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Oryza sativa
cluster # 15440 cluster # 15440       Sequences # 22       consensus # 6


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_15440#0 length = 542 sequences # 13  
consensus_15440#1 length = 472 sequences # 2  
consensus_15440#2 length = 443 sequences # 4  
consensus_15440#3 length = 346 sequences # 1  
consensus_15440#4 length = 277 sequences # 1  
consensus_15440#5 length = 263 sequences # 1  

consensusID : consensus_15440#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 13
consensus length = 542
fasta sequence
                              [TTTTTTTTTTTACCAAATACCAACCCTGGCAAGAGATAATTTCACACGCATAGAAAGCACTTCAGATAACAGTATTCTGGGTTTCTTACAATAGTCCTCTTTTTCAG-AACACAAA-TGCTCGATTCTGAC-AAAGTTTCCATCTACTACATGTTTA-TTAATTTTACATGATGACAACGGGCTGATAAATTATGAAATCTCAGGGGTAAGAGAGATGGAGGCGATCT-CCAT-CCTCATCT-TGATCATGTTCT-TGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCAGAGGCAGTCGAGGCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATGCATGCATAGAGGCAACCCTTCTCCTCAT-GGCGCCTCTGCACATGTTCATAGTA-GGACATGTCCTGTGCCATTGGAGCGTTATACATCTTGTCTCTCT-GCTTCTGATGAACAAGCACTCACCTCTCTAAAAAGGTTTCAGAGAAGAACACAACTATTCAAGGGCCAAGGGTTTTCTTCTCCTGTCCTCTCT]

