAACATGTAGTGCTGACTGCTGAGATTGGAGCACACTATTCCGT------ 305 consensus_15432#0 GACACAGAGGGAGGAGGTATGCATACTCATCTACTATTCATCTAATTCTCTGTGTTGTCT 246 * * * * * * * * * * * consensus_15432#2 -GAAACCTCTCATTAATAAGGACCATGAGCGTGCCTATTTCGATTCCGCCGATTG--GGC 410 consensus_15432#3 -GAAACCTCTCATTAATAAGGACCATGAGCGTGCCTATTTCGATTCC-CCGATTG--GGC 126 consensus_15432#1 -CGCGCCTGACGTGCACGCAGGCCTTCGTGGAGGAAGCTGGGGATATGCCGTGCGCTGCA 257 consensus_15432#4 -CGCGCCTGACGTGCACGCAGGCCTTCGTGGAGGAAGCTGGGGATATGCCGTGCGCTGCA 364 consensus_15432#0 CCGTGCCTCTCCTCGACTTT-ACCATGATCA-GCCTACCATGGCATGAACATTTC-TTGC 303 *** * * * ** * * * * consensus_15432#2 ACTTGGCAAGCAAGGCGCAAGCAACAGCA-CAAAAGGCACAACCGAGCCCCTGAAACCCA 469 consensus_15432#3 ACTTGGCAAGCAAGGCGCAAGCAACAGCA-CAAAAGGCACAACCGAGCCCCTGAAACCCA 185 consensus_15432#1 ACTTGGGTTTCAGGGGCTCGGTTGTGCCT-TTTGTGCTGTTGCTTGCGCCTTGCTTGCCA 316 consensus_15432#4 ACTTGGGTTTCAGGGGCTCGGTTGTGCCT-TTTGTGCTGTTGCTTGCGCCTTGCTTGCCA 423 consensus_15432#0 TTTCGGTTATCGCCAACGAACTGAAGTTTTCTTTCTTTTTTTTCTGTTTCATTTCCCTCT 363 * ** * * * * consensus_15432#2 AGTTGCAGCGCACGG-CATATCCCCAGCTTCCTCCACGAAGGCCTGCGT-GCACGTCAGG 527 consensus_15432#3 AGTTGCAGCGCACGG-CATATCCCCAGCTTCCTCCACGAAGGCCTGCGT-GCACGTCAGG 243 consensus_15432#1 AGTGCC--CAATCGG-CGGAATCGAAATAGGCACGCTCATGGTCCTTAT-TAATGAGAGG 372 consensus_15432#4 AGTGCC--CAATCGG--------------------------------------------- 436 consensus_15432#0 ATTTCTCGTATGCGAATATAGCTTTGGTGATCGAGAGGAGTATTTATATTATGCCTCTGG 423 * * ** consensus_15432#2 CGCGACGGAATAGTGTGCTCCAATCTCAGCAGTCAGCACTACATGTTTACATTTGTCGCT 587 consensus_15432#3 CGCGACGGAATAGTGTGCTCCAATCTCAGCAGTCAGCACTACATGTTTACATTTGTCGCT 303 consensus_15432#1 TTTCTTTGGAGAAATTCCTCCATATTTGTTCTGGGACGATCCCTGGAAACAATTCAGACT 432 consensus_15432#4 ------------------------------------------------------------ consensus_15432#0 TGAAGTGTTTCGCTAGACAAATGCATTTGTTAATGGCAGTAAATATTTCCGTTCATAACT 483 consensus_15432#2 G-AGAC---TGTGAGAGTATGGCAGGGCAATCACAGGGGGGGCATAGA-GT----TTGAT 638 consensus_15432#3 G-AGAC---TGTGAGAGTATGGCAGGGCAATCA-AGGGGGGGCATAGA-GT----TTGAT 353 consensus_15432#1 TCAGTT---TAGAAAAGCATAAATACAAAGGGACAGCAAAACTTCAGACAT----GCGTA 485 consensus_15432#4 ------------------------------------------------------------ consensus_15432#0 CTCAACCAATATTCAGGTGGGCATTAGCAATTAGAAAGAGTCTCTTAAAATGATCTCCGT 543 consensus_15432#2 CCAATTATTAA----TTGGGATGTAAATATGGATATT---GTCAGCATGTAGCTATGTGC 691 consensus_15432#3 CCCATTATTAA----TTGGGATGTAAATATGGATATT---GTCCGCATGTAGCTATGTGC 406 consensus_15432#1 AGCACTAAGCA----GTGGTATTCAGAATTTCAGATTTACACTTGTGCGGAACCACAGGC 541 consensus_15432#4 ------------------------------------------------------------ consensus_15432#0 TACATGGCCAAAACTCTAGCAACTTAGACCGAAGAATTTAGAGCACTTACAGTTATTAAT 