[-] EMBL BI803917             [TTTTTTTTTTTACCAAATACCAACCCTGGCAAGAGATAATTTCACACGCATAGAAAGCACTTCAGATAACAGTATTCTGGGTTTCTTACAATAGTCCTCTTTTTCAG AACACAAAGTGCTCGATTCTGAC AAAGTTTCCATCTACTACATGTTTA TTAATTTTACATGATGACAACGGGCTGATAAATTATGAAATCTCAGGGGTAAGAGAGATGGAGGCGATCT CCAT CCTCATCTGTGATCATGTTCTGTGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCAGAGGCAGTCGAGGCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATGCATGCATAGAGGCAACCCTTCTCCTCAT GGGGCCTCTGGACATGTTCATAGTA GGACATTTCCTGTGCCATTGGAGCGTTATACATCTGGTCTCTCT GGTTCTG                                                                                      ]
[+] EMBL CF300597             [                                   ttttTTTCACACGCATAGAAAGCACTTCAGATAACAGTATTCTGGGTTTCTTACAATAGTCCTCTTTTTCAA AACACAAA TGCTCGATTCTGAC AAAGTTTCCATCTACTACATGTTTA TTAATTTTACATGATGACAACGGGCTGATAAATTATGAAATCTCAGGGGTAAAAAAGATGGAGGCGATCT CCAT CCTCATCT TGATCATGTTCT TGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCAGAGGCAGTCGAGGCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATGCATGCATAGAGGCAACCCTTCTCCTCAT GGCGCCTCTGCACATGTTCATAGTA GGACATGTCCTGTGCCATTGGAGCGTTATACATCTTGTCTCTCT GCTTCTGATGAACAAGCACTCACCTCTCTAAAAAGGTTTCAGAGAAGAACACAACTATTCAAGGGCCAAGGGTTTTCTTCTCCTGTCCTCTC ]
[-] EMBL AU064075             [                                              CGCATAGAAAGCACTTCAGATACCAGTATTCTGGGTTTCTTACAATAGTCCTCTTTTTCAG AACACAAA TGCTCGATTCTGAC AAAGTTTCCATCTACTACATGTTTA TTAATTTTACATGATGACAACGGGCTGATAAATTATGAAATCTCAGGGGTAAGAGAGATGGAGGCGATCT CCAT CCTCATCT TGATCATGTTCT TGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCAGAGGCAGTCGAGGCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATGCATGCATAGAGGCAACCCTTCTCCTCAT GGCGCCTCTGCACATGTTCATAGTA GGACATGTCCTGTGCCATTGGAGCGTTATACATCTTGTCTCTCT GCTTCTGATGAACAAGCACTCACCTCTCTAAAAAGGTTTCAGAGAAGAACACAACTATTCAAGGGC                           ]
[-] EMBL AU032487             [                                       tttttttttCATAGAAAGCACTTCAGATAACAGTATTCTGGGTTTCTTACAATAGTCCTCTTTTTCAG AACACAAA TGCTCGATTCTGAC AAAGTTTCCATCTACTACATGTTTA TTAATTTTACATGATGACAACGGGCTGATAAATTATGAAATCTCAGGGGTAAGAGAGATGGAGGCGATCT CCAT CCTCATCT TGATCATGTTCT TGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCAGAGGCAGTCGAGGCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATGCATGCATAGAGGCAACCCTTCTCCTCATGGGCGCCTCTGCACATGTTCATAGTAGGGACATGTCCTGTGCCATTGGAGCGTTATANATCTTGTCTCTCTGGCTTCTGATGAACAAGCANTCANCTCTCTAAAAAGGTTTCAGAGAAGAACACAACTATTCAAGGGgc                          ]
[-] EMBL AK121057             [                                                    GAAAGCACTTCAGATAACAGTATTCTGGGTTTCTTACAATAGTCCTCTTTTTCAG AACACAAA TGCTCGATTCTGAC AAAGTTTCCATCTACTACATGTTTA TTAATTTTACATGATGACAACGGGCTGATAAATTATGAAATCTCAGGGGTAAGAGAGATGGAGGCGATCT CCAT CCTCATCT TGATCATGTTCT TGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCAGAGGCAGTCGAGGCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATGCATGCATAGAGGCAACCCTTCTCCTCAT GGCGCCTCTGCACATATTCATAGTA GGACATGTCCTGTGCCATTGGAGCGTTATACATCTTGTCTCTCT GCTTCTGATGAACAAGCACTCACCTCTCTAAAAAGGTTTCAGAGAAGAACACAACTATTCAAGGGCCAA GGTTTTCTTCTCCTGTCCTCTCT]
[-] EMBL OSS12685A            [                                           tttttttttGAAAGCACTTCAGATAACAGTA TCNGGGNTTCTTANAATAGNCCNCTTTTTCAGAAACACAAA TGCTCGATTCTGACAAAAGTTTCCATCTACTACATGTTTA TTAATTTTACATGATGACAACGGGCTGATAAATTATGAAATCTCAGGGGTAAGAGAGATGGAGGCGATCT CCAT CCTCATCT TGATCATGTTCT TGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCAGAGGCAGTCGAGGCAGNACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATGCATGCATAGAGGCAACCCTTCTCCTCAT GGCGCCTCTGCACATGTTCATAGTA GGACATGTCCTGTGCCATTGGAGCGTTATACATCTTGTCTCTCT GCTTCTGATGAACAAGCACTCACCTCTCTAAAAAGGTTTCAGAGAAGAACACAACTATTCAAGGGCCAAGGtt                    ]
[-] EMBL AU069820             [                                                                                tTTCCTTAAAATAGGCCCCTTTTTCAG AACACAAA TGCNCGATTCTGAC AAAG TTCCATCTACTACATGGTTA TTAATTTTACATGATGACAACGGGCTGATAAATTATGAAATCTCAGGGGTAANAGAGATGGAGGCGATCT CCAT CCTCATCT TGATCATGTTCT TGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCAGAGGCAGTCGAGGCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGANGCATGCATAGAGGCAACCCTTCTCCTCAT GGCGCCTCTGCACATGTTCATAGTA GGACATGTCCTGTGCCATTGGAGCGTTATACATCTTGTCTCTCT GCTTCTGATGNACAAGCACTCACCTCTCTAAAAAGGTTTCAGAGAAGAANACAACTANTCAAGGGCCA                         ]
[-] EMBL CF299758             [                                                                                              tttttTTTTTCAG AACACAAA TGCTCGATTCTGAC AAAGTTTCCATCTACTACATGTTTA TTAATTTTACATGATGACAACGGGCTGATAAATTATGAAATCTCAGGGGTAAGAGAGATGGAGGCGATCT CCATCCCTCATCT TGATCATGTTCT TGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCAGAGGCAGTCGAGGCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATGCATGCATAGAGGCAACCCTTCTCCTCAT GGCGCCTCTGCACATGTTCATAGTA GGACATGTCCTGTGCCATTGGAGCGTTATACATCTTGTCTCTCT GCTTCTGATGAACAAGCACTCACCTCTCTAAAAAGGTTTCAGAGAAGAACACAACTATTCAAGGGCCAA GGTTTTCTTCTCC          ]
[-] EMBL OSR19521A            [                                                                                                                aAAA TGCTCGATTCTGAC AAAGTTTCCATCTACTNCATGTTTANTTAATTTTACATGATGACAACGGGCTGATAAATTATGAAATCTCAGGGGTAAGAGAGATGGAGGCGATCT CCAT CCTCATCN TGATCATGTTCT TGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCAGAGGCAGTCGAGGCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATGCATGCATAGAGGCAACCCTTCTCCTCAT GGCGCCTCTGCACATGTTCATAGTA GGACATGTCCTGTGCCATTGGAGCGTTATACATCTTGTCTCTCT GCTTCTGATGAACAAGCACTCACCTCTCTAAAAAGGTTTCAGAGAAGAACACAACTATTCAAGGGCCAAGGt                     ]
[-] EMBL OSS10627A            [                                                                                                                   A TGCTCGATTCTGAC AAAG TTCCATCTACTACATGTTTA TTAATTTTACATGATGACAACGGGCTGATAAATTATGAAATCTCAGGGGTAAGAGAGATGGAGGCGATCT CCAT CCTCATCT TGATCATGTTCT TGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCAGAGGCAGTCGAGGCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATGCATGCATAGAGGCAACCCTTCTCCTCAT GGCGCCTCTGCACATGTTCATAGTA GGACATGTCCTGTGCCATTGGAGCGTTATACATCTTGTCTCTCT GCTTCTGATGNACAAGCACTCACCTCTCTAAAAAGGTTTCAGAGAAGAACACAACTATTCAAGGGCC                          ]
[-] EMBL CF300598             [                                                                                                                                                 ACTACATGTTTA TTAATTTTACATGATGACAACGGGCTGATAAATTATGAAATCTCAGGGGTAAGAGAGATGGAGGCGATCTCCCAT CCTCATCT TGATCATGTTCT TGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCAGAGGCAGTCGAGGCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATGCATGCATAGAGGCAACCCTTCTCCTCAT GGCGCCTCTGCACATGTTCATAGTA GGACATGTCCTGTGCCATTGGAGCGTTATACATCTTGTCTCTCT GCTTCTGATGAACAAGCACTCACCTCTCTAAAAAGGTTTCAGAGAAGAACACAACTATTCAAGGGCCAA GGTTTTCTTCT            ]
[-] EMBL AU065987             [                                                                                                                                                                                                                            GGCGATCT CCAT CCTCATCT TGATCATGTTCT TGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCAGAGGCAGTCGAGGCAGNACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATGCATGCATAGAGGCAACCCTTCTCCTCAT GGCGCCTCTGCACATGTTCATAGTA GGACATGTCCTGTGCCATTGGAGCGTTATACATCTTGTCTCTCT GCTTCTGATGAACAAGNACTCACCTCTCTAAAAAGGTTTCAGAGAAGAACACAACTATTCAAGGGCCAAGGtt                    ]
[-] EMBL OS1321918            [                                                                                                                                                                                                                                                                                                       AGAGAAANTCGAGNCAGGACTCNCNGGTCTCGTAGCAGNAGAAGCAGCACAGTGCAGTGAAGATGCATGCATAGAGGCAACCCTTCTCCTCAT GGCGCCTCTGCACATGTTCATAGTA GGACATGTCCTGTGCCATTGGAGCGTTATACATCTTGTCTCTCT GCTTCTGATGGACAAGNACTCACCTCTCTAAAAAGGTTTCAGAGAAGNACACAACTATTCAAGGGCCAA GGTTTTC                ]