603 consensus_15432#2 AATGGAATTTACAACATTTCTGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 751 consensus_15432#3 AATGGAATTTACAACATTTCTGTGACACTCTCATCGTTTCCTCTGGTTGGTTCAGTAAGT 466 consensus_15432#1 TAAATGGTTAGTTGAACATCACATCAACAACTTGCACTACATATGAATCATGGAGTAAAG 601 consensus_15432#4 ------------------------------------------------------------ consensus_15432#0 CAAAACGTTAACAAGAGTTTCTGAAATATATTACTCTTGTTTAGAGTTCAAATTTCTTTC 663 consensus_15432#2 AA---------------------------------------------------------- 753 consensus_15432#3 TTTCTGGATTTATGGTGAGCAGTGGGCTGATTTCCCGAAAATGTATTCACGACATCCGGC 526 consensus_15432#1 GTATCCCACTCCTGAACTCCAATGAGCAGTGTCTTAATTAGGTCACATGTTAGAAATATG 661 consensus_15432#4 ------------------------------------------------------------ consensus_15432#0 TCTCTTTATCTCTTTCGAAGTATACTATATAGTTCAAAATTTTCTTATCTGCCGCCACCG 723 consensus_15432#2 ------------------------------------------------------------ consensus_15432#3 GAATGCAAAGTTGAGGAATAAGTTCATTTTAAAAAAAA---------------------- 564 consensus_15432#1 CAACAGGCACAGCAGTTGACAGTGTTAGGAAAGGATCAAGCTGACCAACTTTTCCCCAAG 721 consensus_15432#4 ------------------------------------------------------------ consensus_15432#0 TTTCCCGGCGTTGATTTTGGGATGGAAACAACACCAAGTCACCGTGAACGTCACGTGGCA 783 consensus_15432#2 ------------------------------------------------------------ consensus_15432#3 ------------------------------------------------------------ consensus_15432#1 TTGTAGTGCTCAAGTATTTCCAGCCACACTGACCAATCAGGATGCATCCAGCCAACTAGT 781 consensus_15432#4 ------------------------------------------------------------ consensus_15432#0 TTTGAAAACTCAGGTCAGGGAAAGGAACCCAACAATACAATTATACCGACTTGGAAACCA 843 consensus_15432#2 ------------------------------------------------------------ consensus_15432#3 ------------------------------------------------------------ consensus_15432#1 GCTTCTGTTAT------------------------------------------------- 792 consensus_15432#4 ------------------------------------------------------------ consensus_15432#0 AATCAGAGGGAAGTAGAGGAGGCCAATTTGGTCTCGCCGTTTGTTGCTTTCATGAGAAAC 903 consensus_15432#2 ------------------------------------------------------------ consensus_15432#3 ------------------------------------------------------------ consensus_15432#1 ------------------------------------------------------------ consensus_15432#4 ------------------------------------------------------------ consensus_15432#0 AAGAACAGCCAAATTTTCAAAACGTGGGGGCTCCGTTCATCCAAGTAAAAAAAAAAATCA 963 consensus_15432#2 --- consensus_15432#3 --- consensus_15432#1 --- consensus_15432#4 --- consensus_15432#0 AAT 966 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||