>consensus_15440#0 TTTTTTTTTTTACCAAATACCAACCCTGGCAAGAGATAATTTCACACGCATAGAAAGCAC TTCAGATAACAGTATTCTGGGTTTCTTACAATAGTCCTCTTTTTCAGAACACAAATGCTC GATTCTGACAAAGTTTCCATCTACTACATGTTTATTAATTTTACATGATGACAACGGGCT GATAAATTATGAAATCTCAGGGGTAAGAGAGATGGAGGCGATCTCCATCCTCATCTTGAT CATGTTCTTGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCAGAGGCAGTCGAG GCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATGCATGCATA GAGGCAACCCTTCTCCTCATGGCGCCTCTGCACATGTTCATAGTAGGACATGTCCTGTGC CATTGGAGCGTTATACATCTTGTCTCTCTGCTTCTGATGAACAAGCACTCACCTCTCTAA AAAGGTTTCAGAGAAGAACACAACTATTCAAGGGCCAAGGGTTTTCTTCTCCTGTCCTCT CT



consensusID : consensus_15440#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 472
fasta sequence
                              [GAAAGCACTTCAGATAACAGTATTCTGGGTTTCTTACAATAGTCCTCTTTTTCAGAACACAAATGCTCGATTCTGACAAAGTTTCCATCTACTACATGTTTATTAATTTTACATGATGACAACGGGCTGATAAATTATGAAATCTCAGGGGTAAGAGAGATGGAGGCGATCTCCATCCTCATCTTGATCATGTTCTTGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCAGAGGCAGTCGAGGCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATGCATGCGTAGAGGCAGCCCTTCTCCTCATGCCGCTTGGTGCAGTGATCGTAGTAGGACATGTCCTGCTGCGCCGGAGGGTTGTACATCTTGGCTAGCTTCTCCTCTTCGATCGATCAGGCCAACCAAGAATGATCTCTCTTTTGATACAAATCTAAGCTCACTTTTCTCTTCA]

[-] EMBL AK061597             [GAAAGCACTTCAGATAACAGTATTCTGGGTTTCTTACAATAGTCCTCTTTTTCAGAACACAAATGCTCGATTCTGACAAAGTTTCCATCTACTACATGTTTATTAATTTTACATGATGACAACGGGCTGATAAATTATGAAATCTCAGGGGTAAGAGAGATGGAGGCGATCTCCATCCTCATCTTGATCATGTTCTTGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCAGAGGCAGTCGAGGCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATGCATGCGTAGAGGCAGCCCTTCTCCTCATGCCGCTTGGTGCAGTGATCGTAGTAGGACATGTCCTGCTGCGCCGGAGGGTTGTACATCTTGGCTAGCTTCTCCTCTTCGATCGATCAGGCCAACCAAGAATGATCTCTCTTTTGATACAAATCTAAGCTCACTTTTCTCTTCA]
[-] EMBL BI811772             [                                                               tttttttTTCTGACAAAGTTTCCATCTACTACATGTTTATTAATTTTACATGATGACAACGGGCTGATAAATTATGAAATCTCAGGGGTAAGAGAGATGGAGGCGATCTCCATCCTCATCTTGATCATGTTCTTGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCAGAGGCAGTCGAGGCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATGCATGCGTAGAGGCAGCCCTTCTCCTCATGCCGCTTGGTGCAGTGATCGTAGTAGGACATGTCCTGCTGCGCCGGAGGGTTGTACATCTTGGCTAGCcgg                                                                         ]


>consensus_15440#1 GAAAGCACTTCAGATAACAGTATTCTGGGTTTCTTACAATAGTCCTCTTTTTCAGAACAC AAATGCTCGATTCTGACAAAGTTTCCATCTACTACATGTTTATTAATTTTACATGATGAC AACGGGCTGATAAATTATGAAATCTCAGGGGTAAGAGAGATGGAGGCGATCTCCATCCTC ATCTTGATCATGTTCTTGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCAGAGG CAGTCGAGGCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATG CATGCGTAGAGGCAGCCCTTCTCCTCATGCCGCTTGGTGCAGTGATCGTAGTAGGACATG TCCTGCTGCGCCGGAGGGTTGTACATCTTGGCTAGCTTCTCCTCTTCGATCGATCAGGCC AACCAAGAATGATCTCTCTTTTGATACAAATCTAAGCTCACTTTTCTCTTCA



consensusID : consensus_15440#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 443
fasta sequence
                              [TTTTTTTTTTTGAAAGCACTTCAGATAACAGTATTCTGGGTTTCTTACAATAGTCCTCTTTTTCAGAACACAAATGCTCGATTCTGACAAAGTTTCCATCTACTACATGTTTATTAATTTTACATGATGACAACGGGCTGATAAATTATGAAATCTCAGGGGTAAGAGAGATGGAGGCGATCTCCATCCTCATCTTGATCATGTTCTTGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCAGAGGCAGTCGAGGCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATGCATGCATAGAGGCAACCCTTCTCCTCATGGCGCCTCT-GCACATGTTCATAGTAGGACATGTCCT-GTGCCATTGGAGCGTTATACATCTTGTCTCTCTGCTTCTGATGAACAAGCACTCACCTCTCTAAAAAG]

[-] EMBL AU078060             [TTTTTTTTTTTGAAAGCACTTCAGATAACAGTATTCTGGGTTTCTTACAATAGTCCTCTTTTTCAGAACACAAATGCTCGATTCTGACAAAGTTTCCATCTACTACATGTTTATTAATTTTACATGATGACAACGGGCTGATAAATTATGAAATCTCAGGGGTAAGAGAGATGGAGGCGATCTCCATCCTCATCTTGATCATGTTCTTGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCAGAGGCAGTCGAGGCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATGCATGCATAGAGGCAACCCTTCTCCTCATGGCGCCTCT GCACATGTTCATAGTAGGACATGTCCT GTGCCATTGGAGCGTTATACATCTTGTCTCTCTGCTTCTGATGAACAAGCACTCACCTCTCTAAAAAG]
[-] EMBL AU070647             [               ttttTTTAGATAACAGTATTCTGGGTTTCTTACAATAGTCCTCTTTTTCAGAACACAAATGCTCGATTCTGACAAAGTTTCCATCTACTACATGTTTATTAATTTTACATGATGACAACGGGCTGATAAATTATGAAATCTCAGGGGTAAGAGAGATGGAGGCGATCTCCATCCTCATCTTGATCATGTTCTTGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCAGAGGCAGTCGAGGCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATGCATGCATAGAGGCAACCCTTCTCCTCATGGCGCCTCT GCACATGTTCATAGTAGGACATGTCCT GTGCCATTGGA                                                         ]
[-] EMBL BI806540             [                                    ttttTTTTTTACAATAGTCCTCTTTTTCAGAACACAAATGCTCGATTCTGACAAAGTTTCCATCTACTACATG TTATT ATTTTAC TGATGACCACGGGCTGATAAATTATGAAATCTCAGGGGTAAGAGAGATGGAGGCGATCTCCATCCTCATCTTGATCATGTTCTTGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCAGAGGCAGTCGAGGCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATGCATGCATAGAGGCAACCCTTCTCCTCATGGCGCCTCTGGCACATGTTCATAGTAGGACATGTCCTGGTGCCATTGGA                                                         ]
[-] EMBL AU031821             [                                      ttTTTCTTACAATAGTCCTCTTTTTCAGAACACAAATGCTCGATTCTGACAAAGTTTCCATCTACTACATGTTTATTAATTTTACATGATGACAACGGGCTGATAAATTATGAAATCTCAGGGGTAAGAGAGATGGAGGCGATCTCCATCCTCATCTTGATCATGTNCTTGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCAGAGGCAGTCGAGGCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATGNATGCATAGAGGCAACCCTTCNCCTCATGGCGCC                                                                                                    ]


>consensus_15440#2 TTTTTTTTTTTGAAAGCACTTCAGATAACAGTATTCTGGGTTTCTTACAATAGTCCTCTT TTTCAGAACACAAATGCTCGATTCTGACAAAGTTTCCATCTACTACATGTTTATTAATTT TACATGATGACAACGGGCTGATAAATTATGAAATCTCAGGGGTAAGAGAGATGGAGGCGA TCTCCATCCTCATCTTGATCATGTTCTTGCTATGGCTTGATATGGCAGCCTAGTTGCAGC AGCAGCAGAGGCAGTCGAGGCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTG CAGTGAAGATGCATGCATAGAGGCAACCCTTCTCCTCATGGCGCCTCTGCACATGTTCAT AGTAGGACATGTCCTGTGCCATTGGAGCGTTATACATCTTGTCTCTCTGCTTCTGATGAA CAAGCACTCACCTCTCTAAAAAG



consensusID : consensus_15440#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 346
fasta sequence
                              [TTAATTTACATNTNCAACGGCTGATAAATTATGAATCCAGGGTAAGAGAGATGAGCGATCCCACCTCACTTGATCATGTCTTGTATGCTTGATATGCACCTAGTTCAGCAGCAGCAGAGGCAGTCGAGGCAGCACTCGCAGGNTCGTAGCAGCAGAAGCAGCACAGTCAGTGAGATGCATGCATAGAGNAACCCTTCCNCCTATGGCGCCTCTGCACATGTTCATAGTAGGACATGTCCTGTGCCATTGGAGCGTTATACATCTTGTCTCTCTGCTTCTGATGAACAAGCACTCACCTCTCTAAAAAGGTTTCAGAGAAGAACACAACTATTCAAGGGCCAAGGTT]

[-] EMBL AU070474             [TTAATTTACATNTNCAACGGCTGATAAATTATGAATCCAGGGTAAGAGAGATGAGCGATCCCACCTCACTTGATCATGTCTTGTATGCTTGATATGCACCTAGTTCAGCAGCAGCAGAGGCAGTCGAGGCAGCACTCGCAGGNTCGTAGCAGCAGAAGCAGCACAGTCAGTGAGATGCATGCATAGAGNAACCCTTCCNCCTATGGCGCCTCTGCACATGTTCATAGTAGGACATGTCCTGTGCCATTGGAGCGTTATACATCTTGTCTCTCTGCTTCTGATGAACAAGCACTCACCTCTCTAAAAAGGTTTCAGAGAAGAACACAACTATTCAAGGGCCAAGGTT]


>consensus_15440#3 TTAATTTACATNTNCAACGGCTGATAAATTATGAATCCAGGGTAAGAGAGATGAGCGATC CCACCTCACTTGATCATGTCTTGTATGCTTGATATGCACCTAGTTCAGCAGCAGCAGAGG CAGTCGAGGCAGCACTCGCAGGNTCGTAGCAGCAGAAGCAGCACAGTCAGTGAGATGCAT GCATAGAGNAACCCTTCCNCCTATGGCGCCTCTGCACATGTTCATAGTAGGACATGTCCT GTGCCATTGGAGCGTTATACATCTTGTCTCTCTGCTTCTGATGAACAAGCACTCACCTCT CTAAAAAGGTTTCAGAGAAGAACACAACTATTCAAGGGCCAAGGTT



consensusID : consensus_15440#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 277
fasta sequence
                              [TTTTTCACACGCNTACNANGCCANTNCGGTANANCACCNTTGNGGGTTTNTTACAATAGNCCTNTTTTTCAAAACACAAATGCTCGATTCTGACAAAGTTTCCATCTACTACATGTTTATTAATTTTACATGATGACAACGGGCTGATAAATTATGAAATCTCAGGGGTAANANAGATGGAGGCGATCTCCATCCTCATCTTGATCATGTTCTTGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCANAGGCAGTCGAGGCANCACTCGCA]

[-] EMBL AU223276             [TTTTTCACACGCNTACNANGCCANTNCGGTANANCACCNTTGNGGGTTTNTTACAATAGNCCTNTTTTTCAAAACACAAATGCTCGATTCTGACAAAGTTTCCATCTACTACATGTTTATTAATTTTACATGATGACAACGGGCTGATAAATTATGAAATCTCAGGGGTAANANAGATGGAGGCGATCTCCATCCTCATCTTGATCATGTTCTTGCTATGGCTTGATATGGCAGCCTAGTTGCAGCAGCAGCANAGGCAGTCGAGGCANCACTCGCA]


>consensus_15440#4 TTTTTCACACGCNTACNANGCCANTNCGGTANANCACCNTTGNGGGTTTNTTACAATAGN CCTNTTTTTCAAAACACAAATGCTCGATTCTGACAAAGTTTCCATCTACTACATGTTTAT TAATTTTACATGATGACAACGGGCTGATAAATTATGAAATCTCAGGGGTAANANAGATGG AGGCGATCTCCATCCTCATCTTGATCATGTTCTTGCTATGGCTTGATATGGCAGCCTAGT TGCAGCAGCAGCANAGGCAGTCGAGGCANCACTCGCA



consensusID : consensus_15440#5
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 263
fasta sequence
                              [CCTCTTCTTGAATTGTGTCTCCAAAACAGGAGAACAAGAAGAACATCATAAGAAAAAAAAACAAATTGCTCTCACCATGCATAGAGGCAACCCTTCTCCTCATGGCGCCTCTGCACATGTTCATAGTAGGACATGTCCTGTGCCATTGGAGCGTTATACATCTTGTCTCTCTGCTTCTGATGAACAAGCACTCACCTCTCTAAAAAGGTTTCAGAGAAGAACACAACTATTCAAGGGCCAAGGTTTTCTCCTCGTGCCGATTC]

[-] EMBL CA999321             [CCTCTTCTTGAATTGTGTCTCCAAAACAGGAGAACAAGAAGAACATCATAAGAAAAAAAAACAAATTGCTCTCACCATGCATAGAGGCAACCCTTCTCCTCATGGCGCCTCTGCACATGTTCATAGTAGGACATGTCCTGTGCCATTGGAGCGTTATACATCTTGTCTCTCTGCTTCTGATGAACAAGCACTCACCTCTCTAAAAAGGTTTCAGAGAAGAACACAACTATTCAAGGGCCAAGGTTTTCTCCTCGTGCCGATTC]


>consensus_15440#5 CCTCTTCTTGAATTGTGTCTCCAAAACAGGAGAACAAGAAGAACATCATAAGAAAAAAAA ACAAATTGCTCTCACCATGCATAGAGGCAACCCTTCTCCTCATGGCGCCTCTGCACATGT TCATAGTAGGACATGTCCTGTGCCATTGGAGCGTTATACATCTTGTCTCTCTGCTTCTGA TGAACAAGCACTCACCTCTCTAAAAAGGTTTCAGAGAAGAACACAACTATTCAAGGGCCA AGGTTTTCTCCTCGTGCCGATTC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_15440#3      TTAATTTACATNTNCAACGGCTGATAAATTATGAATCCAGGGTAAGAGAGATGAGCGATC 60
consensus_15440#5      ------------------------------------------------------------
consensus_15440#1      ------------------------------------------------------------
consensus_15440#4      ------------------------------------------------------------
consensus_15440#2      ------------------------------------------------------------
consensus_15440#0      ---------------------------------------------------------TTT 3
                                                                                   

consensus_15440#3      CCACCTCACTTGATCATGTCTTGTATGCTTGATATGCACCTAGTTCAGCAGCAGCAGAGG 120
consensus_15440#5      ---------------------------------------CCTCTTCTTGAATTGTGTCTC 21
consensus_15440#1      --------------------------------------------------GAAAGCACTT 10
consensus_15440#4      ----------------------------------TTTTTCACACGCNTACNANGCCANTN 26
consensus_15440#2      ---------------------------------------TTTTTTTTTTTGAAAGCACTT 21
consensus_15440#0      TTTTTTTTACCAAATACCAACCCTGGCAAGAGATAATTTCACACGCATA-GAAAGCACTT 62
                                                                                   

consensus_15440#3      CAGTCGAGGCAGCACTCGCAGGNTCGTAGCAGCAGAA--------GCAGCACAGTCAGTG 172
consensus_15440#5      CAAAACAGG-AGAACAAGAAGAACATCATAAGAAAAA--------AAAACA-AATTGCTC 71
consensus_15440#1      CAG-ATAAC-AGTATTCTGGGTTTCTTACAATAGTCCTCTTTTTCAGAACACAAATGCTC 68
consensus_15440#4      CGGTANANC-ACCNTTGNGGGTTTNTTACAATAGNCCTNTTTTTCAAAACACAAATGCTC 85
consensus_15440#2      CAG-ATAAC-AGTATTCTGGGTTTCTTACAATAGTCCTCTTTTTCAGAACACAAATGCTC 79
consensus_15440#0      CAG-ATAAC-AGTATTCTGGGTTTCTTACAATAGTCCTCTTTTTCAGAACACAAATGCTC 120
                       *     *   *         *      *  *                * ** *     * 

consensus_15440#3      AGATGCATGCATAGAGN-AACCCTTCCNCCTATGGCGCCTCTGCACATGTTCATAGTAGG 231
consensus_15440#5      TCAC-CATGCATAGAGGCAACCCTTCTCCTCATGGCGCCTCTGCACATGTTCATAGTAGG 130
consensus_15440#1      G-ATTCTGACAAAGTTTCCATC-TACTACATGTTTATTAATTTTACATGATGACAACGGG 126
consensus_15440#4      G-ATTCTGACAAAGTTTCCATC-TACTACATGTTTATTAATTTTACATGATGACAACGGG 143
consensus_15440#2      G-ATTCTGACAAAGTTTCCATC-TACTACATGTTTATTAATTTTACATGATGACAACGGG 137
consensus_15440#0      G-ATTCTGACAAAGTTTCCATC-TACTACATGTTTATTAATTTTACATGATGACAACGGG 178
                         *  *   ** **     * * * *  *   *        *  ***** * * *   **

consensus_15440#3      AC-ATGTCCTGTGCCATT---GGAGCGTTATACATC----TTGTCTCTCTGCTTCTGATG 283
consensus_15440#5      AC-ATGTCCTGTGCCATT---GGAGCGTTATACATC----TTGTCTCTCTGCTTCTGATG 182
consensus_15440#1      CTGATAAATTATGAAATCTCAGGGGTAAGAGAGATGGAGGCGATCTCCATCCTCATCTTG 186
consensus_15440#4      CTGATAAATTATGAAATCTCAGGGGTAANANAGATGGAGGCGATCTCCATCCTCATCTTG 203
consensus_15440#2      CTGATAAATTATGAAATCTCAGGGGTAAGAGAGATGGAGGCGATCTCCATCCTCATCTTG 197
consensus_15440#0      CTGATAAATTATGAAATCTCAGGGGTAAGAGAGATGGAGGCGATCTCCATCCTCATCTTG 238
                          **    * **  **    ** *    * * **        ****  * **  *  **

consensus_15440#3      AACAAGCACTCACCTC--TCTAAAAAGGTTTCAGAGAAGAACACAACTATTCAAG-GGCC 340
consensus_15440#5      AACAAGCACTCACCTC--TCTAAAAAGGTTTCAGAGAAGAACACAACTATTCAAG-GGCC 239
consensus_15440#1      ATCATGTTCTTGCTATGGCTTGATATGGCAGCCTAGTTGCA-GCAGCAGCAGAGGCAGTC 245
consensus_15440#4      ATCATGTTCTTGCTATGGCTTGATATGGCAGCCTAGTTGCA-GCAGCAGCANAGGCAGTC 262
consensus_15440#2      ATCATGTTCTTGCTATGGCTTGATATGGCAGCCTAGTTGCA-GCAGCAGCAGAGGCAGTC 256
consensus_15440#0      ATCATGTTCTTGCTATGGCTTGATATGGCAGCCTAGTTGCA-GCAGCAGCAGAGGCAGTC 297
                       * ** *  **  *       * * * **   *  **  * *  ** *     * *  * *

consensus_15440#3      AAGGTT------------------------------------------------------ 346
consensus_15440#5      AAGGTTTTCTCCTCGTGCCGATTC------------------------------------ 263
consensus_15440#1      GAGGCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATGCATGC 305
consensus_15440#4      GAGGCANCACTCGCA--------------------------------------------- 277
consensus_15440#2      GAGGCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATGCATGC 316
consensus_15440#0      GAGGCAGCACTCGCAGGTCTCGTAGCAGCAGAAGCAGCACAGTGCAGTGAAGATGCATGC 357
                        ***                                                        

consensus_15440#3      ------------------------------------------------------------
consensus_15440#5      ------------------------------------------------------------
consensus_15440#1      GTAGAGGCAGCCCTTCTCCTCATGCCGCTTGGTGCAGTGATCGTAGTAGGACATGTCCTG 365
consensus_15440#4      ------------------------------------------------------------
consensus_15440#2      ATAGAGGCAACCCTTCTCCTCATGGCGCCTCTGCACATGTTCATAGTAGGACATGTCCTG 376
consensus_15440#0      ATAGAGGCAACCCTTCTCCTCATGGCGCCTCTGCACATGTTCATAGTAGGACATGTCCTG 417
                                                                                   

consensus_15440#3      ------------------------------------------------------------
consensus_15440#5      ------------------------------------------------------------
consensus_15440#1      CTGCGCCGGAGGGTTGTACATCTTGGCTAGCTTCTCCTCTTCGATCGATCAGGCCAACCA 425
consensus_15440#4      ------------------------------------------------------------
consensus_15440#2      TGCCATTGGAGCGTTATACATCTTGTCTCTCTGCTTCTGATGAACAAGCACTCACCTCTC 436
consensus_15440#0      TGCCATTGGAGCGTTATACATCTTGTCTCTCTGCTTCTGATGAACAAGCACTCACCTCTC 477
                                                                                   

consensus_15440#3      ------------------------------------------------------------
consensus_15440#5      ------------------------------------------------------------
consensus_15440#1      AGAATGATCTCTCTTTTGATACAAATCTAAGCTCACTTTTCTCTTCA------------- 472
consensus_15440#4      ------------------------------------------------------------
consensus_15440#2      TAAAAAG----------------------------------------------------- 443
consensus_15440#0      TAAAAAGGTTTCAGAGAAGAACACAACTATTCAAGGGCCAAGGGTTTTCTTCTCCTGTCC 537
                                                                                   

consensus_15440#3      -----
consensus_15440#5      -----
consensus_15440#1      -----
consensus_15440#4      -----
consensus_15440#2      -----
consensus_15440#0      TCTCT 542
                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)